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coalispr documentation
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Contents:

  • Overview
  • How-to guides
  • Tutorials
    • Mouse miRNAs
      • Mouse-shared
      • Commonly unmapped
    • Yeast RBPs
      • Yeast-shared
    • Cryptococcus siRNAs
      • H99-shared
      • Intron-skipping siRNAs
      • Multimapping 21-mers in rde1Δ
    • Oligonucleotides
  • Bio‑informatics: Integrate negative controls to get the good data
    • SRP RNA
    • U1 snRNA
    • Nuclear RNase P
    • Box C/D snoRNAs
    • U14 & snR190
    • Targets for snoRNAs
      • SCARNA6
      • SnoR30
      • SNORD16
      • SNORD49
      • SNORD79
      • snR40_snR56
      • SNORD96
      • SnoR29
      • snoZ107-SnoR29b
      • SNORD110
      • snR13
      • snR45-U13_U3a
      • snR38
      • snR39b
      • snR45-II
      • snR40-like
      • snoU2-30
      • snR41
      • snR70
      • snR41-SNORD7
      • snR47-SNORD36C
      • snR48-SNORD60
      • snR51s-SNORD57
      • snR51_snR79
      • snR52-SNORD83
      • snR67-snoU31b
      • snR53
      • snR55
      • snR78
      • snR77
      • snR73-snoZ3
      • snR73b
      • snR58
      • snR60-Z15
      • snR61-SNORD38
      • SNORD17
        • Loci with complementarity to SNORD17
        • Tremellomycetes
      • snR62-SNORD34
      • snR63-SNORD46
      • snR64-SNORD74
      • snR66
      • snR67d
      • snR69
      • snR71-SNORD29
      • snR71b
      • snR72
      • snR75-SNORD15
      • snR76-SNORD88
      • snR50_snR40l
      • snR74
      • snR88
      • snRcnh01600
      • snRcnag12093
        • Loci with complementarity to snRcnag12093
        • Tremellomycetes
      • snRcnag12441
      • snRcne03050-SNORD30
        • Loci with complementarity to snRcne03050 D-guide
        • Tremellomycetes
      • snRcnf04440
        • Loci with complementarity to snRcnf04440
        • Tremellomycetes
      • snRcng00300
        • Loci with complementarity to snRcng00300
      • snRcnk02420-1
      • snRcnk02420-2
        • Loci with complementarity to snRcnk02420-1_-2
        • Tremellomycetes
      • U3b
      • U14 & snR190
      • U18-SNORD18
      • U24-SNORD24
    • H/ACA snoRNAs
  • About
  • References
  • Glossary
  • Common errors
  • coalispr.api
    • coalispr.bedgraph_analyze
      • coalispr.bedgraph_analyze.bam_counters
      • coalispr.bedgraph_analyze.bedgraph_plots
      • coalispr.bedgraph_analyze.collect_bedgraphs
      • coalispr.bedgraph_analyze.compare
      • coalispr.bedgraph_analyze.experiment
      • coalispr.bedgraph_analyze.genom
      • coalispr.bedgraph_analyze.info_plots
      • coalispr.bedgraph_analyze.process_bamdata
      • coalispr.bedgraph_analyze.process_bedgraphs
      • coalispr.bedgraph_analyze.references
      • coalispr.bedgraph_analyze.store
      • coalispr.bedgraph_analyze.unselected
    • coalispr.coalispr
    • coalispr.count_analyze
      • coalispr.count_analyze.annot
      • coalispr.count_analyze.countfile_plots
      • coalispr.count_analyze.filter_data
      • coalispr.count_analyze.groupcompare_plots
      • coalispr.count_analyze.load_countfile
      • coalispr.count_analyze.panel_plotters
      • coalispr.count_analyze.regioncount_plots
    • coalispr.resources
      • coalispr.resources.cmd_parser
      • coalispr.resources.constant
      • coalispr.resources.constant_in
        • coalispr.resources.constant_in.make_constant
      • coalispr.resources.dialog
      • coalispr.resources.numeric
      • coalispr.resources.plot_utilities
      • coalispr.resources.share
        • coalispr.resources.share.clean_fasta
        • coalispr.resources.share.cols_from_csv_to_tab
        • coalispr.resources.share.convert_gff3
        • coalispr.resources.share.convert_plusmin_bedgraph_to_plusplus
        • coalispr.resources.share.genbank2gtf
        • coalispr.resources.share.get_smallRNAs_and_targets
        • coalispr.resources.share.gtf_frm_tsv
        • coalispr.resources.share.ncfasta2gtf
        • coalispr.resources.share.no_empty_fa
        • coalispr.resources.share.reduce_gtf
        • coalispr.resources.share.revseq
        • coalispr.resources.share.sub_gtf
      • coalispr.resources.utilities
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coalispr.count_analyze¶

Submodules¶

  • coalispr.count_analyze.annot
  • coalispr.count_analyze.countfile_plots
  • coalispr.count_analyze.filter_data
  • coalispr.count_analyze.groupcompare_plots
  • coalispr.count_analyze.load_countfile
  • coalispr.count_analyze.panel_plotters
  • coalispr.count_analyze.regioncount_plots

Attributes¶

name

Package Contents¶

coalispr.count_analyze.name = 'count_analyze'¶
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  • coalispr.count_analyze
    • Submodules
    • Attributes
    • Package Contents
      • name