U3b¶
Processed from a transcript (as CNAG_13174)
U3b_boxCDsnoRNA-251nt.
Sequence is nearly identical to that of the other U3-like snoRNA, snR45-U13/U3 on chromosome 3.
The homologue from Naematelia encephala (URS0000D98D81_71784 ) is assigned by Rfam as the small nucleolar RNA U3 (Rfam RF00012).
No sign of the U3-like sequence being interrupted with an intron as is the case in baker’s yeast.
Orthologue of yeast U3a or U3b, snR17a or snR17b, human SNORD3@.
In Tremellomycetes the conserved 5’ stemloop comprising
boxes A'/Ais much shorter.U3 sequences in the 5’ 70 nt leader have predicted targets in 18S rRNA: tgatcctg[cc]agtagtc, like in S. cerevisiae (18S target 1a, and target 1b) where they are part of a pseudo-knot (for an overview see [Marmier-Gourrier-2011]). In baker’s yeast another 18S rRNA target, aggaa, and interaction sites in the ETS1, ggatttggtgg and Tcaaagagtg, have been described; these interactions do not seem conserved in Tremellomycetes, although ETS1 sequences that could support comparable basepairing with U3 in Cryptococcus can be found: gtggaaggtg and gtgaggaaga. In Tremellomycetes the
box AU3-element that would interact with 18S rRNA sequence aggaa seems absent resulting in a much shorter 5’ stemloop comprising onlybox A'(whereas in baker’s yeastbox Aforms also part of this structural element). All these U3 interaction sites differ from regions around the acetylated C near the 3’ end of 18S rRNA, found by snR45.In baker’s yeast, apart from U3, snoRNAs snR4 and snR45 contain a leader sequence with base-pairing functionality [Sharma-2017].
Functions of U3 and snR45 in yeast might be mixed in Tremellomycetes (see snR45-U13/U3).
Alignments:
U3 homologs in Tremellomycetes, identical to snR45-U13/U3-homologs¶
Putative secondary structures (drawn with R2R); model for Rfam RF00012 is in the inset on the left:
Tremellomycetes U3 Close homologs of S. cerevisiae U3
Helix-formation by association of C/D and C’/D’ motifs has not been incorporated in these models (in contrast to the models for snR45/U3 and U13).
>AE017348.1:892818-893068 Cryptococcus neoformans var. neoformans JEC21 chromosome 8 sequence ATCGACCTTACTCTGCAGGATCTCTGTATAGTAATCGTTCTTTTTTGCTAGTCCACACTAGCCACATTTT CCACGTCGAGGGGATGATCTAGTTACCCGCTCCGCTCTCTCACAGAGGCATTTAGCCATCGGTCCTCTCT TTCGAGTGAGGTTCCGAGAGGTTATCGAAGAAGCTGGCGGTCGCATACCTGCCAACCCTCCGGGGAAGGT ATGGGAGCGACCGTGGGCTGGAGCGGGCTTTCTGATCGACG
Image source U3:
# STOCKHO#=GS SNORD3@/1-216 DE Homo_sapiens SNORD3@ http://snoopy.med.miyazaki-u.ac.jp/snorna_db.cgi?mode=sno_info&id=Homo_sapiens300250LM 1.0
#=GF RW van Nues, May 2023, Aug 2024
#=GF https://coalispr.codeberg.page/paper
#=GS SNORD3@/1-216 DE Homo_sapiens SNORD3@ http://snoopy.med.miyazaki-u.ac.jp/snorna_db.cgi?mode=sno_info&id=Homo_sapiens300250
SNORD3@/1-216 ---------AAGACTATACTTTCAGGGATCATTTCTATAGTGTGTT-------------ACTAGAGAAGTTTCTCTGAACG----------TGTAGAGCACCGAAAA------CCCCGAGGAAGAGAGGTAGCGTTTTCTCCTGAGCGTGAAGCCGGCTTTCTGGCGTTGCTTGGCTGCAACTGCCGTCAGCCAT-------------------------------------------------------------------TGATGATCGTTCTTCTCTCCGTATT---------------------GGGGAGTGAGAGGGAGAGAAC-GCGGTCTGAGTGG------------------------------------------
#=GS snR17a/1-333 DE Saccharomyces_cerevisiae U3a http://snoopy.med.miyazaki-u.ac.jp/snorna_db.cgi?mode=sno_info&id=Saccharomyces_cerevisiae300074
snR17a/1-333 --------GTCGACG-TACTTCATAGGATCATTTCTATAGGAATCGT-CACTCTTTGACTCTTCAAAAGAGCCACTGAATCCAACTTGGT-TGATGAGTCCCATAACCTTTGTACCCCAGAGTGAGAAACCGAAATTGAATCTAAATTAGCTTGGTCCGCAATCCTTAGCGGTTCGGCCATCTATAATTTTGAATAAAAATTTTGCTTTGGCGTTGCATTTGTAGTTTTTTCCTTTGGAAGTAATTACAATATTTTATGGCGCGATGATCTTGACCCATCCTATGTACTTCTTTTTTGAAGGGATAGGGCTCTATGGGTGGGTACAAATGGCAGTCTGACAAGT-----------------------------------------
#=GS snR17b/1-332 DE Saccharomyces_cerevisiae U3b http://snoopy.med.miyazaki-u.ac.jp/snorna_db.cgi?mode=sno_info&id=Saccharomyces_cerevisiae300049
snR17b/1-332 --------GTCGACG-TACTTCATAGGATCATTTCTATAGGAATCGT-CACTCTTTGACTCTTCAAAAGAGCCACTGAATCCAACTTGGT-TGATGAGCCCCATAACCTTTGTACCCCAGAGTGAGGAAATGAAATCGAATTTAAATTAGCTTGGTCCGCAATCCTTAGCGGTTCGGCCATCTATAATTTTGAATAAAA-TTTTGCTTTGCCGTTGCAATTGTGATAACTTCCTTTGGAATTTGTTGCGATATTTAATGGCGCGATGATCTTGACCCATCCTATGTGCTTCCATTTTGGAAGGATAGGGATTCATGGGTGGGTACAAATGGCAGTCTGACAAGT-----------------------------------------
SacCer_18S/1-44 -----------CUG--AUGA---GUCCUAG-AAGGA---------------------------------UUGGU----------------RTGATGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------CGATGA-----------------------------------------------------------------GTCTGA----------------------------------------------
SacCer_ETS1/20-59 ------------------------------------------------GUGAGAAACU-------------GGUGGUUUAGG--------RTGATGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------CGATGA-----------------------------------------------------------------GTCTGA----------------------------------------------
Annot_18S/1-36 -----------CUG--AUGA---GUCCUAG---------------------------------------UUGGU----------------RTGATGA-------------------------------------------------------------------------------------------------------------CGATGA----------------------------------------------------------------------------------------------------------------------CTGA---------------------------------------------------
Annot_ETS1_?/20-61 ------------------------------------------------AGAAGGAGUG----------------GUGGAAGGUG------RTGATGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------CGATGA-----------------------------------------------------------------GTCTGA----------------------------------------------
#=GS pre-U3-transcript/1-293 DE ncrna 8:892817:893129:1 (as Rfam URS0000D98D81_71784; Tremella encephala Small nucleolar RNA U3
pre-U3-transcript/1-293 --------ATCGACCTTACTCTGCAGGAT-CTCTGTATAGTAATCGT-TCTTTTTTGCTAGTCCACACTAGCCACATTTTCCACGTCGAGGGGATGATCTAGTTACCCGCTCC--GCTCTCTCACAGAGG---CATTTAG-CCA--TCGG-T--CCTC-T----CT-TTCG-AG----T-GAGG---TTCCGA--GAGG--TTA-TCGAAGAAGCTGGCGGT-------CGC-ATA--CCTG------CCAA-CCC-----TCCG---GGG-AA--GG---TA-TGGG--A-GCG-------ACCGT--GGGC--T-GGAGCG-GGCTTTCTGATCGACGTTCAATAGGTTTCTTTTT---ACCAGTATAGTTTGGTGAGCATGA
#=GS U3b/1-251 DE ncrna 8:892817:893129:1 (as Rfam URS0000D98D81_71784; Tremella encephala Small nucleolar RNA U3
U3b/1-251 --------ATCGACCTTACTCTGCAGGAT-CTCTGTATAGTAATCGT-TCTTTTTTGCTAGTCCACACTAGCCACATTTTCCACGTCGAGGGGATGATCTAGTTACCCGCTCC--GCTCTCTCACAGAGG---CATTTAG-CCA--TCGG-T--CCTCT-----CT-TTCG-AG----T-GAGG---TTCCGA--GAGG--TTA-TCGAAGAAGCTGGCGGT-------CGC-ATA--CCTG------CCAA-CCC-----TCCG---GGG-AA--GG---TA-TGGG--A-GCG-------ACCGT--GGGC--T-GGAGCG-GGCTTTCTGATCGACG---------------------------------------------
#=GS CNAG_13174/1-293 DE CP003833.2:c302983-302691 Cryptococcus neoformans var. grubii H99 chromosome 14, complete sequence
CNAG_13174/1-293 --------ATCGACCTTACTCTGCAGGAT-CTCTGTATAGTAATCGT-TCTTTTTTGCTAGTCCACACTAGCCACATTTTCCACGTCGAGGGGATGATCTAGTTACCCGCTCC--GCTCTCTTACAGAGG---CATTTAG-CCA--TCGG-T--CCTCT-----CT-TTCG-AG-----GGAGG---TTCCGA--GAGG--TTA-TCGAAGAAGCTGGCGGT-------CGCATAC---CTG------CCAA-CCC-----TCCG---GGG-AA--GG---TA-TGG---AAGCG-------ACCGT--GGGC--T-GGAGCG-GGCTTTCTGATCGACGTTCAATAGATTTCTTTTTT---CAACTGTAGTTTGGTGAGCATGA
#=GS R265_10/1-297 DE CP025768.1:c230733-230437 Cryptococcus gattii VGII R265 chromosome 10, complete sequence
R265_10/1-297 --------ATCGACCTTACTCTGCAGGAT-CTCTGTATAGTAATCGT-TCTTTTTTGCTAGTCCACACTAGCCACATTTTCCACGTCGAGGGGATGATTTAGTTACCCGCTCC--GCTCTTTTACAGAGG---CATTTAG-CCA--TCGG-T--CCTCT-----CTCTTTCGAG-----GGAGG---TTCCGG--GAGG--TTA-TCGAAGAAGCTGGCGGT-------TGC-ATA--CCTG------CCAA-CCT-----TCCG---GGG-AA--GG---TA-TGGG--A-GCA-------ATCGT--GGGC--T-GGAGCG-GGCTTTCTGATCGACGTCCATTCGGTTATTTTTTTTT-CCAGTGTAGATAGGTGAGCATGA
#=GS WM276_L/1-296 DE CP000297.1:c212431-212136 Cryptococcus gattii WM276 chromosome L, complete sequence
WM276_L/1-296 --------ATCGACCTTACTCTGCAGGAT-CTCTGTATAGTAATCGT-TCTTTTTTGCTAGTCCACACTAGCCACATTTTCCACGTCGAGGGGATGATTTAGTTACCCGCTCC--GCTCTTTCACAGAGA---CATTTAG-CCA--TCGG-T--CCTCT-----CT-TTCG-AG-----AGAGG---TTCCGG--GAGG--TTA-TCGAAGAAGCTGGCGGT-----C--GC-ATA--CCTG------CCAA-CCT-----TCCG---GGG-AA--GG---TA-TGGG--A-GC-A------ACCGT--GGGC--C-GGAGCG-GGCTTTCTGATTGACGTTCATACGATTCTTTTTTTTTTTCAGTGTAGATAGGTGAGCATGA
#=GS U3a_snR45-U13/1-259 DE AE017343.1:c1423686-1423428 Cryptococcus neoformans var. neoformans JEC21 chromosome 3 sequence
U3a_snR45-U13/1-259 --------ATCGACCTTACTCTGCAGGAT-CTCTGTATAGTAATCGT-TCTTTTTTGCTAGTCCACACTAGCCACATTTTCCACGTCGAGGGGATGATCTAGTCACCCGCTTC--GCTCTTTCACAGAGG---CATTTAG-CCG--TCGG-T--CCTCT-----CT-TTCG-AG-----AGAGG---TTCCGG--GAGG--TTA-TCGAAGAAGCTGGCGGTAT--GG---T---A---CCA---GTTTTGA-CCT-----CTTG---GGG-----AAAGCT--TGG---G-A--G----ATACCGT--GGGC--T-GGAGCG-GGCTTTCTGATCGACGTTCAAT---------------------------------------
#=GS CNAG_12256/1-256 DE CP003822.1:606650-606905 Cryptococcus neoformans var. grubii H99 chromosome 3, complete sequence
CNAG_12256/1-256 --------ATCGACCTTACTCTGCAGGAT-CTCTGTATAGTAATCGT-TCTTTTTTGCTAGTCCACACTAGCCACATTTTCCACGTCGAGGGGATGATCTAGTCACCCGCTTC--GCTCTTTCACAGAGG---CATTTAG-CCG--TCGG-T--CCTCT-----CT-TTCG-GG-----AGAGG---TTCCGG--GAGG--TTA-TCGAAGAAGCTGGCGGTAT--GG---T---A---CCA-----GCTGA-CCT-----TTCG---GGG-AA--GGC--T--TGG---G-A--G----ATGCCGT--GGGC--T-GGAGCG-GGCTTTCTGATCGACGTTCAA----------------------------------------
#=GS R265_1/1-276 DE CP025759.1:c1617770-1617495 Cryptococcus gattii VGII R265 chromosome 1, complete sequence
R265_1/1-276 --------ATCGACCTTACTCTGCAGGAT-CTCTGTATAGTAATCGT-TCTTTTTTGCTAGTCCACACTAGCCACATTTTCCACGTCGAGGGGATGATCTAGTCACCCGCTTC--GCTCTTTCACAGAGG---CATTTAG-CCG--TCGG-T--CCTCT-----CT-TTCG-GG-----GGAGG---TTCCGG--GAGG--TTA-TCGAAGAAGCTGGCGGTAT--GG---T---A--CCAA------CTGG-CCC-----TTTG---GGG-AA--AG---C--TTGG--G-A--G----ATACCGT--GGGC--A-GGAGCG-GGCTTTCTGATCGACGTTCCAACAAATTTCGATTTTCACCA--------------------
#=GS WM276_C/1-276 DE CP000288.1:c1379275-1379000 Cryptococcus gattii WM276 chromosome C, complete sequence
WM276_C/1-276 --------ATCGACCTTACTCTGCAGGAT-CTCTGTATAGTAATCGT-TCTTTTTTGCTAGTCCACACTAGCCACATTTTCCACGTCGAGGGGATGATCTAGTCACCCGCTTC--GCTCTTTCACAGAGG---CATTTAG-CCG--TCGG-T--CCTCT-----CT-TTCG-GG-----GGAGG---TTCCGG--GAGG--TTA-TCGAAGAAGCTGGCGGTAT--GG---T---A--CCAA------CTGG-CCC-----TTTG---GGG-AA--AG---C--TTGG--G-A--G----ATACCGT--GGGC--A-GGAGCG-GGCTTTCTGATCGACGTTCCAACAAATTTCGATTTTCACCA--------------------
#=GS CryFlo/1-259 DE RRZH01000002.1:c2035947-2035689 Cryptococcus floricola strain DSM 27421 chromosome 2, whole genome shotgun sequence
CryFlo/1-259 --------ATCGACCTTACTCTGCAGGAT-CTCTGTATAGTAATTGT-TCTTTTTCGCTAGTCCACACTAGCCACATTTTCCACGTCGAGGGGATGATCAAGTTACCCGCCCC--GCTCTTTCACAGAGG---CATTTAG-CCACCGACA-C---TTCC----GGC-TTCG-GTC---A-GTAG---C-TGTTGGGAGG--TTA-TCGAAGACGCTGGCGGT-----A-CGT-ATA----CC----GACTGA-TCC-----TTC----GGG-AAA-GGTC-T--GG----GAACG-------GCCGT--GGGC--T-GGGGCG-GGCTTTCTGATCGACGTTC------------------------------------------
#=GS CryAmy/1-259 DE MEKH01000001.1:c1912536-1912278 Cryptococcus amylolentus CBS 6273 supercont2.1, whole genome shotgun sequence
CryAmy/1-259 --------ATCGACCTTACTCTGCAGGAT-CTCTGTATAGTAATTGT-TCTTTTTCGCTAGTCCACACTAGCCACATTTTCCACGTCGAGGGGATGATCAAGTTACCCGCCCC--GCTCTTTCACAGAGG---CATTTAG-CCACCGACA-C---TTCC----GGC-TTCG-GTC---A-GTAG---C-TGTTGGGAGG--TTA-TCGAAGACGCTGGCGGT-----A-CGT-ATA----CC----GACTGA-TCC-----TTC----GGG-AAA-GGTC-T--GG----GAACG-------GCCGT--GGGC--T-GGGGCG-GGCTTTCTGATCGACGTTC------------------------------------------
#=GS CryWin/1-259 DE CP034262.1:307141-307399 Cryptococcus wingfieldii strain CBS7118 chromosome 2, complete sequence
CryWin/1-259 --------ATCGACCTTACTCTGCAGGAT-CTCTGTATAGTAATTGT-TCTTTTTCGCTAGTCCACACTAGCCACATTTTCCACGTCGAGGGGATGATCAAGTTACCCGCCCC--GCTCTTTCACAGAGG---CATTTAG-CCACCGACA-C---TTCC----GGC-TTCG-GTC---A-GTAG---C-TGTTGGGAGG--TTA-TCGAAGACGCTGGCGGT-----A-CGT-ATA----CC----GACTGA-TCC-----TTC----GGG-AAA-GGTC-T--GG----GAACG-------GCCGT--GGGC--T-GGGGCG-GGCTTTCTGATCGACGTTC------------------------------------------
#=GS KwoShan/1-263 DE NQVO01000013.1:c300888-300626 Kwoniella shandongensis strain CBS 12478 scaffold00013, whole genome shotgun sequence
KwoShan/1-263 -----TGGATTCTCCCACTCTCACAGGATT-TCTGTATAGTCACTGT-TCTTCTTTGCTAGTCTACACTAGCCACATTTTCCACGTCGAGGTGATGATCCAGTCACCCGCCCC--GCTCTCTCACAGAGG---CATTTAG-CCGTCAGTC-----AAAG--TCTCT-CTCG-GGAGG-T-CTTT-----GATTGGGAGG--TTA-TCGAAGAAGCTGGCGGT-----A-CGC-GGA--CCCG------TCGA-CCT-----TTCG---AGG-AA--GA------TGGG--GGGCG-------GCCGT--GGGC--T-GGGGCA-GGCTTTCTGATCGACGTTC------------------------------------------
#=GS KwoHev/1-262 DE ASQC01000169.1:c7406-7145 Kwoniella heveanensis CBS 569 cont2.169, whole genome shotgun sequence
KwoHev/1-262 ------TTTTTTTTCCGCTTCTGCAGGATT-TCTGTATAGTCACTGTCTCTTCTTTGCTAGTCCAAACTAGCCACATTTATCACGTCGAGGTGATGATAAAGT-ACCCGCTCC--GCTCTTTCACAGAGG--AAAT-TAG-CCG--TTGC-C---CATT---CCTT-TTAC-GGGG----AATG---A-GCAA--GAGG-TCTA-TCGAAGAAGCTGGCGGTCT---C--GC-GGA--CTCT---GTCCT--TCCA-----CTTG---TGGA----AGGATG--AGGG----GC------GGATCGT--GGGC--T-GGGGCGAGGCTTTCTGATCGACGT--------------------------------------------
#=GS KwoMan/1-267 DE ASQE01000061.1:c360750-360484 Kwoniella mangroviensis CBS 8507 cont2.60, whole genome shotgun sequence
KwoMan/1-267 ------TATCTGTTTGGCATATACAGGATT-TCTGTATAGTTACTGTCTCTTTTTTGCTAGTCCATACTAGCCACATTTTCCACGTCGAGGTGATGATAAAGTTACCCATCCT--ACTCTTTCACAGAGA---CATTTAG-CCG--CTTC-C-----CTT-TCTCT-TTCG-GGAGA-TTAG-------GAAG--GAGG--TTA-TCGAAGAAGCTGGCGATTC---A-CGT-GGA---CTC--ATCTTT--ATCC-----CTCGT--GGATTTA-GAAGA---GGG-----ACG-----GAATTGT--GGGT--T-TGGATGTGGCTTTCTGATCGACGCT-------------------------------------------
#=GS KwoBes/1-270 DE ASCK01000010.1:c186123-185854 Kwoniella bestiolae CBS 10118 cont1.10, whole genome shotgun sequence
KwoBes/1-270 ---TTCGATTTCTTCGATTTTTACAGGATT-TCTGTATAGTCACTGTCTCTTTTTTGCTAGTCCATACTAGCCACATTTTCCACGTCGAGGTGATGATAAAGTTACCCATCCT--ACTCTTTCACAGAGA---CATTTAG-CCG--TTTC------CTG-TCTTCT-CCCTCGGGGGAT-CGG------GAAG--GAGG--TTA-TCGAAGAAGCTGGCGA----TTCTCGT-GGA---CTCATC-TCTT---TCC-----TTTT---GGA-TC--GAGA-AGAGGG-----ACGGTC-----TCGT--GGGT--T-TGGATGTGGCTTTCTGATCGACGC--------------------------------------------
#=GS KwoDej/1-265 DE ASCJ01000004.1:1656736-1657000 Kwoniella dejecticola CBS 10117 cont1.4, whole genome shotgun sequence
KwoDej/1-265 ----CCGACTTTTTGGGAACTTGCAGGATT-TCTGTATAGTCACTGTCTCTTTTTTGCTAGTCCATACTAGCCACATTTTCCACGTCGAGGTGATGATAAAGTTACCCATCCT--ACTCTTTCACAGAGA---CATTTAG-CCC---TCT-----GACC---CGGC-CTCG-GCTG----GGTT---TTGGG----AGG--TTA-TCGAAGAAGCTGGCGATTTC--A-CGT-GGA---CTC--ATCTTT---TTC-----GTAA---GAA-TCA-GAAGA---GGG-----ACG----GAAATTGT--GGGT--C-TGGATGAGGCTTTCTGATCGACGCT-------------------------------------------
#=GS KocImp/1-234 DE NBSH01000010.1:c93020-92787 Kockovaella imperatae strain NRRL Y-17943 BD324scaffold_10, whole genome shotgun sequence
KocImp/1-234 ------ACCGCTGACTCGTCTCTCAGGATT-TCTGTATAGTTAGTAT-TTATCTTTGCTAGTCTACACTAGCCACATTTTCCACATCGAGGGGATGATCCAGT-ACCCGCTC--CGCTCT-TCACAGAGA---CATCTTGA-CG---------------T----GC-TCCTCGC-----------------------CGT-CAA-TCGAAGAAGCTGGCAGGGA-----TCGTCAA---TCG--A--CTCTT---C------ACGG--G---TT--GAG-----CGA-----CGG-T---TTCCTGT--GGGCG-AT-GAGCG-GGCTTTCTGATCGATGTA-------------------------------------------
#=GS SaiPod/1-245 DE RSCD01000015.1:c529662-529418 Saitozyma podzolica strain DSM 27192 scaffold_15, whole genome shotgun sequence
SaiPod/1-245 ----CGTCCGCTGACATGCATCGTAGGATT-TCTGTATAGTAAACGTC-CTTTTTCGCTAGTCTACACTAGCCACATTTTCCACGTCGAGTTGATGATCCAGT-CCCCGCCCG--GCTCTTTCACAGAGG---CATTTGG--CGA-----------CCC---GTCT-CTCG-GGAC----GGG-------------ACG--CCA-TCGAGGAAGCTGGCGG------TGTCG---T---GCCGAG--CTCGA--CC------TTTG--GG--AA--GAG--CGAGGT-----CGAC-------CCGC--GGGC--T-CGGGCG-GGCTCTCTGATCGACGTTC------------------------------------------
#=GS NaeEnc/1-243 DE MCFC01000048.1:c73912-73670 Naematelia encephala strain 68-887.2 BCR39scaffold_48, whole genome shotgun sequence
NaeEnc/1-243 -----CTTAGTGATTATGCTTCGCAGGATT-TCTGTATAGTATATATCTCACTTTTGCTAGTCTACACTAGCCACACTATCCACGTCGAGGTGATGATCGAGT-CCCCGCC--CCGCTCTTTCACAGAGA---CTTTTGG---T-------C---GTTCC---TCC-TTGTTGGG-----GAAC-----------AA----CCA-TCGAAGAAGCTGGCGG-----TT-GTT---G---ATTGGA---TC-TCTCT------TCGG--GGAGT---GA---A--GGT---C-AAC--------CCGT--GGGCGGC---GGCG-GGCTTTCTGATCGACGTCT------------------------------------------
#=GS TreEnc/1-235 DE Tremella encephala Small nucleolar RNA U3 URS0000D98D81_71784
TreEnc/1-235 ---------GTGATTATGCTTCGCAGGATT-TCTGTATAGTATATATCTCACTTTTGCTAGTCTACACTAGCCACACTATCCACGTCGAGGTGATGATCGAGT-CCCCGCC--CCGCTCTTTCACAGAGA---CTTTTGG---T-------C---GTTCC---TCC-TTGTTGGG-----GAAC-----------AA----CCA-TCGAAGAAGCTGGCGG-----TT-GTT---G---ATTGGA---TC-TCTCT------TCGG--GGAGT---GA---A--GGT---C-AAC--------CCGT--GGGCGGC---GGCG-GGCTTTCTGATCGAC----------------------------------------------
#=GS TreTag/1-266 DE CAJHEQ010000573.1:c9775-9510 MAG: Tremellales sp. Tagirdzhanova-0007 genome assembly, contig: TREM_573, whole genome shotgun sequence
TreTag/1-266 --------ATCGACGATACTTCGCAGGATT-TCTGTATAGTCATTGTCCGATTCTCGCTAGTCTACACTAGCCACATTTTCCACGTCGAGTTGATGATCTAGTCCTCCGCCC--CGCTCTTTCACAGAGA--ACTTTTCGTCCT-GGGTGCC-ATTCTTT-TCCTC-GTCAAGAGGG-C-GAGAGT-T-TATCC-C-GGA-CGA-TCGAAGAAGCCGGCGACC-------------------TGA-TCTG-GTTCT-----TCGAG--AGAAGCACCGGG-GA-------------T----GGTCGT--GGGCG-T--GGGCG-GACTTTCTGATCGACGCCC------------------------------------------
#=GS PapLau/1-241 DE JAAZPX010000082.1:35539-35779 Papiliotrema laurentii strain IF7SW-F4 scaffold595_cov210, whole genome shotgun sequence
PapLau/1-241 -------ACTTGACCATATTCTGCAGGAT-CTCTGTATAGTTATCGTCTCGTTTTTGCTAGTCTACACTAGCCACATTTTCCACGTCGAGGGGATGATCTAGTT-CCCGCCC--CGCTCTTTTACAGAGG--ACTT-TGG-CG------------------TTTTC-TTCG-GAAGA--------------------CG-ACCA-TCGAAGAAGCTGGCGG------CTGTT------TGTC-GA--GCT--GCTC----CTTTGC--GGGC----GGT--AA-GACG----AACA-------CCGT--GGGCG-C--GGGCG-GGCTTTCTGATCGACGTCGAC----------------------------------------
#=GS PapTer/1-236 DE JAHXHD010000715.1:c3080-2845 Papiliotrema terrestris strain LS28 scaffold-714, whole genome shotgun sequence
PapTer/1-236 -------AACATGGCTGACTCTGCAGGATT-TCTGTATAGTTAATGTCTCGTTTTTGCTAGTCTACACTAGCCACATTTTCCACGTCGAGGGGATGATTTAGT-ACCCGCTC--CGCTCTTTCACAGAGA---CCTTTGG--C-------------CTC----GCC-CTCG-GGC-----GGG----T---------G--ACCA-TCGAAGAAGCTGGCGACA--GGA--GC---C------GAT-------CTAC--CC-CTTGTGGGTGG---------TG-------AAGC--CGA--TGTCGC--GGGCG-A--GAGCG-GGCTTTCTGATCGACGT--------------------------------------------
#=GS CryFla/95-337 DE CAUG01000664.1:c55524-55188 Cryptococcus flavescens NRRL Y-50378 WGS project CAUG00000000 data, contig NODE_2187_length_71177_cov_45_840343, whole genome shotgun sequence
CryFla/95-337 CTGTGTGAATTTGGCTGACCCCGCAGGATT-TCTGTATAGTAAATGTCTCGTTTTTGCTAGTCTACACTAGCCACATTTTCCACGTCGAGGGGATGATTTAGT-ACCCGCTC--CGCTCTTTCACAGAGA---CATTTGG--C-------------CTC----GCC-CTCG-GGC-----GGG----A---------G--ACCA-TCGAAGAAGCTGGCGACA--GGA--GC---C------GAT-------CTAC--CC-CTTGTGGGTGG---------TG-------ACGC--CGA--TGTCGC--GGGCG-A--GAGCG-GGCTTTCTGATCGACGT--------------------------------------------
#=GS TreMes/1-257 DE SDIL01000112.1:c62148-61892 Tremella mesenterica strain ATCC 28783 supercont1.112, whole genome shotgun sequence
TreMes/1-257 ------AACTATCGCTGACCTTTCAGGATT-TCTGTATAGTTATCGTCTCGTCTTTGCTAGTCCACACTAGCGACAAATTCCACGTCGAGGTGATGATC--ACCCCCCGCTC--CGCTCTCTCACAGAGG---CCTTTGG-AC--CCGTG-T--TTTGT-CATTTC-TTTT-GAGGTGA-ACGAA----TGTGG---GT--CTA-TCGAAGAAGCTGGCGAC---GAA-TCT---G----AC-------C--TTTT-----CGAA---AGAA----G----A--GT----GAGGA-CGA---GTCGC--GGGCG-A--GGGCG-GGATTTCTGATCGACGCGA------------------------------------------
#=GS BulAlb/1-243 DE CAMYTR010000032.1:c72771-72529 Bullera alba genome assembly, contig: jcf7180000012125, whole genome shotgun sequence
BulAlb/1-243 -----GTTTACTGACTCTTCTCTAGGGATT-TCTGTATAGTTAATGTCTCGTCTTTGCTAGTCTACACTAGCCACATTTTCCACGTCGAGGTGATGATCTAGT-CCCCACCC--CGCTCTTTCACAGAGA---CTTTTGG--T----------------TCGTTGC-TTCG-GCGACGC--------T---------A---CCA-TCGAAGAAGCTGGCGG------CGGTA----CGAGTCGAA--TCG----GC-----CTTGT--GT------TGA--CAAGACTTG--TACC-------CCGT--GGGCG-TT-GGGTG-GGCTTTCTGATCGACGT--------------------------------------------
#=GS TriOvo/1-244 DE WEIQ01000003.1:540050-540293 Trichosporon ovoides strain 2NF903A scaffold3-size1597232, whole genome shotgun sequence
TriOvo/1-244 --GCGCGCGTTGCTAACTTTCTCCAGGATTCTCTGTATAGTCACTGTCT-TTTCTCGCTAGTTCACACTAGCCACATTTTCCACGTCGAGGAGATGATCTAGT-CCCCTCCCG--GCTCTTTCACAGAGACCACTTTGCA---------------------ACACC-TCCG-GGTGT------------------C-----TGCTCCGAAGAAGCTGGCGGCGC---TGGCA---------G-AA---------CCTGAC-CCTCTGTGG--AAA-GG------C-----GATGCC----GCACCGT--GGGC--T-CGGGAG-GGCTTTCTGATCGACGTTC------------------------------------------
#=GS TriCor/1-245 DE JXYL01000018.1:c707888-707644 Trichosporon coremiiforme strain JCM 2938 scaffold_0018, whole genome shotgun sequence
TriCor/1-245 -----GCTCTTGCTAACTTTCTCCAGGATTCTCTGTATAGTCACTGTCT-TTTCTCGCTAGTTCACACTAGCCACATTTTCCACGTCGAGGAGATGATCTAGT-CCCCTCCCG--GCTCTTTCACAGAGACCACTTTGCG---------------------ACACT-CTTGCAGTGT------------------A-----CGCTCCGAAGAAGCTGGCGGCGC---TGGCA---------G-AA---------CCTGAC-CCTCTGTGG--AAA-GG------C-----GATGCC----GCACCGT--GGGC--A-CGGGAG-GGCTTTCTGATCGACGTTCTAT---------------------------------------
#=GS TriAsa/1-246 DE SCGW01000232.1:c18485-18240 MAG: Trichosporon asahii isolate N5_275_008G1 N5_275_008G1_scaffold_318, whole genome shotgun sequence
TriAsa/1-246 ----CGCGCTTGCTAACTTTCTCCAGGATTCTCTGTATAGTCACTGTCT-TTTCTCGCTAGTTCACACTAGCCACATTTTCCACGTCGAGGAGATGATCTAGT-CCCCTCCCG--GCTCTTTCACAGAGACCACTTTGCG---------------------GCGCT-CTCGCAGCGT------------------A-----CGCTCCGAAGAAGCTGGCGGCGC---TGGCA---------G-AA---------CCTGAC-CCTCTGTGG--AAA-GG------C-----GATGCC----GCGCCGT--GGGC--A-CGGGAG-GGCTTTCTGATCGACGTTCCAT---------------------------------------
#=GS TriInk/1-241 DE JXYM01000007.1:564290-564530 Trichosporon inkin strain JCM 9195 scaffold_0007, whole genome shotgun sequence
TriInk/1-241 -----GCAGCTGCTGACGTTCTCCAGGATTCTCTGTATAGTCACTGTCT-TTTCTCGCTAGTTCACACTAGCCACATTTTCCACGTCGAGGAGATGATCTAGT-CCCCTCCCG--GCTCTTTCACAGAGACCACTCTGCA---------------------ACACC-TCCG-GGTGT------------------C-----TGCTCCGAAGAAGCTGGCGGCGC---TGGCA---------G-AA---------CCTGAC-CCTCTGTGG--AAA-GG------C-----GATGCC----GCGCCGT--GGGC--A-CGGGAG-GGCTTTCTGATCGACGTAC------------------------------------------
#=GS VanFra/1-244 DE BEDY01000008.1:19565-19808 Vanrija fragicola DNA, scaffold: scaffold_8, strain: JCM 1530, whole genome shotgun sequence
VanFra/1-244 ----TTCACCGCTTACCCTTCTCCAGGAT-CTCTCTACAGTTTACGTCTCTTTCTCGCTAGTTCATACTAGCCACATTTTCCACGTCGAGGCGATGATACAGT-CCCCTCCCG--GCTCTCTTACAGAGG--CCCGA--G---------------CCCA--CTGCT-TTCG-AGCTT---TGGG-----------A-----C---GCGAAGAAGCTGGCGGCGC---T--GG---A-----CAAA--CCCGA-CCC-----CGCGT--GGG-AA--GGG--CGAG-----A-CC------GCACCGT--GGGC--A-CGGGAG-GGCTTTCTGATCGACGTTC------------------------------------------
#=GS VanHum/3-244 DE QKWK01000007.1:1135130-1135373 Vanrija humicola strain CBS 4282 CBS4282_scaffold07, whole genome shotgun sequence
VanHum/3-244 -TTCTTCATGTGTCTATACTCAGTAGGAT-CTCTCTACAGTATACGTCTCATTCTCGCTAGTTCATACTAGCCACATTTTCCACGTCGAGGCGATGATCTAGC-CCCCTCCCG--GCTCTCTTACAGAGG--ACCCCGAG----------------------CGTC-TTCG-GACG-------------------T-----CTCATCGAAGAAGCTGGCGGCG----A--GG---A-----C-GA-GCCCGA-CCC-----CCTGT--GGG-AA--GGGC-GA-G-----G-CC--G----CGCCGT--GGGC--T-CGGGAG-GGCTTTCTGATCGACGTTCC-----------------------------------------
#=GS CryGC4/1-243 DE JALPCA010001027.1:617-859 Cryptococcus sp. GC_Crypt_4 iso00_46_1063, whole genome shotgun sequence
CryGC4/1-243 -----TCCACGCTGATAATTCTTAGGGAT-CTCTGTATAGTTAATGTCTCGACTTTGATAGGCTAAACTAGCCACATTTTCGACGTCGCGGTGATGATTTAGT-ACCCTCTT--CGCTCTTTCACAGAGA---CTTTTGG--C------------------CATCT-TTAG-GGATG----------T---------G--ACCA-TCGAAGAAGCTGGCGAT-----C-AAT------CGTC-AA--TCG-A-CCC-----TTTAT--GGG-CTG-TGA-----GATG----ATT-------GTCGT--GGGCG--T-AAGAG-GGCTTTCTGATCGACGTCCAAAT--------------------------------------
#=GS CrySki/1-265 DE BCHT01000022.1:143295-143559 Cryptococcus skinneri DNA, scaffold: scaffold_21, strain: JCM 9039, whole genome shotgun sequence
CrySki/1-265 ----GACACGCCTTGCTCTCTCTCAGGATT-TCTGTATAGTTAATGT-TCATTTTCACTAGTTTACACTAGTCACATTTTCCACGTCGAGGGGATGATATAGT-CACCCCCCT--ACTCTTTCACAGAGA---CTTTTGG----GTTCTT--ATCGCCC--CCTTCTCTTCTGGGGG-T-GGGTGGT--AAGAAC------CCA-TCGAAGAAGCTGGCGA------T-CCG------ATTG-AA---TT--TTCGAGCT-CTCG-AGCGAG----GG---AA-CGAT--ATCGG--------TCGT--GGGT--C-TGGGGG-GTCTTTCTGATCGACGT--------------------------------------------
#=GC SS_cons -----------------------((((----))))---------------------((((((----))))))-----------<<<<<<----------------[[[[[[[[[[[[[[------------------((((((-((((((--(((((((-((((((------))))))--)))))))--))))))--)))-)))-------------((((((((---((((----((((((---(((((--((((--((------))))))----)))))---))))))--))))---))))))))--]]]]]]--]]]]]]-]]-------->>>>>>---------------------------------------------
//
R2R-script ‘makefig’ run as
bash$ sh makefig:
#!/bin/bash
IN=../u3-r2r-in.sto
MID=u3_R2R.cons.sto
OUT=../U3-tremellomycetes_R2R.svg
# calculate consensus
r2r --GSC-weighted-consensus $IN $MID 3 0.97 0.9 0.75 4 0.97 0.9 0.75 0.5 0.1
# create the svg figure
r2r $MID $OUT
R2R input ‘u3-r2r-in.sto’:
# STOCKHOLM 1.0
#=GF R2R keep allpairs
#=GS U3b/1-251 DE ncrna 8:892817:893129:1 (as Rfam URS0000D98D81_71784; Tremella encephala Small nucleolar RNA U3
U3b/1-251 ATCGACCTTACTCTGCAGGAT-CTCTGTATAGTAATCGT-TCTTTTTTGCTAGTCCACACTAGCCACATTTTCCACGTCGAGGGGATGATCTAGTTACCCGCTCC--GCTCTCTCACAGAGG---CATTTAG-CCA--TCGG-T--CCTC-T----CT-TTCG-AG----T-GAGG---TTCCGA--GAGG--TTA-TCGAAGAAGCTGGCGGT-------CGC-ATA--CCTG------CCAA-CCC-----TCCG---GGG-AA--GG---TA-TGGG--A-GCG-------ACCGT--GGGC--T-GGAGCG-GGCTTTCTGATCGACG
#=GS CNAG_13174/1-251 DE CP003833.2:c302983-302691 Cryptococcus neoformans var. grubii H99 chromosome 14, complete sequence
CNAG_13174/1-251 ATCGACCTTACTCTGCAGGAT-CTCTGTATAGTAATCGT-TCTTTTTTGCTAGTCCACACTAGCCACATTTTCCACGTCGAGGGGATGATCTAGTTACCCGCTCC--GCTCTCTTACAGAGG---CATTTAG-CCA--TCGG-T--CCTCT-----CT-TTCG-AG-----GGAGG---TTCCGA--GAGG--TTA-TCGAAGAAGCTGGCGGT-------CGCATAC---CTG------CCAA-CCC-----TCCG---GGG-AA--GG---TA-TGG---AAGCG-------ACCGT--GGGC--T-GGAGCG-GGCTTTCTGATCGACG
#=GS R265_10/1-253 DE CP025768.1:c230733-230437 Cryptococcus gattii VGII R265 chromosome 10, complete sequence
R265_10/1-253 ATCGACCTTACTCTGCAGGAT-CTCTGTATAGTAATCGT-TCTTTTTTGCTAGTCCACACTAGCCACATTTTCCACGTCGAGGGGATGATTTAGTTACCCGCTCC--GCTCTTTTACAGAGG---CATTTAG-CCA--TCGG-T--CCTCT-----CTCTTTCGAG-----GGAGG---TTCCGG--GAGG--TTA-TCGAAGAAGCTGGCGGT-------TGC-ATA--CCTG------CCAA-CCT-----TCCG---GGG-AA--GG---TA-TGGG--A-GCA-------ATCGT--GGGC--T-GGAGCG-GGCTTTCTGATCGACG
#=GS WM276_L/1-251 DE CP000297.1:c212431-212136 Cryptococcus gattii WM276 chromosome L, complete sequence
WM276_L/1-251 ATCGACCTTACTCTGCAGGAT-CTCTGTATAGTAATCGT-TCTTTTTTGCTAGTCCACACTAGCCACATTTTCCACGTCGAGGGGATGATTTAGTTACCCGCTCC--GCTCTTTCACAGAGA---CATTTAG-CCA--TCGG-T--CCTCT-----CT-TTCG-AG-----AGAGG---TTCCGG--GAGG--TTA-TCGAAGAAGCTGGCGGT-----C--GC-ATA--CCTG------CCAA-CCT-----TCCG---GGG-AA--GG---TA-TGGG--A-GC-A------ACCGT--GGGC--C-GGAGCG-GGCTTTCTGATTGACG
#=GS U3a_snR45-U13/1-253 DE AE017343.1:c1423686-1423428 Cryptococcus neoformans var. neoformans JEC21 chromosome 3 sequence
U3a_snR45-U13/1-253 ATCGACCTTACTCTGCAGGAT-CTCTGTATAGTAATCGT-TCTTTTTTGCTAGTCCACACTAGCCACATTTTCCACGTCGAGGGGATGATCTAGTCACCCGCTTC--GCTCTTTCACAGAGG---CATTTAG-CCG--TCGG-T--CCTCT-----CT-TTCG-AG-----AGAGG---TTCCGG--GAGG--TTA-TCGAAGAAGCTGGCGGTAT--GG---T---A---CCA---GTTTTGA-CCT-----CTTG---GGG-----AAAGCT--TGG---G-A--G----ATACCGT--GGGC--T-GGAGCG-GGCTTTCTGATCGACG
#=GS CNAG_12256/1-251 DE CP003822.1:606650-606905 Cryptococcus neoformans var. grubii H99 chromosome 3, complete sequence
CNAG_12256/1-251 ATCGACCTTACTCTGCAGGAT-CTCTGTATAGTAATCGT-TCTTTTTTGCTAGTCCACACTAGCCACATTTTCCACGTCGAGGGGATGATCTAGTCACCCGCTTC--GCTCTTTCACAGAGG---CATTTAG-CCG--TCGG-T--CCTCT-----CT-TTCG-GG-----AGAGG---TTCCGG--GAGG--TTA-TCGAAGAAGCTGGCGGTAT--GG---T---A---CCA-----GCTGA-CCT-----TTCG---GGG-AA--GGC--T--TGG---G-A--G----ATGCCGT--GGGC--T-GGAGCG-GGCTTTCTGATCGACG
#=GS R265_1/1-251 DE CP025759.1:c1617770-1617495 Cryptococcus gattii VGII R265 chromosome 1, complete sequence
R265_1/1-251 ATCGACCTTACTCTGCAGGAT-CTCTGTATAGTAATCGT-TCTTTTTTGCTAGTCCACACTAGCCACATTTTCCACGTCGAGGGGATGATCTAGTCACCCGCTTC--GCTCTTTCACAGAGG---CATTTAG-CCG--TCGG-T--CCTCT-----CT-TTCG-GG-----GGAGG---TTCCGG--GAGG--TTA-TCGAAGAAGCTGGCGGTAT--GG---T---A--CCAA------CTGG-CCC-----TTTG---GGG-AA--AG---C--TTGG--G-A--G----ATACCGT--GGGC--A-GGAGCG-GGCTTTCTGATCGACG
#=GS WM276_C/1-251 DE CP000288.1:c1379275-1379000 Cryptococcus gattii WM276 chromosome C, complete sequence
WM276_C/1-251 ATCGACCTTACTCTGCAGGAT-CTCTGTATAGTAATCGT-TCTTTTTTGCTAGTCCACACTAGCCACATTTTCCACGTCGAGGGGATGATCTAGTCACCCGCTTC--GCTCTTTCACAGAGG---CATTTAG-CCG--TCGG-T--CCTCT-----CT-TTCG-GG-----GGAGG---TTCCGG--GAGG--TTA-TCGAAGAAGCTGGCGGTAT--GG---T---A--CCAA------CTGG-CCC-----TTTG---GGG-AA--AG---C--TTGG--G-A--G----ATACCGT--GGGC--A-GGAGCG-GGCTTTCTGATCGACG
#=GS CryFlo/1-256 DE RRZH01000002.1:c2035947-2035689 Cryptococcus floricola strain DSM 27421 chromosome 2, whole genome shotgun sequence
CryFlo/1-256 ATCGACCTTACTCTGCAGGAT-CTCTGTATAGTAATTGT-TCTTTTTCGCTAGTCCACACTAGCCACATTTTCCACGTCGAGGGGATGATCAAGTTACCCGCCCC--GCTCTTTCACAGAGG---CATTTAG-CCACCGACA-C---TTCC----GGC-TTCG-GTC---A-GTAG---C-TGTTGGGAGG--TTA-TCGAAGACGCTGGCGGT-----A-CGT-ATA----CC----GACTGA-TCC-----TTC----GGG-AAA-GGTC-T--GG----GAACG-------GCCGT--GGGC--T-GGGGCG-GGCTTTCTGATCGACG
#=GS CryAmy/1-256 DE MEKH01000001.1:c1912536-1912278 Cryptococcus amylolentus CBS 6273 supercont2.1, whole genome shotgun sequence
CryAmy/1-256 ATCGACCTTACTCTGCAGGAT-CTCTGTATAGTAATTGT-TCTTTTTCGCTAGTCCACACTAGCCACATTTTCCACGTCGAGGGGATGATCAAGTTACCCGCCCC--GCTCTTTCACAGAGG---CATTTAG-CCACCGACA-C---TTCC----GGC-TTCG-GTC---A-GTAG---C-TGTTGGGAGG--TTA-TCGAAGACGCTGGCGGT-----A-CGT-ATA----CC----GACTGA-TCC-----TTC----GGG-AAA-GGTC-T--GG----GAACG-------GCCGT--GGGC--T-GGGGCG-GGCTTTCTGATCGACG
#=GS CryWin/1-256 DE CP034262.1:307141-307399 Cryptococcus wingfieldii strain CBS7118 chromosome 2, complete sequence
CryWin/1-256 ATCGACCTTACTCTGCAGGAT-CTCTGTATAGTAATTGT-TCTTTTTCGCTAGTCCACACTAGCCACATTTTCCACGTCGAGGGGATGATCAAGTTACCCGCCCC--GCTCTTTCACAGAGG---CATTTAG-CCACCGACA-C---TTCC----GGC-TTCG-GTC---A-GTAG---C-TGTTGGGAGG--TTA-TCGAAGACGCTGGCGGT-----A-CGT-ATA----CC----GACTGA-TCC-----TTC----GGG-AAA-GGTC-T--GG----GAACG-------GCCGT--GGGC--T-GGGGCG-GGCTTTCTGATCGACG
#=GS KwoShan/4-260 DE NQVO01000013.1:c300888-300626 Kwoniella shandongensis strain CBS 12478 scaffold00013, whole genome shotgun sequence
KwoShan/4-260 ATTCTCCCACTCTCACAGGATT-TCTGTATAGTCACTGT-TCTTCTTTGCTAGTCTACACTAGCCACATTTTCCACGTCGAGGTGATGATCCAGTCACCCGCCCC--GCTCTCTCACAGAGG---CATTTAG-CCGTCAGTC-----AAAG--TCTCT-CTCG-GGAGG-T-CTTT-----GATTGGGAGG--TTA-TCGAAGAAGCTGGCGGT-----A-CGC-GGA--CCCG------TCGA-CCT-----TTCG---AGG-AA--GA------TGGG--GGGCG-------GCCGT--GGGC--T-GGGGCA-GGCTTTCTGATCGACG
#=GS KwoHev/3-261 DE ASQC01000169.1:c7406-7145 Kwoniella heveanensis CBS 569 cont2.169, whole genome shotgun sequence
KwoHev/3-261 TTTTTTCCGCTTCTGCAGGATT-TCTGTATAGTCACTGTCTCTTCTTTGCTAGTCCAAACTAGCCACATTTATCACGTCGAGGTGATGATAAAGT-ACCCGCTCC--GCTCTTTCACAGAGG--AAAT-TAG-CCG--TTGC-C---CATT---CCTT-TTAC-GGGG----AATG---A-GCAA--GAGG-TCTA-TCGAAGAAGCTGGCGGTCT---C--GC-GGA--CTCT---GTCCT--TCCA-----CTTG---TGGA----AGGATG--AGGG----GC------GGATCGT--GGGC--T-GGGGCGAGGCTTTCTGATCGACG
#=GS KwoMan/3-265 DE ASQE01000061.1:c360750-360484 Kwoniella mangroviensis CBS 8507 cont2.60, whole genome shotgun sequence
KwoMan/3-265 TCTGTTTGGCATATACAGGATT-TCTGTATAGTTACTGTCTCTTTTTTGCTAGTCCATACTAGCCACATTTTCCACGTCGAGGTGATGATAAAGTTACCCATCCT--ACTCTTTCACAGAGA---CATTTAG-CCG--CTTC-C-----CTT-TCTCT-TTCG-GGAGA-TTAG-------GAAG--GAGG--TTA-TCGAAGAAGCTGGCGATTC---A-CGT-GGA---CTC--ATCTTT--ATCC-----CTCGT--GGATTTA-GAAGA---GGG-----ACG-----GAATTGT--GGGT--T-TGGATGTGGCTTTCTGATCGACG
#=GS KwoBes/6-269 DE ASCK01000010.1:c186123-185854 Kwoniella bestiolae CBS 10118 cont1.10, whole genome shotgun sequence
KwoBes/6-269 TTTCTTCGATTTTTACAGGATT-TCTGTATAGTCACTGTCTCTTTTTTGCTAGTCCATACTAGCCACATTTTCCACGTCGAGGTGATGATAAAGTTACCCATCCT--ACTCTTTCACAGAGA---CATTTAG-CCG--TTTC------CTG-TCTTCT-CCCTCGGGGGAT-CGG------GAAG--GAGG--TTA-TCGAAGAAGCTGGCGA----TTCTCGT-GGA---CTCATC-TCTT---TCC-----TTTT---GGA-TC--GAGA-AGAGGG-----ACGGTC-----TCGT--GGGT--T-TGGATGTGGCTTTCTGATCGACG
#=GS KwoDej/5-263 DE ASCJ01000004.1:1656736-1657000 Kwoniella dejecticola CBS 10117 cont1.4, whole genome shotgun sequence
KwoDej/5-263 CTTTTTGGGAACTTGCAGGATT-TCTGTATAGTCACTGTCTCTTTTTTGCTAGTCCATACTAGCCACATTTTCCACGTCGAGGTGATGATAAAGTTACCCATCCT--ACTCTTTCACAGAGA---CATTTAG-CCC---TCT-----GACC---CGGC-CTCG-GCTG----GGTT---TTGGG----AGG--TTA-TCGAAGAAGCTGGCGATTTC--A-CGT-GGA---CTC--ATCTTT---TTC-----GTAA---GAA-TCA-GAAGA---GGG-----ACG----GAAATTGT--GGGT--C-TGGATGAGGCTTTCTGATCGACG
#=GS KocImp/3-232 DE NBSH01000010.1:c93020-92787 Kockovaella imperatae strain NRRL Y-17943 BD324scaffold_10, whole genome shotgun sequence
KocImp/3-232 CGCTGACTCGTCTCTCAGGATT-TCTGTATAGTTAGTAT-TTATCTTTGCTAGTCTACACTAGCCACATTTTCCACATCGAGGGGATGATCCAGT-ACCCGCTC--CGCTCT-TCACAGAGA---CATCTTGA-CG---------------T----GC-TCCTCGC-----------------------CGT-CAA-TCGAAGAAGCTGGCAGGGA-----TCGTCAA---TCG--A--CTCTT---C------ACGG--G---TT--GAG-----CGA-----CGG-T---TTCCTGT--GGGCG-AT-GAGCG-GGCTTTCTGATCGATG
#=GS SaiPod/5-242 DE RSCD01000015.1:c529662-529418 Saitozyma podzolica strain DSM 27192 scaffold_15, whole genome shotgun sequence
SaiPod/5-242 CGCTGACATGCATCGTAGGATT-TCTGTATAGTAAACGTC-CTTTTTCGCTAGTCTACACTAGCCACATTTTCCACGTCGAGTTGATGATCCAGT-CCCCGCCCG--GCTCTTTCACAGAGG---CATTTGG--CGA-----------CCC---GTCT-CTCG-GGAC----GGG-------------ACG--CCA-TCGAGGAAGCTGGCGG------TGTCG---T---GCCGAG--CTCGA--CC------TTTG--GG--AA--GAG--CGAGGT-----CGAC-------CCGC--GGGC--T-CGGGCG-GGCTCTCTGATCGACG
#=GS NaeEnc/4-240 DE MCFC01000048.1:c73912-73670 Naematelia encephala strain 68-887.2 BCR39scaffold_48, whole genome shotgun sequence
NaeEnc/4-240 AGTGATTATGCTTCGCAGGATT-TCTGTATAGTATATATCTCACTTTTGCTAGTCTACACTAGCCACACTATCCACGTCGAGGTGATGATCGAGT-CCCCGCC--CCGCTCTTTCACAGAGA---CTTTTGG---T-------C---GTTCC---TCC-TTGTTGGG-----GAAC-----------AA----CCA-TCGAAGAAGCTGGCGG-----TT-GTT---G---ATTGGA---TC-TCTCT------TCGG--GGAGT---GA---A--GGT---C-AAC--------CCGT--GGGCGGC---GGCG-GGCTTTCTGATCGACG
#=GS TreEnc/1-235 DE Tremella encephala Small nucleolar RNA U3 URS0000D98D81_71784
TreEnc/1-235 -GTGATTATGCTTCGCAGGATT-TCTGTATAGTATATATCTCACTTTTGCTAGTCTACACTAGCCACACTATCCACGTCGAGGTGATGATCGAGT-CCCCGCC--CCGCTCTTTCACAGAGA---CTTTTGG---T-------C---GTTCC---TCC-TTGTTGGG-----GAAC-----------AA----CCA-TCGAAGAAGCTGGCGG-----TT-GTT---G---ATTGGA---TC-TCTCT------TCGG--GGAGT---GA---A--GGT---C-AAC--------CCGT--GGGCGGC---GGCG-GGCTTTCTGATCGAC-
#=GS TreTag/1-263 DE CAJHEQ010000573.1:c9775-9510 MAG: Tremellales sp. Tagirdzhanova-0007 genome assembly, contig: TREM_573, whole genome shotgun sequence
TreTag/1-263 ATCGACGATACTTCGCAGGATT-TCTGTATAGTCATTGTCCGATTCTCGCTAGTCTACACTAGCCACATTTTCCACGTCGAGTTGATGATCTAGTCCTCCGCCC--CGCTCTTTCACAGAGA--ACTTTTCGTCCT-GGGTGCC-ATTCTTT-TCCTC-GTCAAGAGGG-C-GAGAGT-T-TATCC-C-GGA-CGA-TCGAAGAAGCCGGCGACC-------------------TGA-TCTG-GTTCT-----TCGAG--AGAAGCACCGGG-GA-------------T----GGTCGT--GGGCG-T--GGGCG-GACTTTCTGATCGACG
#=GS PapLau/2-236 DE JAAZPX010000082.1:35539-35779 Papiliotrema laurentii strain IF7SW-F4 scaffold595_cov210, whole genome shotgun sequence
PapLau/2-236 CTTGACCATATTCTGCAGGAT-CTCTGTATAGTTATCGTCTCGTTTTTGCTAGTCTACACTAGCCACATTTTCCACGTCGAGGGGATGATCTAGTT-CCCGCCC--CGCTCTTTTACAGAGG--ACTT-TGG-CG------------------TTTTC-TTCG-GAAGA--------------------CG-ACCA-TCGAAGAAGCTGGCGG------CTGTT------TGTC-GA--GCT--GCTC----CTTTGC--GGGC----GGT--AA-GACG----AACA-------CCGT--GGGCG-C--GGGCG-GGCTTTCTGATCGACG
#=GS PapTer/2-235 DE JAHXHD010000715.1:c3080-2845 Papiliotrema terrestris strain LS28 scaffold-714, whole genome shotgun sequence
PapTer/2-235 ACATGGCTGACTCTGCAGGATT-TCTGTATAGTTAATGTCTCGTTTTTGCTAGTCTACACTAGCCACATTTTCCACGTCGAGGGGATGATTTAGT-ACCCGCTC--CGCTCTTTCACAGAGA---CCTTTGG--C-------------CTC----GCC-CTCG-GGC-----GGG----T---------G--ACCA-TCGAAGAAGCTGGCGACA--GGA--GC---C------GAT-------CTAC--CC-CTTGTGGGTGG---------TG-------AAGC--CGA--TGTCGC--GGGCG-A--GAGCG-GGCTTTCTGATCGACG
#=GS CryFla/103-336 DE CAUG01000664.1:c55524-55188 Cryptococcus flavescens NRRL Y-50378 WGS project CAUG00000000 data, contig NODE_2187_length_71177_cov_45_840343, whole genome shotgun sequence
CryFla/103-336 ATTTGGCTGACCCCGCAGGATT-TCTGTATAGTAAATGTCTCGTTTTTGCTAGTCTACACTAGCCACATTTTCCACGTCGAGGGGATGATTTAGT-ACCCGCTC--CGCTCTTTCACAGAGA---CATTTGG--C-------------CTC----GCC-CTCG-GGC-----GGG----A---------G--ACCA-TCGAAGAAGCTGGCGACA--GGA--GC---C------GAT-------CTAC--CC-CTTGTGGGTGG---------TG-------ACGC--CGA--TGTCGC--GGGCG-A--GAGCG-GGCTTTCTGATCGACG
#=GS TreMes/3-254 DE SDIL01000112.1:c62148-61892 Tremella mesenterica strain ATCC 28783 supercont1.112, whole genome shotgun sequence
TreMes/3-254 CTATCGCTGACCTTTCAGGATT-TCTGTATAGTTATCGTCTCGTCTTTGCTAGTCCACACTAGCGACAAATTCCACGTCGAGGTGATGATC--ACCCCCCGCTC--CGCTCTCTCACAGAGG---CCTTTGG-AC--CCGTG-T--TTTGT-CATTTC-TTTT-GAGGTGA-ACGAA----TGTGG---GT--CTA-TCGAAGAAGCTGGCGAC---GAA-TCT---G----AC-------C--TTTT-----CGAA---AGAA----G----A--GT----GAGGA-CGA---GTCGC--GGGCG-A--GGGCG-GGATTTCTGATCGACG
#=GS BulAlb/4-242 DE CAMYTR010000032.1:c72771-72529 Bullera alba genome assembly, contig: jcf7180000012125, whole genome shotgun sequence
BulAlb/4-242 -TACTGACTCTTCTCTAGGGATTTCTGTATAGTTAATGTCTCGTCTTTGCTAGTCTACACTAGCCACATTTTCCACGTCGAGGTGATGATCTAGT-CCCCACCC--CGCTCTTTCACAGAGA---CTTTTGG--T----------------TCGTTGC-TTCG-GCGACGC--------T---------A---CCA-TCGAAGAAGCTGGCGG------CGGTA----CGAGTCGAA--TCG----GC-----CTTGT--GT------TGA--CAAGACTTG--TACC-------CCGT--GGGCG-TT-GGGTG-GGCTTTCTGATCGACG
#=GS CryGC4/4-236 DE JALPCA010001027.1:617-859 Cryptococcus sp. GC_Crypt_4 iso00_46_1063, whole genome shotgun sequence
CryGC4/4-236 -ACGCTGATAATTCTTAGGGATCTCTGTATAGTTAATGTCTCGACTTTGATAGGCTAAACTAGCCACATTTTCGACGTCGCGGTGATGATTTAGT-ACCCTCTT--CGCTCTTTCACAGAGA---CTTTTGG--C------------------CATCT-TTAG-GGATG----------T---------G--ACCA-TCGAAGAAGCTGGCGAT-----C-AAT------CGTC-AA--TCG-A-CCC-----TTTAT--GGG-CTG-TGA-----GATG----ATT-------GTCGT--GGGCG--T-AAGAG-GGCTTTCTGATCGACG
#=GS TriOvo/7-241 DE WEIQ01000003.1:540050-540293 Trichosporon ovoides strain 2NF903A scaffold3-size1597232, whole genome shotgun sequence
TriOvo/7-241 GTTGCTAACTTTCTCCAGGATTCTCTGTATAGTCACTGTCT-TTTCTCGCTAGTTCACACTAGCCACATTTTCCACGTCGAGGAGATGATCTAGT-CCCCTCCCG--GCTCTTTCACAGAGACCACTTTGCA---------------------ACACC-TCCG-GGTGT------------------C-----TGCTCCGAAGAAGCTGGCGGCGC---TGGCA---------G-AA---------CCTGAC-CCTCTGTGG--AAA-GG------C-----GATGCC----GCACCGT--GGGC--T-CGGGAG-GGCTTTCTGATCGACG
#=GS TriCor/4-239 DE JXYL01000018.1:c707888-707644 Trichosporon coremiiforme strain JCM 2938 scaffold_0018, whole genome shotgun sequence
TriCor/4-239 CTTGCTAACTTTCTCCAGGATTCTCTGTATAGTCACTGTCT-TTTCTCGCTAGTTCACACTAGCCACATTTTCCACGTCGAGGAGATGATCTAGT-CCCCTCCCG--GCTCTTTCACAGAGACCACTTTGCG---------------------ACACT-CTTGCAGTGT------------------A-----CGCTCCGAAGAAGCTGGCGGCGC---TGGCA---------G-AA---------CCTGAC-CCTCTGTGG--AAA-GG------C-----GATGCC----GCACCGT--GGGC--A-CGGGAG-GGCTTTCTGATCGACG
#=GS TriAsa/5-240 DE SCGW01000232.1:c18485-18240 MAG: Trichosporon asahii isolate N5_275_008G1 N5_275_008G1_scaffold_318, whole genome shotgun sequence
TriAsa/5-240 CTTGCTAACTTTCTCCAGGATTCTCTGTATAGTCACTGTCT-TTTCTCGCTAGTTCACACTAGCCACATTTTCCACGTCGAGGAGATGATCTAGT-CCCCTCCCG--GCTCTTTCACAGAGACCACTTTGCG---------------------GCGCT-CTCGCAGCGT------------------A-----CGCTCCGAAGAAGCTGGCGGCGC---TGGCA---------G-AA---------CCTGAC-CCTCTGTGG--AAA-GG------C-----GATGCC----GCGCCGT--GGGC--A-CGGGAG-GGCTTTCTGATCGACG
#=GS TriInk/4-238 DE JXYM01000007.1:564290-564530 Trichosporon inkin strain JCM 9195 scaffold_0007, whole genome shotgun sequence
TriInk/4-238 GCTGCTGACGTTCTCCAGGATTCTCTGTATAGTCACTGTCT-TTTCTCGCTAGTTCACACTAGCCACATTTTCCACGTCGAGGAGATGATCTAGT-CCCCTCCCG--GCTCTTTCACAGAGACCACTCTGCA---------------------ACACC-TCCG-GGTGT------------------C-----TGCTCCGAAGAAGCTGGCGGCGC---TGGCA---------G-AA---------CCTGAC-CCTCTGTGG--AAA-GG------C-----GATGCC----GCGCCGT--GGGC--A-CGGGAG-GGCTTTCTGATCGACG
#=GS CrySki/5-264 DE BCHT01000022.1:143295-143559 Cryptococcus skinneri DNA, scaffold: scaffold_21, strain: JCM 9039, whole genome shotgun sequence
CrySki/5-264 CGCCTTGCTCTCTCTCAGGATT-TCTGTATAGTTAATGT-TCATTTTCACTAGTTTACACTAGTCACATTTTCCACGTCGAGGGGATGATATAGT-CACCCCCCT--ACTCTTTCACAGAGA---CTTTTGG----GTTCTT--ATCGCCC--CCTTCTCTTCTGGGGG-T-GGGTGGT--AAGAAC------CCA-TCGAAGAAGCTGGCGA------T-CCG------ATTG-AA---TT--TTCGAGCT-CTCG-AGCGAG----GG---AA-CGAT--ATCGG--------TCGT--GGGT--C-TGGGGG-GTCTTTCTGATCGACG
#=GS VanFra/5-241 DE BEDY01000008.1:19565-19808 Vanrija fragicola DNA, scaffold: scaffold_8, strain: JCM 1530, whole genome shotgun sequence
VanFra/5-241 CCGCTTACCCTTCTCCAGGAT-CTCTCTACAGTTTACGTCTCTTTCTCGCTAGTTCATACTAGCCACATTTTCCACGTCGAGGCGATGATACAGT-CCCCTCCCG--GCTCTCTTACAGAGG--CCCGA--G---------------CCCA--CTGCT-TTCG-AGCTT---TGGG-----------A-----C---GCGAAGAAGCTGGCGGCGC---T--GG---A-----CAAA--CCCGA-CCC-----CGCGT--GGG-AA--GGG--CGAG-----A-CC------GCACCGT--GGGC--A-CGGGAG-GGCTTTCTGATCGACG
#=GS VanHum/10-240 DE QKWK01000007.1:1135130-1135373 Vanrija humicola strain CBS 4282 CBS4282_scaffold07, whole genome shotgun sequence
VanHum/10-240 TGTGTCTATACTCAGTAGGAT-CTCTCTACAGTATACGTCTCATTCTCGCTAGTTCATACTAGCCACATTTTCCACGTCGAGGCGATGATCTAGC-CCCCTCCCG--GCTCTCTTACAGAGG--ACCCCGAG----------------------CGTC-TTCG-GACG-------------------T-----CTCATCGAAGAAGCTGGCGGCG----A--GG---A-----C-GA-GCCCGA-CCC-----CCTGT--GGG-AA--GGGC-GA-G-----G-CC--G----CGCCGT--GGGC--T-CGGGAG-GGCTTTCTGATCGACG
#=GC SS_cons ---------------((((..-.))))---------------------((((((....))))))-----------<<<<<<----------------[[[[[[[[[[[[[[------------------((((((.((((((..(((((((.((((((......))))))..)))))))..))))))..))).)))-------------((((((((...((((....((((((...(((((..((((..((......))))))....)))))...))))))..))))...))))))))--]]]]]]..]]]]]]-]]-------->>>>>>
//
Image source U3 model for fungi related to S. cerevisiae:
# STOCKHOLM 1.0
#=GF WK Small_nucleolar_RNA_U3
#=GF NC 91.8
#=GF RT Comparative analysis of eukaryotic U3 snoRNA.
#=GF TC 96.1
#=GF CL CL00100
#=GF RN [3]
#=GF RM 19875933
#=GF RL RNA Biol. 2010;6:503-507.
#=GF AU Marz M; 0000-0003-4783-8823
#=GF CC and are necessary for the rRNA processing functions of U3 snoRNA.
#=GF CB cmcalibrate --mpi CM
#=GF DR snoopy; Homo_sapiens300287;
#=GF ID Fungi_U3
#=GF SS Published; PMID:19875933
#=GF RA Marz M, Stadler PF
#=GF SQ 66
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 20.23 -Z 549862.597050 CM SEQDB
#=GF DE Fungal small nucleolar RNA U3
#=GF AC RF01846
#=GF SE Published; PMID:19875933
#=GF GA 95.0
#=GF BM cmbuild -F CM SEED
#=GF TP Gene; snRNA; snoRNA; CD-box;
X05499.1/123-455 -UAAC-ACAUU--CUA----CAGUAGGA-UCAUUUCUAUAGGAA-UC-GU-CAC-----UCU--UUGACUCUU-CAA--AAGAGCCACUGAAUC---CAACUUGGUUGAUGAGUCCCA--UAACC-UUUGUACCC--CAGAGUGAGAAACCG--------AAAUUGA------AUCUAAAUU------------------------AGCUUGGUCCGCAAUCCUUAGCGGUUCGGCCAUCU-----AUAAUUUUGAAUAAAAAUUUUCU---------U------------UGCCGUUGCA--------------UUUGUAGUUUUU-U-C----------------------------------CUUUG------------------------------------------GAAGUAAUU-ACA-AU-------AUUUUAUGGCG-----------------------CGAUGAUCUUGACCCAU--------CCUAUGU--ACUUCUUU---UUUG---AAGG----G--AUAGGGC------------------------------------------------UCUA-UGGGUGGGUACAAAUGGC--AGUCUGACAAGU
M18578.1/157-489 -UAAC-ACAUU--CUA----CAGUAGGA-UCAUUUCUAUAGGAA-UC-GU-CAC-----UCU--UUGACUCUU-CAA--AAGAGCCACUGAAUC---CAACUUGGUUGAUGAGUCCCA--UAACC-UUUGUACCC--CAGAGUGAGAAACCG--------AA-----AUGA--AUCUAAAUU------------------------AGCUUGGUCCGCAAUCCUUAGCGGUUCGGCCAUCUA----UAAUUUUGAAUAAAAAUUUUGCU---------U------------UGCCGUUGCA--------------UUUGUAGUUUUU-U-C----------------------------------CUUUG------------------------------------------GAAGUAAUU-ACA-AU-------AUUUUAUGGCG-----------------------CGAUGAUCUUGACCCAU--------CCUAUGU--ACUUCUUU---UUUG---AAGG----G--AUAGGGC------------------------------------------------UCUA-UGGGUGGGUACAAAUGGC--AGUCUGACAAGU
M26648.1/338-671 -UAAC-ACAUU--CUA----CAGUAGGA-UCAUUUCUAUAGGAA-UC-GU-CAC-----UCU--UUGACUCUU-CAA--AAGAGCCACUGAAUC---CAACUUGGUUGAUGAGUCCCA--UAACC-UUUGUACCC--CAGAGUGAGAAACCG--------AAAUUGA------AUCUAAAUU------------------------AGCUUGGUCCGCAAUCCUUAGCGGUUCGGCCAUCUA----UAAUUUUGAAUAAAAAUUUUGCU---------U------------UGGCGUUGCA--------------UUUGUAGUUUUU-U-C----------------------------------CUUUG------------------------------------------GAAGUAAUU-ACA-AU-------AUUUUAUGGCG-----------------------CGAUGAUCUUGACCCAU--------CCUAUGU--ACUUCUUU---UUUG---AAGG----G--AUAGGGC------------------------------------------------UCUA-UGGGUGGGUACAAAUGGC--AGUCUGACAAGU
AJ507112.1/1-294 -GUCG-ACGUA--CUU----C-AUAGGA-UCAUUUCUAUAGGUC-AC-GU-CCC-----UCU--UUGACUCUU-CAA--AAGAGCCACUGAAUC---CAACUUGGUCGAUGAGUGAGA--UA-CC-CUUACACCC-UCAAAGUGAGACUAUA--------UUU--AG---C--UU-------------------------------------GACUGUGAUCCUUAGCGGUCUG-------------------GUCAUCUACCUAUUUU---------U------------UGCCUUUUAG-------------UUAUAAGACUU-G-G-A-----------------------------------UUUA------------------------------------------UCCUGUGUC-U---U---------UUAAAAGGAG-----------------------CGAUGAUCUUGACCCCU--------UUCUUCA--U--ACUUC---UUCG---GAGG----UUUUAGAU-----------------------------------------------------U-GGGGUGGGUGUAAGUGGC--AGUCUGACAAGU
X05498.1/323-655 -UAAC-ACAUU--CAA----CAGUAGGA-UCAUUUCUAUAUUAA-UC-GU-CAC-----UCU--UUGACUCUU-CAA--AAGAGCCACUGAAUC---CAACUUGGUUGAUGAGCCCCA--UAACC-UUUGUACCC--CAGAGUGAGGAAAUG-------A-AAUCGA------AUUUAAAUU------------------------AGCUUGGUCCGCAAUCCUUAGCGGUUCGGCCAUCU-----AUAAUUUUGAAUAAAAUUUUGCU---------U------------UGCCGUUGCA--------------AUUGUGAUAACU-U-C----------------------------------CUUUG------------------------------------------GAAUUUGUU-GCG-AU-------AUUUAAUGGCG-----------------------CGAUGAUCUUGACCCAU--------CCUAUGU-----GCUUCCAUUUUG---GAAG----G--AUAGGGA------------------------------------------------UUCA-UGGGUGGGUACAAAUGGC--AGUCUGACAAGU
HQ329066.1/118-440 -GUCG-ACGUA--CUU----C-AUAGGA-UCAUUUCCAUAGGUC-GC-GU-CCC-----UCU--UUGACUCUU-CAA--AAGAGCCACUGAAUC---CAACUUGGUUGAUGAGUGAGA--UUACC-CUUAUACCC-UCAAAGUGAGAUAAUA--------AC-----AUGA--AAUUUUUUGCUUGACCG-------UGAUUCUUUGCAAUCUGG-----------CCAUC-------------------------UACUUAUAAUGUU---------U------------UGCCUUUAAC--------------UUUUUUUUGAUG-C--UAAC-------------------------CUANU------CAUA-------------------------------GGUGA-UGCAUUUAA-UAU-U---------UAUAAAGGAG-----------------------CGAUGAUCUUUACCCUU--------UUCAU----UGUGCCUU---CUAG---GAGG----AUUUUGAA-----------------------------------------------------U-UGGGUGGGUAUAAGUGGC--UGUCUGACANGU
Z78433.1/167-580 -UAAC-ACAUU--CUA----UAGUAGGA-UCAUUUCUAUAGGAA-UC-GU-CAC-----UCU--UUGACUCUU-CAA--AUGAGCCACUGAAUC---CAACUUGGUUGAUGAGCCGCA--UAACC-UUUGUACCC--UAGAGUGAGAAACAU--------AC-----UUCC--GAAGUUGACGCCUCUCCCGC-AAGGGAGAUAUAGUUUGGUUCCGUAAUCCUAAGCGGUUCGGUCAUCUGUACUGUCUCUUCAAAACCCCUUGCGUU---------U------------UGCUGUUUGC--------------GUAUGCCCGUUA-U-ACA------------------------------AGUUUACU----------------------------------------UGGAAAUGGG-CUG-U---------UAAAAUGGCG-----------------------CGAUGAUCUUUACCCAU--------CAUGUAU-ACUUCU------CUCAGUGGAAG-----GAACAUGUGUUUUAUGGCCUAGGAGUUGAGUGUCUUGGACAUGAAUUCUCUGUUCAGGGUC-UGGGUGGGUACAAAUGGC--AGUCUGACAAGU
X91005.1/72-372 -UGUG-CCU------A----UAGUAGGA-UCAUUUCUAUAGUUU-AC-GU-CCC-----UCU--UUGUCUCUU-CUA--AAGAGCCACUGAAUC---CAACUUGGUUGAUGAGGUAUA--UA-CC-UUUGUGCCC--UAGAGUGAGAUUAAAC-----UU--U---C------AUUUAGCUUGUCUAU-----------AAUCCUUUGCGGUUUA-----------GUCAUCU----------------------AUUCUUUGAAGUUU---------U------------UGCCUUUUUU--------------GUUUAUUCCUGA-U-U----------------------------------AUUAUCCUUG-------------------------------UGAUAUUGUCAUGGA-UGU-CU-------UAUAAAAGGAG-----------------------CGAUGAUCUCGACCCUA--------UCUAUG-----CACUUU---UUCG---AAAG-----GGAUAGA-----------------------------------------------------UGUGGGUGGGUGCAAAU-----------------
EU526092.1/80-340 ---------AC--CAA----CAGGAGAA-UCAUUUCUAUAGUAU-UU-GU-CCUC---UUUU--GUGUUCCCU--AA--AGGAGCCACAGAUCC---CACCCGGGUUGAUGAACU--A--UAUCC-UCGUUUCCC--AACAGUGAGGUCCCU--------UU-----UA---------------------------------------------------------------------------------------------UUUUACU---------C------------UCGCUCUGCCUGAA------AAGGUGGCGAUCUUGC---------------------------------------UUCAC----------------------------------------U--GCAUGAU-UGU-A---------UAGAGAGUGG-----------------------CGAUGAUCUGUACCCCGAU----UUCCCAA----GGUCUGCC---UUCG---GGCG----C--UUGGG-----------------------------------------------------C-GGGGUGGGUUUCGAUGGA--AGUCUGACCGG-
EU526096.1/108-373 ---------AC--CAA----CAGGAGAA-UCAUUUCUAUAGUAU-UU-GU-CCUC---UUUU--GUGUUCCCU--AA--AGGAGCCACAGAUCC---CACCCGGGAUGAUGAACU--A--UAUCC-UCGUUUCCC--AACAGUGAGGUCCUU--------UU-----U-------------------------------------------------------------------------------------------------AUUU---------U------------UUACUCUCGUCUUGCCUGCAAAGGU---GGCGAUCU-G-C----------------------------------UUUAUA----------------------------------------AGUAGAU----UGU-A---------UAGAGAGUGG-----------------------CGAUGAUCUGUACCCCGAUUUUUUU--CUCAA--GGUCUGCC---UUCG---GGCG----CUU--GGG-----------------------------------------------------C-GGGGUGGGUUUCGAUGGA--AGUCUGACCGG-
X56189.1/89-342 -AUCG-ACGAU--ACU----CCAUAGGA-UCAUUUCUAUAGUAU-AC-GU-CCG-----GCU--UGGGUUUCC-UAA--CCUAGCCACAGAACU---CAACACGGAUGAUGAUAGAAG----GCA-CCGUUGCCC-GCAGAGUGAGAAUUUU--------UA-----CUU---------------------------------------------------C---------------------------------------------U----------U------------UGAGGAUGUG-------------CUGAUCGAUUUGG---C----------------------------------UUUUU------------------------------------------G-CUUAAUU-GUU-G--------UGCUAUCUUU-AU------------------UUGCGAUGAUCUCUUACAUG--------AUAUG-U-------UCC---UUUU---GG--------UCGUGU-----------------------------------------------------C-AUGUAGGGCAGCUGGUGU--UUUCUGACGUGU
X13850.1/316-569 -CGUA-UCGAU--ACU----CCAUAGGA-UCAUUUCUAUAGUAU-AC-GU-CCU-----UCU--UGGGUUUCC-UAA--CCUAGCCACAGAAGU---GAACACGGAUGAUGAUAGGAG--GCACC-GUUG--CCU--CAGAGUGAGGACUUU--------UA-----AUU---------------------------------------------------CU----------------------------------------UUGAAG---------G------------CAUGCUUUUC--------------GAUU------AG-G-U----------------------------------UUUUU------------------------------------------ACCUAAUU-------GUUUUGCUGUCAGAGUAUG-----------------------CGAUGAUCUCUUACAUG--------AUAUGUU--U-----CC---UUUU---GG--------UCGUAU-----------------------------------------------------U-AUGUAGGG--CAGCUGGUGUUUUCUGACGUGU
EU526093.1/1-192 ----------------------------------------------------------------------------------------------------CCGGGUUGAUGAACU--A--UAUCC-UCGUUUCCC--AACAGUGAGGUCCCU--------UU-----UA---------------------------------------------------------------------------------------------UUUUACU---------C------------UCGCUCUGCCUGAA------AAGGUGGCGAUCUUGC---------------------------------------UUCAC----------------------------------------U--GCAUGAU-UGU-A---------UAGAGAGUGG-----------------------CGAUGAUCUGUACCCCGAU----UUCCCAA----GGUCUGCC---UUCG---GGCG----C--UUGGG-----------------------------------------------------C-GGGGUGGGUUUCGAUGGA--AGUCUGACCGG-
EU526095.1/1-182 -----------------------------------------------------------------------------------------------------GCGGUUGAUGAUCA--A--UAUCC-UCGGCGCCC--AACAGUGAGGUCCUU-------------------------------------------------------------------------A------------------------------------UUUACUC----------------------UCGCUCUGCCUGC-------AAAG----GUGGC-------GG-----------------------------UCGCUUCAC----------------------------------------G--GCGAUUG---U-A---------UAGAGAGUGG-----------------------CGAUGAUCUGUACCCCGAU----UUCCAGAG----GUCUGCC---UUCG---GGCG------CUUUGG-----------------------------------------------------C-GGGGUGGGUGUCGAUGGA--AGUCUGACGC--
ACIW01002196.1/621-842 -AGCG-CAGUA--CUU----CA-UAGAA-UCAUUUCUAAUAGUA-UG-CA-UCCUU-CUCUG--A-GUUACU--CUA---AGUAGCCACAGAAUCUCCAUCCUGGUUGAUGACUAUCA----GCC-UCGAUGUCC--CGGAGUGAGGCCUUA--------UUUACGACU---------------------------------------------------GC------------------------------------------------------------------------------------------------------------------------------------------------UUCG----------------------------------------------------------------------------GCGGU-------------CGUGGCGAUGAUCUUCAGCUAA--------CCGG-----CUGUGUAC---UUCG---GU-CA--CA---CCGG-----------------------------------------------------A-AGGCAGGACGUUGAUGGC--AAUCUGACAGGC
AACG02000145.1/3310-3640 ---UA-ACACA--UUCA--ACAGUAGGA-UCAUUUCUAUAGGAA-UC-GU-CAC-----UCU--UUGACUCUU-CAA--AAGAGCCACUGAAUC---CAACUUGGUUGAUGAG-CCCA--UAACC-UUUGUACCC--UAGAGUGAGA--------------------AAUUGAAAUUAAUCUAA-------------------AUUAGCUUGGUCCGCAAUCCUUAGCGGUUCGGCCAUCU-----AUAAUUUUUAACAAAUUUUGCUU----------------------UGCCGUUGCA--------------UUUGUAAUUUCU-U-C----------------------------------CUUUG------------------------------------------GAAGCUUUU-ACG-AU-------CUUUAAUGGCG-----------------------CGAUGAUCUUGACCCAU-------------CCUAUGUACUUC---CUUUUUGGAAGGGAUAGGGCUUC-----------------------------------------------------A-UGGGUGGGUACAAAUGGC--AGUCUGACAAGU
AAGI01000148.1/11337-11557 -GCUG-CAGUA--CUU----C-AUAGAA-UCAUUUCUAU-AGUU-AGUCG-UCCUC-UUCUG--A-GCUUCU--CAA---AAAAGCCACAGAUUCUCCAACCUGGUUGAUGAGUUUCA----GCC-CCGAUGUCC--CGGAGUGAGGCCUUA---------UUACGAUU---------------------------------------------------GC------------------------------------------------------------------------------------------------------------------------------------------------UUCG----------------------------------------------------------------------------GCAAA-------------CGUGGCGAUGAUCUUCAGCCAA--------CUGG-----UCUCGUAC---UUCG---GU-CG--AG---CUGG-----------------------------------------------------A-CGGCAGGACGUUGGUGGC--AAUCUGACAGGC
AAHF01000006.1/1528382-1528680 ----U-ACUAC--AGU----UC--AAAGAAUCACUUUAGAGUAG-AC-GU-CCCAC-CUCUG--A-GCUCUU-CUA----AAGAGCCACAGAAUCUCCACCCUUGCUGAUGACUGCUA--UGUCC-UCGAUGCCC--UAAAGUGAAGCCGUU--------CUUACUCC-----------------------------------------------------C-----------------------------------------------GAUU-CGACC------------UUGCUUCG-U-------------UCCGACGCUCUGA---ACGAC--------------------------UUGUUGCAAAACAA--------------------------------GCUUGU-UCGGGCU-GUU-G--------GAUGUUGCUCUGGUCCAG---------GGAGUGGUGAUGAUCUUGACCUUG--------UCCUGAC--GUCUAGAC---UUCG---GUCG-----GUC-GGA-----------------------------------------------------C-UUGGUGGGUGUCGA-GGA--GGUCUGAAAGGU
AACM02000135.1/152192-152462 -GUCG-ACAAU--ACU----UCAGAGAA-UCAUUUCUAUAGUAU-UC-GA-CCUU---CUCU---UGGUUCC-CUAA--AAGAGCCACAGAUCC---CACCCUGGUUGAUGAGUG-UA--UAUCC-UCGACACCC--UAGAGUGAAUACC-UU-----GGUCCUCUCGCCC----------------------------------------------UAUCCGCAA-------------------------------------GGAUGG---------------------------------------------------------C-G-GUGG---------------------------CUGUCUCGUGCA-----------------------------------GCUGCUGU------------------------------AUAGAGAGUU---UGUUUCCUCUUGAUGAUCUCGACCCCA--------GCUGUG----GUCUGCC---UUCG---GGCG------CGUGGC-----------------------------------------------------U-GGGGUGGGUGUUGAUGGA--CGUCUGACAGGC
AABZ01000565.1/2656-2989 -UAAC-ACAUU--CUA----CAGUAGGA-UCAUUUCUAUAGGAA-UC-GU-CAC-----UCU--UUGACUCUU-CAA--AAGAGCCACUGAAUC---CAACUUGGUUGAUGAGCCCCA--UAACC-UUUGUACCC--CAGAGUGAGG--------------------AACUAAAAUUAAAUCUAA------------------AUUAGCUUGGUCCGCAAUCCUUAGCGGUUCGGCCAUCUA---UAAUUUUGAAUCAAAAUUUUGCUU----------------------UGCCGUUGCA--------------UUUGUAAUUUCU-U-C-----------------------------------UUCG------------------------------------------GAAGUUAUU-ACG-AU-------AUAAAAUGGCG-----------------------CGAUGAUCUUGACCCAU-------------CCUAUGUACUUC--C-UUUUUGGAAGGGAUAGGGCUUC-----------------------------------------------------A-UGGGUGGGUACAAAUGGC--AGUCUGACAAGU
AAFO01000024.1/12981-13296 -GUCG-ACGUA--CUU----C-AUAGGA-UCAUUUCUAUAGGUC-AC-GU-CCC-----UCU--UUGACUCUU-CAA--AAGAGCCACUGAAUC---CAACUUGGUUGAUGAGUGAGA--UUACC-CUUGUACCC-UCAAAGUGAGAAAU-----------------AACAUGAAAUUUU---------------------------UGCUUGACUGUGAUUCUUUGCAAUCUGGU---------------CAUCUACUUAUA-AUGUU---------U------------UGCCUUUGACUU---------GAUGCUAGCCUUUCU-U-U-----------------------------------UUUG------------------------------------------AAGGUAAUG-C-A-GCU-----AUUAUAAAGGAG-----------------------CGAUGAUCUUUAUCCUU--------UUCA----UUGUGCCUU---CUAG---GAGG---AU-UUUGAA-----------------------------------------------------U-UGGGUGGGUACAAGUGGC--UGUCUGACAAGU
AAKD03000017.1/74657-74959 --ACU-GCCAC--AGU----UC--AAAGAAUCACUUUAGAGUAG-AC-GU-CCCAC-CUCUG--A-GCUCUU-CUA----AAGAGCCACAGAAUCUCCACCCUUGCUGAUGACUGCUA--UGUCC-UCGAUGCCC--UAAAGUGAAGCCGUU--------CUUACUCC-----------------------------------------------------C-----------------------------------------------GCCU-CGACC------------C------CGCGGC--------GCUCCGACGCUCACA---ACGAU-------------------------UCUGUCGCAAGACGG-------------------------------AGUCUGU-UUGGGCU-GUU-GGUU---GCUGCG-----AUGGUCCAG---------GGAGUGGUGAUGAUCUUGACCUUG--------UCCUGAC--GUCUUGAC---UUCG---GUCG-----GUC-GGA-----------------------------------------------------U-UUGGUGGGCGUCGA-GGA--GGUCUGAAAGGU
AAIM02000163.1/33709-33987 -GUCG-ACAAU--ACU----UCAGAGAA-UCAUUUCUAUAGUAU-UC-GA-CCUU---CUCU---UGGUUCC-CUAA--AAGAGCCACAGAUCC---CACCCUGGUUGAUGAAUG-AA--UAUCC-UCGAUGCCC--UAGAGUGAAUACCCCUUUUCUGGUCCUCUCGAUC----------------------------------------------UGUCCGCAA-------------------------------------GGAUGG---------------------------------------------------------C-G-GUGGU-------------------------CUGCUCUUUUGAGU---------------------------------GGCUGCUGU------------------------------AUAGAGAGA-----UGUUACUCUUGAUGAUCUCGGCCCUU--------GGGACG----GUCUGCC---UUCG---GGCG------CGUUCU-----------------------------------------------------U-GGGGCGGGCAUUGAUGGA--CGUCUGACAGGC
Z78438.1/1-404 -GUCG-ACGUA--CUU----C-AUAGGA-UCAUUUCUAUAGGAA-UC-GU-CAC-----UCU--UUGACUCUU-CAA--AAGAGCCACUGAAUC---CAACUUGGUUGAUGAGCCGAA--GAACC-UUUGUACCC--AAGAGUGAG---------------------AAAAAAGAAUGUAUUA---------------------UUAGCUUGGUCCACAACCCUUAGCGGUUUGGCCAU----------CUACUCCCACAUUUUUGCUU----------------------UGCCUUUUGCAU---------AUGGUUUGUGUAUGG-A--UAGAGAACUUAGCUUGGUGGUUUAGAAGUAGGAAUUUCGAUUCUAUGCUUUUUGAACUUACCGGCUUUUUUCUUGUUUUAACUCC-UGCA-UGA-ACCG--CCUUUUAAUUGGCG-----------------------CGAUGAUCUUUGCCCAG--------UUUGUGGACUU--CUUC---GUGA---GGGG---ACAAACGUA-----------------------------------------------------U-UGGGUGGGUACAAAUGGC--AGUCUGACAAGU
AAFT01000078.1/54796-55089 -GUCG-ACGUA--CUU----C-AUAGGA-UCAUUUCUAUAGGUC-AC-GU-CCC-----ACU--UUGACUCUU-CUA--AAGAGCCACUGAAUC---CAACUUGGUUGAUGAGCGAGA--UACCC-UU-AUGCCC-UCAAAGUGAGA--------------------AUAGAUUUAGC--------------------------------UUGUCCACGAUCCUUUGCGGUCUGGUC-------------AUCUAUAAUUUGU---------------U------------UGCCUUUUAU-------------UU--AGCGC-AGA-G-C----------------------------------UUUGU------------------------------------------GCUCUUGCG-UU--U---------UCAAAAGGAG-----------------------CGAUGAUCUUGACCACU--------UUCUAAA-U---GCUCU---CUCG---GGAG----UCUUAGUU-----------------------------------------------------A-GUGGUGGGCAUAAGUGGC--UGUCUGACAAGU
X56982.1/37-291 -AUCG-ACGAU--ACU----CCAUAGGA-UCAUUUCUAUAGUAU-AC-GU-C--------CG--GCUUGGGUUUCCU--AACCU-AGCCACAGAACUCAACACGGAUGAUGAUAGGAG--GCACC-GUUG--CCC-UCAGAGUGAGGACUUUUAA-UUCUUUGA-AGGCA-------------------------------------------------UGC-----------------------------------------------U------UUU------------CGAUUAGGU------------------------------------------------------------------UUUU-----------------------------------------U-------------------------ACCUAAUUGUUUUGCUGU-----CUUUCUAUGCGAUGAUCUCU-UACAU--------GAUAUGUUUCC---------UUUU-------G--GU-CGUAUU-----------------------------------------------------A-UGUA-GGG--CAGCUGGUGUUUUCUGACGUGU
M26649.1/1-333 -GUCG-ACGUA--CUU----CA-UAGGA-UCAUUUCUAUAGGAA-UC-GU-CAC-----UCU--UUGACUCUU-CAA--AAGAGCCACUGAAUC---CAACUUGGUUGAUGAGUCCCA--UAACC-UUUGUACCC--CAGAGUGAGA--------------------AACCGAAAUUGAAUCUAA------------------AUUAGCUUGGUCCGCAAUCCUUAGCGGUUCGGCCAUCUA---UAAUUUUGAAUAAAAAUUUUGCUU----------------------UGGCGUUGCA--------------UUUGUAGUUUUU-U-C----------------------------------CUUU------------------------------------------GGAAGUAAUU-ACA-AU-------AUUUUAUGGCG-----------------------CGAUGAUCUUGACCCAU-------------CCUAUGUACUUC---UUUUU-UGAAGGGAUAGGGCUCU-----------------------------------------------------A-UGGGUGGGUACAAAUGGC--AGUCUGACAAGU
AAIH02000008.1/92390-92671 -CUUG-CCUAC--AGU----UC--AAAGAAUCACUUUAGAGUAG-AC-GU-CCCAC-CUCUG--A-ACUCUU-CUA----AAGAGCUACAGAAUCUCCACCCUUGCUGAUGACUUCUA--UGUCC-UCAAUGCCC--UAAAGUGAAGCCGUG--------UUUACUUC-----------------------------------------------------C-----------------------------------------------GUCU-CGACG------------G--------U--------------UGGUAUCUGCGA---ACGA---------------------------CUCGCUUCGGUGA---------------------------------GCUUGU-UCG-AG--UGC-C---------UC-------UCGUCCAG---------GGAGUGGUGAUGAUCUUUACCUUG--------UCUCGAU--GUCUUGAU---UUCG---GUCG-----GUC-GGA-----------------------------------------------------C-UUGGUGGGUGUUGA-GGA--GGUCUGAAAGGU
AAVQ01000002.1/348681-348994 -GUCG-ACGUA--CUU----C-AUAGGA-UCAUUUCUAUAGGUC-AC-GU-CCC-----UCU--UUGACUCUU-CAA--AAGAGCCACUGAAUC---CAACUUGGUUGAUGAGUGAGA--UA-CC-CUUAUACCC-UCAAAGUGAG---------------------AUACUAGUUUAG------------------------------CUUGUCCGUGAUUCUUUGCAAUCCG-------------------GUCAUCUACGUUUUGU---------U------------UGCCUUUUAG--------------UAUAAUCGCC------UGCGGUA--------------------UUUUGGAUUCGUUCCAAUAGC-----------------------UGCUAAUGAU--------------U----------UAAAAGGAG-----------------------CGAUGAUCUUUACCCUU--------UGUGA--CAUG--CCUU---CUAG---GAGGA--CU--UUGCA-----------------------------------------------------U-UGGGUGGGUAUAAGUGGC--UGUCUGACAAGU
AAID01000422.1/14605-14873 -AUCG-ACAAU--ACU----UCAAAGAA-UCAUUUCUUUAGUAA-AC-GU-CCUU--CUUCU--GU-GUUCU-CUAC--AAGAGCCACAGACUC---CAACUGGGACGAUGAGCC-----GAUCC-UCGAUGCCC--UAGAGUGAAACCG-UU-----UUUGCUUUCGUUUC---------------------------------------------UCUCCGCAA-------------------------------------GGAGGG--------------------------------------------------------AC-G-AGUUGA-----------------------GUCCUGGCAA-CAGUGA------------------------------CUUGAUUUGU------------------------------AUAGA------------AAGUGGUGAUGAUCUCGACCCUC--------UUUUGG------UUCUC---UUAG---GAGU------CUGGAU-----------------------------------------------------U-GGGGUGGGUGUUGAUGGA--CGUCUGACCAGU
FM992690.1/915250-915563 -GUCG-ACGUA--CUU----C-AUAGGA-UCAUUUCUAUAGGUC-AC-GU-CCC-----UCU--UUGACUCUU-CAA--AAGAGCCACUGAAUC---CAACUUGGUUGAUGAGUGAGA--UUACC-CUUGUACCC-UCAAAGUGAGAAAU-----------------AACAUGGAAUUUU---------------------------UGCUUGACUGUGAUUCUUUGCAAUCUGGU---------------CAUCUACUUAUA-AUGUU---------U------------UGCCUUUGACUU---------GAUUCU----UUCCU-U-U----------------------------------UUUUU-----------------------------------------UGAGGUUAUG-C-A-UCU-----AUUAUAAAGGAG-----------------------CGAUGAUCUUUACCCUU--------UUCA----UUGUGCCUU---CUAG---GAGG---AU-UUUGAA-----------------------------------------------------U-UGGGUGGGUACAAGUGGC--UGUCUGACAAGU
Y00887.1/157-490 -UAAC-ACAUU--CUA----CAGUAGGA-UCAUUUCUAUAGGAA-UC-GU-CAC-----UCU--UUGACUCUU-CAA--AAGAGCCACUGAAUC---CAACUUGGUUGAUGAGUCCCA--UAACC-UUUGUACCC--CAGAGUGAGA--------------------AACCGAAAUUGAAUCUAA------------------AUUAGCUUGGUCCGCAAUCCUUAGCGGUUCGGCCAUCUA---UAAUUUUGAAUAAAAAUUUUGCUU----------------------UGCCGUUGCA--------------UUUGUAGUUUUU-U-C----------------------------------CUUUG------------------------------------------GAAGUAAUU-ACA-AU-------AUUUUAUGGCG-----------------------CGAUGAUCUUGACCCAU-------------CCUAUGUACUUC---UUUUU-UGAAGGGAUAGGGCUCU-----------------------------------------------------A-UGGGUGGGUACAAAUGGC--AGUCUGACAAGU
CU633898.1/197623-197893 -GUCG-ACAAU--ACU----UCAGAGAA-UCAUUUCUAUAGUAG-UC-GU-CCUC---UUUU--GU-GUUCC-CUAA--AGGAGCCACAGAUCC---CACCCGGGUUGAUGAACG--A--UAUCC-UCGGCGCCC--AACAGUGAGGAGCCUUU---UUUUACUCUCGACC----------------------------------------------UGCCUGCAA-------------------------------------AGGUGG---------------------------------------------------------C-G-GUCGC--------------------------UGGCCUUUGUGCU----------------------------------GCGGCUGU------------------------------AUAGA------------GAGUGGCGAUGAUCUGUACCCCG-------AUUUCUCGAGGUCUUGCC---UUCG---GGCG---CUU---GAA-----------------------------------------------------C-GGGGUGGGUGUCGAUGGA--AGUCUGACCGGC
AAKE03000008.1/313515-313815 --UCU-GCCAC--AGU----UC--AAAGAAUCACUUUAGAGUAG-AC-GU-CCCAC-CUCUG--A-GCUCUU-CUA----AAGAGCCACAGAAUCUCCACCCUUGCUGAUGACUGCUA--UGUCC-UCGAUACCC--UAAAGUGAAGCCGUU--------CUUACUCC-----------------------------------------------------C-----------------------------------------------GACU-CGACC------------UUGCUUCG-U-------------UCCGACGCUCUGA---ACGAC--------------------------UUGUUGCAAAACGA--------------------------------GCUUGU-UCGGGCU-GUU-G--------GAGGUUGCUCUGGUCCAG---------GGAGUGGUGAUGAUCUUGACCUUG--------UCCUGAC--GUCUAGAC---UUCG---GUCG-----GUC-GGA-----------------------------------------------------C-UUGGUGGGUAUCGA-GGA--GGUCUGAAAGGU
CR382137.2/1282518-1282814 -GUCG-ACGUA--CUU----C-AUAGGA-UCAUUUCUAUAGGUC-AC-GU-CCC-----UCU--UUGACUCUU-CAA--AAGAGCCACUGAAUC---CAACUUGGUUGAUGAGUGAGA--UACCC-UU-AUACCC-UCAAAGUGAGA--------------------ACUAUAUUUAG-------------------------------CUUGUCUGUAAUCCUUAGCGAUUCGGUC-------------AUCUAUUAUUUGU---------------U------------UGCCUUUUAUC-----------UUG--AAGAUUUGG-A-A-----------------------------------UUUA------------------------------------------UUCCUCAUC-UU--U---------ACAAAAGGAG-----------------------CGAUGAUCUUUACCCUU--------UUUUA----UAUACUUC---UUCG---GAUG----UUUUAAAC-----------------------------------------------------U-AGGGUGGGUGUAAGUGGC--UGUCUGACAAGU
AAGT01000619.1/74722-75016 -AUCG-ACAAU--ACU----UCAAAGAA-UCAUUUCUUUAGUAA-AC-GU-CCUU--CUUCU--GU-GUUCU-CUAC--AAGAGCCACAGACUC---CAACUGGGAAGAUGAGUC-----GUUCC-UCAAUGUCC--UAGAGUGAA-GCC-UU------UUGCUUUCGUUUUAUUUCU-------------------------------CUUUUUCUUUCUCUCUU------------------------------------UUGGGGGAAGGGGGAGA------------GAGGAGUA--------------------------AU-G-UUGUU-------------------------UUUUGGUAA-CAAG---------------------------------AAAUGAUGU------------------------------AUAGA------------AAGUGGUGAUGAUCUCGACCCCU--------UUUUGA------UUGGC---UUCG---GUCG------UUGGAU-----------------------------------------------------U-GGGGUGGGCGUUGAUGGA--UGUCUGACCAGU
AM270263.1/106525-106819 -UUUG-CCUAC--AGU----UC--AAAGAAUCACUUUAGAGUAG-AC-GU-CCCAC-CUCUG--A-GCUCUU-CUA----AAGAGCCACAGAAUCUCCACCCUUGCUGAUGACUGCUA--UGUCC-UCGAUGCCC--UAAAGUGAAGCCGUU---------UUACUUC-----------------------------------------------------C-----------------------------------------------GACU-CGACC------------UUG------CA-----------UUUGCACGCUCUGU-U-ACAAU--------------------------CUGUUUUCGGAUAG--------------------------------ACUUGU-UUCGGGU-GUC-G--------GUG----UGAUGGUCCAG---------GGAGUGGUGAUGAUCUUUACCUUG--------UCAUGAU--GUCUUGAC---UUCG---GUCG-----GUC-GGA-----------------------------------------------------C-UUGGUGGGUGUCGA-GGA--GGUCUGAAAGGU
CR382132.1/3135255-3135515 -AGUG-AC-GU--AUU----CCAUAGGA-UCAUUUCUAUAGGAC-AU-GU-CUC----U--C--AUGACUUCUUAAA--AGAAGCCACUUAUUC---AAACUUGGUUGAUGAGAUAGA----ACC-UGCAAACCC--CAGAGUGAGAACACAUU----UGUU-----UGAUUG-------------------------------------------UUUGUCCUUGUG--------------------------------ACUCAGUCAUCUU-AUUA---------------------------------------UUCCC--GGC-G-C-----------------------------------GCAA------------------------------------------GCGUUCAAG-GAG--------------------------------------------CGAUGAUCUUGUCCCUU--------UGUU-----UGAGCCUC---UCUG---GAGG-----AGUGACU-----------------------------------------------------U-CGGGUGGGUUUGUAUGGC--AGUCUGACAAGU
AACD01000007.1/392675-392957 UGCCU-UCUAC--AGU----UC--AAAGAAUCACUUUAGAGUAG-AC-GU-CCCU--CAUUG--A-GCUCAU-CUA----AUGAGCCACACCCC--CAACCCUUGCUGAUGACUUCUA--UGUCC-UCGAUGCCC--UAAAGUGAAGCCGUG--------UUUACUCC-----------------------------------------------------C-----------------------------------------------GCCU-CGACC---------------------UU------------GUCUUCUCCGGU----ACAA---------------------------ACUGCUUUGGCGG---------------------------------GCUUGU--UCC-GA-GUU-GGC-----GCCU--------GGUCUAG---------GGAGUGGUGAUGAUCUUGACCUUG--------UCGUGGC--GUCUUGAC---UUCG---GUCG-----GCC-UGA-----------------------------------------------------C-UUGGUGGGUGUCGA-GGA--GGUCUGAAAGGC
AP007157.1/1106755-1107036 -CUUG-CCUAC--AGU----UC--AAAGAAUCACUUUAGAGUAG-AC-GU-CCCAC-CUCUG--A-ACUCUU-CUA----AAGAGCUACAGAAUCUCCACCCUUGCUGAUGACUUCUA--UGUCC-UCAAUGCCC--UAAAGUGAAGCCGUG--------UUUACUUC-----------------------------------------------------C-----------------------------------------------GCCU-CGACG------------G--------U--------------UGGUAUCUGCGA---ACGA---------------------------CUCGCUUCGGUGA---------------------------------GCUUGU-UCG-AG--UGC-C---------UC-------UCGUCCAG---------GGAGUGGUGAUGAUCUUUACCUUG--------UCUCGAU--GUCUUGAU---UUCG---GUCG-----GUC-GGA-----------------------------------------------------C-UUGGUGGGUGUUGA-GGA--GGUCUGAAAGGU
ABHY02000006.1/221131-221394 -AUCG-ACGAU--ACU----CCAUAGGA-UCAUUUCUAUAGUAU-AC-GU-C--------CG--GCUUGGGUUUCCU--AACCU-AGCCACAGAACUCAACACGGAUGAUGAUCGGUA--GCGCC-AUUG--CCC-GAAGAGUGAGAUAUUACUU-UCUUACUGAAUGGA------------------------------------------------UGCU-----------------------------------------------UU-----GUA------------GCUGGAUCC------------------------------------------------------------------UUUU-----------------------------------------U-------------------------GGAUCAAGUUGCAUAAUGGCAUCUGUUCAAGGCGAUGAUCUCU-UGCAU--------GAAUUGUUUCC---------UUUU--U----G--GU-CGAUUC-----------------------------------------------------A-UGUA-GGG--UAGUUGGCGUUUUCUGACGUGU
AAPO01000024.1/184329-184622 -GUCG-ACGUA--CUU----C-AUAGGA-UCAUUUCUAUAGUAG-AC-GU-CCC-----UCU--UUGACUCUU-CAA--AAGAGCCACUGAAUC---CAACUUGGUUGAUGAGUUAUGAUUACCC-UU-ACACCC-UCAGAGUGAGA--------------------AACACAAUUUUUU---------------------------UGCUUGACUAUGGUUCUCGAUAAUCUA--------------------GUCAUCUAGUUUGUU---------U------------UGCCUUGUUAG-----------CCAAUUAC--------------------------------------------UUUAC-----------------------------------------U--------G-UAA-U---------UGCGAAGGAG-----------------------CAAUGAUCUUGACCUUU--------UUUACUUUAUG--CCUU---UUUG---GAGG---AAAUUGUUU-----------------------------------------------------A-AAGGUGGGUGUAAGUGGC--UGUCUGACAAGU
CR380956.2/371024-371465 -UAAC-ACAUU--CUA----UAGUAGGA-UCAUUUCUAUAGGAA-UC-GU-CAC-----UCU--UUGACUCUU-CAA--AAGAGCCACUGAAUC---CAACUUGGUUGAUGAGCCACA--GAACC-UUUGUACCC--CAGAGUGAGAAACAAAC----CCAA-----UGGAGGUGACAUCUCUUCCGAAAG------GAAGAUGCAGUUUGGUUCCGUAAUCCUAAGCGGUUCGGUCAUCUG----UACUGUCCCUUCGCCCAACCCUUACG---UUU-------------UGCUGUUUGCG-----------UAUAGAAUUGGUUU-G-AUGCCC-----------------------ACAGGACUUCGGUCUUG------------------------------CGGGUGGACGACCUC-UUC-GACC--CCUUCAAAAUGGCG-----------------------CGAUGAUCUUUACCCAU-------------CUUGUGUACUUCU-CUUCGU-GGAAGGGACAAGUUUUUAUGGCCUAGGAGUUGAUAUCUUU------CGGGACAUCUUCUCUGUUUGGGUCU-UGGGUGGGUACAAAUGGC--AGUCUGACAAGU
AARE01001423.1/987-1250 -GACG-ACU-U--ACU----UCUAAGAA-UCAUUUCUAUAGUAU-AC-GU-CUCCUUCUGAU--UUUUUCGC-UUUA---GCGACAGAAUCCC----CACUCUUGCGGAUGACCU-UA--UGUCC-AGUAUGCCC--UAAAGUGAAACCGU----------GUGUUCC-----------------------------------------------------C-----------------------------------------------GCCU-CGACU------------U----------------------------------C-G-AUCAGA-----------------------UCUGGAUUCU-GUCCGG------------------------------GUUCUGUCGCU-----------------------------GUCCAG----------GGAAUGGUGAUGAUCUUGACCUUG--------CGCUAGC--GUCUUGAC---UUCG---GUCG-----GCUGCGU-------------------------------------------------------CUGGUGGGUGUACU-GGA--GGUCUGAAAGAG
CABE01000015.1/623590-623890 -GUCG-ACGUA--CUU----C-AUAGGA-UCAUUUCUAUAGUAG-AC-GU-CCC-----UCU--UUGACUCUU-CAA--AAGAGCCACUGAAUC---CAACUUGGAUGAUGAGGUCU----UGUCA--CCAGUCCAU-AAAGUGAGAACC-----------------AAUUUUGCU-----------------------------------UGACUAUGGUUUCUUAUAGCCUAG------------------UCAUCAAUUUGUUUUU---------U------------UGCCUCGUUAAU----------CAUUGCAAUUCUGU-U-U---------------------------------CUUCG------------------------------------------GGAACUUUU--UGC-A--------AUGUAGAGGAG-----------------------CGAUGAUCUUGAUCCUA--------UUUC---UUUAUACCCU----UUC---GGGGG--GAAUCGAUU-----------------------------------------------------U-GGGGUGGACUGU--UGGC--UGACUGACAAGU
AATM01000124.1/21634-21887 -AUCG-ACGAU--ACU----CCAUAGGA-UCAUUUCUAUAGUAU-AC-GU-C--------CG--GCUUGGGUUUCCU--AACCU-AGCCACAGAACUCAACACGGAUGAUGAUUGGAA--GCACC-GUUG--CCC-GAAGAGUGAGGCAAUUCUU--UCUUCGGGAGGG---------------------------------------------------AU--------------------------------------------------------A------------ACAGGAUCU------------------------------------------------------------------UUUUU----------------------------------------C-------------------------AGGUUCUGUUCUCCC----------UCUUCAGCGAUGAUCUCU-UACAC--------CUCUGGUUUCUC-GUCC---CCU----GGACG--GU-CCCGUC-----------------------------------------------------G-UGUA-GGG--CAGCUGGUGUAUUCUGACGUGU
AAFM01000009.1/176808-177101 -GUCG-ACGUA--CUU----C-AUAGGA-UCAUUUCUAUAGGUC-AC-GU-CCC-----UCU--UUGACUCUU-CAA--AAGAGCCACUGAAUC---CAACUUGGUUGAUGAGUGAGA--UA-CC-CUUACACCC-UCAAAGUGAG---------------------ACUAUAUUUAG-------------------------------CUUGACUGUGAUCCUUAGCGGUCUG-------------------GUCAUCUACCUAUUUU---------U------------UGCCUUUUAG-------------UUAUAAGACUU-G-G-A----------------------------------UUUA-------------------------------------------UCCUGUGUC-UU--U----------UAAAAGGAG-----------------------CGAUGAUCUUGACCCCU--------UUCUU--CAUA--CUUC---UUCG---GAGGU--UU--UAGAU-----------------------------------------------------U-GGGGUGGGUGUAAGUGGC--UGUCUGACAAGU
AAFU01000765.1/105651-105919 -GUCG-ACAAU--ACU----UCAGAGAA-UCAUUUCUAUAGUAU-UC-GU-CCUC---UUUU--GU-GUUCC-CUAA--AGGAGCCACAGAUCC---CACCCGGGUUGAUGAACG--A--UAUCC-UCGGCACCC--UACAGUGAGAUCC-UUU---UUUUACUCUCGUUC----------------------------------------------UGCCUGCAA-------------------------------------AGGCGG---------------------------------------------------------C-G-GUUG----------------------------UUGCUUCGUGCU----------------------------------GCGACUGU------------------------------AUAGA------------GAGUGGCGAUGAUCUGUACCCCGG------CUUUCUUGAGGACUUGCC---UUCG---GGCG---CUC---AGG-----------------------------------------------------C-GGGGUGGGUAUCGAUGGA--AGUCUGACCGGC
AAJN01000140.1/146399-146685 ------------------------AAAGAAUCACUUUAGAGUAG-AC-GU-CUCU--CAUUG--A-GCUUUU-CUA----AAAAGCCACAGAAUCUCCACCCUUGCUGAUGACUGCUA--UGUCC-UCGAUGCCC--UAAAGUGAAGCCGUG--------UUUACUUC-----------------------------------------------------C-----------------------------------------------GCCG-CGACC------------GCGU---CCGUUU--------CCGC--AUCUUG------AUACGC------------------------CUUGUCUUCGGACGA--------------------------------GCGUGU---GUCGG-GUG-UCUG--GGGCGGG---CAUCGGUCAAG---------GGAGUGGUGAUGAUCUUGACCUUG--------UCUUGAC--GUCG-GAC---UUCG---GUCG-----GUC-GGA-----------------------------------------------------C-UUGGUGGGUGUCGA-GGA--GGUCUGAAAGGU
AJ507113.1/1-287 -GUCG-AC-GU--ACU----UCAUAGGA-UCAUUUCUAUAGGAC-AC-GU-C-------CCU--UUGACUCUUUUAAAAAAGAGCCACUGUUUC---CAACUUGGUUGAUGAGGUAGA--UA-CC-CUUGUGCCC--AAGAGUGAGAAGUU----------------UACUAGUUUGUCCGGAU--------------------CCUUAGCGGUCUGGUCAU----CU--------------------------------AUCACUUUU---------U------------UGCCUUUAG----------------UUUGUGGGAGU-U-A-----------------------------------CUUG------------------------------------------UAACUCUCC-U---------------UAAAGGAG-----------------------CGAUGAUCUUGACCCUU--------UG--UUG--UGUACUCU---UUAG---GGAG-----GGACUCU-----------------------------------------------------U-AGGGUGGGUGCAAGAGGC--AGUCUGACAAGU
AJ507111.2/71-377 -AUAG-ACUAACACCUUCCAAAGUAGGA-UCAUUUCUAUAGUUU-AC-GU-CCC-----UCU--UUGACUCUU-CUA--AAGAGCCACUGAAUC---CAACUUGGUUGAUGAGCCGUA--UA-CC-UUUGUGCCC--UAGAGUGAGAAAUA----------------CAAUUUAGCUUGUCUAUAAC-------------CCUUAGCGGUUUAGUCAUCUAU----U---------------------------------UUAAUUUUG---------C------------CUUUUGUUAC--------------AAAGGAACUCGU-C-C-----------------------------------UUAU------------------------------------------GGACUUGAUGCCU------------UUAUAAAGGA---------------------GCGAUGAUCUUGACCCUG--------UUUA-----UGAACUUU---UUCG---GAAG----G-GAUAAA----------------------------------------------------UA-UGGGUGGGUGCAAAUGGC--AGUCUGACAAGU
EU526091.1/80-338 -ACCGCACUUU--ACA----GG--AGAA-UCAUUUCUAUAGUAU-UU-GUCCUC----UUUU--GUGUUCCC--UAA--AGGAGCCACAGAUCC---CACCGCGGUUGAUGAUCA--A--UAUCC-UCGGCGCCC--AACAGUGAGGUCCUUA-----UUUAC--UCUCGCUC------------------------------------------UGCCUGC-----------------------------------------AAAGGU---------G-------------GCG----------------------------GUCG-C-------------------------------------UUCAC----------------------------------------G-GCGAU------------------------UGU-AUAGA------------GAGUGGCGAUGAUCUGUACCCCGAU----UU-CCAGA---GGUCUGCC---UUCG---GGCG----C-UUUGG------------------------------------------------------C-GGGGUGGGUGUCGAUGGA--AGUCUGACGCG-
AJ507109.2/108-392 -UGCA-AC-------------AGUAGGA-UCAUUUCUAUAGUUU-AC-GU-CCC-----UCU--UUGACUCUU-CUA--AAGAGCCACUGAAUC---CAACUUGGUUGAUGAGAUAUA--UA-CC-UUUGUGCCC--UAGAGUGAGGUUUUUG------U-U-----UA---GCUUGUCCA-------------------------CAACUCUUUGC---------AGUUUGG----------------------UCAUCUACAAAUU----------U------------UGCCUUUUCU-------------UCA--UAAUUUGA-A-C-----------------------------------UUCG------------------------------------------GUUCAUGUU-A---U---------UUCAAAGGAG-----------------------CGAUGAUCUCGACCCAG----------UUUAU--G-UACUUC---UUCG---GAAG---GGAUAGACC-----------------------------------------------------U-UGGGUGGGCGCAAAUGGC--AGUCUGACAAGU
AACQ01000009.1/90506-90829 -GUCG-ACGUA--CUU----C-AUAGGA-UCAUUUCUAUAGGUC-AC-GU-CCC-----UCU--UUGACUCUU-CAA--AAGAGCCACUGAAUC---CAACUUGGUUGAUGAGUGAGA--UUACC-CUUAUACCC-UCAAAGUGAGAUAAUAAC----AU-G-----A----AAUUUUUUGCUUGACCGU-------GAUUCUUUGCAAUCUGGCCA---------UCUA----------------------------CUUAUAAUGUU---------U------------UGCCUUUAAC--------------UUUUUUUUUGAU-G-CUAACC------------------------UAGUC------AUAG--------------------------------GUGAUGCAUUUAAU-AU--U---------UCUAAAGGAG-----------------------CGAUGAUCUUUACCCUU--------UUCA----UUGUGCCUU---CUAG---GAGG----AUUUUGAA-----------------------------------------------------U-UGGGUGGGUAUAAGCGGC--UGUCUGACAAGU
AACI02000279.1/5254-5586 -UAAC-ACCUU--UUA----CAGUAGGA-UCAUUUCUAUAGGAA-UC-GU-CAC-----UCU--UUGACUCUU-CAA--AAGAGCCACUGAAUC---CAACUUGGUUGAUGAGUCCCA--UAACC-UUUGUACCC--CAGAGUGAGAAACUG-------A-A-----AUU--AAAUCUAAAUUAGCU--------------UGGUCCGCAAUCCUUA---------GCGGUUCGGCCAUCUA----UAAUUUUGAAUAAAAAUUUUGCU---------U------------UGCCGUUGCA--------------UUUGUGACUUCU-U-C----------------------------------CUUUG------------------------------------------GAAGUUGUC-ACU-A---------CUAAAUGGCG-----------------------CGAUGAUCUUGACCCAU--------CCUAU--GUACUUCCUU---UUUG---GAAG---GG--AUAGGGC------------------------------------------------UUUA-UGGGUGGGUACAAAUGGC--AGUCUGACAAGU
ABPO01000470.1/2611-2943 -UAAC-ACAUU--CAA----CAGUAGGA-UCAUUUCUAUAGGAA-UC-GU-CAC-----UCU--UUGACUCUU-CAA--AAGAGCCACUGAAUC---CAACUUGGUUGAUGAGCCCCA--UAACC-UUUGUACCC--UAGAGUGAGAAAUUG--------AA-----AUUA-AUCGAAAUUAGCUUGGUCCGCAAUCCUUAGCGGUUCGGCCAUCUA---------UAAUUUU---------------------UUAACAAAUUUUGCU---------U------------UGCCGUUGCA--------------UUUGUAAUCUCU-U-C----------------------------------CUCUG------------------------------------------GAAGCUUUU-ACG-AU-------CUUUAAUGGCG-----------------------CGAUGAUCUUGACCCAU--------CCUAU--GUACUUCCUU---UUUG---GAAG---GG--AUAGGGC------------------------------------------------UUCA-UGGGUGGGUACAAAUGGC--AGUCUGACAAGU
AABY01000172.1/20003-20336 -AACG--CAUU--CAA----CAGUAGGA-UCAUUUCUAUAGGAA-UC-GU-CAC-----UCU--UUGACUCUU-CAA--AAGAGCCACUGAAUC---CAACUUGGUUGAUGAGCCCCA--UAACC-UUUGUACCC--UAGAGUGAGGAAAUG-------A-A-----AUU--AAAUCUAAAUUAGCU--------------UGGUCCGCAAUCCUUA---------GCGGUUCGGCCAUCUA----UAAUUUUGAAUAAAAAUUUUGCU---------U------------UGCCGUUGCA--------------UUUGUAAUUUUU-U-C----------------------------------CUUUG------------------------------------------GAAGUUAUU-ACG-AU-------AUUUAAUGGCG-----------------------CGAUGAUCUUGACCCAU--------CCUAUGU--ACUUCCUU---UUUG---GAAG-----GGAUAGGAC------------------------------------------------UUCA-UGGGUGGGUACAAACGGC--AGUCUGACAAGU
ABJE01001085.1/27369-27637 -UAAU-CCCUU--CCU----CAGGAGAA-UCAUUUCUAUAGUAU-UC-GA-CCUA---CUCU--G-GGUUCU-CCAA--AAGAGCCACAGAUCC---CACCCUGGUUGAUGAUUG--A--UAUCC-UCGACACCC--UAGAGUGAAUGGCUCU-----GGUUGC-CCUCGCA---------------------------------------------CUGCCUGCA-------------------------------------AAGGUG---------G--------------CGGCUCUU--------------G----------C-C------------------------------------CUUCUC----------------------------------------G-GGU----------------------GAGCUG--UAUAAGA---------GGGCGUUUUAUGAUCUCGUCCCUG--------CUUCGCG--GUCUUGCC---CUUG---GGCG-----CGC-GGG-----------------------------------------------------C-GGGGUGGGUGUUGACGGA--CGUCUGACAGGC
AABX02000070.1/138290-138551 -ACCA-ACA-------------GGAGAA-UCAUUUCUAUAGUAU-UU-GU-CCUC---UUUU--GUGUUCCCU--AA--AGGAGCCACAGAUCC---CACCCGGGUUGAUGAACU--A--UAUCC-UCGUUUCCC--AACAGUGAGGUCCCUUUU--AUUUUAC-UCUCGCU---------------------------------------------CUGCC-UGA-------------------------------------AAAGGU---------G--------------GCGAUCU--------------------------U-G-C-----------------------------------UUCAC----------------------------------------UGCAU----------------------GAUUGU--AUAGA------------GAGUGGCGAUGAUCUGUACCCCGAU----UU--CCCAA--GGUCUGCC---UUCG---GGCG----CUUGGG-------------------------------------------------------C-GGGGUGGGUUUCGAUGGA--AGUCUGACCGGC
AATT01000185.1/15906-16168 -GUCG-AC-CA--ACU----CUUCAGGA-UCAUAUGUAGAGUUCGUU-GU-ACU-----AUA--CUAGCUUUUUCAA--AAGAGCUACACUUAA---CAACAUGGAUGAUGAGACGAA----GGA-CAACCACUC--AAGGG-GAA---GUG---------------------------------------------------------------------CAGGA------------------------------------CAUUUUG---------U------------GACAAUUGGG--------------GU-----UUUUU-U-C----------------------------------AUUUGA----------------------------------------AGAAGAU------------------GCUAAUUGUUCGAUUUG---------UCUUGGUUGAAGAC--UACUCCUGA-----UUGCUGGAC--U---UGCC---CUUG--UGGCA-----GUCUGGC-----------------------------------------------------C-AGGAAGGGUGGAUGGCCC--UGUCUGACAUGU
AATT01000185.1/2392-2654 -GUCG-AC-CA--ACU----CUUCAGGA-UCAUAUGUAGAGUUCGUU-GU-ACU-----AUA--CUAGCUUUUUCAA--AAGAGCUACACUUAA---CAACAUGGAUGAUGAGACGAA----GGA-CAACCACUC--AAGGG-GAA---GUG--------CA-----GG---------------------------------------------------AC-----------------------------------------AUUUUG---------UGACAAUUGGGGUUUUUUUCAUU--------------UGAAGAAGAUGC-U-A----------------------------------GUUGU------------------------------------------UCGAUUUGU-CUU-G---------GUUGAAGAC---------------------------------UACUCCUGA-----UUGCUGGAC--U---UGCC---CUUG--UGGCA-----GUCUGGC-----------------------------------------------------C-AGGAAGGGUGGAUGGCCC--UGUCUGACAUGU
AFQF01003453.1/39631-39905 -GUCG-ACAAU--ACU----UCAGAGAA-UCAUUUCUAUAGUAU-UC-GA-CCUU---CUCU---UGGUUCC-CUAA--AAGAGCCACAGAUCC---CACCCUGGUUGAUGAAUG-AA--UAUCC-UCGAUGCCC--UAGAGUGAAUACCCCUUU--UGGUCCUCUCGAUC----------------------------------------------UGUCCGCAA-------------------------------------GGAUGG---------------------------------------------------------C-G-GUGGU--------------------------UGCUCUUU-GAGU---------------------------------GGCCGCUGU------------------------------AUAGAGAGA-----UGUUACUCUUGAUGAUCUCGGCCCCC--------AGAGCG----GUCUGCC---CUCG---GGCG------CGCUUU-----------------------------------------------------U-GGGGCGGGCAUUGAUGGA--CGUCUGACAGGC
ABDG02000022.1/919092-919362 -AACA-ACUUC--AA-----CAGGAGAA-UCAUUUCUAUAGUAU-UU-GU-CUCU---UGCU--UUGGUUCC--CAA--AAGAGCCAUCGAAUC---CACCCUGGUUGAUGAUUG-CA--UAUCC-UCGAUACCC--AAGAGUGAAUUUUCUG------GUC----C-----------------------------------------------------U---------------------------------------------------------C------------UCGCUCUGUCCG---------CAAGGAUGGCGGCAGUAGC----------------------------------CUCGU------------------------------------------G-CUUCUGC-UGU-A---------UAGAGAGCUGUUUU--------------CUUCUUGAUGAUCUCGACCCUA--------UCCGUG---GUCAUGCC---UUCG---GGCG------CACUGG-----------------------------------------------------U-AGGGUGGGUGUCGAUGGA--CGUCUGACAGGC
AE016816.3/565015-565319 -ACCG-ACG-U--ACU----UCAUAGGA-UCAUUUCUAUAGGAA-UC-GU-CAC-----UCU--UUGACUCUU-CAA--AAGAGCCACUGAAUC---CAACUUGGUUGAUGAGCAUCA--GAGCC-UCUGCACCC--CAGAGUGAG---------------------AACAAAGAUUGUUU-------------------------UAGCUUGGCCAUAAUCCUUAGCGGUUUGGC----------------CAUCUGCAACCUUUGCU---------A------------UGCCUUUGCAA-----------UCAGU--CGCAACC-G-G------------------------------------CUU-----------------------------------------GCCGGCGGCG-CAG-C----------UAAAAGGCG-----------------------CGAUGAUCUUGGCCCGC-------------UCUGUGCACUUC---UUCG--UGAAG----GGACAGUU-----------------------------------------------------G-CGGGUGGGAGCAGAUGGC--AGUCUGACAAGU
AAIL02000034.1/934416-934691 -AACA-ACCUU--UUG----CAGGAGAA-UCAUUUCUAUAGUAU-UC-GU-CUC-----UCGCUUUGGUUCC--CAA--AAGAGCCAUCGAAUC---CACCCUGGUUGAUGAUUG-UA--CAUCC-UCGAUACCC--AAGAGUGAAUACUUU--------UU----U-G--------------------------------------------------GUCC----------------------------------------------U-------CU------------CGCUCUGUCCGC---------AAGGACGGCGGCGGU-U-G----------------------------------CUCUUU----------------------------------------GUGGCUUCCG-CUG-U-----------AUAGAGAGUUGUU-------------UCUCUUGAUGAUCUCGACCCUG--------CCGGU---UCUUUUGUC---UUCG---GGCA----U--GCUGG-----------------------------------------------------U-AGGGUGGGUGUCGAUGGA--CGUCUGACAGGC
ABDF02000091.1/852020-852294 -ACAA-ACCGC--CCU---ACAGGAGAA-UCAUUUCUAUAGUAU-UC-GU-CUCU---UGCU--UUGGUUCC--CAA--AAGAGCCAUCGAAUC---CACCCUGGUUGAUGAUUG-UA--UAUCC-UCGAUGCCC--AAGAGUGAAUUUUUA--------UG-----GUCCUCUC--------------------------------------GCCC-------UGUCCGCA-----------------------AGGAUGGC-----------------------------------GGC-------------A-GUUGCCUUUGU-G-C----------------------------------UUCUGC----------------------------------------UGUAUAGAG-----AGU------UGUUU-------UUU----------------CUCUUGAUGAUCUCGACCCUG--------CCGGUG----GUCUGCC---UUCG---GGCG------CGCUGG-----------------------------------------------------U-AGGGUGGGUGUCGAUGGA--CGUCUGACAGGC
#=GC SS_cons .:::<.<<<<<..<<<....--<<<<<<.____>>>>>>>>>>>.>-.>>.>,,.....<<<..-<<<<<<<<.___..>>>>>>>>->>>---...---((((--------------..--(((.(((((((((..,,<<<----------........--.....----..............................................------..-....................................-------.........-............<-<<<<<<--..............--<<<<<<--<<.<.<..................................______........................................_>>>>-->>>.>>>.-.........-->>>>>>->.......................------->>>,<<<<<<........<<<<<<<..----<<<<...____...>>>>....->>>>>>>.....................................................>.>>>>>)))))))))-)))..-------)))):
#=GC RF_cons .gucg.ACauu..ccu....caauAGgA.UCAUUuCUauaggaa.uC.GU.ccC.....ucu..uUGgcucuU.CAA..AagagcCACagaAuC...CAACuuGGUUGAUGAgucauA..UAgCC.ucuguaCCC..uAgAGUGAGaacuUu........uu.....auua..............................................uaauCc..A....................................uuuuuuU.........u............cgccuuuuuc..............uuuggcccuUcc.u.c..................................uUUuua........................................ggagguuggg.cca.a.........uuaaaaggcg.......................CGAUGAUCUcuaCCCau........cccggcc..uuuucgcC...UUcG...Ggcg....uggccggg.....................................................a.uGGGuGGGuacagaUGGc..aGUCUGACaaGU
//