SNORD79¶
SNORD79_intronic-boxCDsnoRNA-83nt
within 1st intron of CNC00470 (CNAG_03038)
C. neoformans
>AE017343.1:c133672-133591 Cryptococcus neoformans var. neoformans JEC21 chromosome 3 sequence TCTAAGATGAGACCTATAACTGCAAGTGGGAATCTCTCCTAAAACAATTGAGGACACAATATTTACTTAG CACCTCTGATCC
snR40_snR56¶
snR40_snR56_intronic-boxCDsnoRNA-96nt
Within 2nd intron of CNC00470 (CNAG_03038)
Predicted target D’ guide in 18S rRNA: gtgGtgcatgg
Like yeast snR40 (D' guide)
Predicted target D guide in 18S rRNA: caGgtctgtga
Like yeast snR56 (D' guide), human SNORD25 (but guide on different D/D’ box)
In Tremellomycetes two separate snoRNAs are present with specificities like yeast snR40, which modifies two sites in 18S rRNA [Yang-2015]. Possibly the yeast function has been divided over snR40_snR56, to modify h34, and snR40-like to methylate the second site found for yeast snR40.
Overlapping basepair interactions between h34 in 18S rRNA and snR40, snR4 and snR55 in yeast [from Sharma-2017]¶
>AE017343.1:c133288-133194 Cryptococcus neoformans var. neoformans JEC21 chromosome 3 sequence ACCCCAATGATATAAACAATCATGCACCACGCTTAGCCAGCCATACGGCGCGGCCATGCGGAAAAAACTG ATTCACAGACCTGATATGAGGGGTC
Image source SNORD79:
# STOCKHOLM 1.0
#=GF RW van Nues, June 2023
#=GF https://coalispr.codeberg.page/paper
SNORD79/1-86 ---TCTCTAAGATGAGACCTATAAC---TGCAAGTGGGAATCTCTCCTAAAA-CAA--TTGAGGACACAA--TATTTACTTAGCACCTCTGATCCTT-
#=GS H99/1-83 DE CP003822.1:c142621-142539 Cryptococcus neoformans var. grubii H99 chromosome 3, complete sequence
H99/1-83 -----TCTAAGATGAGACCTATAAA---TGCAAGTGGGAATCTCTCCTAAAA-CAA--TTGAGGACACAA--TATTTGCTTAGCACCTCTGACCCT--
#=GS WM276/1-85 DE CP000288.1:1836161-1836245 Cryptococcus gattii WM276 chromosome C, complete sequence
WM276/1-85 ----TTCTAAGATGAGACCTATAAA---TGCAAGTGGGAATCTCTCCTAAAA-CAA--TTGAGGACACAA--TATTTACTTAGCACCTCTGATCCTT-
#=GS EN28/1-81 DE CP025719.1:c142688-142608 Cryptococcus neoformans strain EN28 chromosome 3, complete sequence
EN28/1-81 -------TAAGATGAGACCTATAAA---TGCAAGTGGGAATCTCTCCTAAAA-CAA--TTGAGGACACAA--TATTTGCTTAGCACCTCTGACCTT--
#=GS R265/1-84 DE CP025759.1:2078805-2078888 Cryptococcus gattii VGII R265 chromosome 1, complete sequence
R265/1-84 -----TTCAAGATGAGATCTATAAA---TGCAAGTGGGAATCTCTCCTAAAA-CAA--TTGAGGACACAA--TATTTACTTAGCACCTCTGATCCTT-
#=GS PasPL2/1-84 DE JAMFRE010000023.1:c187681-187598 Pascua sp. PL2904B ctg_23, whole genome shotgun sequence
PasPL2/1-84 ----TTTCAAGATGAGACCATCTAT---TGCAAGTGGGAATCTCTCCTAAAA-CAA--TTGAGGACACCACAA--TTACTTAGCACCTCTGATTCC--
#=GS TriGue/1-84 DE BCJX01000004.1:817277-817360 Trichosporon guehoae DNA, scaffold: scaffold_3, strain: JCM 10690, whole genome shotgun sequence
TriGue/1-84 ----TTTCAAGATGAGACCATCTAT---TGCAAGTGGGAATCTCTCCTAAAA-CAA--TTGAGGACACCACAA--TTACTTAGCACCTCTGATTCC--
#=GS TriGam/1-83 DE BCJN01000004.1:c1372052-1371970 Trichosporon gamsii DNA, scaffold: scaffold_3, strain: JCM 9941, whole genome shotgun sequence
TriGam/1-83 ----TTTCAAGATGAGACTCAA------TGCAAGTGGGAATCTCTCCTAAAA-CAA--TTGAGGACACCCAAC-TATAC-TAGCATCTCTGAACCATC
#=GS VanPse/1-82 DE CP086720.1:958324-958405 Vanrija pseudolonga isolate DUCC4014 chromosome 7
VanPse/1-82 ----TTTCAAGATGAGATTAAT------TGCAAGTGGGAATCTCTCCTAA-TACAC--TTGAGGACACCC--TTTTTACTTTGCGCTTCTGATACTT-
#=GS VanHum/1-81 DE BFAH01000024.1:338700-338780 Vanrija humicola UJ1 DNA, scaffold25, whole genome shotgun sequence
VanHum/1-81 -----TTCAAGATGAGATAAAT------TGCAAGTGGGAATCTCTCCTAA-TACAC--TTGAGGACACCC--TTTTTACTTTGCGCTTCTGATCCTT-
#=GS KwoHev/1-86 DE ASQC01000046.1:c85899-85814 Kwoniella heveanensis CBS 569 cont2.46, whole genome shotgun sequence
KwoHev/1-86 -----TCTAAGATGAGAAACTATAAT--TGCAAGTGGGAATCTCTCCTAAA-TCAC--TTGAGGACATAAAA-CAATACTTAGCACCTCTGATCATT-
#=GS KwoSha/1-85 DE NQVO01000028.1:c189078-188994 Kwoniella shandongensis strain CBS 12478 scaffold00028, whole genome shotgun sequence
KwoSha/1-85 -----TTGAAGATGAGACTTTACAAT--TGCAAGTGGGAATCTCTCCTAAA-CCAT--TTGAGGATATA--TTATATACTTAGCACCTCTGAACCTC-
#=GS CryDep/1-82 DE AWGL01000002.1:c1393767-1393686 Cryptococcus depauperatus CBS 7855 supercont2.2, whole genome shotgun sequence
CryDep/1-82 ----TATTAAGATGAGATATTTCAAT--TGCAAGTGGGAATCTCTCCTAAT-TCAA--TTGAGGAAACC----TTTTGCTTTGCACCTCTGAACC---
#=GS KwoDej/1-85 DE ASCJ01000023.1:c1158231-1158147 Kwoniella dejecticola CBS 10117 cont1.23, whole genome shotgun sequence
KwoDej/1-85 -----TCTATGATGAGACCAAATATAAATGCAAGTGGGAATCTCTCCTAAA-CCAA--TTGAGGAAACA--TAAAATACTTAGCACCTCTGATCC---
#=GS KwoPin/1-86 DE ASCL01000037.1:35372-35457 Kwoniella pini CBS 10737 cont1.37, whole genome shotgun sequence
KwoPin/1-86 -----TTTATGATGAGACTAAATATAA-TGCAAGTGGGAATCTCTCCTAAAA-TAA--TTGAGGAAA--TATAAAATACTTAGCGACTCTGACTCGT-
#=GS TriVee/1-82 DE BCKJ01000002.1:c3164935-3164854 Trichosporon veenhuisii DNA, scaffold: scaffold_1, strain: JCM 10691, whole genome shotgun sequence
TriVee/1-82 -----TTCAGGATGAGATCAAT------TGCAAGTGGGAATCTCTCCTAA-TACAC--TTGAGGACACCC-TACTATACTTAGCATCTCTGATCCTC-
#=GS KocImp/1-86 DE NBSH01000011.1:c578577-578492 Kockovaella imperatae strain NRRL Y-17943 BD324scaffold_11, whole genome shotgun sequence
KocImp/1-86 -----TTCCGGATGAGACTATCATTT--TGCAAGTGGGAATCTCTCCTAATATCAC--TTGAGGATCACA--TTTATACTTAGCACCTCTGATCATC-
#=GS PapTer/1-80 DE JAHXHD010000182.1:c3579-3500 Papiliotrema terrestris strain LS28 scaffold-181, whole genome shotgun sequence
PapTer/1-80 ------TCCGGATGAGACTATAT-----TGCAAGTGGGAATCTCTCCTAAAA-CAA--TTGAGGACAACCA--TAAATACTAGCACCTCTGATCAT--
#=GS PapTre/1-81 DE JDSR01000634.1:c9628-9548 Papiliotrema laurentii RY1 contig_655, whole genome shotgun sequence
PapTre/1-81 -----TTCCGGATGAGACATCTTT----TGCAAGTGGGAATCTCTCCTAAAA-CAA--TTGAGGACAACCAC--TATACTTAGCACCTCTGACCC---
#=GS BulAlb/1-85 DE CAMYTR010000136.1:317050-317134 Bullera alba genome assembly, contig: jcf7180000012237, whole genome shotgun sequence
BulAlb/1-85 ----TTTCCGGATGAAACTCTATT----TGCAAGTGGGAATCTCTCCTAAA-TCAT--TTGAGGATACAAAAC-TATACTTAGCACCTCTGAACATC-
#=GS CryFla/1-80 DE CAUG01000390.1:24627-24706 Cryptococcus flavescens NRRL Y-50378 WGS project CAUG00000000 data, contig NODE_746_length_79055_cov_47_112000, whole genome shotgun sequence
CryFla/1-80 ------TCCGGATGAGACTATAT-----TGCAAGTGGGAATCTCTCCTAAAA-CAA--TTGAGGACAATTATAAA-TAC-TAGCAACTCTGATCAT--
#=GS CryGC_1/1-82 DE JALPCD010000078.1:c15459-15378 Cryptococcus sp. GC_Crypt_1 78, whole genome shotgun sequence
CryGC_1/1-82 -----TTCCGGATGAGACATACT-----TGCAAGTGGGAATCTCTCCTAAA-CCAT--TTGAGGACAACCAAC-TATAC-TAGCACCTCTGATCTCT-
#=GS TakKor/1-84 DE BCKT01000006.1:118638-118721 Takashimella koratensis DNA, scaffold: scaffold_5, strain: JCM 12878, whole genome shotgun sequence
TakKor/1-84 -----TTCCGGATGAGACATCTTTT---TGCAAGTGGGAATCTCTCCTAAA-TACA--CTGAGGACAACC-TCTTATACTTAGCACCTCTGAACCT--
#=GS TriFae/1-81 DE JXYK01000006.1:c872741-872661 Trichosporon faecale strain JCM 2941 scaffold_0006, whole genome shotgun sequence
TriFae/1-81 ----TTCTCGGATGAGACACAAAC----TGCAAGTGGGAATCTCTCCTAAA-TCAT--TTGAGGACACCC--TTAATAT-TTGCACCTCTGAACA---
#=GS TriCor/1-80 DE JXYL01000002.1:1636090-1636169 Trichosporon coremiiforme strain JCM 2938 scaffold_0002, whole genome shotgun sequence
TriCor/1-80 -----TCCTGGATGAGACACAATC----TGCAAGTGGGAATCTCTCCTAAA-CCAT--TTGAGGACACCC--TTTATAT-TTGCACCTCTGATAT---
#=GS SaiJCM/1-78 DE BCLC01000002.1:c945392-945315 Saitozyma sp. JCM 24511 DNA, scaffold_1, whole genome shotgun sequence
SaiJCM/1-78 -----TTTCGGATGAGACAATT------TGCGAGTGGGAATCTCTCCTAAA-TCAC--TTGAGGACAACC---TTTTACTTTGCACCTCTGATCC---
#=GS SaiPod/1-80 DE CABVUB010000001.1:104143-104222 Saitozyma podzolica genome assembly, contig: NODE_1_length_1044407_cov_28.3483, whole genome shotgun sequence
SaiPod/1-80 ------TTCGGATGAGACAATC------TGCGAGTGGGAATCTCTCCTAAA-TCAC--TTGAGGACAACCTTCTTTTACTTTGCACCTCTGATCC---
#=GS CryGC_2/1-80 DE JALPCC010000014.1:c7039-6960 Cryptococcus sp. GC_Crypt_2 iso00_70_14, whole genome shotgun sequence
CryGC_2/1-80 -----TTCCGGATGAGTTTTAAAT----AGCAAGTGGGAATCTCTCCTAAA-TCAA--TTGAGGACACCATAA--TTACT-AGCACCTCTGAATT---
#=GS TriGra/1-84 DE BCJO01000004.1:1024371-1024454 Trichosporon gracile DNA, scaffold: scaffold_3, strain: JCM 10018, whole genome shotgun sequence
TriGra/1-84 ----TTCAAGGATGATACCTAAAT----AGCAAGTGGGAATCTCTCCTAAA-TCAA--TTGAGGACACCCAAA--TTACTTAGCAGCTCTGATCTAC-
#=GS ApiAki/1-81 DE PQXP01000086.1:c40341-40261 Apiotrichum akiyoshidainum strain HP2023 Contig1069, whole genome shotgun sequence
ApiAki/1-81 ----TTCAAGGATGATATCTAAAT----AGCAAGTGGGAATCTCTCCTAAAA-CAA--TTGAGGACACATAAA--TTACT-CGCATCTCTGATCC---
#=GS CutCya/1-83 DE BEDZ01000004.1:c861795-861713 Cutaneotrichosporon cyanovorans DNA, scaffold: scaffold_4, strain: JCM_31833, whole genome shotgun sequence
CutCya/1-83 -----TCTCGGATGATACTCTACA----AGCAAGTGGGAATCTCTCCTAAA-TCAT--TTGAGGACAACC--TATATACT-CGCACCTCTGATCCCAT
#=GS TriLai/1-81 DE BCKV01000013.1:119279-119359 Trichosporon laibachii DNA, scaffold: scaffold_12, strain: JCM 2947, whole genome shotgun sequence
TriLai/1-81 ----TTTAAGGATGATATTTAAAT----AGCAAGTGGGAATCTCTCCTAAAA-CAA--TTGAGGACACCTAAA--TTACT-AGCATCTCTGATCT---
#=GS TriMon/1-82 DE BCFV01000002.1:435168-435249 Trichosporon montevideense DNA, scaffold: scaffold_1, strain: JCM 9937, whole genome shotgun sequence
TriMon/1-82 -----TTCAGGATGAGATTTATAA----AGCAAGTGGGAATCTCTCCTAA-TACTT--TTGAGGACACCCGA--TTTACTTAGCATCTCTGACTCT--
#=GS ApiDom/1-82 DE BCFW01000002.1:c888523-888442 Apiotrichum domesticum DNA, scaffold: scaffold_1, strain: JCM 9580, whole genome shotgun sequence
ApiDom/1-82 -----TTCAGGATGAGATTTATAA----AGCAAGTGGGAATCTCTCCTAA-TATCT--TTGAGGACACCCAA--TTTACTTAGCATCTCTGACTCT--
#=GS ApiMyc/1-79 DE CP049823.1:2525998-2526083 Apiotrichum mycotoxinovorans strain GMU1709 chromosome III
ApiMyc/1-79 -----TTAAGGATGAGATCAAT------CGCAAGTGGGAATCTCTCCGAA-CACAC--TTGAGGACACCCAA--TTTACTTAGCATCTCTGATCC---
#=GS CutCut/1-79 DE LTAL01000631.1:25954-26032 Cutaneotrichosporon cutaneum strain ACCC 20271 contig631, whole genome shotgun sequence
CutCut/1-79 -----TTAAGGATGAGATCAAT------CGCAAGTGGGAATCTCTCCGAA-CACAC--TTGAGGACACCCAA--TTTACTTAGCATCTCTGATCC---
#=GS NaeEnc/1-78 DE MCFC01000074.1:c79798-79721 Naematelia encephala strain 68-887.2 BCR39scaffold_74, whole genome shotgun sequence
NaeEnc/1-78 -----TTTCGGATGAGACCAAT------CGCAAGTGGGAATCTCTCCTAAAA-CCA--TTGAGGACACCACA---TTACTTAGCGTTTCTGAATT---
#=GS TriPor/1-83 DE BCJG01000001.1:c3687752-3687670 Trichosporon porosum DNA, scaffold: scaffold_0, strain: JCM 1458, whole genome shotgun sequence
TriPor/1-83 -----TTCAAGATGATACACAAAA----CGCAAGTGGGAATCTCTCCTAAAA-TAA--TTGAGGACAACCTAC-TATACTTAGCACCTCTGAACTA--
#=GS KwoBes/1-87 DE ASCK01000005.1:c581033-580947 Kwoniella bestiolae CBS 10118 cont1.5, whole genome shotgun sequence
KwoBes/1-87 -----TCCCTGATGAGACTAAATATAATGCAAAGTGGGAATCTCTCCTAAAA-CAA--TTGAGGATATATAAAA--TACTTAGCACCTCTGATCTAT-
#=GS XanDen/1-85 DE LN483332.1:152375-152460 Xanthophyllomyces dendrorhous genome assembly Xden1, scaffold Scaffold_249
XanDen/1-85 ---CTTGAATGATGATACTTTAT----TGCAAAGTGGGAATCTCTCCTAAA-TCAA--TTGAGGACAACC-TTTTTTACTTTTGCTCTCTGACCTC--
#=GS KwoMan/1-84 DE ASQE01000056.1:52877-52960 Kwoniella mangroviensis CBS 8507 cont2.55, whole genome shotgun sequence
KwoMan/1-84 -----TCTCTGATGAGACTAAATATAATGCAAAGTGGGAATCTCTCCTAAA-TCAA--TTGAGGAAATATAAAA--TACTTAGCACCTCTGATC----
#=GS CryGC_5/1-85 DE JALPBZ010000094.1:29765-29849 Cryptococcus sp. GC_Crypt_5 iso00_58_94, whole genome shotgun sequence
CryGC_5/1-85 -------TAAGATGAGTCACTTGTAATTGCAAAGTGGGAATCTCTCCTAAA-TCAT--TTGAGGATACATAAGA--TACTTAGCACCTCTGATCTTT-
#=GS CryGC_3/1-85 DE JALPCB010000026.1:87930-88014 Cryptococcus sp. GC_Crypt_3 iso00_45_26, whole genome shotgun sequence
CryGC_3/1-85 ------TTAAGATGAGTCACTTGTAATTGCAAAGTGGGAATCTCTCCTAAA-TCAT--TTGAGGATACATAAGA--TACTTAGCACCTCTGATCTT--
#=GS CryFlo/1-87 DE NIDF01000082.1:67961-68047 Cryptococcus floricola strain DSM 27421 scaffold6.82, whole genome shotgun sequence
CryFlo/1-87 -----TCAAAGATGAGACTTTATCAAACGCAAAGTGGGAATCTCTCCTAAA-CCAT--TTGAGGATACTTTATA--TACTTAGCACCTCTGAACCTT-
#=GS CryWin/1-87 DE AWGH01000002.1:c1136453-1136367 Cryptococcus wingfieldii CBS 7118 supercont1.2, whole genome shotgun sequence
CryWin/1-87 -----TCAAAGATGAGACTCTATCAAACGCAAAGTGGGAATCTCTCCTAAA-CCAT--TTGAGGAAACTTTATA--TACTTAGCACCTCTGAACCTT-
#=GS CryAmy/1-87 DE MEKH01000001.1:c2109042-2108956 Cryptococcus amylolentus CBS 6273 supercont2.1, whole genome shotgun sequence
CryAmy/1-87 -----TCAAAGATGAGACTTTATTAAATGCAAAGTGGGAATCTCTCCTAAA-CCAT--TTGAGGATACTTTATA--TACTTAGCACCTCTGAACCTT-
#=GS CryGC_6/1-84 DE JALPBY010000032.1:112830-112913 Cryptococcus sp. GC_Crypt_6 iso00_61_32, whole genome shotgun sequence
CryGC_6/1-84 -----TCTACGATGAGACTCTTTTAATTGCAAAGTGGGAATCTCTCCTAAA-CCAT--TTGAGGATACATAAGA--TACTTAGCACCTCTGATC----
#=GS CryGC_7/1-86 DE JALPBX010000030.1:112831-112916 Cryptococcus sp. GC_Crypt_7 iso00_79_30, whole genome shotgun sequence
CryGC_7/1-86 -----TCTACGATGAGACTCTTTTAATTGCAAAGTGGGAATCTCTCCTAAA-CCAT--TTGAGGATACATAAGA--TACTTAGCACCTCTGATCTT--
Annot/1-34 --------RTGATGA-----------------tcacccttagag-CTGA---------RTGATGA-----------------------CTGA------
RatRat-SNORD79/1-75 -----TTAGTGATGATCAATTAAGTTAAAACAGATGGGAATCTCTCTGAACAACAT--TGGAGATTGA------------TTGTTAAGCTGAAA----
#=GS HomSap-SNORD79/1-85 DE Homo_sapiens SNORD79
HomSap-SNORD79/1-85 TACTGTTAGTGATGATTTTAAAA-TTAAAGCAGATGGGAATCTCTCTGAGAAAGAAAATGGAGATTAATC-------------TTAAACTGAAACAGTA
//
Image source snR40_snR56:
# STOCKHOLM 1.0
#=GF RW van Nues, June 2023
#=GF https://coalispr.codeberg.page/paper
Annot/1-52 ---------------------------------------------------------------RTGA--TGA----------gGUACGUGGUG-CTGA---------------------------RTGATGA--------------aGUGUCUGGACa-CTGA------------------------------------------------------------------------------------CTGA---------------------------------YAG----------------------------------------------------------------------
#=GS snR40_snR56/1-96 DE intronic-boxCDsnoRNA-96nt-in-CNC00470 ncrna 3:133192:133288:-1
snR40_snR56/1-96 ---------------------------------------------------------ACCCCAATGATATAAA------CAATCATGCACCACGCTTAGCCAGCC--ATAC--GGCGCGGCC---ATGCGGAAA-AAACTGAT---TCACAGACCTGATATGAGGGGTCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS intron-in-CNC00470/49-250 DE intron-with-boxCDsnoRNA-145nt-in-CNC00470 ncrna 3:133143-133288:-1
intron-in-CNC00470/49-250 TGATCCGGAGGTGAGCCGCATTTCTTACCTCATTTTTCTTCATTTTCGTTTCATGGGACCCCAATGATATAAA------CAATCATGCACCACGCTTAGCCAGCC--ATAC--GGCGCGGCC---ATGCGGAAA-AAACTGAT---TCACAGACCTGATATGAGGGGTCCCTTACTTTTTCATCATTTTATATCTCT-----------------------------------GACGATGATCAT-CGCTGACTTA------------------------------------------------------------------------------------------------------
#=GS H99/1-149 DE CP003822.1:c142238-142090 Cryptococcus neoformans var. grubii H99 chromosome 3, complete sequence
H99/1-149 ---------------------------------------------------------ACCCCAATGATATAAA------CAATCATGCACCACGCTTAGCCAGCC--ATAC--GGCGCGGCC---ATGCGGAAA-AAACTGAT---TCACAGACCTGATATGAGGGGTCCCTTTTTTTTCATCATTATTTTATCATCTCC--------------------------------GACGATGATCATCCGCTGACTTG------------------------------------------------------------------------------------------------------
#=GS CryWin/1-159 DE CP034262.1:111800-111958 Cryptococcus wingfieldii strain CBS7118 chromosome 2, complete sequence
CryWin/1-159 ---------------------------------------------------------ATCCCAATGATTCAAC------AAATCATGCACCACGCTTAGCCAGGC--AATT--GTCGCGGCC---ATGCTGAAACAA-CCGAT---TCACAGACCTGATATGAGGGATCCCTTTTTTTCATTTATTTTATTTGTCTGATTGT-----------------------------GACTAGTGAGCTCTTGCTGACTCGTATAATC-----------------------------------------------------------------------------------------------
#=GS R265/1-148 DE CP025759.1:2079187-2079334 Cryptococcus gattii VGII R265 chromosome 1, complete sequence
R265/1-148 ---------------------------------------------------------ACCCCAATGATATAAA------CAATCATGCACCACGCTTAGCCAGCC--ATAC--GGCGCGGCC---ATGCGGAAA-AAACTGAT---TCACAGACCTGATATGAGGGGTCCCTTTTATTTATTACTTTTGTAATATCT-----------------------------------GATGAAGATCGCCCGCTGACTTAAT----------------------------------------------------------------------------------------------------
#=GS WM276/1-148 DE CP000288.1:1836547-1836694 Cryptococcus gattii WM276 chromosome C, complete sequence
WM276/1-148 ---------------------------------------------------------ACCCCAATGATATAAA------CAATCATGCACCACGCTTAGCCAGCC--ATAC--GGCGCGGCC---ATGCGGAAA-AAACTGAT---TCACAGACCTGATATGAGGGGTCCCTTTTTATTTTTTACTTTTATAATCTCC----------------------------------GATGATGATCATCCGCTGACTTGA-----------------------------------------------------------------------------------------------------
#=GS PapLau/2-147 DE JDSR01000634.1:c9270-9124 Papiliotrema laurentii RY1 contig_655, whole genome shotgun sequence
PapLau/2-147 ---------------------------------------------------------GCCCCAAGGATATAAA------ACATCATGCACCACGCTTAGCCAGCC--ATAC--GGCGCGGCC---ATGCGGAAA-AACCTGAT---TCACAGACCTGATATGAGGGGCCCTCTTCTCTTGACGAGATTTTGTATAT------------------------------------------GGACATTTGCTGACGCAAAGATCC-----------------------------------------------------------------------------------------------
#=GS KwoSha/1-169 DE NQVO01000028.1:c188668-188500 Kwoniella shandongensis strain CBS 12478 scaffold00028, whole genome shotgun sequence
KwoSha/1-169 ---------------------------------------------------------ACCCCAAAGAT-TAAA------CAATCATGCACCACGCTTAGCCAGCC--TTAC--GGCGTGGCC---ATGCGGAAACAACCTGAT---TCACAGACCTGATATGAGGGGCCCTCCATATTCCATCGTTTTCTCATTCCTTCAACCATTCT-------------GCAGCACTCCATTGAGAAATATCATACTGACACAC-----------------------------------------------------------------------------------------------------
#=GS KwoHev/1-225 DE ASQC01000046.1:c85393-85169 Kwoniella heveanensis CBS 569 cont2.46, whole genome shotgun sequence
KwoHev/1-225 ---------------------------------------------------------ACCCCAATGATATGAA------ACATCATGCACCACGCTTAGCCAGCCT-TAGC-GGGCGCGGCC---ATGCGGAAACAA-CTGAT---TCACAGACCTGATATGAGGGGCCACCATATACCACAATTTTCCCCAGAGTCTATCTGAAATCCTCTTTTTGGAGTGTATTGCCGAAGCGAAGAGCTGTGTGCTGACGATGCCGTGTCACGCCCTCTCTTG--------TAGATCCTCGACACTAATGCG----------------------------------------------------
#=GS KwoMan/1-169 DE ASQF01000020.1:240129-240297 Kwoniella mangroviensis CBS 8886 cont1.20, whole genome shotgun sequence
KwoMan/1-169 ---------------------------------------------------------ACCCCAAGGATTTAAA------CCATCATGCACCACGCTTAGCCAGCTC-ACA--GAGCGCGGCC---ATGCGGAAGCAA-CTGATAC-TCACAGACCTGATATGAGGGGCATTCGTGTATTCATATTTTTTGTTTGCATCT---------------AGTCAGACATCGTAATATATACGAGATGAATCACTGACAAC------------------------------------------------------------------------------------------------------
#=GS TreYok/2-216 DE BRDC01000026.1:1115831-1116046 Tremella yokohamensis NBRC 100148 DNA, KCNB35TY.26, whole genome shotgun sequence
TreYok/2-216 ---------------------------------------------------------TCCCCAAAGAT-TCAA------CATTCATGCACCACGCTTAGCCAGCC--TTAC--GGCGCGGCC---ATGCGGAAACAA-ATGAACA--CACAGACCTGTTATGAGGGGACCCTATCGAAACTTTTCTCTCACT-------------------------------GCTCCGAATATTGGCTCGTCATAGACGATAGCTTATCGT----------------------CAGATCCTCGACAACAACCCACCTCTCCTCTTCCACCTTCACCTTCTCCGACTGATCG---------------
#=GS PapTer/2-195 DE JAHXHD010000182.1:c3229-3035 Papiliotrema terrestris strain LS28 scaffold-181, whole genome shotgun sequence
PapTer/2-195 ---------------------------------------------------------TCCCCGAGGATTTTAA------ACATCATGCACCACGCTTAGCCAGCT---TC---GGCGCGGCC---ATGCGGAAATA-CCTGATAA--CACAGACCTGATATGAGGGGTCGCGCACACTGCAACGTTTCCTTT-------------------------------------------------GTCAGGCTGAGCGCTGACATT----------------------CAGATCCTTGACACGAACCCGCCGCTTCTGTTCCACCTGCACCTACTGCGCCTGGT-----------------
#=GS CryFag/2-192 DE BCHU01000014.1:814669-814860 Cryptococcus fagi DNA, scaffold: scaffold_13, strain: JCM 13614, whole genome shotgun sequence
CryFag/2-192 ---------------------------------------------------------TCCC-AATGAT-TCAAC-----ACATCATGCACCACGCTTAGCCAGCT---TC---GGCGTGGCC---ATGCGGAAACAA-CCGATTT-TCACAGACCTGATATGAGGGACCATCTTGCGGCTATCTGTTTT------------------------------GAGATTGAATAGTTATTTGAGCCTTGGACTGATCCATTCAACTT---------------------TAGATCCTTGACACGAATCCCCCATTACTTTTT----------------------------------------
#=GS BulALb/2-170 DE CAMYTR010000136.1:317430-317599 Bullera alba genome assembly, contig: jcf7180000012237, whole genome shotgun sequence
BulALb/2-170 ---------------------------------------------------------TCCCCAAGGATATGAA------CCATCATGCACCACGCTTAGCCAGC---TTAAT--GCTTGGCC---ATGCTGAAG-AAAATGATC--TCACAGACCTGATATGAGGGGTATACAATCCTCCTCTTTCTCTC------------------------------ACGTGGAAGGCTAGGAGAAGTATCAAGCTGATCTCGTGCTCA----------------------TAGATTCTCGA--------------------------------------------------------------
#=GS KwoPin/1-284 DE ASCL01000037.1:35847-36130 Kwoniella pini CBS 10737 cont1.37, whole genome shotgun sequence
KwoPin/1-284 ---------------------------------------------------------ACCCCAAGGATTTAAC------AAATCATGCACCACGCTTAGCCAGCTC-AAA--GAGCGCGGCC---ATGCTGAAACA--ACGATC--TCACAGACCTGATATGAGGGGCATCCATCTATCTTATTTCATTCTTTTTATCATTTGGAAATACATCGTGGTTGATTGAAAATATTGAGAAGTATAAAAAGCTAATCTGCTATTTATATTTACTTTTGGAAATAATTATAGATACTAGATACCAATCCACCATTATTATTTCATCTTCACTTATTAAGACTTATTGAATTAATTAGATCAG
#=GS NaeAur/1-171 DE JAKFAO010000003.1:c144643-144473 Naematelia aurantialba strain NX-20 Contig3, whole genome shotgun sequence
NaeAur/1-171 ---------------------------------------------------------TCCCCGATGAAAAGA-------CAATCATGCACCACGCTTAGCCCGCT---TC---GGCGTGGCC---ATGCGGAAACAC-CTGATT--TTACAGACCTGATATGAGGGGACTCAACCC-AACGCTAGATTTCTCTT-----------------GCCACTGCATACTTGTCCTGTCCTGGATGCAAAAAGCTGATACCGGC--------------------------TAGATTC------------------------------------------------------------------
#=GS SaiPod/6-207 DE RSCD01000010.1:130393-130599 Saitozyma podzolica strain DSM 27192 scaffold_10, whole genome shotgun sequence
SaiPod/6-207 ---------------------------------------------------------ACCCCG-AGATTAGATC-----GTATCATGCACCACGCTTAGCCGGCTC-TTAC-GAGCAAGGCC---ATGCTGAAATACCACGAC---TCACAGACCTGATATGAGGGGTCCCTACCTTTCTGCCGATTGCTGCTC------------------------------GGCGATACGACGAG-CGGCTCCGCTGACGCAGAGTA------------------------CAGATCCTCGACACGAACCCACCCCTGCTTTTCCATCTCCACCT-----------------------------
#=GS TreMes/2-203 DE AFVY01000063.1:c129062-128860 Tremella mesenterica DSM 1558 strain Fries TREMEscaffold_1_Cont63, whole genome shotgun sequence
TreMes/2-203 ---------------------------------------------------------TCCCCAAAGATTTAAC------AAA-CATGCACCACGCTTAGCCGGCT---TC---GGCAAGGCC---ATGCTGAAATAC-CTGTTA---CACAGACCTGATATGAGGGGTCATCTACAATCTATCCTTTCCTTGTCTTCTGTCTC----------------------------------ACGGACAATGCTGACATGA----------------------------GAGATATTGGACAACAACCCTCCCCTTCTTTTCCACCTTCACCTACTCCGTCTCATC----------------
#=GS VanFra/2-212 DE BEDY01000006.1:520349-520560 Vanrija fragicola DNA, scaffold: scaffold_6, strain: JCM 1530, whole genome shotgun sequence
VanFra/2-212 ---------------------------------------------------------GCCCCAAGGATATGAA------ACATCATGCACCACGCTTAGCCGCCC---TC---GGGAAGGCC---ATGCTGAAACAC-CTGAT---TCACAGACCTGATATGAGGGGCCCTTCTATCTTCATCCTTTATTGTT--------------------------------------------AGAATACTGGCTGACAGAAAA--------------------------CAGATTCTTGATACCAAGACGGATATCCTCTTCCATCTTTTCCTCCTGCGGCTCATCGAGCTCATTCGCGAGG
#=GS VanHum/1-202 DE BCJF01000007.1:946262-946463 Vanrija humicola DNA, scaffold: scaffold_6, strain: JCM 1457, whole genome shotgun sequence
VanHum/1-202 ---------------------------------------------------------GCCCCAATGATATGAA------CCATCATGCACCACTCTCAGCCGGCT---TC---GGCAAGGCC---ATGCGGAAATAC-CTGATT--TCACAGACCTGATATGAGGGGCCATTATATTTCTCTGCTTTCAGCGATTCGTTT-----------------------------------------CAGGCGCTAACAATGG---------------------------CAGATACTCGACACCAACCCTCCGCTCCTCTTCCACCTGTTCCTATTGCGATTGATCGAGC------------
#=GS ApiMyc/6-173 DE CP053622.1:c2380376-2380204 Apiotrichum mycotoxinovorans strain CICC 1454 chromosome 3
ApiMyc/6-173 ---------------------------------------------------------GCCCCAAGGATATGAA------CCATCATGCACCACTCTCAGCCGGC---TTCGT--GCAAGGCC---ATGCGGAAACAC-CTGATTTATCACAGACCTGATATGAGGGGCCCAACCAAGTCTTTTTTTTTTGTTTCT-------------------------------------------------CAACTGACACAT----------------------------CAGATCCTCGATACCAACCCTACGCTTTTGTTC----------------------------------------
#=GS VanPse/1-202 DE CP086720.1:958693-958894 Vanrija pseudolonga isolate DUCC4014 chromosome 7
VanPse/1-202 ---------------------------------------------------------GCCCCAATGATATGAA------CCATCATGCACCACTCTCAGCCGGC---TTCG---GCAAGGCC---ATGCGGAAATA-CCTGATT--TCACAGACCTGATATGAGGGGCCATCATCTTTCACTGCTTTTAGTGTTTGCTCC----------------------------------------AGAGAAGCTAACGAGAG---------------------------CAGATTCTGGACACCGACTCTACGCTACTCTTCCACCTGTTTCTCCTGCGATTGATCGAG-------------
SacCer-snR56/1-86 --------------------------------------------------------------------------------------------------------------------------AACATGATGAAAAAA--TATATTAACACAGACCTGTACTGAACTTTTCGAAGTTTTGCAGATAACAATATTGCTTTTTTTCTCTGACT---------------------------------------------------------------------------------------------------------------------------------------------------
#=GS HomSap-SNORD25/1-67 DE Homo Sapiens U25
HomSap-SNORD25/1-67 ------------------------------------------------------------------------------------------------------------------------TTCCTATGATGAGGACC------TTTTCACAGACCTGTACTGAGCTC--------CGTGAGGATAAATAACT------------CTGAGGAGA------------------------------------------------------------------------------------------------------------------------------------------------
Annot-snR40/12-61 ---------------------------------------------------------------RTGA--TGA---------CGGUACGUGGU--CTGA----------------GUGGGU-----RTGATGA---------------------------CTGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
SacCer-snR40/1-95 ------------------------------------------------------------TAAATGACGAGAAAA----AAGCTGTGCACCAGTCTGAACATGGATGCCACAAGTACTCAGGTGTCCTATGAAGCATT-----AAGTATACCCAAATTTCTGAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
SchPom-snR40/1-81 ------------------------------------------------------------TTAATGA--TGATACACTGTCTTCATGCACCAGTCTGA-------GACA----TTTATT-TGTCAGTGAAGAGG---------AACAGACCCTTTATTTCTGAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Annot-snR55-snR56/7-63 ----RTGATGA-------------------------------CTGA-----------------RTGA--TGA-----------GUACGUGGUGGUGCTGA-------------------------RTGATGA---------------------------CTGA-------------RTGATGA---------------------CTGA-----------------------------------------------------------------------------------------------------------------------------------------------------
SacCer-snR55/1-98 TTATTTGATGAATAGACACCACAATCGTCTTTTTTTTATCCGGCGATGATTCCTTTGGAATATGTGCCATGGATT----ACATCATGCATCACCATCTGATT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS HomSap-SNORD33/1-78 DE Homo Sapiens U33
HomSap-SNORD33/1-78 GCCGGTGATGAGAACTTCTCCCACTCA------------CATTCGAGTT------TCCCGACCATGAGATGAC------TCCACATGCACTACCATCTGAGG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GC SS_cons ----------------------------------------------------------((((-----------....--------------------(((-(((((-....-))))))))-------------------------------------------))))----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
//