coalispr.resources.share.clean_fasta¶

Script to minimize chromosome names in fasta files.

Functions¶

`clean_fasta`(infile, tag, outname)	Simplify chromosome naming to initial number/symbol
`main`()

coalispr.resources.share.clean_fasta.clean_fasta(infile, tag, outname)¶

Simplify chromosome naming to initial number/symbol

Parameters:

infile (str) – path to fasta file with redundant/long/confusing sequence titles.
tag (str) – Filename-addition (default: ‘_chr’) marking the output fasta file (when outname is not given).
outname – Name of resulting fasta file to save.

Return type:

Fasta file with <outname> or name of <infile> plus <_tag>.