snR69

../../_images/snr69_h99_igb.png

  • snR69_intronic-boxCDsnoRNA-95nt-in-CNC04930

  • Within intron of CNC04930 (CNAG_02880) for Ribosome-binding ATPase YchF/Obg-like ATPase

  • Predicted target in 25S rRNA: gagCtgggttta

  • Orthologue of yeast snR69

../../_images/snr69-aligned.png

>AE017343.1:c1489899-1489805 Cryptococcus neoformans var. neoformans JEC21 chromosome 3 sequence
TTGCGTGATGAAACAGAGCCTAAAGCTCTTTAAACCCAGCTCATCGATGAGGAGTAACGCCCAATAAACA
AATGAGAGAATATCTTTTCCTGACT







  • Image source:

# STOCKHOLM 1.0
#=GF RW van Nues, May 2023
#=GF https://coalispr.codeberg.page/paper
#=GS snR69-JEC21/1-95 DE RWvN_snR69-intronic-boxCDsnoRNA-95nt-in-CNC04930 ncrna 3:1489804:1489899:-1
snR69-JEC21/1-95           --TTGCGTGATGAAACAGAGCCTAAAGCTC------TTTAAACCCAGCTCATCGATGA-GGAGTAACGCCCAATAAACA--AATGAGAGAATATC---------TTTTCCTGACT---
#=GS H99/1-95 DE NPNB01000012.1:543771-543865 Cryptococcus neoformans var. grubii strain H99 Chr_3, whole genome shotgun sequence
H99/1-95                   --TTGCGTGATGAAACAGAGCCTAAAGCTC------TTTAAACCCAGCTCATCGATGA-GGAGTAACGCCCAATAAACA--AATGAGAGAATTTC---------TTTTCCTGACT---
#=GS KwoSha/1-98 DE NQVO01000013.1:344564-344661 Kwoniella shandongensis strain CBS 12478 scaffold00013, whole genome shotgun sequence
KwoSha/1-98                --TTGCGTGATGAAACAGAGCTTT--GCTC------TTTAAACCCAGCTCATCGATGT-GGAGTAACGCCCAATATACA--AATGAGAGAACTTGTTA----TTATTTTCTGATC---
#=GS TakKor/1-101 DE BCKT01000002.1:c1151215-1151115 Takashimella koratensis DNA, scaffold: scaffold_1, strain: JCM 12878, whole genome shotgun sequence
TakKor/1-101               TCCTATCGGACGAAAAAGAGCTCT--GCTC------TTTAAACCCAGCTCTTCGATGT-GGAGTAACGCCCAATAT-CA--AATGAGACAATAATATA----AACAAATCTGATCCC-
#=GS PapLau/1-96 DE JDSR01000305.1:c2752-2657 Papiliotrema laurentii RY1 contig_317, whole genome shotgun sequence
PapLau/1-96                -TTTATATGATGAAAAAGGGCTATACGCCC------GTTAAACCCAGCTCGTCGATGT-GGAGTAACGCCCAAAAT-CA--AATGAGAAGATGTC----------TTTTCTGACCCC-
#=GS KwoBes/1-96 DE ASCK01000010.1:268600-268695 Kwoniella bestiolae CBS 10118 cont1.10, whole genome shotgun sequence
KwoBes/1-96                --TTGCCTGATGAAACAGAGCTCT--GCTC------TTTAAACCCAGCTCATCGATGT-GGAGTAACGCCCAATTATCA--AATGAGAGAAACTTTA-------TTTTACTGATCT--
#=GS KwoMan/1-96 DE ASQE01000052.1:c476458-476363 Kwoniella mangroviensis CBS 8507 cont2.51, whole genome shotgun sequence
KwoMan/1-96                --TTGCCTGATGAAACAGAGCTCT--GCTC------TTTAAACCCAGCTCATCGATGT-GGAGTAACGCCCAATTATCA--AATGAGAGAAATTTTA-------TTTTACTGATCT--
#=GS KwoHev/1-95 DE ASQC01000193.1:c18087-17993 Kwoniella heveanensis CBS 569 cont2.193, whole genome shotgun sequence
KwoHev/1-95                ---TGTGTGATGAAACAGAGCCCAAAGCTC------TTTAAACCCAGCTCATCGA-GT-GGAGTAACGCCCAATAG-AC--AATGAGAGAAATTTTA-------TATATCTGACCC--
#=GS VanHum/1-99 DE QKWK01000006.1:1185598-1185696 Vanrija humicola strain CBS 4282 CBS4282_scaffold06, whole genome shotgun sequence
VanHum/1-99                ---TATCTGATGATAAAGAGCGAAACGCTC------TATAAACCCAGCTCTTCGAAGTCGGGGTCACGCCCGAACACACCTAATGAGACCTAAGAAC--------CTACCTGATTC--
#=GS CrySki/1-97 DE BCHT01000001.1:c2126714-2126618 Cryptococcus skinneri DNA, scaffold: scaffold_0, strain: JCM 9039, whole genome shotgun sequence
CrySki/1-97                ---TATCTGATGAGAAAGAGCACTATGCTCG-----ATTTAACCCAGCTCGTTGATGT-GGAGTAACGCCCAATA--ACA-AATGAGATTCATGTAC---------TCTCTGATTCGC
#=GS TriVee/1-98 DE BCKJ01000001.1:c322138-322041 Trichosporon veenhuisii DNA, scaffold: scaffold_0, strain: JCM 10691, whole genome shotgun sequence
TriVee/1-98                ---TATCGGATGAAAAGGGCCTATACGGCC------ATTAAACCCAGCTCGTCGATGTCGGGGTCACGCCCGAATAAACA-AATGAGAAGCTAGTAC--------TATTCTGAATC--
#=GS CutDer/1-98 DE JAMALL010000004.1:3369137-3369234 Cutaneotrichosporon dermatis strain M4303A ctg_4, whole genome shotgun sequence
CutDer/1-98                ---TACCGGATGAGAACGAGCGATATGCTC------TACAAACCCAGCTCGTCGATGTGGGAGTAACGCCCCGTTATACAC-ATGAGAATATACC---------TTTTACTGATTCC-
#=GS ApiAki/1-99 DE PQXP01000015.1:61794-61892 Apiotrichum akiyoshidainum strain HP2023 Contig23, whole genome shotgun sequence
ApiAki/1-99                --TTATCGGATGATAAAGGTCTATACGACC------GATAAACCCAGCTCGTCGATGTCGGGGTCACGCCCGAATAAACA-AATGAGAAGCTAG--------TTACTATCTGAATC--
#=GS CutOle/1-97 DE MATS01000054.1:375311-375407 Cutaneotrichosporon oleaginosum strain ATCC 20509 scaffold_2_c7, whole genome shotgun sequence
CutOle/1-97                ---TACCGGATGAGAACGAGCGATACGCTC------TACAAACCCAGCTCGTCGATGTGGGAGTAACGCCCCGTTATACAC-ATGAGAAATTTCC---------TTTTACTGATTC--
#=GS BulAlb/1-94 DE CAMYTR010000001.1:178932-179025 Bullera alba genome assembly, contig: jcf7180000012093, whole genome shotgun sequence
BulAlb/1-94                -----TCGGATGAAAAAGGCC-ATCGGCC-------TATAAACCCAGCTCTTCGA-GTAGGGGTCACGCCCATAAAACCA--ATGAGACCAAATAG------TTTATTTCTGACTC--
Annot/1-34                 ------RTGATGA-------------------------AUUUGGGUCGAG-CTGA---------------------------RTGATGA--------------------CTGA-----
SacCer-snR69/1-100         ---TTTATGATGAGACCACGTCCTTAGTGACAATGCTATAAACCCAGCTCTTCGATTCGTT-----TTT------AATGAAAGGGAGAAGA-TTTTTTTGTCAAACGCTCTGAGT---
//