SNORD110¶
SNORD110_intronic-boxCDsnoRNA-109nt-in-CNB02280 ncrna 2:661388:661496:-1
Within 1st intron of CNB02280 (CNAG_03730) mRNA for DNA-directed-RNA-polymerase-II-subunit RPB11
Predicted target in 18S rRNA: ggatTgacagat
Orthologue of human SNORD110
>AE017342.1:c661496-661388 Cryptococcus neoformans var. neoformans JEC21 chromosome 2 sequence TCGCATGATTATTCAACAAACTATAATAATCTGTCAATCCACGGAATAGACGCTTCTCTCATTGAGAGTCGACAGCCTC AGCCGAAAACGTTTGACCACTAATGACTCT
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# STOCKHOLM 1.0
#=GF RW van Nues, May 2023
#=GF https://coalispr.codeberg.page/paper
Annot/1-35 --------------RTGATGA-------------------uUAGACAGUUAGG-CTGA--------------------------------------------------------------RTGATGA----------------------CTGA---------------------------------------------------
#=GS SNORD110_intronic-boxCDsnoRNA-109nt-in-CNB02280/2-110 DE AE017342.1:c661496-661388 Cryptococcus neoformans var. neoformans JEC21 chromosome 2 sequence
SNORD110_intronic-boxCDsnoRNA-109nt-in-CNB02280/2-110 ----------TCGCATGATTATTCAA-CAAAC--TATAATAATCTGTCAATCCACGGAATAGACGCTTCTCTC-------------ATT-------------GAGAGTCGACAGCCTCAGCCGAAAA----CGTTTGACCACT-----AATGACTCT----------------------------------------------
#=GS H99/1-119 DE intron-CNAG_03730 CP003821.1:c647328-647210 Cryptococcus neoformans var. grubii H99 chromosome 2, complete sequence
H99/1-119 ---------TTCGCATGATTATTCAA-CAAAC--TATAATAATCTGTCAATCCACGGAATAGACGCTTCTCTC-------------TTT-------------GAGAGTCGACAGCCTCAGCCGAAAA----CGTTTGACCATT-----AATGACTCTTCTTATGAT--------------------------------------
#=GS WM276/1-108 DE CP000287.1:1146398-1146505 Cryptococcus gattii WM276 chromosome B, complete sequence
WM276/1-108 ----------TCGCATGATTATTCAA-CAAAC-----AATAATCTGTCAATCCACGGAATAGACGCTTCTCTC-------------TTAT------------GAGAGTCGACAGCCTCAGCCGAAAA----CGTTTGACCATT-----AATGACTCTT----------------------------------------------
#=GS CryWin/1-112 DE CP034262.1:c1603039-1602928 Cryptococcus wingfieldii strain CBS7118 chromosome 2, complete sequence
CryWin/1-112 -----------GAAATGATTAATATC-CAAAC-AAATAATAATCTGTCAATCCACGGAAAAGACGCTTCCCTCC-------------TC------------GGAGGGTCGACAGCCTCTGCCGACAA----CGTTTGACCTTC-----TATGATCTTCT---------------------------------------------
#=GS VanPse/1-111 DE CP086720.1:c400345-400235 Vanrija pseudolonga isolate DUCC4014 chromosome 7
VanPse/1-111 ------CCGCACGCATGATTATACTC-CAATA----TCTATATCTGTCAATCCACGTAAAAGACGCTTCCT----------------GC---------------GGGTCGACAGCCTCTGCCGAGAA----CGATTGTTTAAC-----AATGATACCGCGCC------------------------------------------
#=GS R265/1-111 DE CP025762.1:1113188-1113298 Cryptococcus gattii VGII R265 chromosome 4
R265/1-111 ----------TCGCATGATTATTCAA-CAAAC--AATAATAATCTGTCAATCCACGGAATAGACGCTTCTC--------------CCTTTTGA-----------GAGTCGACAGCCTCAGCCGAAAA----CGTTTGACCACT-----AATGACTCTT----------------------------------------------
#=GS TriMon/1-117 DE BCFV01000001.1:c3359416-3359300 Trichosporon montevideense DNA, scaffold: scaffold_0, strain: JCM 9937, whole genome shotgun sequence
TriMon/1-117 ------GCGCACGCATGATTACA----CAACC---TCAATCATCTGTCAATCCACGTAAAAGACGCTTCCT----------------GC---------------GGGTCGACAGCCTCTGCCGAGAAA--ACGAAACTATCAC-----AATGATACCCTTCCCAGATT------------------------------------
#=GS CutCut/1-148 DE JAMALK010000003.1:631170-631317 Cutaneotrichosporon cutaneum strain P1411 ctg_3, whole genome shotgun sequence
CutCut/1-148 ---------CGCACATGATTAGACA--CA-AC--TACTATAATCTGTCAATCCACGGAAAAGACG-TTCGC---------------TCT---------------GCGTT--CAGCCTCTGCCGAGAAA--CCGT-TGACCAC------AATGACACCTTCCTTCGCTCTTCATGTGAAGACAGGCTGACGATAGATGTCGGGGC
#=GS VanFra/1-134 DE BEDY01000006.1:1180282-1180415 Vanrija fragicola DNA, scaffold: scaffold_6, strain: JCM 1530, whole genome shotgun sequence
VanFra/1-134 ---------GTTACATGATTATA---ACA-ACAATATAATAATCTGTCAATCCACGTAAAAGACGCTTCCT----------------TC---------------GGGTCGACAGCCTCTGCCGAGAA---CTGT-TGTAACATTC---AATGATACATCGTCTCCATCCACCACTTTCGCCTTGT-------------------
#=GS TakKor/1-147 DE BCKT01000004.1:869552-869698 Takashimella koratensis DNA, scaffold: scaffold_3, strain: JCM 12878, whole genome shotgun sequence
TakKor/1-147 ----------TCATATGATTATCCAATCCA-TATATATATAATCTGTCAATCCACGGAAAAGACGCTTCAGTTCCTT----------TC---------GGGGAACAGTCGACAGCCTCTGCCGAGAAA--CCG---GAAACAACA---AATGATACCAACTCCTATACTCCCACCTCATTCCATC-------------------
#=GS VanHum/1-110 DE BFAH01000024.1:1132602-1132711 Vanrija humicola UJ1 DNA, scaffold25, whole genome shotgun sequence
VanHum/1-110 --------CCACGCATGATTATACTC-CAAT----ATCTATATCTGTCAATCCACGTAAAAGACGCTTCCT----------------GC---------------GGGTCGACAGCCTCTGCCGAGAA----CGATTGTCCAAC-----AATGATACTTCCTTC-----------------------------------------
#=GS KwoShan/1-137 DE NQVO01000006.1:558760-558896 Kwoniella shandongensis strain CBS 12478 scaffold00006, whole genome shotgun sequence
KwoShan/1-137 ---------ACGAGACGATTAACTCTACAAAC---AATAAAATCTGTCAATCCACGGAATAGACGCTTCTCCCTTCCTTTCATCT--TC--GGGTGGAAGAAGGGAGTCGACAGCCTCTGCCGATAA----CGTTTGACCAT------AATGATCGTTGTTCT-----------------------------------------
#=GS KwoHev/1-151 DE ASQB01000015.1:135608-135758 Kwoniella heveanensis BCC8398 cont1.15, whole genome shotgun sequence
KwoHev/1-151 TAAATATCGACGAAAGGATTAATTTTACAAAC-TATATATAATCTGTCAATCCACGGAATAGACGCTTCTCAGCCCTCT----TTCAACAGTT----AGAGGGCGAGTCGACAGCCTCTGCCGATAA----CGTTTGACCAT------TATGATCGTCTAATATATTCTA----------------------------------
#=GS KwoBes/1-118 DE ASCK01000039.1:c36057-35940 Kwoniella bestiolae CBS 10118 cont1.38, whole genome shotgun sequence
KwoBes/1-118 ----------CGAAATGATTATCCCAATCAAACTATATATAATCTGTCAATCCACGGAATAGACGCTTCTCTTTCT---------ATAAC---------AGAAACAGTCGACAGCCTCTGCCGATAA----CGTTTGACCCT------TATGATCG------------------------------------------------
#=GS KwoDej/1-123 DE ASCJ01000025.1:c843214-843092 Kwoniella dejecticola CBS 10117 cont1.25, whole genome shotgun sequence
KwoDej/1-123 ---------ACGAAATGATTATCCAAACAAAC-TATATATAATCTGTCAATCCACGGAATAGACGCTTCTTCCTCG---------TATCT-----CGATACGGGAAGTCGACAGCCTCAGCCGATAA----CGTTTGACCAT------AATGATCGT-----------------------------------------------
#=GS KwoMan/1-116 DE ASQF01000040.1:c113887-113772 Kwoniella mangroviensis CBS 8886 cont1.40, whole genome shotgun sequence
KwoMan/1-116 -----------GAAATGATTATCCAAACAAAC-TATATGTAATCTGTCAATCCACGGAACAGACGCTTCTTCCTGC---------TCCT----------GCCGGAAGTCGACAGCCTCAGCCGATAA----CGTTTGACCCT------AATGATCGT-----------------------------------------------
#=GS HolNya/1-129 DE BCIT01000010.1:c424537-424409 Holtermanniella nyarrowii DNA, scaffold: scaffold_9, strain: JCM 11471, whole genome shotgun sequence
HolNya/1-129 -AGCTCAGCTTGAAATGATTATTACA-CATTC-------TAATCTGTCAATCCCCGGAAAAGACGCCCTCTTT-------------CGA-------------GAGGG----AAGCCTCTGCCGACAA---CCGAATGAGCTAAATC--TATGATCACCCTTTCTCCTGTTCTT-------------------------------
#=GS SchPom-snoR02/1-84 DE Schizosaccharomyces_pombe snoR02
SchPom-snoR02/1-84 ----------TCGAATGATTAAATGTATGAA-TTTTTATCAATCTGTCAATCCCCTGAGATTTTC------------------------------------------------------ATTGAAGAGAATATTCATCGAAT------TATGACG-------------------------------------------------
#=GS HumSap-SNORD110/1-75 DE Homo_sapiens SNORD110 HBII-55
HumSap-SNORD110/1-75 ---------TTGCAGTGATGACTT----GCG----AATCAAATCTGTCAATCCCCTGAGTGCAATC-----------------------------------------------------ACTGATGTC-TCCATGTC-----------TCTGAGCAA-----------------------------------------------
#=GC SS_cons --------------------------------------------------------------------((((((---------------------------))))))-------------------------------------------------------------------------------------------------
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