SNORD16

../../_images/snord16_h99_igb.png

  • SNORD16_intronic-boxCDsnoRNA-87nt-in-CNA02800

  • Within CNA02800 (CNAG_00292) for a Zinc finger protein

  • Predicted target in 18S rRNA: (aggc)gcgcAaattac, with possibly extended base-pairing via gcct.

  • Orthologue of human SNORD16

  • The C’ box cannot be easily determined.

../../_images/snord16.png

>AE017341.1:727149-727236 Cryptococcus neoformans var. neoformans JEC21 chromosome 1, complete sequence
CTTCCATGATGTTCAATGTAATTTGCGTTTGAGCCGTCTCCTCGAGAGACGTCTTTGAAACCAAAATTTT
GCCTATATGTCTGATACT







  • Image source:

# STOCKHOLM 1.0
#=GF RW van Nues, June 2023
#=GF https://coalispr.codeberg.page/paper
Annot/1-34                   ---------------RTGATGA------CATTAAACGCGCTGA-----------------------------RTGA-------------CGGA------------------CTGA-------------
#=GS SNORD16/8-95 DE intronic-boxCDsnoRNA-87nt-in-CNA02800 ncrna 1:727149:727236:1
SNORD16/8-95                 ----------CTTCCATGATGTTCAA-TGTAATTTGCGTTTGAGCCGTCTCCT-----CG--AGAGACGTCTTTGAAACCAAAAT-TTTGCCT-AT-ATGT----------CTGATACT---------
#=GS H99/8-93 DE CP003820.1:752884-752970 Cryptococcus neoformans var. grubii H99 chromosome 1, complete sequence
H99/8-93                     ----------CTTCAATGATGTTCAA-TGTAATTTGCGTTTGAGCCGTCTCCT-----CG--AGAGACGTTTTTGAAACCAAAAT-TTTGCCT-AT-ATGT----------CTGATA-----------
#=GS R265/1-103 DE CP025762.1:707333-707435 Cryptococcus gattii VGII R265 chromosome 4
R265/1-103                   ----TTTCATCTTCTATGATGTTCAA-TGTAATTTGCGTTTGAGCCGTCTCCT-----CG--AGAGACGTCTCTGAAACCAAAAT-TTTGCCT-AT-ATGT----------CTGATACTCTCATTTTT
#=GS WM276/1-103 DE CP000287.1:719051-719153 Cryptococcus gattii WM276 chromosome B, complete sequence
WM276/1-103                  ----TTTCATACTTCATGATGTTCAT-TGTAATTTGCGTTTGAGCCGTCTCCT-----CG--AGAGACGTTTCTGAAACCAAAAT-TTTGCCT-AT-ATGT----------CTGATACTCTCATTTTT
#=GS BulAlb/1-107 DE CAMYTR010000137.1:c389339-389233 Bullera alba genome assembly, contig: jcf7180000012238, whole genome shotgun sequence
BulAlb/1-107                 TTCTTGCCCGCTTCAATGATGATCGA--GTAATTTGCGTTTGAGTGGTGTCCTCTATACGTAGAGGACGGCCGAGAAACCAATATTTATGCCT-AA-AAGT----------CTGATCAAGC-------
#=GS CryFla/1-94 DE CAUG01000183.1:47077-47170 Cryptococcus flavescens NRRL Y-50378 WGS project CAUG00000000 data, contig NODE_254_length_65340_cov_46_178040, whole genome shotgun sequence
CryFla/1-94                  ----TCCCGACCTTTATGATGTCTA--TGTAATTTGCGTTTGACGGCCGTC-----CATTGA--GGCGGTCAAAGAAACCAAACC-TATGCCT-AATATGT----------CTGACCCA---------
#=GS DioHun/1-90 DE JAMRJJ010000003.1:241966-242055 Dioszegia hungarica strain Y1 Contig3, whole genome shotgun sequence
DioHun/1-90                  -------TGCTCTCAGTGATGATTATATGTAATTTGCGTTTGAACGGTCTC------TCA-----GAGAACCTTGAAACCAACCA-TATGCCT-AA-ATGT----------CTGATCCCTA-------
#=GS KwoBes/1-102 DE ASCK01000017.1:456733-456834 Kwoniella bestiolae CBS 10118 cont1.16, whole genome shotgun sequence
KwoBes/1-102                 --CCCAACCCATTTTATGATGTTCA--TGTAATTTGCGTTTGAGCCTTTCACTACTCATT-AGAAAGTAGCTTTGAAACCAATAT-TA-GCCT-AATATGT----------CTGATCTAT--------
#=GS CutCut/1-97 DE LTAL01000756.1:32506-32602 Cutaneotrichosporon cutaneum strain ACCC 20271 contig756, whole genome shotgun sequence
CutCut/1-97                  ----CCGCTCTCATCATGATGGTCA--TGTAATTTGCGTTTGACGGTCCATTTACTC---GATGCGACCTCTATGAAACCAAAA--CCTGCCT-AT-ACGT----------CTGAATCCC--------
#=GS CryWin/1-101 DE AWGH01000015.1:c252279-252179 Cryptococcus wingfieldii CBS 7118 supercont1.15, whole genome shotgun sequence
CryWin/1-101                 -CCCCCTCCTTTTCTATGATGTTCAAATGTAATTTGCGTTTGAGAACCCTCTTT---------GGAGGGGCTTTGAAACCAAACT-TATGCCA-AA-ATGT----------CTGATCCCATTAC----
#=GS TriFae/1-97 DE JXYK01000002.1:c794994-794898 Trichosporon faecale strain JCM 2941 scaffold_0002, whole genome shotgun sequence
TriFae/1-97                  ---TGCGCTGCTGAGAAGATGTTCAA-TGTAATTTGCGTTTGAAAGGTCGCTCCTC------GAGGGAGGCCGTGAAACCAAACC-TATGCCT-AA-ACGA----------CTGATCACA--------
#=GS PapLau/1-103 DE JDSR01000184.1:11477-11579 Papiliotrema laurentii RY1 contig_192, whole genome shotgun sequence
PapLau/1-103                 -CCCCTCCACCTTCAATGATGTTCAA-TGTAATTTGCGTTTGACCGTTCTCCCAC---AAGATGGGAGCGCAAAGAAACCAAACC-TATGCCT-AATATGT----------CTGATCCAT--------
#=GS GasAcu-SNORD16/1-100 DE Gasterosteus_aculeatus SNORD16;  http://snoopy.med.miyazaki-u.ac.jp/snorna_db.cgi?mode=sno_info&id=Gasterosteus_aculeatus300109
GasAcu-SNORD16/1-100         -----------TGCCATGATGG-----TGTAATTTGCGTCTGAGTCGGTGATCAGTGACAGTGGCCTGCTGTCTTAAAGCTGTCACATGGTATTGA--TGTGTCTTCGAGTCTGAGCA----------
#=GS HomSap-SNORD16/1-101 DE http://snoopy.med.miyazaki-u.ac.jp/snorna_db.cgi?mode=sno_info&id=Homo_sapiens300523
HomSap-SNORD16/1-101         ----------TTGCAATGATGT-----CGTAATTTGCGTCTTACTCTGTTCTCAGCGACAGTTGCCTGCTGTCAGTAAGCTGGTACAGAAGGTTGA--CGAAAATTCTTA-CTGAGCAA---------
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