coalispr.bedgraph_analyze.info_plots¶
Module to plot info on program parameters or mapped data.
Attributes¶
Functions¶
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For picking some good value, keeping enough but no too many. |
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Provide a quick impression of sequencing data. |
Module Contents¶
- coalispr.bedgraph_analyze.info_plots.logger¶
- coalispr.bedgraph_analyze.info_plots.show_regions_vs_settings(tag, notitles)¶
For picking some good value, keeping enough but no too many.
- Returns:
Plots showing effects of changing parameters on number of regions identified for 1. TAGUNCOLL and 2. TAGCOLL reads; can be saved as png or svg.
- Return type:
Two diagrams with seaborn plots
- coalispr.bedgraph_analyze.info_plots.show_mapped_vs_unmapped(tag, group, showdiscards, notitles, log2=False)¶
Provide a quick impression of sequencing data.
- Parameters:
tag (str) – Label marking type of reads analyzed: TAGCOLL or TAGUNCOLL.
group (str) – Name determining grouping of samples, either CATEGORY, METHOD or FRACTION.
log2 (bool) – Use log2 scale if True.
- Returns:
Plots showing total input numbers of mapped and unmapped (if available) reads; can be saved as png or svg.
- Return type:
Diagrams with seaborn barh plots for collapsed or uncollapsed data;