snR67d

../../_images/snR67d_h99_igb.png

  • snR67d_intronic-boxCDsnoRNA-92nt-as-CNAG_12831

  • Within intron of non-coding transcript, as CNAG_12831

  • Predicted target in 25S rRNA: attTtcagtgt

  • Orthologue of yeast snR67 (D guide)

../../_images/snR67d-align.png

>AE017349.1:960595-960686 Cryptococcus neoformans var. neoformans JEC21 chromosome 9 sequence
AGTCAAGATGAACACACAAAACCCTGTTGAGCAACAACGATATCGAAGTTGCTGGGAGGCTTGTATTCAA
ACACTGAAAATTCTGAACTGTT







  • Image source snR67d:

# STOCKHOLM 1.0
#=GF RW van Nues, July 2023
Annot/1-33                ----RTGATGA------------------CTGA------------------------RTGA-TGA-----------------UGUGACUUUUA-CTGA--------
#=GS snR67d/1-92 DE intronic-boxCDsnoRNA-92nt ncrna 9:960594:960686:1
snR67d/1-92               AGTCAAGATGAA---CACACAAAACCCTGTTGAGCAACAACG-ATATCGAAGTTGCTGGGA-GGCTTGTATT------CAA-ACACTGAAAATTCTGAACTGTT--
#=GS R265/1-94 DE CP025766.1:295876-295974 Cryptococcus gattii VGII R265 chromosome 8, complete sequence
R265/1-94                 GGTCAAGATGAA---CACACAAAACCCTGTTGAGCAACAACG-ATATCGAAGTTGCTGGGA-GGCTTGTATT------CAA-ACACTGAAAATTCTGAACTGCTCT
#=GS WM276/1-94 DE CP000293.1:c964454-964361 Cryptococcus gattii WM276 chromosome H, complete sequence
WM276/1-94                GGTCAAGATGAA---CACACAAAACCCTGTTGAGCAACAACG-ATATCGAAGTTGCTGGGA-GGCTTGTATT------CAA-ACACTGAAAATTCTGAACTGCTCT
#=GS CNAG_12831/1-92 DE CP003828.1:313713-313804 Cryptococcus neoformans var. grubii H99 chromosome 9, complete sequence
CNAG_12831/1-92           AGTTAAGATGAA---CACACAAAACCCTGTTGAGCAACGACG-ATATCGAAGTTGCTGGGA-GGCTTGTATT------CAA-ACACTGAAAATTCTGAACTGTT--
#=GS CryWin/1-95 DE AWGH01000013.1:11963-12057 Cryptococcus wingfieldii CBS 7118 supercont1.13, whole genome shotgun sequence
CryWin/1-95               CGTCACGATGAT---CACCTATAACCCTGTCGAGCCCATCTGAAATATGGTCGAGCTAAGA-GGCTTATT------CACAATACACTGAAAATTCTGAACGATCA-
#=GS CryFlo/1-93 DE RRZH01000007.1:c639012-638920 Cryptococcus floricola strain DSM 27421 chromosome 7 DSM27421_contig_07, whole genome shotgun sequence
CryFlo/1-93               CGTCACGATGAT---CAACTATAACCCTGTCGAGCCCATCTGAAATATGGTCGAGCTAAGA-GGCTTATT------CACAATACACTGAAAATTCTGAACGAT---
#=GS KwoSha/3-97 DE NQVO01000018.1:241530-241626 Kwoniella shandongensis strain CBS 12478 scaffold00018, whole genome shotgun sequence
KwoSha/3-97               ATCGACGATGAA---CATACAAAACCCTGCTGAGCGATCTG-AAATA-CGG--TGCGACGA-GGCATTTATATAATCATAACACACTGAAAATTCTGAGATCT---
#=GS SacCer-snR67/1-82 DE 25S:G2619,25S:U2724 Saccharomyces_cerevisiae snR67 http://snoopy.med.miyazaki-u.ac.jp/snorna_db.cgi?mode=sno_info&id=Saccharomyces_cerevisiae300033
SacCer-snR67/1-82         TAACATGATGACTAAGTTGTCGCCCCAAGCGGAT--------CTTTGAA--------ATGACTGATTTT--ACAAACAACAAACACTGAAAATTCTGAAA------
#=GC SS_cons              ---------------------------------(((((((((-----)))))))))--------------------------------------------------
//