Mouse-shared

/coalispr/docs/_source/tutorials/Mouse/shared/
├── Rn45s.gtf
├── 0_0-SRAaccess.sh
├── 0_1-SRAaccess.sh
├── 0_2-gzip-fastq.sh
├── 1_1-star-indices.sh
├── 2_1-collapse-pre-trimmed-seqs.sh
├── 2_2-clean-uncollapsed-pre-trimmed-seqs.sh
├── 3_1-run-star-collapsed-14mer.sh
├── 3_2-run-make-bedgraphs.sh
├── 3_2_0-run-sortBAM-star-Bedgraph.sh
├── 4_1-run-star-uncollapsed-14mer.sh
├── 4_1_2-remove-genome-from-shared-memory.sh
├── 4_2-run-make-bedgraphs-uncollapsed.sh
├── 5_1-QC_reports.sh
├── 5_1_0-run-RSeQC-bam_stat-FASTQC.sh
├── 6_0-genomelenght.sh
├── 6_1-common-ncRNAs.sh
├── 6_2-collect-miRNAs-and-targets.sh
├── GSE108799_ExpTable.tab
├── SRR_Acc_List.txt
├── SraRunTable.txt
├── XtraColumns.txt
├── check-3_mouse.txt
├── check-3_mouse45s.txt
├── fastqc_settings
│   ├── fastqc_adapters.txt
│   ├── fastqc_contaminants.txt
│   ├── fastqc_limits.txt
│   └── fastqc_limits_collapsed.txt
├── mmu-45S_ENA-X82564.fa
├── mmu-45S-NR_046233.gb
└── source-references.txt