Tremellomycetes¶
Homologous RNA sequences were found by searching nucleotide databases by BLAST.
The following species were chosen in specific searches (say for retrieval of loci with complimentarity to the guide in snRcnag12093).
Name, database |
Taxid |
Species (NCBI name) |
|---|---|---|
nr/nt |
Nucleotide collection |
|
JEC21 |
214684 |
Cryptococcus neoformans var. neoformans JEC21 (taxid:214684) |
H99 |
235443 |
Cryptococcus neoformans var. grubii H99 (taxid:235443) |
R265 |
294750 |
Cryptococcus gattii VGII R265 (taxid:294750) |
WMA276 |
367775 |
Cryptococcus gattii WM276 (taxid:367775) |
CryAmy |
104669 |
Cryptococcus amylolentus (taxid:104669) |
CryWin |
5619 |
Cryptococcus wingfieldii (taxid:5619) |
WGS |
whole-genome shotgun contigs |
|
CryFlo |
2479495 |
Cryptococcus floricola strain DSM 27421 (taxid:2479495) |
CryWin |
1295528 |
Cryptococcus wingfieldii CBS 7118 (taxid:1295528) |
CryAmy |
1296118 |
Cryptococcus amylolentus CBS 6273 (taxid:1296118) |
BulAlb |
157611 |
Bullera alba (taxid:157611) |
CryFla |
1279117 |
Cryptococcus flavescens NRRL Y-50378 (taxid:1279117) |
PapLau, PapTer |
189450 |
Papiliotrema (taxid:189450) |
KocImp |
4999 |
Kockovaella imperatae (taxid:4999) |
CryFra, VanFra |
181175 |
Cryptococcus fragicola, Vanrija fragicola (taxid:181175) |
TreTag |
2778382 |
Tremellales sp. Tagirdzhanova-0007 (taxid:2778382) |
TreYok |
1758741 |
Tremella yokohamensis (taxid:1758741) |
TreFuc |
64657 |
Tremella fuciformis (taxid:64657) |
NaeEnc, NaeAur |
1910899 |
Naematelia (taxid:1910899) (71784, 371454) |
KwoSha, KwoBes, KwoHev, KwoMan, KwoDej |
490731 |
Kwoniella (taxid:490731) (1734106, 324769, 89924 463800, 324770) |
CrySki |
89928 |
Cryptococcus skinneri (taxid:89928) |
TreMes |
5217 |
Tremella mesenterica (taxid:5217) |
TriInk |
82517 |
Trichosporon inkin (taxid:82517) |
TriOvo |
82524 |
Trichosporon ovoides (taxid:82524) |
TriCor, HemCor |
82509 |
Hemispora coremiiformis (taxid:82509) |
TriAsa |
82508 |
Trichosporon asahii (taxid:82508) |
For more extensive comparisons, snoRNAs were found in the following species:
Name, (WGS database) |
Taxid |
Species (NCBI name) |
|---|---|---|
CryGC4 |
2937425 |
Cryptococcus sp. GC_Crypt_4 (taxid:2937425) |
VanHum |
5417 |
Vanrija humicola (taxid:5417) |
SaiPod |
1890244 |
Saitozyma (taxid:1890244), Saitozyma podzolica |
PasPl2 |
2939539 |
Pascua sp. PL2904B (taxid:2939539) |
CryGC7 |
2937422 |
Cryptococcus sp. GC_Crypt_7 (taxid:2937422) |
CryGC3 |
2937426 |
Cryptococcus sp. GC_Crypt_3 (taxid:2937426) [1] |
CryGC5 |
2937424 |
Cryptococcus sp. GC_Crypt_5 (taxid:2937424) |
CryGC2 |
2937427 |
Cryptococcus sp. GC_Crypt_2 (taxid:2937427) [2] |
CryVH5 |
2946653 |
Cryptococcus sp. VH57_BW (taxid:2946653) |
TriMon |
82521 |
Trichosporon montevideense (taxid:82521) [3] |
TriGue |
105714 |
Trichosporon guehoae (taxid:105714) |
CutDas |
181174 |
Cutaneotrichosporon daszewskae (taxid:181174) |
CutOle |
879819 |
Cutaneotrichosporon oleaginosus (taxid:879819) |
CutArb |
387937 |
Cutaneotrichosporon arboriformis (taxid:387937) |
ApiBra |
82513 |
Apiotrichum brassicae (taxid:82513) |