SnoR30

../../_images/snor30_h99_igb.png

  • Intronic-boxCDsnoRNA-100nt-in-CNC03760 (CNAG_02754)

  • Within intron of transcript for small subunit ribosomal protein S12

  • Predicted target in 18S rRNA: (gggttcgattccgg)..gggGggagt

  • Accessory base pairing with another region in 18S predicted

  • Orthologue of plant SnoR30

../../_images/SnoR30-aligned.png

>AE017343.1:1181928-1182027 Cryptococcus neoformans var. neoformans JEC21 chromosome 3 sequence
TACTTCTTGATGAATATGGGACTCCCTCTTCGCATCCACGTGTGTCGACAACCCCTTGGAATCGAACCTA
CCCTCTTTGAGGGCAATCCGCTGTCTGATC







  • Image source:

# STOCKHOLM 1.0
#=GF https ://coalispr.codeberg.page/paper
#=GF RW van Nues, June 2023
Annot/1-45                 ----RTGATGA-------TGAGGGGGG-CTGA--------RTGATGA--------gg-CCTTAGCTTGGG----------------------------CTGA----
#=GS SnoR30/1-98 DE intronic-boxCDsnoRNA-98nt-in-CNC03760 ncrna 3:1181929:1182027:1
SnoR30/1-98                CTTCTTGATGAATATGGGACTCCCTCTTCGCATCCACGT-GTGTCGACAA-CCCCTT-GGAATCGAACCTACCCTCTTT-GAGGG--CAATCCGCTGTCTGATC--
#=GS H99/1-97 DE CP003822.1:c839728-839632 Cryptococcus neoformans var. grubii H99 chromosome 3, complete sequence
H99/1-97                   -TTCTTGATGAATATGGGACTCCCTCTTCGCATCCATGT-GTGTCGACAA-CCCCTT-GGAATCGAACCTACCCTCTTT-GAGGG--CAATCCGCTGTCTGATC--
#=GS WM276/1-99 DE CP000288.1:1150111-1150209 Cryptococcus gattii WM276 chromosome C, complete sequence
WM276/1-99                 CTTCTTGATGAATATGGGACTCCCTCTTCGCATCCATGT-GTGTCGACAA-CCCCTT-GGAATCGAACCTACCCTCTTT-GAGGG--CAATCCGCTGTCTGATTC-
#=GS R265/1-100 DE CP025759.1:1391708-1391807 Cryptococcus gattii VGII R265 chromosome 1, complete sequence
R265/1-100                 CTTCTTGATGAATATGGGACTCCCTCTTCGCATCCATGT-GTGTCGACAA-CCCCTT-GGAATCGAACCTACCCTCTTT-GAGGG--CAATCCGCTGTCTGATTCT
#=GS NaeAur/1-99 DE JAKFAO010000012.1:c450019-449921 Naematelia aurantialba strain NX-20 Contig12, whole genome shotgun sequence
NaeAur/1-99                TTTTCTGATGATCATGGGACTCCCTCTTCGCATCCAAGC-GTGTCGACAA-TCCCTT-GGAATCGAACCTACCCTCGCAAGAGGG--CCATCCGTCGTCTGATC--
#=GS VanHum/1-98 DE QKWK01000010.1:c217560-217463 Vanrija humicola strain CBS 4282 CBS4282_scaffold10, whole genome shotgun sequence
VanHum/1-98                -TGCCTGATGAATATGGGACTCCCTCTTCGCATCCATGT-GTGTCGACAACCCCTTT-GGAATCGAACCTATCCTCGAAAGAGGA---CCTCCACTGTCTGATC--
#=GS TriVee/1-97 DE BCKJ01000004.1:827079-827175 Trichosporon veenhuisii DNA, scaffold: scaffold_3, strain: JCM 10691, whole genome shotgun sequence
TriVee/1-97                -TTTATGATGAATATGGGACTCCCTCTTCGCATCCATGC-GTGTCGACAACCCCCTT-GGAATCGAACCTATCCCTTC-GGGGAA---CCTCCGTTGTCTGATC--
#=GS ApiMyc/1-98 DE CP053621.1:c5462863-5462766 Apiotrichum mycotoxinovorans strain CICC 1454 chromosome 2
ApiMyc/1-98                CTTCCTGATGAATATGGGACTCCCTCTTCGCATCCATGC-GTGTCGACA-CCCCCTT-GGAATCGAACCTATCTCTTC-GGAGAA---CCTCCTATGTCTGAACC-
#=GS CryCur/1-98 DE BCJH01000028.1:229413-229510 Cryptococcus curvatus DNA, scaffold: scaffold_27, strain: JCM 1532, whole genome shotgun sequence
CryCur/1-98                -TTCTTGATGAATATGGGACTCCCTCTTCGCATCCAAGC-ATGTCGACAA-CCCCTT-GGAATCGAACCTTCC-TCGCAAGAGGA---TATCCTGTGTCTGATCAT
#=GS KwoSha/1-99 DE NQVO01000023.1:325808-325906 Kwoniella shandongensis strain CBS 12478 scaffold00023, whole genome shotgun sequence
KwoSha/1-99                CTCCCTGATGAATATAGGACTCCCTCTTCGCATTCATGT-GTGTCGACA--TTCCTT-GGAATCGAACCTACCCTCTTCGGAGGG-TTTATCCTTTGTCTGATC--
#=GS BulAlb/1-100 DE CAMYTR010000025.1:c21783-21680 Bullera alba genome assembly, contig: jcf7180000012118, whole genome shotgun sequence
BulAlb/1-100               --TCCTGATGAATATGGGACTCCCTCTTCGCATTCATGT-GTGTCGATGACCCCTTT-GGAATCGAACCTACCCTCGCAAGAGGG--CCTTTCCTTGTCTGACCTT
#=GS VanPse/1-98 DE CP086715.1:3826040-3826137 Vanrija pseudolonga isolate DUCC4014 chromosome 2
VanPse/1-98                -TGCCTGATGAATATGGGACTCCCTCTTCGCATTCATGT-GTGTCGACAACCCCTTT-GGAATCGAACCTATCCTCGCAAGAGGA---CCTCCACTGTCTGATC--
#=GS VinVic/1-100 DE JADPYG010000088.1:c4032186-4032087 Vishniacozyma victoriae isolate T18_1_22C Contig_88, whole genome shotgun sequence
VinVic/1-100               -TTCCTGATGATCATGGGACTCCCTCTTCGCATATTTTGCATGTCGACAA-TCCCTT-GGAATCGAACCTACCCTCTTCGGAGGGCAACATCC-TTGTCTGATC--
#=GS SaiPod/1-102 DE RSCD01000013.1:135374-135476 Saitozyma podzolica strain DSM 27192 scaffold_13, whole genome shotgun sequence
SaiPod/1-102               -CTTCTGATGATCATGGGACTCCCTCTACGCATTCACCC-GTGTCGACAT-CCCCTT-GGAATCGAACCTACCCTCGCAAGAGGGCCACTTCCGTTGTCTGAACCC
#=GS KwoHev/1-97 DE ASQC01000028.1:c95195-95099 Kwoniella heveanensis CBS 569 cont2.28, whole genome shotgun sequence
KwoHev/1-97                --TCCTGATGAATATGGGACTCCCTCTTCGCATTATAAT-GTGTCGACAA-TCCCTA-GGAATCGAACCTACCCTCTTCGGAGGG--CCATCCGCTGTCTGATC--
#=GS KwoMan/1-99 DE ASQF01000049.1:107077-107175 Kwoniella mangroviensis CBS 8886 cont1.49, whole genome shotgun sequence
KwoMan/1-99                CACCCTGATGAATATGGGACTCCCTCTTCGCATTGTAAA-GTGTCGACAA-TCCCTA-GGAATCGAACCTACTCTCTTCGGAGGG--CAATCCGCTGTCTGATC--
#=GS KwoBes/1-99 DE ASCK01000007.1:759741-759839 Kwoniella bestiolae CBS 10118 cont1.7, whole genome shotgun sequence
KwoBes/1-99                CACCCTGATGAATATGGGACTCCCTCTTCGCATTGTAAA-GTGTCGACAA-TCCCTA-GGAATCGAACCTACTCTCTTCGGAGGG--CAATCCGCTGTCTGATC--
#=GS KwoPin/1-97 DE ASCL01000005.1:47478-47574 Kwoniella pini CBS 10737 cont1.5, whole genome shotgun sequence
KwoPin/1-97                --TCCTGATGAATATGGGACTCCCTCTTCGCATTGTAAA-GTGTCGACAA-TCCCTA-GGAATCGAACCTACTCTCTTCGGAGGG--CAATCCATTGTCTGATC--
#=GS TreMes/1-97 DE XM_007000815.1:572-668 Tremella mesenterica DSM 1558 uncharacterized protein (TREMEDRAFT_37184), mRNA
TreMes/1-97                -TCAATGATGATCATGGGACTCCCTCTACGCAAAATAC--ATGTCGATAT-CCCCTT-GGAATCGAACCTACCCTCTTT-GAGGG--CCATCCGTTGTCTGAACC-
AraTha-SnoR30/1-88         -ACGATGAGGATGTAC-AGCTCCCTCTTCTGATTAAG---CTGAAGAGAATTGCTGGCAGAATCGAACCTAAA------------TCACTAGCCACTACTGAGTT-
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