U3b¶
Processed from a transcript (as CNAG_13174)
U3b_boxCDsnoRNA-251nt.
Sequence is nearly identical to that of the other U3-like snoRNA, snR45-U13/U3 on chromosome 3.
The homologue from Naematelia encephala (URS0000D98D81_71784 ) is assigned by Rfam as the small nucleolar RNA U3 (Rfam RF00012).
Orthologue of yeast U3a or U3b, snR17a or snR17b, human SNORD3@.
In Tremellomycetes the conserved 5’ stemloop comprising
boxes A'/Aappears to be shorter than in baker’s yeast, although in Cryptococcus species a similarlly sized 5’ stemloop can be formed (see also U3 or snR45).In a number of Tremellomycetes, like in in baker’s yeast, an intron separates the conserved
A' boxfrom the downstream section withA-box-like elements.U3 sequences in the 5’ 70 nt leader have predicted targets in 18S rRNA: tgatcctg[cc]agtagtc, like in S. cerevisiae (18S target 1a, and target 1b) where they are part of a pseudo-knot (for an overview see [Marmier-Gourrier-2011]). In baker’s yeast another 18S rRNA target, aggaa, and interaction sites in the ETS1, ggatttggtgg and Tcaaagagtg, have been described. Different ETS1 sequences might mediate comparable basepairing with U3 in Cryptococcus: gtggaaggtg and gtgaggaagaa. In contrast, the interaction with 18S rRNA sequence aggaa seems not well-supported because of reduced complementarity within the
box AU3-element in Cryptococcus. Whether these interactions occur in more distant Tremellomycetes is not obvious.In baker’s yeast, apart from U3, snoRNAs snR4 and snR45 contain a leader sequence with base-pairing functionality; these snoRNAs guide the conserved acetylase Kre33/NAT10 to two different cytosines in 18S rRNA, while Kre33/NAT10 also modify a group of tRNAs [Sharma-2017].
All above U3 interaction sites in 18S rRNA differ from those for snR4 or snR45 around the acetylated C residues.
If the same C-residue targeted by snR45 in baker’s yeast is acetylated in Cryptococcus, functions of U3 and snR45 might be mixed in Tremellomycetes (see snR45-U13_U3a).
Alignments:
U3 homologues in Tremellomycetes, identical to snR45-U13/U3-homologues¶
Putative secondary structures (drawn with R2R); model for Rfam RF00012 is in the inset on the left:
Tremellomycetes U3 Close homologues of S. cerevisiae U3
The comparative yeast U3 model (RF01846) has been published in 2010 by Marz and Stadler.
Helix-formation by association of C/D and C’/D’ motifs has not been incorporated in these models (in contrast to the models for snR45/U3 and U13).
>AE017348.1:892818-893068 Cryptococcus neoformans var. neoformans JEC21 chromosome 8 sequence ATCGACCTTACTCTGCAGGATCTCTGTATAGTAATCGTTCTTTTTTGCTAGTCCACACTAGCCACATTTT CCACGTCGAGGGGATGATCTAGTTACCCGCTCCGCTCTCTCACAGAGGCATTTAGCCATCGGTCCTCTCT TTCGAGTGAGGTTCCGAGAGGTTATCGAAGAAGCTGGCGGTCGCATACCTGCCAACCCTCCGGGGAAGGT ATGGGAGCGACCGTGGGCTGGAGCGGGCTTTCTGATCGACG
Image source U3:
# STOCKHO#=GS SNORD3@/1-216 DE Homo_sapiens SNORD3@ http://snoopy.med.miyazaki-u.ac.jp/snorna_db.cgi?mode=sno_info&id=Homo_sapiens300250LM 1.0
#=GF RW van Nues, May 2023, Aug 2024, July 2025
#=GF https://coalispr.codeberg.page/paper
#=GF ALignment with upstream, intronic and downstream sequences
#=GS SNORD3@/1-216 DE Homo_sapiens SNORD3@ http://snoopy.med.miyazaki-u.ac.jp/snorna_db.cgi?mode=sno_info&id=Homo_sapiens300250
SNORD3@/1-216 ------------------------------AAGAC-TATACTTTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGGAT-CATTTCTATAGTGTGTT--ACTAGAGAAGTTTCTCTGAACG--------------------TGTAGAGCACCG------AAAACCCCGAGGAAGAGAGGTAGCGTTTTCTCCTGAGCGTGAAGCCGGCTTTCTGGCGTTGCTTGGCTGCAACTGCCGTCAGCCAT-------------------------------------------------------------------TGATGATCGTTCTTCTCTCCGTATT---------------------GGGGAGTGAGAGGGAGAGAAC-GCGGTCTGAGTGG-----------------------------
#=GS SNR17A/1-490 DE YNCO0025W SGDID:S000007294, Chromosome XV:780107..780596
SNR17A/1-490 -----------------------------GTCGAC--GTACTTCA-----GTATGTAATATACCCCAAACATTTTACCCACAAAAAACCAGGATTTGAAAACTATAGCATCTAAAAGTCTTAGGTACTAGAGTTTTCATTTCGGAGCAGGCTTTTTGAAAAATTTAATTCAACCATTGCAG-------------------------------------------------------------------------CAGCTTTTGACTAACACATTCTA------------------------CAGTAGGAT-CATTTCTATAGGAATCGTCACTCTTTGACTCTTCAAAAGAGCCACTGAATCCAACTTGG-TTGATGAGTCCCATAACCTTTGTACCCCAGAGTGAGAAACCGAAATTGAATCTAAATTAGCTTGGTCCGCAATCCTTAGCGGTTCGGCCATCTATAATTTTGAATAAAAATTTTGCTTTGCCGTTGCATTTGTAGTTTTTTCCTTTGGAAGTAATTACAATATTTTATGGCGCGATGATCTTGACCCATCCTATGTACTTCTTTTTTGAAGGGATAGGGCTCTATGGGTGGGTACAAATGGCAGTCTGACAAGT---------------------------
#=GS SNR17B/1-462 DE YNCP0005C SGDID:S000007441, Chromosome XVI:281056..281517
SNR17B/1-462 -----------------------------GTCGAC--GTACTTCA-----GTATGTTTTATACCATATACTTTATTAGGAATATAACAAAGCATACCCAATAATTAGGCAATGCGATTGTCGTATTCAACAACCATCTTCTATTTCACCAGCTT----------------------------------------------------------------------------------------------------CAGGTTTTGACTAACACATTCAA------------------------CAGTAGGAT-CATTTCTATAGGAATCGTCACTCTTTGACTCTTCAAAAGAGCCACTGAATCCAACTTGG-TTGATGAGCCCCATAACCTTTGTACCCCAGAGTGAGGAAATGAAATCGAATTTAAATTAGCTTGGTCCGCAATCCTTAGCGGTTCGGCCATCTATAATTTTGAATAAA-ATTTTGCTTTGCCGTTGCAATTGTGATAACTTCCTTTGGAATTTGTTGCGATATTTAATGGCGCGATGATCTTGACCCATCCTATGTGCTTCCATTTTGGAAGGATAGGGATTCATGGGTGGGTACAAATGGCAGTCTGACAAGT---------------------------
Annot-SacCer/1-45 --------------------------------CUG---AUGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GUCCUA-GUAAGGA--------------------------------UUGGU----------------RTGATGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------CGATGA-------------------------------------------------------------------CTGA------------------
Annot/1-35 --------------------------------CUG---AUGA----GUC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CUA----------------------------------------UUGGU----------------RTGATGA---------------------------------------------------------------------------------------------------------------------------CGATGA-----------------------------------------------------------------------------------------------------------------------CTGA----------------------
#=GS U3b/1-251 DE ncrna 8:892817:893129:1 (as Rfam URS0000D98D81_71784; Tremella encephala Small nucleolar RNA U3
U3b/1-251 -----------------------------ATCGAC-CTTACTCT-GCAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAT-CTCTGTATAGTAATCGT-TCTTTTTTGCTAGTCCACACTAGCCACATTTTCCACGTCGAGGGGATGATCTAGTT----ACCC-GCTCC--GCTCTCTCACAGAGG---CATTTAG-CC-A---TCGG-T---CCTC--T-----CT-TTCG-AG-----T--GAGG-TT---CCGA--GA-GG--TTA-TCGAAGAAGCTGGCGGT-------CGC-ATA--CCTG------CCAA---C--CC-TCCG-GGG---AA--GG---TA-TGGG--A-GCG-------ACCGT--GGGC--T-GGAGCG-GG-CTTTCTGATCGACG----------------
#=GS CNAG_13174/1-251 DE CP003833.2:c302983-302691 Cryptococcus neoformans var. grubii H99 chromosome 14, complete sequence
CNAG_13174/1-251 -----------------------------ATCGAC-CTTACTCT-GCAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAT-CTCTGTATAGTAATCGT-TCTTTTTTGCTAGTCCACACTAGCCACATTTTCCACGTCGAGGGGATGATCTAGTT----ACCC-GCTCC--GCTCTCTTACAGAGG---CATTTAG-CC-A---TCGG-T---CCTCT-------CT-TTCG-AG-------GGAGG-TT---CCGA--GA-GG--TTA-TCGAAGAAGCTGGCGGT-------CGC-ATA--CCTG------CCAA---C--CC-TCCG-GGG---AA--GG---TA-TGGA--A-GCG-------ACCGT--GGGC--T-GGAGCG-GG-CTTTCTGATCGACG----------------
#=GS R265_10/1-274 DE NC_088594.1:608060-608333 Cryptococcus decagattii chromosome 10, complete sequence
R265_10/1-274 ------------------TTCTTTTCTTCATCGAC-CTTACTCT-GCAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAT-CTCTGTATAGTAATCGT-TCTTTTTTGCTAGTCCACACTAGCCACATTTTCCACGTCGAGGGGATGATTTAGTT----ACCC-GCTCC--GCTCTTTCACAGAGG---CATTTAG-CC-A---TCGG-T---CCTCT-------CT-TTCG-AG-------GGAGG-TT---CCGG--CA-GG--TTA-TCGAAGAAGCTGGCGGT-------CGC-ATA--CCTG------CCAA---C--CT-TCC--GGG---AA--GG---TA-TGGG--A-GCA-------ACCGT--GGGC--T-GGAGCG-GG-CTTTCTGATCGACGTTCATTCGGTTCC---
#=GS IND107_11/1-273 DE NC_089951.1:c213666-213394 Cryptococcus tetragattii IND107 chromosome 11, whole genome shotgun sequence
IND107_11/1-273 -------------------TCTTTTCTTCATCGAC-CTTACTCT-GCAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAT-CTCTGTATAGTAATCGT-TCTTTTTTGCTAGTCCACACTAGCCACATTTTCCACGTCGAGGGGATGATTTAGTT----ACCC-GCTCC--GCTCTTTCACAGAGG---CATTTAG-CC-A---TCGG-T---CCTCT-------CT-TTCG-AG-------GGAGG-TT---CCGG--GA-GG--TTA-TCGAAGAAGCTGGCGGT-------TGC-ATA--CCTG------CCAA---C--CT-TCCG-GGG---AA--GG---TA-GGGG--A-GCA-------ACCGT--GGGC--C-GGAGCG-GG-CTTTCTGATCGACGTTTATTCGGTTC----
#=GS WM276_L/1-251 DE CP000297.1:c212431-212136 Cryptococcus gattii WM276 chromosome L, complete sequence
WM276_L/1-251 -----------------------------ATCGAC-CTTACTCT-GCAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAT-CTCTGTATAGTAATCGT-TCTTTTTTGCTAGTCCACACTAGCCACATTTTCCACGTCGAGGGGATGATTTAGTT----ACCC-GCTCC--GCTCTTTCACAGAGA---CATTTAG-CC-A---TCGG-T---CCTCT-------CT-TTCG-AG-------AGAGG-TT---CCGG--GA-GG--TTA-TCGAAGAAGCTGGCGGT-----C--GC-ATA--CCTG------CCAA---C--CT-TCCG-GGG---AA--GG---TA-TGGG--A-GCA-------ACCGT--GGGC--C-GGAGCG-GG-CTTTCTGATTGACG----------------
#=GS U3a_snR45-U13/1-253 DE AE017343.1:c1423686-1423428 Cryptococcus neoformans var. neoformans JEC21 chromosome 3 sequence
U3a_snR45-U13/1-253 -----------------------------ATCGAC-CTTACTCT-GCAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAT-CTCTGTATAGTAATCGT-TCTTTTTTGCTAGTCCACACTAGCCACATTTTCCACGTCGAGGGGATGATCTAGTC----ACCC-GCTTC--GCTCTTTCACAGAGG---CATTTAG-CC-G---TCGG-T---CCTCT-------CT-TTCG-AG-------AGAGG-TT---CCGG--GA-GG--TTA-TCGAAGAAGCTGGCGGTAT--GG---T---A---CCA---GTTTTGA---C--CT-CTTG-GGG-------AAAGCT--TGG---G-A----G--ATACCGT--GGGC--T-GGAGCG-GG-CTTTCTGATCGACG----------------
#=GS CNAG_12256/1-251 DE CP003822.1:606650-606905 Cryptococcus neoformans var. grubii H99 chromosome 3, complete sequence
CNAG_12256/1-251 -----------------------------ATCGAC-CTTACTCT-GCAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAT-CTCTGTATAGTAATCGT-TCTTTTTTGCTAGTCCACACTAGCCACATTTTCCACGTCGAGGGGATGATCTAGTC----ACCC-GCTTC--GCTCTTTCACAGAGG---CATTTAG-CC-G---TCGG-T---CCTCT-------CT-TTCG-GG-------AGAGG-TT---CCGG--GA-GG--TTA-TCGAAGAAGCTGGCGGTAT--GG---T---A---CCA-----GCTGA---C--CT-TTCG-GGG---AA--GGC--T--TGG---G-A----G--ATGCCGT--GGGC--T-GGAGCG-GG-CTTTCTGATCGACG----------------
#=GS R265_2/1-281 DE NC_088586.1:573160-573440 Cryptococcus decagattii chromosome 2, complete sequence
R265_2/1-281 ---------------TTTTCCTTTTCTTCATCGAC-CTTACTCT-GCAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAT-CTCTGTATAGTAATCGT-TCTTTTTTGCTAGTCCACACTAGCCACATTTTCCACGTCGAGGGGATGATCTAGTC----ACCC-GCTTC--GCTCTTTCACAGAGG---CATTTAG-CC-G---TCGG-T---CCTCT-------CT-TTCG-GG-------GGAGG-TT---CCGG--GA-GG--TTA-TCGAAGAAGCTGGCGGTAT--GG---T---A--CCAA------CTGG---C--CC-TTTG-GGG---AA--AG---C--TTGG--G-A----G--ATGCCGT--GGGC--A-GGAGCG-GG-CTTTCTGATCGACGTTTCAACAAATTTCGA
#=GS WM276_C/1-277 DE NC_014940.1:c1379289-1379013 Cryptococcus gattii WM276 chromosome C, complete sequence
WM276_C/1-277 ---------------TTTTCCTTTTCTTCATCGAC-CTTACTCT-GCAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAT-CTCTGTATAGTAATCGT-TCTTTTTTGCTAGTCCACACTAGCCACATTTTCCACGTCGAGGGGATGATCTAGTC----ACCC-GCTTC--GCTCTTTCACAGAGG---CATTTAG-CC-G---TCGG-T---CCTCT-------CT-TTCG-GG-------GGAGG-TT---CCGG--GA-GG--TTA-TCGAAGAAGCTGGCGGTAT--GG---T---A--CCAA------CTGG---C--CC-TTTG-GGG---AA--AG---C--TTGG--G-A----G--ATACCGT--GGGC--A-GGAGCG-GG-CTTTCTGATCGACGTTCCAACAAATT----
#=GS CA1280_3/1-273 DE NC_089930.1:c1354976-1354704 Cryptococcus bacillisporus CA1280 chromosome 3, complete sequence
CA1280_3/1-273 -------------------CCTTTTCTTCATCGAC-CTTACTCT-GCAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAT-CTCTGTATAGTAATCGT-TCTTTTTTGCTAGTCCACACTAGCCACATTTTCCACGTCGAGGAGATGATTTAGTT----ACCC-GCTCC--GCTCTTTCACAGAGG---CATTTAG-CC-A---TCGG-T---CCTCT-------CT-TTCG-AG-------GGAGG-TT---CCGG--CA-GG--TTA-TCGAAGAAGCTGGCGGTAT--GG---T---A--CCAA------CTGG---C--CC-TTTG-GGG---AA--AG---C--TTGG--G-A----G--ATACCGT--GGGC--A-GGAGCG-GG-CTTTCTGATCGACGTTCAAACAAATT----
#=GS CryDep/1-278 DE NC_089474.1:c556829-556552 Cryptococcus depauperatus CBS 7841 chromosome 7, complete sequence
CryDep/1-278 ---------------CTTTTCTTTTCTTTATCGAA-CATACTCT-GCAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAT-CTCTGTATAGTAACTGT-TCTTCTTTGCTAGTCCACACTAGCCACATTTTCCACGTCGAGGGGATGATTCAGTC----ACCT-GCTCC--GCTCTTTTACAGAGA---CATTTGG-TC-G---CTGG-T----CTAC------TCT-TTTC-GGA------GTAG--TA---CCAG--GA-GG--CTA-TCGAAGAAGCTGGCGGC------TTGT-ATG--CCTG------CCAA---C--CT-TTAC-GGG---AA--GG---C--TGGG--A-ACAA-------CCGT--GGGC--T-GGGGCA-GG-CTTTCTGATCGACGTTTTACATTGTTT---
#=GS CryWin/1-256 DE CP034262.1:307141-307399 Cryptococcus wingfieldii strain CBS7118 chromosome 2, complete sequence
CryWin/1-256 -----------------------------ATCGAC-CTTACTCT-GCAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAT-CTCTGTATAGTAATTGT-TCTTTTTCGCTAGTCCACACTAGCCACATTTTCCACGTCGAGGGGATGATCAAGTT----ACCC-GCCCC--GCTCTTTCACAGAGG---CATTTAG-CC-A-CCGACA------CTTCC-----GGC-TTCG-GTC----A-GTAG--C----TGTTGGGA-GG--TTA-TCGAAGACGCTGGCGGT----A--CGT-ATA---CC-----GACTGA---T--CC-TTC--GGG---AAA-GGTC-T---GG---GAACG-------GCCGT--GGGC--T-GGGGCG-GG-CTTTCTGATCGACG----------------
#=GS KwoShan/4-421 DE NQVO01000013.1:c301038-300621 Kwoniella shandongensis strain CBS 12478 scaffold00013, whole genome shotgun sequence
KwoShan/4-421 -------------TTTTCTCTTTCTCCTCAATGAT-CATACTTT-GCAG-GTTAGTCGAGTACTACATTTGCTCCTTCCCCTCCCACTCTACCG--------------------------------------------------------------------------------------------------------CTCTTTCGAGCTCTCTTCCCGCCTTCTCGTCGCCTTCTCCTGGCTCTCCCCTTTGTGACGGCTTCGCTGACATGGATTCTCCCACTCTCA-------------CAG---GATT-TCTGTATAGTCACTGT-TCTTCTTTGCTAGTCTACACTAGCCACATTTTCCACGTCGAGGTGATGATCCAGTC----ACCC-GCCCC--GCTCTCTCACAGAGG---CATTTAG-CC-G-TCAGTC------AAAG----TCTCT-CTCG-GGAGG--T-CTTT-------GATTGGGA-GG--TTA-TCGAAGAAGCTGGCGGT----A--CGC-GGA--CCCG------TCGA---C--CT-TTCG-AGG---AA--GA------TGGG--GGGCG-------GCCGT--GGGC--T-GGGGCA-GG-CTTTCTGATCGACGTTCTTTCT--------
#=GS KwoNew/1-417 DE NC_089956.1:c812804-812390 Kwoniella newhampshirensis strain CBS 13917 chromosome 2, whole genome shotgun sequence
KwoNew/1-417 --------------------TCTCTTCTCATTGAT-CATACTTT-GCAG-GTTAGTTGCATACTACCTTTTCTCCCCTCACTATTCTCTCTTCA---------------------------------------------------------------------------------------------------------------------CTCCCAACGAGCTCTTTGCACTCTTCCCATCGTCCGCTTTCCTTTTCCTGCTGCTGAGCGGTCTCGCTGACTTGATTTCTATCAATCTCACAG---GATT-TCTGTATAGTCACTGT-TCTTCTTTGCTAGTCCACACTAGCCACATTTTCCACGTCGAGGTGATGATCCAGTC----ACCC-GCCCC--GCTCTCTTACAGAGG---AATTTAA-CC-G-TCAATC-------GAG-T-GGGTCT-CTCG-GGATTT-T-CTC---TC---GGTTGGGA-GG--TTA-TCGAAGAAGCTGGCGGT----A--CGC-GGA--CCTG------TCGA---C--CT-TTCG-AGG---AA--GA------TGGG--GGGCG-------GCCGT--GGGC--T-GGGGTA-GG-CTTTCTGATCGACGTTCTTACTTTC-----
#=GS KwoHev/3-417 DE ASQC01000169.1:c7554-7140 Kwoniella heveanensis CBS 569 cont2.169, whole genome shotgun sequence
KwoHev/3-417 ------------------TTCTTCTTCATGATGAT-CATACTTT-GCAG-GTAGGTATCAGCTACGTTTCCTCCCTTCTCTCGCATATTCCAG--------------------------------------------------------------------------------------------------------------CTCTCCTTGCATTCGCCATCGCTTCTCTCGAGCTGTCTTCGCCATCTTGGAAAAACCGTCGCTGACAAGGGTTTTTTTTTTTTTCCGCTTCTG-----CAG---GATT-TCTGTATAGTCACTGTCTCTTCTTTGCTAGTCCAAACTAGCCACATTTATCACGTCGAGGTGATGATAAAGT-----ACCC-GCTCC--GCTCTTTCACAGAGG--AAAT-TAG-CC-G---TTGC-C----CATT-----CCTT-TTAC-GGGG-----AATG--A----GCAA--GA-GG-TCTA-TCGAAGAAGCTGGCGGTC---T--CGC-GGA--CTCT---GTCCT----TC--CA-CTTG-TGGA------AGGAT-G-AGGG----GCG------GATCGT--GGGC--T-GGGGCGAGG-CTTTCTGATCGACGTCCTTC----------
#=GS KwoEur_2/1-424 DE NC_089488.1:c2929097-2928674 Kwoniella europaea PYCC6329 chromosome 2, complete sequence
KwoEur_2/1-424 ---------------TTTTTTTTTTCTTCATTGAT-CATACTTT-GCAG-GTAGGTTACCCCCTATATTTCTCTCTCTTTTCAGTTCAAATCCG---------------------------------------------------------------------------------------------------CTCTTTTCACCATCCCAACCGTCTTTTCCACAACTCTTCTACCGTATCTGCGAAAATTG-----CGGTCAGCTGACTTGGATTTTCAC--GATTTT------------TAG---GATT-TCTGTATAGTCACTGTCTCTTTTTTGCTAGTCCATACTAGCCACATTTTCCACGTCGAGGTGATGATAAAGTT----ACCC-ATCCG--GCTCTTTCACAGAGA---CATTTAG-CC-G---CTTC-C------CT---TTCTCT-CTCG-GGAGAA-T-AG---------GAAG--GA-GG--TTA-TCGAAGAAGCTGGCGATTC--A--CGT-GGA--CTC--A-TCTTT----AT--CC-CTTGTGGAT--TTC-GAAGA----GGG----ACG-----GAATCGT--GGGT--T-TGGATGTGG-CTTTCTGATCGACGCTTATCAATTT-----
#=GS KwoPin_2/1-421 DE NC_091716.1:c835850-835430 Kwoniella pini CBS 10737 chromosome 1, complete sequence
KwoPin_2/1-421 --------TGTTTCTTTTTTCTTTTTTCCATTGAT-CATACTTT-GCAG-GTAAGCCTACTACTACGTTTTCCTCCTTCTTCA---------------------------------------------------------------------------------------------------------------AGAGTGTCTTTTGCATCCTTTCCATCGCGATTCACCTTCCCCGTTGGCTGTTATTGGAAGAGCGAATTTGCTGACTTT-ATTTCTTTGGTATTTT------------TAG---GATT-TCTGTATAGTCACTGTCTCTTTTTTGCTAGTCCATACTAGCCACATTTTCCAAGTCGAGGTGATGAAAAAGTT----ACCC-ATCCT--ACTCTTTCACAGAGA---CATTTAA-CC-A---CTT--TT----TCTCT---TTAC-TTCG-GTAA---T-GGA---TTT---AGG---A-GG--TTA-TCGAAGAAGCTGGCGATTTC-T--CGT-GGA--CTC--A-TCTTT-----T--TC-TTCG-GAA---TTA-GAAGA----GGG----ACG----GAAATTGT--GGGT--T-TGGATGAGG-CTTTCTGATCGACTTCCTTCT---------
#=GS KwoDej/5-424 DE ASCJ01000004.1:1656586-1657005 Kwoniella dejecticola CBS 10117 cont1.4, whole genome shotgun sequence
KwoDej/5-424 ---------------TTTTTTCTTTCTTCATTGAT-CATACTTT-GCAG-GTTGGTCCCATATTCCTTGTTTTTCTCGCTCATCTCA-------------------CTC--------------------------------------------------------------------------------CCAATCTCCTTCTCTTCACTCTCAATCGCTTTCTCGCGACCTCTCCCATCGTTT-CAATCGAAAGAGCGAG--TGCTGATTCCGACTTTTTGGGAACTTG------------CAG---GATT-TCTGTATAGTCACTGTCTCTTTTTTGCTAGTCCATACTAGCCACATTTTCCACGTCGAGGTGATGATAAAGTT----ACCC-ATCCT--ACTCTTTCACAGAGA---CATTTAG-CC-C---TCT-------GACC-----CGGC-CTCG-GCTG-----GGTT--TT----GGG---A-GG--TTA-TCGAAGAAGCTGGCGATTTC-A--CGT-GGA--CTC--A-TCTTT-----T--TC-GTAA-GAA---TCA-GAAGA----GGG----ACG----GAAATTGT--GGGT--C-TGGATGAGG-CTTTCTGATCGACGCTTCTAT---------
#=GS KwoDen_1/1-433 DE NC_089476.1:c2909984-2909552 Kwoniella dendrophila CBS 6074 chromosome 1, complete sequence
KwoDen_1/1-433 ---TTTTAGTTTCTTTTTTTTCTTTCTTCATTGAT-CATACTTT-GCAG-GTAGGTCCCCCTATACTATCGTTTTCTCCTCCATTTCACTATTCAAACATCCTTTTCCA---------------------------------------------------------------------------------------------------TCTTCGCAATCGCATTCTCGTAACAATTTCTGCCAAATTAACCCAAAACGTGAACGCTAATTTCGAATTCTCCAACTTTAA------------TAG---GATT-TCTGTATAGTCACTGTCTCTTTTTTGCTAGTCCATACTAGCCACATTTTCCACGTCGAGGTGATGATAAAGTT----ACCC-ATCCT--ACTCTTTCACAGAGG---AATTTAA-CC-G-TTTTTC-C-----A---A----TCT-TTCG-GGA----A---T--------GAAAAAGA-GG--TTA-TCGAAGAAGCTGGCGATTC--T--CGT-GGA--CTC--A--TTTT----AA--TC-TTCG-GATT--AA--GAAG-A---GGG----ACG-----GAATTGT--GGGT--T-TGGATGAGG-CTTTCTGATCGACGTTCTACT---------
#=GS KwoShi_1/1-432 DE NC_085908.1:c2674163-2673732 Kwoniella shivajii chromosome 1, complete sequence
KwoShi_1/1-432 -----------TTAAGTTTTTCTTTTTCCATTGAT-CATACTTT-GCAG-GCAAGTCTACCCCTACGTTTTCGCCTTTCCCGCCTGCGTTTCGCTCCCATTCTACTTTC--------------------------------------------------------------------------------CACATGTCTTCTCTACACTCTCCCCATGCTTGGTTCGAAAGACT-------------------------CGGTCGCTGACTTGCAAATTTT-GGGATTTT------------TAG---GATT-TCTGTATAGTCACTGTCTCTTTTTTGCTAGTCCAAACTAGCCACATTTTCCACGTCGAGGTGATGATAAATAT----ACCC-ATCCG--ACTCTTTCACAGAGA---CATTTAA-CC-G-TCTTTTTC---CTTCTTT-----CC-CTCG-GG-----TTAGAGG----AAAAAGG-GA-GG--TTA-TCGAAGAAGCTGGCGGTTC--T--CGT-GGA--CTC--A---TTCTT--TT--CT-TTCG-AGAA--TT--GAA--AGA-GGG----ACG-----GAATCGT--GGGT--A-CGGATGCGG-CTTTCTGATCGACGTTTCCATTC-------
#=GS KwoBes_2/1-415 DE NC_089242.1:c2900229-2899815 Kwoniella bestiolae CBS 10118 chromosome 2, complete sequence
KwoBes_2/1-415 --TTTATTGTTTTTTCTTTTTTTTTCTTCATTGAT-CATACTTT-GCAG-GTGGGTCCCCTTATACGTTTTTGACTCTTCTCA-----------------------------------------------------------------------------------------------------------------------------CCCTCCCCATCGTCTTCTCTACACCTTCTTTATCTTCTTTGCGAAAATTGCAGTCGCTGACTTCGATTTCTTCGATTTTTA------------CAG---GATT-TCTGTATAGTCACTGTCTCTTTTTTGCTAGTCCATACTAGCCACATTTTCCACGTCGAGGTGATGATAAAGTT----ACCC-ATCCT--ACTCTTTCACAGAGA---CATTTAG-CC-G-TTTCC--TG-----TC-T--TCTCC-CTCG-GGGGA--TC-GG--------GAAGG--A-GG--TTA-TCGAAGAAGCTGGCGA----TTCTCGT-GGA--CTC--A--TCTCTT---T--CC-TTTT-GGA---TC--GAGA-AGA-GGG----ACGGTC-----TCGT--GGGT--T-TGGATGTGG-CTTTCTGATCGACGCTTCCTC---------
#=GS KwoMan_1/1-425 DE NW_027062534.1:c3535330-3534906 Kwoniella mangroviensis CBS 8507 chromosome 1 map unlocalized Ctg02, whole genome shotgun sequence
KwoMan_1/1-425 ------TCCCTTTTCTCTTTTTCTTTTTCATCGACG-ATACTTTTGCAG-GCGAGTACCCCCTACCATCCTTGTCCATGGCTGATCTCACCTCCCA--------------------------------------------------------------------------------------------------------TCTTCTCTCTCTTTTCGTCTCTTCGCTCTCCCGCTCCTCTTGTCGAAAGAA-----CGGGTTCGCTGACTTTATCTGTTT-GGCATATA------------CAG---GATT-TCTGTATAGTTACTGTCTCTTTTTTGCTAGTCCATACTAGCCACATTTTCCACGTCGAGGTGATGATAAAGTT----ACCC-ATCCT--ACTCTTTCACAGAGA---CATTTAG-CC-G--CTTC--C-----CT--T--TCTCT-TTCG-GGAGA--TT--AG-------GAAG--GA-GG--TTA-TCGAAGAAGCTGGCGATTC--A--CGT-GGA--CTC--A-TCTTT----AT--CC-CTCGTGGAT--TTA-GAAGA----GGG----ACG-----GAATTGT--GGGT--T-TGGATGTGG-CTTTCTGATCGACGCTTTTT----------
#=GS SaiPod/5-346 DE RSCD01000015.1:c529756-529415 Saitozyma podzolica strain DSM 27192 scaffold_15, whole genome shotgun sequence
SaiPod/5-346 ---------------TCTTCTTGTTCTCTATCGACG-ATACTTT-GCAG-GTGAGTACCAGTATACTTTTGACCCG--------------------------------------------------------------------------------------------------------------------------------------------------CCCCCTCCCCCTTACCTTCGTCTACGGCTCTGGGCTCGTCCGCTGACATGCATCG------------------------TAG---GATT-TCTGTATAGTAAACGTC-CTTTTTCGCTAGTCTACACTAGCCACATTTTCCACGTCGAGTTGATGATCCAGTC-----CCC-GCCCG--GCTCTTTCACAGAGG---CATTTGG--C-G-A------------CCC-----GTCT-CTCG-GGAC------GGG--------------A-CG--CCA-TCGAGGAAGCTGGCGG-----T-GTCGT-----GCC-GA--GCTC------GACC-TTTG-GG----AA--GAGC-GA--GGT----CGAC-------CCGC--GGGC--T-CGGGCG-GG-CTCTCTGATCGACGTTCCGT----------
#=GS KocImp/3-393 DE NBSH01000010.1:c93173-92783 Kockovaella imperatae strain NRRL Y-17943 BD324scaffold_10, whole genome shotgun sequence
KocImp/3-393 -------------------------TTCTCTAGAT-TATACTCTTGCAG-GTGAGTGGACCCCCTACCATTGAAAAGGCAGCGAGAGCTTGTAGGAAGGGCCAGAGGTG--------------------------------------------------------------------------------CCCTCGAGGGTGTCTGAATACTTTTAGATCTCTCTCGCACCTCGCTCCGCTCGTTGCTCGTCGCTAGTTGCACCGCTGACTCGTCTCT------------------------CAG---GATT-TCTGTATAGTTAGTAT-TTATCTTTGCTAGTCTACACTAGCCACATTTTCCACATCGAGGGGATGATCCAGT-----ACCC-GCTCC--GCTCT-TCACAGAGA---CATCTTGACG--------------------T-----GC-TCCTCGC---------------------------CGT-CAA-TCGAAGAAGCTGGCAGGGA-----TCGTCAA---TCG-A---CTC-----T--TC--ACG-GG----TT--GAG-----CGA-----CGG-T---TTCCTGT--GGGCG-AT-GAGCG-GG-CTTTCTGATCGATGTAGTTT----------
#=GS DioHun/1-347 DE NW_026515766.1:c32347-32000 Dioszegia hungarica strain PDD-24b-2 chromosome Unknown MKK02contig_2, whole genome shotgun sequence
DioHun/1-347 --------------------------TTCATCGTATCATACTCT-GCAG-GTCAGTACCCCTACCATTCTATCCCTCCCCCTTCCCTCCCATACCCCCCTTCTCCCCCTCTCCGTCCTCCTCTCTCA-------------------------------------------------------------------------------------------------------------------------CTCGCCCGGACTCCAGCTGACCCCCT---------------------------CAG---GAT-TTCTGTATAGTCACTG-TTCTCTTATGCTAGTCCACACTAGTCATAAATTCCACGTCGAGGCGATGATACAGT-----ACCC-GCTC-G-GCTCTCTTACAGAGG---CATTT---CC----------AG----A---T---CGCT--CTC--GGTG------T---GAC-----------GG----A-TCGAGGACGCTGGCGGTTGA-T--GTT--GA---GCTGA-----------G--CT-CTAG-GGC------------AA-GGC---AAGAC----TCGGCTGT--GGGC--A--GAGCG-GG-CTTTCTGATCGACGTTCCTA----------
#=GS NaeAub/1-335 DE JASGYU010000044.1:121659-121993 Naematelia aurantialba strain 25 NODE_44, whole genome shotgun sequence
NaeAub/1-335 ------------------TGCTCTTCTTTAGCGGA-CATTCTCT-GCAG-GTATGTGGACGCCTTCATTTGGCCTTTCCTCACCTCTCCAGG--------------------------------------------------------------------------------------------------------------------------------------------------TCTCTCTACCGCTTCTACGAGCTCCGCTGACCCGCCCG-------------------------CAG---GATT-TCTGTATAGTTATTGTCTCGCTTTTGCTAGTCTACACTAGCCATACTATCCACGTCGAGGTGATGATCGAGTC-----CCC-GCCCC--GCTCTTTCACAGAGA---CCTCTGG----T--------C----GTCC------TTC--TC--GAG------GGAC-------------AG-----CCA-TCGAAGAAGCTGGCGG-----T--GTC---G---GCTGGA---TC-T--CT--T-CTCGGA-GAG--T---GA-----AGGC----TGGC--------CCGT--GGGCGGC---GGCG-GG-CTTTCTGATCGACGTCCTCTTTT-------
#=GS TreFuc/1-495 DE BRDD01000065.1:c264195-263700 Tremella fuciformis NBRC 9317 DNA, KCNB80TF.65, whole genome shotgun sequence
TreFuc/1-495 ---------------------TCTTCTTTGTCGAA-CATACTTT-GCA--GTAAGTCCATTTACTACGTTTGCGGTCCCCATGCTGCTCCTGTGTCTCTCTCACCACTCCCACTCGTCTCCCCGTCGTCTGTTCCACCTCTCCTGCGAAAAGCGCGGCGAAACGAGCTACTTGCCACCTCCCCCTTTTCCTCACCTCGTCCCCGGGTCGGAGGAGCAGCGAGCGGCCAGCAAACCGCAACCAGCGATGAGAGAAGAGCACACCGCTGACCCG-----------------------------CAG--GGATT-TCTGTATAGTTAATGTCTCGTCTACGCTAGTCCAAACTAGCCTCCAATTCCACGTCGAGGTGATGATCTCC------ACCC-GCCCC--GCTCTTTCACAGAGG---CCTTTAGGCC----CGCC--GA---GCT------GTTC-TTCACGGAC------GGC--GAG--GGCG-----GGCACTA-TCGAAGAAGCTGGCGAC---GAA-TCT---G------ACA-------CCTT--TC-GAAA-GAGAGG--CG--------AGG--AC------GA---GTCGC--GAGCG-C--GGGCG-GGATATTCTGATCGACATTTTTTTCCCT-----
#=GS TreYok/1-487 DE BRDC01000043.1:c1525853-1525366 Tremella yokohamensis NBRC 100148 DNA, KCNB35TY.43, whole genome shotgun sequence
TreYok/1-487 ---------------------TTCTTCTTTGCGAA-CATACTT--GCA--GTAAGTCCATTTACTACGTTTGCGGTCGCCATGCTGCTCCTGCGTCCCTCTCACCACTCCCAATCGTCTCCCCGTCGTCTGTTCTACCTCTCCTGCGAAAATCGCGGCGAAACGAGCTACTTGCCACCTCCCCCCTTTCCTCCCCTCGTCCCCG-GTCAGAAGAGCAGCGAGCAGCTAGCAAACCGCGACAAGCGACGAGAAAAGGGCATACCGCTGACCCG-----------------------------CAG--GGATT-TCTGTATAGTTAATGTCTCGTCTACGCTAGTCCAAACTAGCCTCCAATTCCACGTCGAGGTGATGATCTCC------ACCC-GCCCC--GCTCTTTCACAGAGG---CCTTTAGGCC----TGCC--GA---GCT------GTTC-TTCACGGAC------GGC--GAG--GGCG-----GGCACTA-TCGAAGAAGCTGGCGAC---GAA-TCT---G------ACA-------CCTT--TC-GAAA-GAGGGG--CG--------AGG--AC------GA---GTCGC--GAGCG-C--GGGCG-GGATATTCTGATCGACATTTTT-----------
#=GS CryGC6/1-266 DE JALPBY010000016.1:108310-108575 Cryptococcus sp. GC_Crypt_6 iso00_61_16, whole genome shotgun sequence
CryGC6/1-266 --------------TACTTCTCTTTTCTTCATTGACCA-ACTCTTGCAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATT-TCTGTATAGTTAATG-GTCTTCTTTGCTAGTCCACACTAGCCACATTTTCCACGTCGAGGTGATGATCCAGTC----ACCC-GCCCC--GCTCTTTCACAGAGA---CCA-ATTT---T--AGCC---------------CTTCC--TC--GGAAG----------CA---GGTT------AA-AT-TTCGAAGAAGCTGGCGA-----T-CCGC-ATA---CT--C--GTC-GA-CCT------CTCG-AGG--AA--GAC--G--AG----GAGCGA-G-----TCGT--GGGC--T-GGGGCA-GG-CTTTCTGATCGACGCTCTTTCTT-------
#=GS CryGC4/4-306 DE JALPCA010001027.1:550-860 Cryptococcus sp. GC_Crypt_4 iso00_46_1063, whole genome shotgun sequence
CryGC4/4-306 --------TTTTGTATCTTTCATTCCTCAAGCGAA-CATTCTCT-GCA--GTAAGTTGACACCACCATTTCGCCCTCG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCCACGCTGATAATTCT--------------------------TAG--GGAT-CTCTGTATAGTTAATGTCTCGACTTTGATAGGCTAAACTAGCCACATTTTCGACGTCGCGGTGATGATTTAGT-----ACCC-TCTTC--GCTCTTTCACAGAGA---CTTTTGG--C-----------------------CATCT-TTAG-GGATG----------T-------------G--ACCA-TCGAAGAAGCTGGCGAT----C--AAT------CGTC-AA--TCG-A-CCC-----TTTAT--GGG-CTG-TGA-----GATG----ATT-------GTCGT--GGGCG-T--AAGAG-GG-CTTTCTGATCGACG----------------
#=GS TreTag/200-490 DE CAJHEQ010000573.1:c10105-9307 MAG: Tremellales sp. Tagirdzhanova-0007 genome assembly, contig: TREM_573, whole genome shotgun sequence
TreTag/200-490 TTCTTTTCCCCCAAATTTCCTTTTTTCTTATCGACG-ATACTTC-GCAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATT-TCTGTATAGTCATTGTCCGATTCTCGCTAGTCTACACTAGCCACATTTTCCACGTCGAGTTGATGATCTAGTC----CTCC-GCCCC--GCTCTTTCACAGAGA--ACTTTTCGTCC-T--GGGTG-C--ATTCTTT---TCCTC-GTCAAGAGGG--C-GAGAGTT----TATCC-C--GGA-CGA-TCGAAGAAGCCGGCGACC---T----------------GA-TCTG-GTTCT-----TCGAG--AGAAGCACCGGG-GA-------------T----GGTCGT--GGGCG-T--GGGCG-G-ACTTTCTGATCGACG----------------
#=GS PapLau/208-455 DE JDSR01001049.1:c26364-25910 Papiliotrema laurentii RY1 contig_1086, whole genome shotgun sequence
PapLau/208-455 ----------------------TTCTTCACTTGAC-CATATTCT-GCAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAT-CTCTGTATAGTTATCGTCTCGTTTTTGCTAGTCTACACTAGCCACATTTTCCACGTCGAGGGGATGATCTAGTT-----CCC-GCCCC--GCTCTTTTACAGAGG--ACTT-TGG-CG-----------------------TTTTC-TTCG-GAAGA------------------------CG-ACCA-TCGAAGAAGCTGGCGG-----C-TGTT------TGTC-GA--GCT--GCTC----CTTTGC--GGGC----GGT--AA-GACG----AACA-------CCGT--GGGCG-C--GGGCG-GG-CTTTCTGATCGACGTCGACT----------
#=GS PapTer/2-372 DE JAHXHD010000715.1:c3210-2840 Papiliotrema terrestris strain LS28 scaffold-714, whole genome shotgun sequence
PapTer/2-372 --------------TTCTTCTTGCCGTTCAGCGAA-CATACTTA-GCAG-GTAAATTGGGAACTCCTTTTACACCCCTCTCAGCCCCTTCCTCGTCGACAGACCACCTCTCTTCACCATCCCTCGCACCCGG--------------------------------------------------------------------------------------------------------------CTCTCCTCCTGCACGAACATGGCTGACTCTG----------------------------CAG---GATT-TCTGTATAGTTAATGTCTCGTTTTTGCTAGTCTACACTAGCCACATTTTCCACGTCGAGGGGATGATTTAGT-----ACCC-GCTCC--GCTCTTTCACAGAGA---CCTTTGG--C----------------CTC------GCC-CTCG-GGC------GGG---T-------------G--ACCA-TCGAAGAAGCTGGCGACA--GGA--GC---C------GAT-------CTAC--CC-CTTGTGGGTGG---------TG-------AAGC--CGA--TGTCGC--GGGCG-A--GAGCG-GG-CTTTCTGATCGACGTCCTTT----------
#=GS CryFla/103-472 DE CAUG01000664.1:c55558-55182 Cryptococcus flavescens NRRL Y-50378 WGS project CAUG00000000 data, contig NODE_2187_length_71177_cov_45_840343, whole genome shotgun sequence
CryFla/103-472 --------CCTTCGCTTTGTTTGCCGTTCAGCGAA-CATACTCA-GCAG-GTAAATTGGATACTCCTTTTTCGTCCCTCACAGCCCTTATTCGACGACAAACCACCCCTCTACGCCATCGCTTGCATCGTG---------------------------------------------------------------------------------------------------------------CTCCCCATCTGTGTGAATTTGGCTGACCCCG----------------------------CAG---GATT-TCTGTATAGTAAATGTCTCGTTTTTGCTAGTCTACACTAGCCACATTTTCCACGTCGAGGGGATGATTTAGT-----ACCC-GCTCC--GCTCTTTCACAGAGA---CATTTGG--C----------------CTC------GCC-CTCG-GGC------GGG---A-------------G--ACCA-TCGAAGAAGCTGGCGACA--GGA--GC---C------GAT-------CTAC--CC-CTTGTGGGTGG---------TG-------ACGC--CGA--TGTCGC--GGGCG-A--GAGCG-GG-CTTTCTGATCGACG----------------
#=GS BulAlb/4-379 DE CAMYTR010000032.1:c72896-72525 Bullera alba genome assembly, contig: jcf7180000012125, whole genome shotgun sequence
BulAlb/4-379 --------------TATTCTTCTTCTTCAAGCGAA-CATACTTA-GCA--GTGAGTGACAACGTCCTTTTGGCTGCCTCCAGAGCCCCAGTCCACACTTCCACACGCCTTGATG------------------------------------------------------------------------------------------------------------------CCCTCCCACTGCCTCCCGTCGCTTGGAAACCGTTTACTGACTCTTCTC-------------------------TAG--GGATT-TCTGTATAGTTAATGTCTCGTCTTTGCTAGTCTACACTAGCCACATTTTCCACGTCGAGGTGATGATCTAGTC-----CCC-ACCCC--GCTCTTTCACAGAGA---CTTTTGG--T-------------------T--CGTTGC-TTCG-GCGACG-C-------T-------------A---CCA-TCGAAGAAGCTGGCGG------CGGTA----CGAGTCGAA--TCG----GC-----CTTGT--GT------TGA--CAAGACTTG--TACC-------CCGT--GGGCG-TT-GGGTG-GG-CTTTCTGATCGACGTCCTCTT---------
#=GS TriOvo/7-356 DE WEIQ01000003.1:539947-540296 Trichosporon ovoides strain 2NF903A scaffold3-size1597232, whole genome shotgun sequence
TriOvo/7-356 --------------------TTTTTTCCATGAAGATCATACTAT--CAG-GTGAGCCTAGCCACTATGAGCTCCAACAGCTTCTCTCGACGCTGCTTGAG--------------------------------------------------------------------------------------------------------------------------------CTCTCCCCCTCCTTCCTCGCTGTCTTGCGCGCGTTGCTAACTTTCTC--------------------------CAG---GATTCTCTGTATAGTCACTGTCT-TTTCTCGCTAGTTCACACTAGCCACATTTTCCACGTCGAGGAGATGATCTAGTC-----CCC-TCCCG--GCTCTTTCACAGAGACCACTTTGCA--------------------------ACACC-TCCG-GGTGT----------------------C-----TGCTCCGAAGAAGCTGGCGGCGC--T-GGCA---------G-AA------C--CT-GAC-CCTCT-GTGG-AAA-GG------C-----GATGCC----GCACCGT--GGGC--T-CGGGAG-GG-CTTTCTGATCGACGTTCTTT----------
#=GS TriCor/4-368 DE JXYL01000018.1:c708008-707644 Trichosporon coremiiforme strain JCM 2938 scaffold_0018, whole genome shotgun sequence
TriCor/4-368 --------------TATAGCTTTTTTCCATGAAGATCATACTAT--CAG-GTGAGCCTAGCCACAGCTACCTCAGAGAGCCTCTCCAGCGCTTCTCTCGAGCTCTAGCGAC---------------------------------------------------------------------------------------------------------------------CTTCCTCC-CCCTTCC--TCCTTCTCCTCGCTCTTGCTAACTTTCTC--------------------------CAG---GATTCTCTGTATAGTCACTGTCT-TTTCTCGCTAGTTCACACTAGCCACATTTTCCACGTCGAGGAGATGATCTAGTC-----CCC-TCCCG--GCTCTTTCACAGAGACCACTTTGCG--------------------------ACACT-CTTGCAGTGT----------------------A-----CGCTCCGAAGAAGCTGGCGGCGC--T-GGCA---------G-AA------C--CT-GAC-CCTCT-GTGG-AAA-GG------C-----GATGCC----GCACCGT--GGGC--A-CGGGAG-GG-CTTTCTGATCGACGTTCTAT----------
#=GS TriAsa/1-367 DE NW_014040915.1:534469-534835 Trichosporon asahii var. asahii CBS 2479 unplaced genomic scaffold scaffold00009, whole genome shotgun sequence
TriAsa/1-367 ------------CCTATAGCTTTTTTCCATGAAGATCATACTAT--CAG-GTGAGCCTAGCCACAGCTACCTCAGAGAGCCTCTCCAGCGCTTCTCTCGAGCTCTAGCGAC---------------------------------------------------------------------------------------------------------------------CTTCCCCCCT-CTTCT---CCTTCTCGACGCGCTTGCTAACTTTCTC--------------------------CAG---GATTCTCTGTATAGTCACTGTCT-TTTCTCGCTAGTTCACACTAGCCACATTTTCCACGTCGAGGAGATGATCTAGTC-----CCC-TCCCG--GCTCTTTCACAGAGACCACTTTGCG--------------------------GCGCT-CTCGCAGCGT----------------------A-----CGCTCCGAAGAAGCTGGCGGCGC--T-GGCA---------G-AA------C--CT-GAC-CCTCT-GTGG-AAA-GG------C-----GATGCC----GCGCCGT--GGGC--A-CGGGAG-GG-CTTTCTGATCGACGTTCCATT---------
#=GS TriInk/1-353 DE JXYM01000007.1:564183-564535 Trichosporon inkin strain JCM 9195 scaffold_0007, whole genome shotgun sequence
TriInk/1-353 --------------------TTTTTTCCATGAAGATCATACTAT--CAG-GTGAGCATAGCCACTACGGCGCGCCCGAGGGCCTGTTCCTCGACGCTCCCCCCC----------------------------------------------------------------------------------------------------------------------------CTCTCTCCCCCTTTT---GTCGTGTGCGCGCAGCTGCTGACGTTCTC--------------------------CAG---GATTCTCTGTATAGTCACTGTCT-TTTCTCGCTAGTTCACACTAGCCACATTTTCCACGTCGAGGAGATGATCTAGTC-----CCC-TCCCG--GCTCTTTCACAGAGACCACTCTGCA--------------------------ACACC-TCCG-GGTGT----------------------C-----TGCTCCGAAGAAGCTGGCGGCGC--T-GGCA---------G-AA------C--CT-GAC-CCTCT-GTGG-AAA-GG------C-----GATGCC----GCGCCGT--GGGC--A-CGGGAG-GG-CTTTCTGATCGACGTACTCTGC--------
#=GS CugtOle_01/1-335 DE NW_027072170.1:4099040-4099374 Cutaneotrichosporon oleaginosum strain ATCC 20508 chromosome Unknown ATCC20508_contig01, whole genome shotgun sequence
CugtOle_01/1-335 ----------------TTTCTTGTTCTCTAGTGAC-CACACTCT-GTAGGGTGAGTATCTACCTGCCCGTCTAGGCCCCCTCCTTGCTGCTCGACCTCCCATCCTCCTCGCCGCCTCATCCCCCATCGCCAG----------------------------------------------------------------------------------------------------------------------------------TGCTGACATC-----------------------------CAG----AT-CTCTCTACAGTAACCGT-TCACTCTCGCTAGTTCACACTAGCCACATTTTCCACGTCGAGGCGATGATATAGC------CCC-TCGCC--GCTCT-TCACAGAG----TACTTG--------------------TC--C----CCG-GCCT-CGG----A---GA---------------------CA--CGAAGAAGCTGGCG------T-G------A-CGCTG-GAT-CCC------AACC-GAAA-GG----GA--GGG--TGACGGT--T--G----A----CCGT--GGGCG-C--GCGAG-GG-CTTTCTGATCGACTTCCGT-----------
#=GS CugtOle_06/1-391 DE NW_027072175.1:297527-297917 Cutaneotrichosporon oleaginosum strain ATCC 20508 chromosome Unknown ATCC20508_contig06, whole genome shotgun sequence
CugtOle_06/1-391 ----------------------TTTCTCTAGTGAC-CACACTCT-GTAGGGTGAGTACCCCCCTCCTTTCCCACCCCCTGCCCCAGCGCGCCATCGCATCCAGCGAGGCGCTGCTGTTGAGCGTCCTGGAAAG-----------------------------------------------------------------CCTGCGCGCTCGCCGCCACTCGCTTCAGCGGATGTCTTCCCATCTCTATATTGCGAGTCATAGACGCTAACGCC-----------------------------CAG----AT-CTCTCTACAGTAACCGT-TCACTCTCGCTAGTTCACACTAGCCACATTTTCCACGTCGAGGCGATGATATAGC------CCC-TCGCC--GCTCT-TCACAGAG----TACTTG--------------------TCT-----------CC------------GGA---------------------CA--CGAAGAAGCTGGCGG-----G--------A-CGCTG-GC-GCCT------GACC-GAAA-GG-----GA-GGGC-AA-CGGC--C--G----A----CCGT--GGGCG-C--GCGAG-GG-CTTTCTGATCGACTTCCCCCTTCC------
#=GS CutCav_5/1-406 DE NC_083397.1:2702910-2703315 Cutaneotrichosporon cavernicola HIS019 DNA, chromosome: 5
CutCav_5/1-406 ----TCGCCAGATGCATCTTAGAATCTTTAGTGAC-CACACTCT-GTAGGGTGAGTACCCCCACCTTCCTTTCCCTCTGCCTCCCCAGCACCATCGCGTTCAGCGATCGCTTCGTCG---------------------------------------------------------------------CGCTCGTCATCCGCTCTCTAGCAGATGCGCAGTGTCGTCACAGCATCCACCGCCCCCTCTTCCGCTCTGCTCGCAGTGCTAACCCTC----------------------------CAG----AT-CTCTCTACAGTAACCGT-TCACTCTCGCTAGTTCACACTAGCCACATTTTCCACGTCGAGGAGATGATATAGC------CCC-TCGCC--GCTCT-TCACAGAG----TACTTG--------------------TCC-----------CT------------GGA---------------------CA--CGAAGAAGCTGGCGG-----G--------A-CGCTG-GC-GCTC------GACC-GCAA-GG-----GA-GAGC-AA-CGGC--C--G----A----CCGT--GGGCG-T--GCGAG-GG-CTTTCTGATCGACTTCCCCTTCCC------
#=GS VanFra/111-485 DE BEDY01000008.1:19435-19809 Vanrija fragicola DNA, scaffold: scaffold_8, strain: JCM 1530, whole genome shotgun sequence
VanFra/111-485 ----------------TGAATGTTTCTTCAGCAGT-CATACTCT-GTAG-GTGAGTACCACTACCATCTCCTCCCTCTCCTCCCTCACACAGCTCCTCCTCGCGAAGAGCTGAGCCTTTCGGGG---------CCTCCTACCACGCCGCGCTCTCCAGTTCACCGCTTACCCTTCTC----------------------------------------------------------------------------------------------------------------------------CAG---GAT-CTCTCTACAGTTTACGTCTCTTTCTCGCTAGTTCATACTAGCCACATTTTCCACGTCGAGGCGATGATACAGTC-----CCC-TCCCG--GCTCTCTTACAGAGG--CCCGA--G------------------CCCA----CTGCT-TTCG-AGCTT----TGGG-------------A------C---GCGAAGAAGCTGGCGGCGC---T--GG--A-----C-AAA--CCCGA-CCC-----CGCGT--GGG-AA--GGG--CGA-G----A-CC------GCACCGT--GGGC--A-CGGGAG-GG-CTTTCTGATCGACGTTCC------------
#=GS VanAlb/1-252 DE NW_027191423.1:c2674622-2674371 Vanrija albida strain AlHP1 chromosome Unknown contig_4, whole genome shotgun sequence
VanAlb/1-252 ---------------TCTTTTGTTTCCCCATGTGTCTATACTCA-GTAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAT-CTCTCTACAGTATACGTCTCATTCTCGCTAGTCTACACTAGCCACATTTTCCACGTCGAGGCGATGATCTAGC------CCC-TCCCG--GCTCTCTTACAGAGG---------------------------ACCCGG--GCGC-----GTGCTTGCA-CGTCCCA-----------------------TCGAAGAAGCTGGCGGC----G--GGC-GA---GTCCGAA---------CC--CC-TCTC--GGGG-CGA-GGGC----------GAGCC-G-----GCCGC--GGGC--T-CGGGAG-GG-CTTTCTGATCGACTTGTAGTT----------
#=GS VanPse_4/1-245 DE NC_085852.1:2555032-2555276 Vanrija pseudolonga chromosome 4, complete sequence
VanPse_4/1-245 ----------------------TTTCCCCATGTGTCTATACTCA-GTAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAT-CTCTCTACAGTATACGTCTCATTCTCGCTAGTTCATACTAGCCACATTTTCCACGTCGAGGTGACGATCTAGC------CCC-TCCCG--GCTCT-TCACAGAGG---------------------------ACCGCG--GGGCGTGCGCGCAAGCGC-ACGCCCA-----------------------TCGAAGAAGCTGGCGGTG---G---GC-GAG---TCGGAC---TC-CTCTC-----GGGG--GGGA-C---GA------CGA-----GC--A----CGCCGC--GGGC--T-CGGGAG-GG-CTTTCTGATCGACGAGT-------------
#=GS VanPse_5/1-258 DE NC_085853.1:c562499-562242 Vanrija pseudolonga chromosome 5, complete sequence
VanPse_5/1-258 -----------TCCAGTGTTGTTTTCTTCATGTGTCTATACTCA-GTAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAT-CTCTCTACAGTATACGTCTCATTCTCGCTAGTTCATACTAGCCACATTTTCCACGTCGAGGCGATGATCTAGCC-----CCC-TCCCG--GCTCTCTTACAGAGG--ACCCCGAG------------------CGTC-------GC-TCCC-GC-------GACG-------------T------CTCATCGAAGAAGCTGGCGGCG---A---GG--A-----C--GA-GCCCGA-CCC-----CCTGT--GGG-AA--GGGC-GA--G----G-CC--G----CGCCGT--GGGC--T-CGGGAG-GG-CTTTCTGATCGACGTTCC------------
#=GS VanHum/10-263 DE QKWK01000007.1:1135120-1135373 Vanrija humicola strain CBS 4282 CBS4282_scaffold07, whole genome shotgun sequence
VanHum/10-263 -----------TCCAGTGTTGTTTTCTTCATGTGTCTATACTCA-GTAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAT-CTCTCTACAGTATACGTCTCATTCTCGCTAGTTCATACTAGCCACATTTTCCACGTCGAGGCGATGATCTAGCC-----CCC-TCCCG--GCTCTCTTACAGAGG--ACCCCGAG------------------CGTC----------TTCG----------GACG-------------T------CTCATCGAAGAAGCTGGCGGCG---A---GG--A-----C--GA-GCCCGA-CCC-----CCTGT--GGG-AA--GGGC-GA--G----G-CC--G----CGCCGT--GGGC--T-CGGGAG-GG-CTTTCTGATCGACGTTCC------------
#=GS CrySki/5-364 DE BCHT01000022.1:143205-143564 Cryptococcus skinneri DNA, scaffold: scaffold_21, strain: JCM 9039, whole genome shotgun sequence
CrySki/5-364 --------------------TCTTTCTCCTCATGATCATATTCT-GCAG-GTCGGTTTATACCCCATTCTTTTGCTTTCCCTCGCTCTACCGC----------------------------------------------------------------------------------------------------------------------------------------------------------TCTTCCAGACCACTCTACTGACACGCCTTGCTCTCTCT----------------CAG---GATT-TCTGTATAGTTAATGT-TCATTTTCACTAGTTTACACTAGTCACATTTTCCACGTCGAGGGGATGATATAGTC-----ACC-CCCC-T-ACTCTTTCACAGAGA---CTTTTGG------GTTCTT---ATCGCCC----CCTTCTCTTCTGGGGG--T-GGGTGG---TAAGAAC--------CCA-TCGAAGAAGCTGGCGA------T-CCG------ATTG-AA---TT--TTCGAGCT-CTCG-AGCGAG----GG---AA-CGAT--ATCGG--------TCGT--GGGT--CT-GGGGG-GT-CTTTCTGATCGACGTCCTTT----------
#=GS TreMes/3-477 DE SDIL01000112.1:c62358-61884 Tremella mesenterica strain ATCC 28783 supercont1.112, whole genome shotgun sequence
TreMes/3-477 --------------TCTTTCTTCTTCTTCAGATAGACCAACTTT-TCAG-GTGCGCGGGATAGCTTCTTTTTTCCTCTTCTCTCACCCTTATCATCTCCTCCTTGCACGATCACTCTGTTCACAATCTGTCTCATCTGTCTTCTCGCTCACCCGATGAATAATTGTCCAGCCAAGAGATTCAGACGTGGAAACCGAAGCCGGGTGGGAAGACGTATGGAAGCGAAGAA------------------------------CTATCGCTGACCTTT----------------------------CAG---GATT-TCTGTATAGTTATCGTCTCGTCTTTGCTAGTCCACACTAGCGACAAATTCCACGTCGAGGTGATGATCACCC------CCC-GCTCC--GCTCTCTCACAGAGG---CCTTTGG-AC----CCGTG-T---TTTGT---CATTTC-TTTT-GAGGTG-A-ACGAA------TGTGG----GT--CTA-TCGAAGAAGCTGGCGAC---GAA-TCT---G----AC-------C--TTTT-----CGAA---AGAA----G----A--GT----GAGGA-CGA---GTCGC--GGGCG-A--GGGCG-GG-ATTTCTGATCGACGCGAAATTTTTT-----
#=GS CryGC1/1-378 DE JALPCD010001213.1:c1616-1238 Cryptococcus sp. GC_Crypt_1 1213, whole genome shotgun sequence
CryGC1/1-378 --------CACCGACATCTCTATTTCTCTAACGA-ACATACTTTT-CAG-GTGAGTGATATATACCTTTTCCCTCCTCTAGACGCTCGACAACCTCCTCTACACTCTCTACGA---------------------------------------------------------------------------------------------------------------------------------------CCTTTGGAATGCATTGCTGACGTTCTC--------------------------TAG---GAT-CTCTGTATAGTACACATGTC-GTTTTGCTAGTCTACACTAGCCACATTTTCCACGTCGAGGTGATGATCTAGTACCTTACACAACCCC--GCTCTTTCACAGAGA---CCT-TTC------TTCCT--TT-GCTCGG--GCTGCTC--TC--GGGTGGT--TTGGGC----AGGAA---------GGA-TCGAAGAAGCTGGCGAAGA-GA-CGGT--------C--G--ACTC---GCT-----TTCG---GGC---T-GGGT-G--GACTG-GA--------TCTTCGT--GGGCG-T--GGGTGG-G-CTTTCTGATCGACGTCGT------------
#=GS CryGC3/1-281 DE JALPCB010000066.1:c65648-65367 Cryptococcus sp. GC_Crypt_3 iso00_45_66, whole genome shotgun sequence
CryGC3/1-281 ------------TCTCTGTTCTTCTTCTTCATGAT-CAAACTCT-GCAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATCTAATAATACAGCGAATGATCTTTCTTGCTAGTCCACACTAGCCACATTTTCCACGTCGAGGTGATGATCCAGTC----ACCC-GCCCC--GCTCTTTCACAGAGA---CCT--TTT------AGCC------CTTCG--CCTCCTC-GCGA-GAGGAGGT-CGGAG-C----GGT----C-GAAT---TTCGAAGAAGCTGGCGA-----T-CCGC-ATA---CT--C--GTC-GA-CCT------CTCG-GGG--AA--GAC--A--AG----GAGCGG-C-----TCGT--GGGC--T-GGGGCA-GG-CTTTCTGATCGACGCTCTTTT---------
#=GS NaeEnc/4-272 DE MCFC01000048.1:c73938-73670 Naematelia encephala strain 68-887.2 BCR39scaffold_48, whole genome shotgun sequence
NaeEnc/4-272 TTTTGCGATTCTGACTATTCATCTTCCTTAGTGAT-TATGCTTC-GCAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATT-TCTGTATAGTATATATCTCACTTTTGCTAGTCTACACTAGCCACACTATCCACGTCGAGGTGATGATCGAGTC-----CCC-GCCCC--GCTCTTTCACAGAGA---CTTTTGG----T--------C----GTTC-C----TCC-TTGTTGGG------GAAC-------------AA-----CCA-TCGAAGAAGCTGGCGG----TT--GTT---G---ATTGGA---TC-T--CT--CT-TCGG-GGAG--T---GA---A--GGT---C-AAC--------CCGT--GGGCGGC---GGCG-GG-CTTTCTGATCGACGTCT-------------
#=GS TreEnc/1-235 DE Tremella encephala Small nucleolar RNA U3 URS0000D98D81_71784
TreEnc/1-235 ------------------------------GTGAT-TATGCTTC-GCAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATT-TCTGTATAGTATATATCTCACTTTTGCTAGTCTACACTAGCCACACTATCCACGTCGAGGTGATGATCGAGTC-----CCC-GCCCC--GCTCTTTCACAGAGA---CTTTTGG----T--------C----GTTC-C----TCC-TTGTTGGG------GAAC-------------AA-----CCA-TCGAAGAAGCTGGCGG----TT--GTT---G---ATTGGA---TC-T--CT--CT-TCGG-GGAG--T---GA---A--GGT---C-AAC--------CCGT--GGGCGGC---GGCG-GG-CTTTCTGATCGAC-----------------
#=GC SS_cons ---------------------------------------(((-(-((((------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------(----))))))-)))---------------((((((----))))))-----------<<<<<<--------------------[[[-[[[[[--[[[[[[----------------(((((((--(((((((--(((((((--(((((((------)))))))--))))))---))))))))--))))-)))-------------((((((((---((((----((((((---(((((--((((--((------))))))----)))))---))))))--))))---))))))))--]]]]]]--]]]]]]-]]--------->>>>>>----------------
//
R2R-script ‘makefig’ run as
bash$ sh makefig:
#!/bin/bash
IN=../u3-r2r-in2.sto
MID=u3_R2R.cons2.sto
OUT=../U3-tremellomycetes_R2R_.svg
# calculate consensus
r2r --GSC-weighted-consensus $IN $MID 3 0.97 0.9 0.75 4 0.97 0.9 0.75 0.5 0.1
# create the svg figure
r2r $MID $OUT
R2R input ‘u3-r2r-in2.sto’:
# STOCKHOLM 1.0
#=GF R2R keep allpairs
#=GS U3b/1-251 DE ncrna 8:892817:893129:1 (as Rfam URS0000D98D81_71784; Tremella encephala Small nucleolar RNA U3
U3b/1-251 ATCGAC-CTTACTCT-GCAGGAT-CTCTGTATAGTAATCGT-TCTTTTTTGCTAGTCCACACTAGCCACATTTTCCACGTCGAGGGGATGATCTAGTT----ACCC-GCTCC--GCTCTCTCACAGAGG---CATTTAG-CC-A---TCGG-T---CCTC--T-----CT-TTCG-AG-----T--GAGG-TT---CCGA--GA-GG--TTA-TCGAAGAAGCTGGCGGT-------CGC-ATA--CCTG------CCAA---C--CC-TCCG-GGG---AA--GG---TA-TGGG--A-GCG-------ACCGT--GGGC--T-GGAGCG-GG-CTTTCTGATCGACG
#=GS CNAG_13174/1-251 DE CP003833.2:c302983-302691 Cryptococcus neoformans var. grubii H99 chromosome 14, complete sequence
CNAG_13174/1-251 ATCGAC-CTTACTCT-GCAGGAT-CTCTGTATAGTAATCGT-TCTTTTTTGCTAGTCCACACTAGCCACATTTTCCACGTCGAGGGGATGATCTAGTT----ACCC-GCTCC--GCTCTCTTACAGAGG---CATTTAG-CC-A---TCGG-T---CCTCT-------CT-TTCG-AG-------GGAGG-TT---CCGA--GA-GG--TTA-TCGAAGAAGCTGGCGGT-------CGC-ATA--CCTG------CCAA---C--CC-TCCG-GGG---AA--GG---TA-TGGA--A-GCG-------ACCGT--GGGC--T-GGAGCG-GG-CTTTCTGATCGACG
#=GS R265_10/12-261 DE NC_088594.1:608060-608333 Cryptococcus decagattii chromosome 10, complete sequence
R265_10/12-261 ATCGAC-CTTACTCT-GCAGGAT-CTCTGTATAGTAATCGT-TCTTTTTTGCTAGTCCACACTAGCCACATTTTCCACGTCGAGGGGATGATTTAGTT----ACCC-GCTCC--GCTCTTTCACAGAGG---CATTTAG-CC-A---TCGG-T---CCTCT-------CT-TTCG-AG-------GGAGG-TT---CCGG--CA-GG--TTA-TCGAAGAAGCTGGCGGT-------CGC-ATA--CCTG------CCAA---C--CT-TCC--GGG---AA--GG---TA-TGGG--A-GCA-------ACCGT--GGGC--T-GGAGCG-GG-CTTTCTGATCGACG
#=GS IND107_11/11-261 DE NC_089951.1:c213666-213394 Cryptococcus tetragattii IND107 chromosome 11, whole genome shotgun sequence
IND107_11/11-261 ATCGAC-CTTACTCT-GCAGGAT-CTCTGTATAGTAATCGT-TCTTTTTTGCTAGTCCACACTAGCCACATTTTCCACGTCGAGGGGATGATTTAGTT----ACCC-GCTCC--GCTCTTTCACAGAGG---CATTTAG-CC-A---TCGG-T---CCTCT-------CT-TTCG-AG-------GGAGG-TT---CCGG--GA-GG--TTA-TCGAAGAAGCTGGCGGT-------TGC-ATA--CCTG------CCAA---C--CT-TCCG-GGG---AA--GG---TA-GGGG--A-GCA-------ACCGT--GGGC--C-GGAGCG-GG-CTTTCTGATCGACG
#=GS WM276_L/1-251 DE CP000297.1:c212431-212136 Cryptococcus gattii WM276 chromosome L, complete sequence
WM276_L/1-251 ATCGAC-CTTACTCT-GCAGGAT-CTCTGTATAGTAATCGT-TCTTTTTTGCTAGTCCACACTAGCCACATTTTCCACGTCGAGGGGATGATTTAGTT----ACCC-GCTCC--GCTCTTTCACAGAGA---CATTTAG-CC-A---TCGG-T---CCTCT-------CT-TTCG-AG-------AGAGG-TT---CCGG--GA-GG--TTA-TCGAAGAAGCTGGCGGT-----C--GC-ATA--CCTG------CCAA---C--CT-TCCG-GGG---AA--GG---TA-TGGG--A-GCA-------ACCGT--GGGC--C-GGAGCG-GG-CTTTCTGATTGACG
#=GS U3a_snR45-U13/1-253 DE AE017343.1:c1423686-1423428 Cryptococcus neoformans var. neoformans JEC21 chromosome 3 sequence
U3a_snR45-U13/1-253 ATCGAC-CTTACTCT-GCAGGAT-CTCTGTATAGTAATCGT-TCTTTTTTGCTAGTCCACACTAGCCACATTTTCCACGTCGAGGGGATGATCTAGTC----ACCC-GCTTC--GCTCTTTCACAGAGG---CATTTAG-CC-G---TCGG-T---CCTCT-------CT-TTCG-AG-------AGAGG-TT---CCGG--GA-GG--TTA-TCGAAGAAGCTGGCGGTAT--GG---T---A---CCA---GTTTTGA---C--CT-CTTG-GGG-------AAAGCT--TGG---G-A----G--ATACCGT--GGGC--T-GGAGCG-GG-CTTTCTGATCGACG
#=GS CNAG_12256/1-251 DE CP003822.1:606650-606905 Cryptococcus neoformans var. grubii H99 chromosome 3, complete sequence
CNAG_12256/1-251 ATCGAC-CTTACTCT-GCAGGAT-CTCTGTATAGTAATCGT-TCTTTTTTGCTAGTCCACACTAGCCACATTTTCCACGTCGAGGGGATGATCTAGTC----ACCC-GCTTC--GCTCTTTCACAGAGG---CATTTAG-CC-G---TCGG-T---CCTCT-------CT-TTCG-GG-------AGAGG-TT---CCGG--GA-GG--TTA-TCGAAGAAGCTGGCGGTAT--GG---T---A---CCA-----GCTGA---C--CT-TTCG-GGG---AA--GGC--T--TGG---G-A----G--ATGCCGT--GGGC--T-GGAGCG-GG-CTTTCTGATCGACG
#=GS R265_2/15-265 DE NC_088586.1:573160-573440 Cryptococcus decagattii chromosome 2, complete sequence
R265_2/15-265 ATCGAC-CTTACTCT-GCAGGAT-CTCTGTATAGTAATCGT-TCTTTTTTGCTAGTCCACACTAGCCACATTTTCCACGTCGAGGGGATGATCTAGTC----ACCC-GCTTC--GCTCTTTCACAGAGG---CATTTAG-CC-G---TCGG-T---CCTCT-------CT-TTCG-GG-------GGAGG-TT---CCGG--GA-GG--TTA-TCGAAGAAGCTGGCGGTAT--GG---T---A--CCAA------CTGG---C--CC-TTTG-GGG---AA--AG---C--TTGG--G-A----G--ATGCCGT--GGGC--A-GGAGCG-GG-CTTTCTGATCGACG
#=GS WM276_C/15-265 DE NC_014940.1:c1379289-1379013 Cryptococcus gattii WM276 chromosome C, complete sequence
WM276_C/15-265 ATCGAC-CTTACTCT-GCAGGAT-CTCTGTATAGTAATCGT-TCTTTTTTGCTAGTCCACACTAGCCACATTTTCCACGTCGAGGGGATGATCTAGTC----ACCC-GCTTC--GCTCTTTCACAGAGG---CATTTAG-CC-G---TCGG-T---CCTCT-------CT-TTCG-GG-------GGAGG-TT---CCGG--GA-GG--TTA-TCGAAGAAGCTGGCGGTAT--GG---T---A--CCAA------CTGG---C--CC-TTTG-GGG---AA--AG---C--TTGG--G-A----G--ATACCGT--GGGC--A-GGAGCG-GG-CTTTCTGATCGACG
#=GS CA1280_3/11-261 DE NC_089930.1:c1354976-1354704 Cryptococcus bacillisporus CA1280 chromosome 3, complete sequence
CA1280_3/11-261 ATCGAC-CTTACTCT-GCAGGAT-CTCTGTATAGTAATCGT-TCTTTTTTGCTAGTCCACACTAGCCACATTTTCCACGTCGAGGAGATGATTTAGTT----ACCC-GCTCC--GCTCTTTCACAGAGG---CATTTAG-CC-A---TCGG-T---CCTCT-------CT-TTCG-AG-------GGAGG-TT---CCGG--CA-GG--TTA-TCGAAGAAGCTGGCGGTAT--GG---T---A--CCAA------CTGG---C--CC-TTTG-GGG---AA--AG---C--TTGG--G-A----G--ATACCGT--GGGC--A-GGAGCG-GG-CTTTCTGATCGACG
#=GS CryDep/15-265 DE NC_089474.1:c556829-556552 Cryptococcus depauperatus CBS 7841 chromosome 7, complete sequence
CryDep/15-265 ATCGAA-CATACTCT-GCAGGAT-CTCTGTATAGTAACTGT-TCTTCTTTGCTAGTCCACACTAGCCACATTTTCCACGTCGAGGGGATGATTCAGTC----ACCT-GCTCC--GCTCTTTTACAGAGA---CATTTGG-TC-G---CTGG-T----CTAC------TCT-TTTC-GGA------GTAG--TA---CCAG--GA-GG--CTA-TCGAAGAAGCTGGCGGC------TTGT-ATG--CCTG------CCAA---C--CT-TTAC-GGG---AA--GG---C--TGGG--A-ACAA-------CCGT--GGGC--T-GGGGCA-GG-CTTTCTGATCGACG
#=GS CryWin/1-256 DE CP034262.1:307141-307399 Cryptococcus wingfieldii strain CBS7118 chromosome 2, complete sequence
CryWin/1-256 ATCGAC-CTTACTCT-GCAGGAT-CTCTGTATAGTAATTGT-TCTTTTTCGCTAGTCCACACTAGCCACATTTTCCACGTCGAGGGGATGATCAAGTT----ACCC-GCCCC--GCTCTTTCACAGAGG---CATTTAG-CC-A-CCGACA------CTTCC-----GGC-TTCG-GTC----A-GTAG--C----TGTTGGGA-GG--TTA-TCGAAGACGCTGGCGGT----A--CGT-ATA---CC-----GACTGA---T--CC-TTC--GGG---AAA-GGTC-T---GG---GAACG-------GCCGT--GGGC--T-GGGGCG-GG-CTTTCTGATCGACG
#=GS KwoShan/20-276 DE NQVO01000013.1:c301038-300621 Kwoniella shandongensis strain CBS 12478 scaffold00013, whole genome shotgun sequence
KwoShan/20-276 AATGAT-CATACTTT-GCAGGATT-TCTGTATAGTCACTGT-TCTTCTTTGCTAGTCTACACTAGCCACATTTTCCACGTCGAGGTGATGATCCAGTC----ACCC-GCCCC--GCTCTCTCACAGAGG---CATTTAG-CC-G-TCAGTC------AAAG----TCTCT-CTCG-GGAGG--T-CTTT-------GATTGGGA-GG--TTA-TCGAAGAAGCTGGCGGT----A--CGC-GGA--CCCG------TCGA---C--CT-TTCG-AGG---AA--GA------TGGG--GGGCG-------GCCGT--GGGC--T-GGGGCA-GG-CTTTCTGATCGACG
#=GS KwoNew/10-269 DE NC_089956.1:c812804-812390 Kwoniella newhampshirensis strain CBS 13917 chromosome 2, whole genome shotgun sequence
KwoNew/10-269 ATTGAT-CATACTTT-GCAGGATT-TCTGTATAGTCACTGT-TCTTCTTTGCTAGTCCACACTAGCCACATTTTCCACGTCGAGGTGATGATCCAGTC----ACCC-GCCCC--GCTCTCTTACAGAGG---AATTTAA-CC-G-TCAATC-------GAG-T-GGGTCT-CTCG-GGATTT-T-CTC---TC---GGTTGGGA-GG--TTA-TCGAAGAAGCTGGCGGT----A--CGC-GGA--CCTG------TCGA---C--CT-TTCG-AGG---AA--GA------TGGG--GGGCG-------GCCGT--GGGC--T-GGGGTA-GG-CTTTCTGATCGACG
#=GS KwoHev/14-272 DE ASQC01000169.1:c7554-7140 Kwoniella heveanensis CBS 569 cont2.169, whole genome shotgun sequence
KwoHev/14-272 GATGAT-CATACTTT-GCAGGATT-TCTGTATAGTCACTGTCTCTTCTTTGCTAGTCCAAACTAGCCACATTTATCACGTCGAGGTGATGATAAAGT-----ACCC-GCTCC--GCTCTTTCACAGAGG--AAAT-TAG-CC-G---TTGC-C----CATT-----CCTT-TTAC-GGGG-----AATG--A----GCAA--GA-GG-TCTA-TCGAAGAAGCTGGCGGTC---T--CGC-GGA--CTCT---GTCCT----TC--CA-CTTG-TGGA------AGGAT-G-AGGG----GCG------GATCGT--GGGC--T-GGGGCGAGG-CTTTCTGATCGACG
#=GS KwoEur_2/15-277 DE NC_089488.1:c2929097-2928674 Kwoniella europaea PYCC6329 chromosome 2, complete sequence
KwoEur_2/15-277 ATTGAT-CATACTTT-GCAGGATT-TCTGTATAGTCACTGTCTCTTTTTTGCTAGTCCATACTAGCCACATTTTCCACGTCGAGGTGATGATAAAGTT----ACCC-ATCCG--GCTCTTTCACAGAGA---CATTTAG-CC-G---CTTC-C------CT---TTCTCT-CTCG-GGAGAA-T-AG---------GAAG--GA-GG--TTA-TCGAAGAAGCTGGCGATTC--A--CGT-GGA--CTC--A-TCTTT----AT--CC-CTTGTGGAT--TTC-GAAGA----GGG----ACG-----GAATCGT--GGGT--T-TGGATGTGG-CTTTCTGATCGACG
#=GS KwoPin_2/22-284 DE NC_091716.1:c835850-835430 Kwoniella pini CBS 10737 chromosome 1, complete sequence
KwoPin_2/22-284 ATTGAT-CATACTTT-GCAGGATT-TCTGTATAGTCACTGTCTCTTTTTTGCTAGTCCATACTAGCCACATTTTCCAAGTCGAGGTGATGAAAAAGTT----ACCC-ATCCT--ACTCTTTCACAGAGA---CATTTAA-CC-A---CTT--TT----TCTCT---TTAC-TTCG-GTAA---T-GGA---TTT---AGG---A-GG--TTA-TCGAAGAAGCTGGCGATTTC-T--CGT-GGA--CTC--A-TCTTT-----T--TC-TTCG-GAA---TTA-GAAGA----GGG----ACG----GAAATTGT--GGGT--T-TGGATGAGG-CTTTCTGATCGACT
#=GS KwoDej/19-277 DE ASCJ01000004.1:1656586-1657005 Kwoniella dejecticola CBS 10117 cont1.4, whole genome shotgun sequence
KwoDej/19-277 ATTGAT-CATACTTT-GCAGGATT-TCTGTATAGTCACTGTCTCTTTTTTGCTAGTCCATACTAGCCACATTTTCCACGTCGAGGTGATGATAAAGTT----ACCC-ATCCT--ACTCTTTCACAGAGA---CATTTAG-CC-C---TCT-------GACC-----CGGC-CTCG-GCTG-----GGTT--TT----GGG---A-GG--TTA-TCGAAGAAGCTGGCGATTTC-A--CGT-GGA--CTC--A-TCTTT-----T--TC-GTAA-GAA---TCA-GAAGA----GGG----ACG----GAAATTGT--GGGT--C-TGGATGAGG-CTTTCTGATCGACG
#=GS KwoDen_1/27-283 DE NC_089476.1:c2909984-2909552 Kwoniella dendrophila CBS 6074 chromosome 1, complete sequence
KwoDen_1/27-283 ATTGAT-CATACTTT-GCAGGATT-TCTGTATAGTCACTGTCTCTTTTTTGCTAGTCCATACTAGCCACATTTTCCACGTCGAGGTGATGATAAAGTT----ACCC-ATCCT--ACTCTTTCACAGAGG---AATTTAA-CC-G-TTTTTC-C-----A---A----TCT-TTCG-GGA----A---T--------GAAAAAGA-GG--TTA-TCGAAGAAGCTGGCGATTC--T--CGT-GGA--CTC--A--TTTT----AA--TC-TTCG-GATT--AA--GAAG-A---GGG----ACG-----GAATTGT--GGGT--T-TGGATGAGG-CTTTCTGATCGACG
#=GS KwoShi_1/19-287 DE NC_085908.1:c2674163-2673732 Kwoniella shivajii chromosome 1, complete sequence
KwoShi_1/19-287 ATTGAT-CATACTTT-GCAGGATT-TCTGTATAGTCACTGTCTCTTTTTTGCTAGTCCAAACTAGCCACATTTTCCACGTCGAGGTGATGATAAATAT----ACCC-ATCCG--ACTCTTTCACAGAGA---CATTTAA-CC-G-TCTTTTTC---CTTCTTT-----CC-CTCG-GG-----TTAGAGG----AAAAAGG-GA-GG--TTA-TCGAAGAAGCTGGCGGTTC--T--CGT-GGA--CTC--A---TTCTT--TT--CT-TTCG-AGAA--TT--GAA--AGA-GGG----ACG-----GAATCGT--GGGT--A-CGGATGCGG-CTTTCTGATCGACG
#=GS KwoBes_2/28-291 DE NC_089242.1:c2900229-2899815 Kwoniella bestiolae CBS 10118 chromosome 2, complete sequence
KwoBes_2/28-291 ATTGAT-CATACTTT-GCAGGATT-TCTGTATAGTCACTGTCTCTTTTTTGCTAGTCCATACTAGCCACATTTTCCACGTCGAGGTGATGATAAAGTT----ACCC-ATCCT--ACTCTTTCACAGAGA---CATTTAG-CC-G-TTTCC--TG-----TC-T--TCTCC-CTCG-GGGGA--TC-GG--------GAAGG--A-GG--TTA-TCGAAGAAGCTGGCGA----TTCTCGT-GGA--CTC--A--TCTCTT---T--CC-TTTT-GGA---TC--GAGA-AGA-GGG----ACGGTC-----TCGT--GGGT--T-TGGATGTGG-CTTTCTGATCGACG
#=GS KwoMan_1/24-287 DE NW_027062534.1:c3535330-3534906 Kwoniella mangroviensis CBS 8507 chromosome 1 map unlocalized Ctg02, whole genome shotgun sequence
KwoMan_1/24-287 ATCGACG-ATACTTTTGCAGGATT-TCTGTATAGTTACTGTCTCTTTTTTGCTAGTCCATACTAGCCACATTTTCCACGTCGAGGTGATGATAAAGTT----ACCC-ATCCT--ACTCTTTCACAGAGA---CATTTAG-CC-G--CTTC--C-----CT--T--TCTCT-TTCG-GGAGA--TT--AG-------GAAG--GA-GG--TTA-TCGAAGAAGCTGGCGATTC--A--CGT-GGA--CTC--A-TCTTT----AT--CC-CTCGTGGAT--TTA-GAAGA----GGG----ACG-----GAATTGT--GGGT--T-TGGATGTGG-CTTTCTGATCGACG
#=GS SaiPod/19-256 DE RSCD01000015.1:c529756-529415 Saitozyma podzolica strain DSM 27192 scaffold_15, whole genome shotgun sequence
SaiPod/19-256 ATCGACG-ATACTTT-GCAGGATT-TCTGTATAGTAAACGTC-CTTTTTCGCTAGTCTACACTAGCCACATTTTCCACGTCGAGTTGATGATCCAGTC-----CCC-GCCCG--GCTCTTTCACAGAGG---CATTTGG--C-G-A------------CCC-----GTCT-CTCG-GGAC------GGG--------------A-CG--CCA-TCGAGGAAGCTGGCGG-----T-GTCGT-----GCC-GA--GCTC------GACC-TTTG-GG----AA--GAGC-GA--GGT----CGAC-------CCGC--GGGC--T-CGGGCG-GG-CTCTCTGATCGACG
#=GS KocImp/7-237 DE NBSH01000010.1:c93173-92783 Kockovaella imperatae strain NRRL Y-17943 BD324scaffold_10, whole genome shotgun sequence
KocImp/7-237 CTAGAT-TATACTCTTGCAGGATT-TCTGTATAGTTAGTAT-TTATCTTTGCTAGTCTACACTAGCCACATTTTCCACATCGAGGGGATGATCCAGT-----ACCC-GCTCC--GCTCT-TCACAGAGA---CATCTTGACG--------------------T-----GC-TCCTCGC---------------------------CGT-CAA-TCGAAGAAGCTGGCAGGGA-----TCGTCAA---TCG-A---CTC-----T--TC--ACG-GG----TT--GAG-----CGA-----CGG-T---TTCCTGT--GGGCG-AT-GAGCG-GG-CTTTCTGATCGATG
#=GS DioHun/4-235 DE NW_026515766.1:c32347-32000 Dioszegia hungarica strain PDD-24b-2 chromosome Unknown MKK02contig_2, whole genome shotgun sequence
DioHun/4-235 ATCGTATCATACTCT-GCAGGAT-TTCTGTATAGTCACTG-TTCTCTTATGCTAGTCCACACTAGTCATAAATTCCACGTCGAGGCGATGATACAGT-----ACCC-GCTC-G-GCTCTCTTACAGAGG---CATTT---CC----------AG----A---T---CGCT--CTC--GGTG------T---GAC-----------GG----A-TCGAGGACGCTGGCGGTTGA-T--GTT--GA---GCTGA-----------G--CT-CTAG-GGC------------AA-GGC---AAGAC----TCGGCTGT--GGGC--A--GAGCG-GG-CTTTCTGATCGACG
#=GS NaeAub/12-243 DE JASGYU010000044.1:121659-121993 Naematelia aurantialba strain 25 NODE_44, whole genome shotgun sequence
NaeAub/12-243 AGCGGA-CATTCTCT-GCAGGATT-TCTGTATAGTTATTGTCTCGCTTTTGCTAGTCTACACTAGCCATACTATCCACGTCGAGGTGATGATCGAGTC-----CCC-GCCCC--GCTCTTTCACAGAGA---CCTCTGG----T--------C----GTCC------TTC--TC--GAG------GGAC-------------AG-----CCA-TCGAAGAAGCTGGCGG-----T--GTC---G---GCTGGA---TC-T--CT--T-CTCGGA-GAG--T---GA-----AGGC----TGGC--------CCGT--GGGCGGC---GGCG-GG-CTTTCTGATCGACG
#=GS TreFuc/9-259 DE BRDD01000065.1:c264195-263700 Tremella fuciformis NBRC 9317 DNA, KCNB80TF.65, whole genome shotgun sequence
TreFuc/9-259 GTCGAA-CATACTTT-GCAGGATT-TCTGTATAGTTAATGTCTCGTCTACGCTAGTCCAAACTAGCCTCCAATTCCACGTCGAGGTGATGATCTCC------ACCC-GCCCC--GCTCTTTCACAGAGG---CCTTTAGGCC----CGCC--GA---GCT------GTTC-TTCACGGAC------GGC--GAG--GGCG-----GGCACTA-TCGAAGAAGCTGGCGAC---GAA-TCT---G------ACA-------CCTT--TC-GAAA-GAGAGG--CG--------AGG--AC------GA---GTCGC--GAGCG-C--GGGCG-GGATATTCTGATCGACA
#=GS TreYok/9-258 DE BRDC01000043.1:c1525853-1525366 Tremella yokohamensis NBRC 100148 DNA, KCNB35TY.43, whole genome shotgun sequence
TreYok/9-258 TGCGAA-CATACTT--GCAGGATT-TCTGTATAGTTAATGTCTCGTCTACGCTAGTCCAAACTAGCCTCCAATTCCACGTCGAGGTGATGATCTCC------ACCC-GCCCC--GCTCTTTCACAGAGG---CCTTTAGGCC----TGCC--GA---GCT------GTTC-TTCACGGAC------GGC--GAG--GGCG-----GGCACTA-TCGAAGAAGCTGGCGAC---GAA-TCT---G------ACA-------CCTT--TC-GAAA-GAGGGG--CG--------AGG--AC------GA---GTCGC--GAGCG-C--GGGCG-GGATATTCTGATCGACA
#=GS CryGC6/16-257 DE JALPBY010000016.1:108310-108575 Cryptococcus sp. GC_Crypt_6 iso00_61_16, whole genome shotgun sequence
CryGC6/16-257 CATTGACCA-ACTCTTGCAGGATT-TCTGTATAGTTAATG-GTCTTCTTTGCTAGTCCACACTAGCCACATTTTCCACGTCGAGGTGATGATCCAGTC----ACCC-GCCCC--GCTCTTTCACAGAGA---CCA-ATTT---T--AGCC---------------CTTCC--TC--GGAAG----------CA---GGTT------AA-AT-TTCGAAGAAGCTGGCGA-----T-CCGC-ATA---CT--C--GTC-GA-CCT------CTCG-AGG--AA--GAC--G--AG----GAGCGA-G-----TCGT--GGGC--T-GGGGCA-GG-CTTTCTGATCGACG
#=GS CryGC4/25-257 DE JALPCA010001027.1:550-860 Cryptococcus sp. GC_Crypt_4 iso00_46_1063, whole genome shotgun sequence
CryGC4/25-257 AGCGAA-CATTCTCT-GCAGGAT-CTCTGTATAGTTAATGTCTCGACTTTGATAGGCTAAACTAGCCACATTTTCGACGTCGCGGTGATGATTTAGT-----ACCC-TCTTC--GCTCTTTCACAGAGA---CTTTTGG--C-----------------------CATCT-TTAG-GGATG----------T-------------G--ACCA-TCGAAGAAGCTGGCGAT----C--AAT------CGTC-AA--TCG-A-CCC-----TTTAT--GGG-CTG-TGA-----GATG----ATT-------GTCGT--GGGCG-T--AAGAG-GG-CTTTCTGATCGACG
#=GS TreTag/229-490 DE CAJHEQ010000573.1:c10105-9307 MAG: Tremellales sp. Tagirdzhanova-0007 genome assembly, contig: TREM_573, whole genome shotgun sequence
TreTag/229-490 ATCGACG-ATACTTC-GCAGGATT-TCTGTATAGTCATTGTCCGATTCTCGCTAGTCTACACTAGCCACATTTTCCACGTCGAGTTGATGATCTAGTC----CTCC-GCCCC--GCTCTTTCACAGAGA--ACTTTTCGTCC-T--GGGTG-C--ATTCTTT---TCCTC-GTCAAGAGGG--C-GAGAGTT----TATCC-C--GGA-CGA-TCGAAGAAGCCGGCGACC---T----------------GA-TCTG-GTTCT-----TCGAG--AGAAGCACCGGG-GA-------------T----GGTCGT--GGGCG-T--GGGCG-G-ACTTTCTGATCGACG
#=GS PapLau/215-449 DE JDSR01001049.1:c26364-25910 Papiliotrema laurentii RY1 contig_1086, whole genome shotgun sequence
PapLau/215-449 CTTGAC-CATATTCT-GCAGGAT-CTCTGTATAGTTATCGTCTCGTTTTTGCTAGTCTACACTAGCCACATTTTCCACGTCGAGGGGATGATCTAGTT-----CCC-GCCCC--GCTCTTTTACAGAGG--ACTT-TGG-CG-----------------------TTTTC-TTCG-GAAGA------------------------CG-ACCA-TCGAAGAAGCTGGCGG-----C-TGTT------TGTC-GA--GCT--GCTC----CTTTGC--GGGC----GGT--AA-GACG----AACA-------CCGT--GGGCG-C--GGGCG-GG-CTTTCTGATCGACG
#=GS PapTer/17-250 DE JAHXHD010000715.1:c3210-2840 Papiliotrema terrestris strain LS28 scaffold-714, whole genome shotgun sequence
PapTer/17-250 AGCGAA-CATACTTA-GCAGGATT-TCTGTATAGTTAATGTCTCGTTTTTGCTAGTCTACACTAGCCACATTTTCCACGTCGAGGGGATGATTTAGT-----ACCC-GCTCC--GCTCTTTCACAGAGA---CCTTTGG--C----------------CTC------GCC-CTCG-GGC------GGG---T-------------G--ACCA-TCGAAGAAGCTGGCGACA--GGA--GC---C------GAT-------CTAC--CC-CTTGTGGGTGG---------TG-------AAGC--CGA--TGTCGC--GGGCG-A--GAGCG-GG-CTTTCTGATCGACG
#=GS CryFla/124-357 DE CAUG01000664.1:c55558-55182 Cryptococcus flavescens NRRL Y-50378 WGS project CAUG00000000 data, contig NODE_2187_length_71177_cov_45_840343, whole genome shotgun sequence
CryFla/124-357 AGCGAA-CATACTCA-GCAGGATT-TCTGTATAGTAAATGTCTCGTTTTTGCTAGTCTACACTAGCCACATTTTCCACGTCGAGGGGATGATTTAGT-----ACCC-GCTCC--GCTCTTTCACAGAGA---CATTTGG--C----------------CTC------GCC-CTCG-GGC------GGG---A-------------G--ACCA-TCGAAGAAGCTGGCGACA--GGA--GC---C------GAT-------CTAC--CC-CTTGTGGGTGG---------TG-------ACGC--CGA--TGTCGC--GGGCG-A--GAGCG-GG-CTTTCTGATCGACG
#=GS BulAlb/19-257 DE CAMYTR010000032.1:c72896-72525 Bullera alba genome assembly, contig: jcf7180000012125, whole genome shotgun sequence
BulAlb/19-257 AGCGAA-CATACTTA-GCAGGATT-TCTGTATAGTTAATGTCTCGTCTTTGCTAGTCTACACTAGCCACATTTTCCACGTCGAGGTGATGATCTAGTC-----CCC-ACCCC--GCTCTTTCACAGAGA---CTTTTGG--T-------------------T--CGTTGC-TTCG-GCGACG-C-------T-------------A---CCA-TCGAAGAAGCTGGCGG------CGGTA----CGAGTCGAA--TCG----GC-----CTTGT--GT------TGA--CAAGACTTG--TACC-------CCGT--GGGCG-TT-GGGTG-GG-CTTTCTGATCGACG
#=GS TriOvo/16-250 DE WEIQ01000003.1:539947-540296 Trichosporon ovoides strain 2NF903A scaffold3-size1597232, whole genome shotgun sequence
TriOvo/16-250 TGAAGATCATACTAT--CAGGATTCTCTGTATAGTCACTGTCT-TTTCTCGCTAGTTCACACTAGCCACATTTTCCACGTCGAGGAGATGATCTAGTC-----CCC-TCCCG--GCTCTTTCACAGAGACCACTTTGCA--------------------------ACACC-TCCG-GGTGT----------------------C-----TGCTCCGAAGAAGCTGGCGGCGC--T-GGCA---------G-AA------C--CT-GAC-CCTCT-GTGG-AAA-GG------C-----GATGCC----GCACCGT--GGGC--T-CGGGAG-GG-CTTTCTGATCGACG
#=GS TriCor/19-254 DE JXYL01000018.1:c708008-707644 Trichosporon coremiiforme strain JCM 2938 scaffold_0018, whole genome shotgun sequence
TriCor/19-254 TGAAGATCATACTAT--CAGGATTCTCTGTATAGTCACTGTCT-TTTCTCGCTAGTTCACACTAGCCACATTTTCCACGTCGAGGAGATGATCTAGTC-----CCC-TCCCG--GCTCTTTCACAGAGACCACTTTGCG--------------------------ACACT-CTTGCAGTGT----------------------A-----CGCTCCGAAGAAGCTGGCGGCGC--T-GGCA---------G-AA------C--CT-GAC-CCTCT-GTGG-AAA-GG------C-----GATGCC----GCACCGT--GGGC--A-CGGGAG-GG-CTTTCTGATCGACG
#=GS TriAsa/18-253 DE NW_014040915.1:534469-534835 Trichosporon asahii var. asahii CBS 2479 unplaced genomic scaffold scaffold00009, whole genome shotgun sequence
TriAsa/18-253 TGAAGATCATACTAT--CAGGATTCTCTGTATAGTCACTGTCT-TTTCTCGCTAGTTCACACTAGCCACATTTTCCACGTCGAGGAGATGATCTAGTC-----CCC-TCCCG--GCTCTTTCACAGAGACCACTTTGCG--------------------------GCGCT-CTCGCAGCGT----------------------A-----CGCTCCGAAGAAGCTGGCGGCGC--T-GGCA---------G-AA------C--CT-GAC-CCTCT-GTGG-AAA-GG------C-----GATGCC----GCGCCGT--GGGC--A-CGGGAG-GG-CTTTCTGATCGACG
#=GS TriInk/10-244 DE JXYM01000007.1:564183-564535 Trichosporon inkin strain JCM 9195 scaffold_0007, whole genome shotgun sequence
TriInk/10-244 TGAAGATCATACTAT--CAGGATTCTCTGTATAGTCACTGTCT-TTTCTCGCTAGTTCACACTAGCCACATTTTCCACGTCGAGGAGATGATCTAGTC-----CCC-TCCCG--GCTCTTTCACAGAGACCACTCTGCA--------------------------ACACC-TCCG-GGTGT----------------------C-----TGCTCCGAAGAAGCTGGCGGCGC--T-GGCA---------G-AA------C--CT-GAC-CCTCT-GTGG-AAA-GG------C-----GATGCC----GCGCCGT--GGGC--A-CGGGAG-GG-CTTTCTGATCGACG
#=GS CugtOle_01/14-235 DE NW_027072170.1:4099040-4099374 Cutaneotrichosporon oleaginosum strain ATCC 20508 chromosome Unknown ATCC20508_contig01, whole genome shotgun sequence
CugtOle_01/14-235 AGTGAC-CACACTCT-GTAGGAT-CTCTCTACAGTAACCGT-TCACTCTCGCTAGTTCACACTAGCCACATTTTCCACGTCGAGGCGATGATATAGC------CCC-TCGCC--GCTCT-TCACAGAG----TACTTG--------------------TC--C----CCG-GCCT-CGG----A---GA---------------------CA--CGAAGAAGCTGGCG------T-G------A-CGCTG-GAT-CCC------AACC-GAAA-GG----GA--GGG--TGACGGT--T--G----A----CCGT--GGGCG-C--GCGAG-GG-CTTTCTGATCGACT
#=GS CugtOle_06/8-221 DE NW_027072175.1:297527-297917 Cutaneotrichosporon oleaginosum strain ATCC 20508 chromosome Unknown ATCC20508_contig06, whole genome shotgun sequence
CugtOle_06/8-221 AGTGAC-CACACTCT-GTAGGAT-CTCTCTACAGTAACCGT-TCACTCTCGCTAGTTCACACTAGCCACATTTTCCACGTCGAGGCGATGATATAGC------CCC-TCGCC--GCTCT-TCACAGAG----TACTTG--------------------TCT-----------CC------------GGA---------------------CA--CGAAGAAGCTGGCGG-----G--------A-CGCTG-GC-GCCT------GACC-GAAA-GG-----GA-GGGC-AA-CGGC--C--G----A----CCGT--GGGCG-C--GCGAG-GG-CTTTCTGATCGACT
#=GS CutCav_5/26-239 DE NC_083397.1:2702910-2703315 Cutaneotrichosporon cavernicola HIS019 DNA, chromosome: 5
CutCav_5/26-239 AGTGAC-CACACTCT-GTAGGAT-CTCTCTACAGTAACCGT-TCACTCTCGCTAGTTCACACTAGCCACATTTTCCACGTCGAGGAGATGATATAGC------CCC-TCGCC--GCTCT-TCACAGAG----TACTTG--------------------TCC-----------CT------------GGA---------------------CA--CGAAGAAGCTGGCGG-----G--------A-CGCTG-GC-GCTC------GACC-GCAA-GG-----GA-GAGC-AA-CGGC--C--G----A----CCGT--GGGCG-T--GCGAG-GG-CTTTCTGATCGACT
#=GS VanFra/124-360 DE BEDY01000008.1:19435-19809 Vanrija fragicola DNA, scaffold: scaffold_8, strain: JCM 1530, whole genome shotgun sequence
VanFra/124-360 AGCAGT-CATACTCT-GTAGGAT-CTCTCTACAGTTTACGTCTCTTTCTCGCTAGTTCATACTAGCCACATTTTCCACGTCGAGGCGATGATACAGTC-----CCC-TCCCG--GCTCTCTTACAGAGG--CCCGA--G------------------CCCA----CTGCT-TTCG-AGCTT----TGGG-------------A------C---GCGAAGAAGCTGGCGGCGC---T--GG--A-----C-AAA--CCCGA-CCC-----CGCGT--GGG-AA--GGG--CGA-G----A-CC------GCACCGT--GGGC--A-CGGGAG-GG-CTTTCTGATCGACG
#=GS VanAlb/15-245 DE NW_027191423.1:c2674622-2674371 Vanrija albida strain AlHP1 chromosome Unknown contig_4, whole genome shotgun sequence
VanAlb/15-245 ATGTGTCTATACTCA-GTAGGAT-CTCTCTACAGTATACGTCTCATTCTCGCTAGTCTACACTAGCCACATTTTCCACGTCGAGGCGATGATCTAGC------CCC-TCCCG--GCTCTCTTACAGAGG---------------------------ACCCGG--GCGC-----GTGCTTGCA-CGTCCCA-----------------------TCGAAGAAGCTGGCGGC----G--GGC-GA---GTCCGAA---------CC--CC-TCTC--GGGG-CGA-GGGC----------GAGCC-G-----GCCGC--GGGC--T-CGGGAG-GG-CTTTCTGATCGACT
#=GS VanPse_4/8-242 DE NC_085852.1:2555032-2555276 Vanrija pseudolonga chromosome 4, complete sequence
VanPse_4/8-242 ATGTGTCTATACTCA-GTAGGAT-CTCTCTACAGTATACGTCTCATTCTCGCTAGTTCATACTAGCCACATTTTCCACGTCGAGGTGACGATCTAGC------CCC-TCCCG--GCTCT-TCACAGAGG---------------------------ACCGCG--GGGCGTGCGCGCAAGCGC-ACGCCCA-----------------------TCGAAGAAGCTGGCGGTG---G---GC-GAG---TCGGAC---TC-CTCTC-----GGGG--GGGA-C---GA------CGA-----GC--A----CGCCGC--GGGC--T-CGGGAG-GG-CTTTCTGATCGACG
#=GS VanPse_5/19-254 DE NC_085853.1:c562499-562242 Vanrija pseudolonga chromosome 5, complete sequence
VanPse_5/19-254 ATGTGTCTATACTCA-GTAGGAT-CTCTCTACAGTATACGTCTCATTCTCGCTAGTTCATACTAGCCACATTTTCCACGTCGAGGCGATGATCTAGCC-----CCC-TCCCG--GCTCTCTTACAGAGG--ACCCCGAG------------------CGTC-------GC-TCCC-GC-------GACG-------------T------CTCATCGAAGAAGCTGGCGGCG---A---GG--A-----C--GA-GCCCGA-CCC-----CCTGT--GGG-AA--GGGC-GA--G----G-CC--G----CGCCGT--GGGC--T-CGGGAG-GG-CTTTCTGATCGACG
#=GS VanHum/28-259 DE QKWK01000007.1:1135120-1135373 Vanrija humicola strain CBS 4282 CBS4282_scaffold07, whole genome shotgun sequence
VanHum/28-259 ATGTGTCTATACTCA-GTAGGAT-CTCTCTACAGTATACGTCTCATTCTCGCTAGTTCATACTAGCCACATTTTCCACGTCGAGGCGATGATCTAGCC-----CCC-TCCCG--GCTCTCTTACAGAGG--ACCCCGAG------------------CGTC----------TTCG----------GACG-------------T------CTCATCGAAGAAGCTGGCGGCG---A---GG--A-----C--GA-GCCCGA-CCC-----CCTGT--GGG-AA--GGGC-GA--G----G-CC--G----CGCCGT--GGGC--T-CGGGAG-GG-CTTTCTGATCGACG
#=GS CrySki/14-274 DE BCHT01000022.1:143205-143564 Cryptococcus skinneri DNA, scaffold: scaffold_21, strain: JCM 9039, whole genome shotgun sequence
CrySki/14-274 TCATGATCATATTCT-GCAGGATT-TCTGTATAGTTAATGT-TCATTTTCACTAGTTTACACTAGTCACATTTTCCACGTCGAGGGGATGATATAGTC-----ACC-CCCC-T-ACTCTTTCACAGAGA---CTTTTGG------GTTCTT---ATCGCCC----CCTTCTCTTCTGGGGG--T-GGGTGG---TAAGAAC--------CCA-TCGAAGAAGCTGGCGA------T-CCG------ATTG-AA---TT--TTCGAGCT-CTCG-AGCGAG----GG---AA-CGAT--ATCGG--------TCGT--GGGT--CT-GGGGG-GT-CTTTCTGATCGACG
#=GS TreMes/18-270 DE SDIL01000112.1:c62358-61884 Tremella mesenterica strain ATCC 28783 supercont1.112, whole genome shotgun sequence
TreMes/18-270 AGATAGACCAACTTT-TCAGGATT-TCTGTATAGTTATCGTCTCGTCTTTGCTAGTCCACACTAGCGACAAATTCCACGTCGAGGTGATGATCACCC------CCC-GCTCC--GCTCTCTCACAGAGG---CCTTTGG-AC----CCGTG-T---TTTGT---CATTTC-TTTT-GAGGTG-A-ACGAA------TGTGG----GT--CTA-TCGAAGAAGCTGGCGAC---GAA-TCT---G----AC-------C--TTTT-----CGAA---AGAA----G----A--GT----GAGGA-CGA---GTCGC--GGGCG-A--GGGCG-GG-ATTTCTGATCGACG
#=GS CryGC1/22-281 DE JALPCD010001213.1:c1616-1238 Cryptococcus sp. GC_Crypt_1 1213, whole genome shotgun sequence
CryGC1/22-281 AACGA-ACATACTTTT-CAGGAT-CTCTGTATAGTACACATGTC-GTTTTGCTAGTCTACACTAGCCACATTTTCCACGTCGAGGTGATGATCTAGTACCTTACACAACCCC--GCTCTTTCACAGAGA---CCT-TTC------TTCCT--TT-GCTCGG--GCTGCTC--TC--GGGTGGT--TTGGGC----AGGAA---------GGA-TCGAAGAAGCTGGCGAAGA-GA-CGGT--------C--G--ACTC---GCT-----TTCG---GGC---T-GGGT-G--GACTG-GA--------TCTTCGT--GGGCG-T--GGGTGG-G-CTTTCTGATCGACG
#=GS CryGC3/18-274 DE JALPCB010000066.1:c65648-65367 Cryptococcus sp. GC_Crypt_3 iso00_45_66, whole genome shotgun sequence
CryGC3/18-274 CATGAT-CAAACTCT-GCAGTATCTAATAATACAGCGAATGATCTTTCTTGCTAGTCCACACTAGCCACATTTTCCACGTCGAGGTGATGATCCAGTC----ACCC-GCCCC--GCTCTTTCACAGAGA---CCT--TTT------AGCC------CTTCG--CCTCCTC-GCGA-GAGGAGGT-CGGAG-C----GGT----C-GAAT---TTCGAAGAAGCTGGCGA-----T-CCGC-ATA---CT--C--GTC-GA-CCT------CTCG-GGG--AA--GAC--A--AG----GAGCGG-C-----TCGT--GGGC--T-GGGGCA-GG-CTTTCTGATCGACG
#=GS NaeEnc/33-269 DE MCFC01000048.1:c73938-73670 Naematelia encephala strain 68-887.2 BCR39scaffold_48, whole genome shotgun sequence
NaeEnc/33-269 AGTGAT-TATGCTTC-GCAGGATT-TCTGTATAGTATATATCTCACTTTTGCTAGTCTACACTAGCCACACTATCCACGTCGAGGTGATGATCGAGTC-----CCC-GCCCC--GCTCTTTCACAGAGA---CTTTTGG----T--------C----GTTC-C----TCC-TTGTTGGG------GAAC-------------AA-----CCA-TCGAAGAAGCTGGCGG----TT--GTT---G---ATTGGA---TC-T--CT--CT-TCGG-GGAG--T---GA---A--GGT---C-AAC--------CCGT--GGGCGGC---GGCG-GG-CTTTCTGATCGACG
#=GS TreEnc/1-235 DE Tremella encephala Small nucleolar RNA U3 URS0000D98D81_71784
TreEnc/1-235 -GTGAT-TATGCTTC-GCAGGATT-TCTGTATAGTATATATCTCACTTTTGCTAGTCTACACTAGCCACACTATCCACGTCGAGGTGATGATCGAGTC-----CCC-GCCCC--GCTCTTTCACAGAGA---CTTTTGG----T--------C----GTTC-C----TCC-TTGTTGGG------GAAC-------------AA-----CCA-TCGAAGAAGCTGGCGG----TT--GTT---G---ATTGGA---TC-T--CT--CT-TCGG-GGAG--T---GA---A--GGT---C-AAC--------CCGT--GGGCGGC---GGCG-GG-CTTTCTGATCGAC-
#=GC SS_cons ----------(((-(-(((((----))))))-)))---------------((((((----))))))-----------<<<<<<--------------------[[[-[[[[[--[[[[[[----------------(((((((--(((((((--(((((((--(((((((------)))))))--))))))---))))))))--))))-)))-------------((((((((---((((----((((((---(((((--((((--((------))))))----)))))---))))))--))))---))))))))--]]]]]]--]]]]]]-]]--------->>>>>>
//
Image source U3 model for fungi related to S. cerevisiae:
# STOCKHOLM 1.0
#=GF WK Small_nucleolar_RNA_U3
#=GF NC 91.8
#=GF RT Comparative analysis of eukaryotic U3 snoRNA.
#=GF TC 96.1
#=GF CL CL00100
#=GF RN [3]
#=GF RM 19875933
#=GF RL RNA Biol. 2010;6:503-507.
#=GF AU Marz M; 0000-0003-4783-8823
#=GF CC and are necessary for the rRNA processing functions of U3 snoRNA.
#=GF CB cmcalibrate --mpi CM
#=GF DR snoopy; Homo_sapiens300287;
#=GF ID Fungi_U3
#=GF SS Published; PMID:19875933
#=GF RA Marz M, Stadler PF
#=GF SQ 66
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 20.23 -Z 549862.597050 CM SEQDB
#=GF DE Fungal small nucleolar RNA U3
#=GF AC RF01846
#=GF SE Published; PMID:19875933
#=GF GA 95.0
#=GF BM cmbuild -F CM SEED
#=GF TP Gene; snRNA; snoRNA; CD-box;
X05499.1/123-455 -UAAC-ACAUU--CUA----CAGUAGGA-UCAUUUCUAUAGGAA-UC-GU-CAC-----UCU--UUGACUCUU-CAA--AAGAGCCACUGAAUC---CAACUUGGUUGAUGAGUCCCA--UAACC-UUUGUACCC--CAGAGUGAGAAACCG--------AAAUUGA------AUCUAAAUU------------------------AGCUUGGUCCGCAAUCCUUAGCGGUUCGGCCAUCU-----AUAAUUUUGAAUAAAAAUUUUCU---------U------------UGCCGUUGCA--------------UUUGUAGUUUUU-U-C----------------------------------CUUUG------------------------------------------GAAGUAAUU-ACA-AU-------AUUUUAUGGCG-----------------------CGAUGAUCUUGACCCAU--------CCUAUGU--ACUUCUUU---UUUG---AAGG----G--AUAGGGC------------------------------------------------UCUA-UGGGUGGGUACAAAUGGC--AGUCUGACAAGU
M18578.1/157-489 -UAAC-ACAUU--CUA----CAGUAGGA-UCAUUUCUAUAGGAA-UC-GU-CAC-----UCU--UUGACUCUU-CAA--AAGAGCCACUGAAUC---CAACUUGGUUGAUGAGUCCCA--UAACC-UUUGUACCC--CAGAGUGAGAAACCG--------AA-----AUGA--AUCUAAAUU------------------------AGCUUGGUCCGCAAUCCUUAGCGGUUCGGCCAUCUA----UAAUUUUGAAUAAAAAUUUUGCU---------U------------UGCCGUUGCA--------------UUUGUAGUUUUU-U-C----------------------------------CUUUG------------------------------------------GAAGUAAUU-ACA-AU-------AUUUUAUGGCG-----------------------CGAUGAUCUUGACCCAU--------CCUAUGU--ACUUCUUU---UUUG---AAGG----G--AUAGGGC------------------------------------------------UCUA-UGGGUGGGUACAAAUGGC--AGUCUGACAAGU
M26648.1/338-671 -UAAC-ACAUU--CUA----CAGUAGGA-UCAUUUCUAUAGGAA-UC-GU-CAC-----UCU--UUGACUCUU-CAA--AAGAGCCACUGAAUC---CAACUUGGUUGAUGAGUCCCA--UAACC-UUUGUACCC--CAGAGUGAGAAACCG--------AAAUUGA------AUCUAAAUU------------------------AGCUUGGUCCGCAAUCCUUAGCGGUUCGGCCAUCUA----UAAUUUUGAAUAAAAAUUUUGCU---------U------------UGGCGUUGCA--------------UUUGUAGUUUUU-U-C----------------------------------CUUUG------------------------------------------GAAGUAAUU-ACA-AU-------AUUUUAUGGCG-----------------------CGAUGAUCUUGACCCAU--------CCUAUGU--ACUUCUUU---UUUG---AAGG----G--AUAGGGC------------------------------------------------UCUA-UGGGUGGGUACAAAUGGC--AGUCUGACAAGU
AJ507112.1/1-294 -GUCG-ACGUA--CUU----C-AUAGGA-UCAUUUCUAUAGGUC-AC-GU-CCC-----UCU--UUGACUCUU-CAA--AAGAGCCACUGAAUC---CAACUUGGUCGAUGAGUGAGA--UA-CC-CUUACACCC-UCAAAGUGAGACUAUA--------UUU--AG---C--UU-------------------------------------GACUGUGAUCCUUAGCGGUCUG-------------------GUCAUCUACCUAUUUU---------U------------UGCCUUUUAG-------------UUAUAAGACUU-G-G-A-----------------------------------UUUA------------------------------------------UCCUGUGUC-U---U---------UUAAAAGGAG-----------------------CGAUGAUCUUGACCCCU--------UUCUUCA--U--ACUUC---UUCG---GAGG----UUUUAGAU-----------------------------------------------------U-GGGGUGGGUGUAAGUGGC--AGUCUGACAAGU
X05498.1/323-655 -UAAC-ACAUU--CAA----CAGUAGGA-UCAUUUCUAUAUUAA-UC-GU-CAC-----UCU--UUGACUCUU-CAA--AAGAGCCACUGAAUC---CAACUUGGUUGAUGAGCCCCA--UAACC-UUUGUACCC--CAGAGUGAGGAAAUG-------A-AAUCGA------AUUUAAAUU------------------------AGCUUGGUCCGCAAUCCUUAGCGGUUCGGCCAUCU-----AUAAUUUUGAAUAAAAUUUUGCU---------U------------UGCCGUUGCA--------------AUUGUGAUAACU-U-C----------------------------------CUUUG------------------------------------------GAAUUUGUU-GCG-AU-------AUUUAAUGGCG-----------------------CGAUGAUCUUGACCCAU--------CCUAUGU-----GCUUCCAUUUUG---GAAG----G--AUAGGGA------------------------------------------------UUCA-UGGGUGGGUACAAAUGGC--AGUCUGACAAGU
HQ329066.1/118-440 -GUCG-ACGUA--CUU----C-AUAGGA-UCAUUUCCAUAGGUC-GC-GU-CCC-----UCU--UUGACUCUU-CAA--AAGAGCCACUGAAUC---CAACUUGGUUGAUGAGUGAGA--UUACC-CUUAUACCC-UCAAAGUGAGAUAAUA--------AC-----AUGA--AAUUUUUUGCUUGACCG-------UGAUUCUUUGCAAUCUGG-----------CCAUC-------------------------UACUUAUAAUGUU---------U------------UGCCUUUAAC--------------UUUUUUUUGAUG-C--UAAC-------------------------CUANU------CAUA-------------------------------GGUGA-UGCAUUUAA-UAU-U---------UAUAAAGGAG-----------------------CGAUGAUCUUUACCCUU--------UUCAU----UGUGCCUU---CUAG---GAGG----AUUUUGAA-----------------------------------------------------U-UGGGUGGGUAUAAGUGGC--UGUCUGACANGU
Z78433.1/167-580 -UAAC-ACAUU--CUA----UAGUAGGA-UCAUUUCUAUAGGAA-UC-GU-CAC-----UCU--UUGACUCUU-CAA--AUGAGCCACUGAAUC---CAACUUGGUUGAUGAGCCGCA--UAACC-UUUGUACCC--UAGAGUGAGAAACAU--------AC-----UUCC--GAAGUUGACGCCUCUCCCGC-AAGGGAGAUAUAGUUUGGUUCCGUAAUCCUAAGCGGUUCGGUCAUCUGUACUGUCUCUUCAAAACCCCUUGCGUU---------U------------UGCUGUUUGC--------------GUAUGCCCGUUA-U-ACA------------------------------AGUUUACU----------------------------------------UGGAAAUGGG-CUG-U---------UAAAAUGGCG-----------------------CGAUGAUCUUUACCCAU--------CAUGUAU-ACUUCU------CUCAGUGGAAG-----GAACAUGUGUUUUAUGGCCUAGGAGUUGAGUGUCUUGGACAUGAAUUCUCUGUUCAGGGUC-UGGGUGGGUACAAAUGGC--AGUCUGACAAGU
X91005.1/72-372 -UGUG-CCU------A----UAGUAGGA-UCAUUUCUAUAGUUU-AC-GU-CCC-----UCU--UUGUCUCUU-CUA--AAGAGCCACUGAAUC---CAACUUGGUUGAUGAGGUAUA--UA-CC-UUUGUGCCC--UAGAGUGAGAUUAAAC-----UU--U---C------AUUUAGCUUGUCUAU-----------AAUCCUUUGCGGUUUA-----------GUCAUCU----------------------AUUCUUUGAAGUUU---------U------------UGCCUUUUUU--------------GUUUAUUCCUGA-U-U----------------------------------AUUAUCCUUG-------------------------------UGAUAUUGUCAUGGA-UGU-CU-------UAUAAAAGGAG-----------------------CGAUGAUCUCGACCCUA--------UCUAUG-----CACUUU---UUCG---AAAG-----GGAUAGA-----------------------------------------------------UGUGGGUGGGUGCAAAU-----------------
EU526092.1/80-340 ---------AC--CAA----CAGGAGAA-UCAUUUCUAUAGUAU-UU-GU-CCUC---UUUU--GUGUUCCCU--AA--AGGAGCCACAGAUCC---CACCCGGGUUGAUGAACU--A--UAUCC-UCGUUUCCC--AACAGUGAGGUCCCU--------UU-----UA---------------------------------------------------------------------------------------------UUUUACU---------C------------UCGCUCUGCCUGAA------AAGGUGGCGAUCUUGC---------------------------------------UUCAC----------------------------------------U--GCAUGAU-UGU-A---------UAGAGAGUGG-----------------------CGAUGAUCUGUACCCCGAU----UUCCCAA----GGUCUGCC---UUCG---GGCG----C--UUGGG-----------------------------------------------------C-GGGGUGGGUUUCGAUGGA--AGUCUGACCGG-
EU526096.1/108-373 ---------AC--CAA----CAGGAGAA-UCAUUUCUAUAGUAU-UU-GU-CCUC---UUUU--GUGUUCCCU--AA--AGGAGCCACAGAUCC---CACCCGGGAUGAUGAACU--A--UAUCC-UCGUUUCCC--AACAGUGAGGUCCUU--------UU-----U-------------------------------------------------------------------------------------------------AUUU---------U------------UUACUCUCGUCUUGCCUGCAAAGGU---GGCGAUCU-G-C----------------------------------UUUAUA----------------------------------------AGUAGAU----UGU-A---------UAGAGAGUGG-----------------------CGAUGAUCUGUACCCCGAUUUUUUU--CUCAA--GGUCUGCC---UUCG---GGCG----CUU--GGG-----------------------------------------------------C-GGGGUGGGUUUCGAUGGA--AGUCUGACCGG-
X56189.1/89-342 -AUCG-ACGAU--ACU----CCAUAGGA-UCAUUUCUAUAGUAU-AC-GU-CCG-----GCU--UGGGUUUCC-UAA--CCUAGCCACAGAACU---CAACACGGAUGAUGAUAGAAG----GCA-CCGUUGCCC-GCAGAGUGAGAAUUUU--------UA-----CUU---------------------------------------------------C---------------------------------------------U----------U------------UGAGGAUGUG-------------CUGAUCGAUUUGG---C----------------------------------UUUUU------------------------------------------G-CUUAAUU-GUU-G--------UGCUAUCUUU-AU------------------UUGCGAUGAUCUCUUACAUG--------AUAUG-U-------UCC---UUUU---GG--------UCGUGU-----------------------------------------------------C-AUGUAGGGCAGCUGGUGU--UUUCUGACGUGU
X13850.1/316-569 -CGUA-UCGAU--ACU----CCAUAGGA-UCAUUUCUAUAGUAU-AC-GU-CCU-----UCU--UGGGUUUCC-UAA--CCUAGCCACAGAAGU---GAACACGGAUGAUGAUAGGAG--GCACC-GUUG--CCU--CAGAGUGAGGACUUU--------UA-----AUU---------------------------------------------------CU----------------------------------------UUGAAG---------G------------CAUGCUUUUC--------------GAUU------AG-G-U----------------------------------UUUUU------------------------------------------ACCUAAUU-------GUUUUGCUGUCAGAGUAUG-----------------------CGAUGAUCUCUUACAUG--------AUAUGUU--U-----CC---UUUU---GG--------UCGUAU-----------------------------------------------------U-AUGUAGGG--CAGCUGGUGUUUUCUGACGUGU
EU526093.1/1-192 ----------------------------------------------------------------------------------------------------CCGGGUUGAUGAACU--A--UAUCC-UCGUUUCCC--AACAGUGAGGUCCCU--------UU-----UA---------------------------------------------------------------------------------------------UUUUACU---------C------------UCGCUCUGCCUGAA------AAGGUGGCGAUCUUGC---------------------------------------UUCAC----------------------------------------U--GCAUGAU-UGU-A---------UAGAGAGUGG-----------------------CGAUGAUCUGUACCCCGAU----UUCCCAA----GGUCUGCC---UUCG---GGCG----C--UUGGG-----------------------------------------------------C-GGGGUGGGUUUCGAUGGA--AGUCUGACCGG-
EU526095.1/1-182 -----------------------------------------------------------------------------------------------------GCGGUUGAUGAUCA--A--UAUCC-UCGGCGCCC--AACAGUGAGGUCCUU-------------------------------------------------------------------------A------------------------------------UUUACUC----------------------UCGCUCUGCCUGC-------AAAG----GUGGC-------GG-----------------------------UCGCUUCAC----------------------------------------G--GCGAUUG---U-A---------UAGAGAGUGG-----------------------CGAUGAUCUGUACCCCGAU----UUCCAGAG----GUCUGCC---UUCG---GGCG------CUUUGG-----------------------------------------------------C-GGGGUGGGUGUCGAUGGA--AGUCUGACGC--
ACIW01002196.1/621-842 -AGCG-CAGUA--CUU----CA-UAGAA-UCAUUUCUAAUAGUA-UG-CA-UCCUU-CUCUG--A-GUUACU--CUA---AGUAGCCACAGAAUCUCCAUCCUGGUUGAUGACUAUCA----GCC-UCGAUGUCC--CGGAGUGAGGCCUUA--------UUUACGACU---------------------------------------------------GC------------------------------------------------------------------------------------------------------------------------------------------------UUCG----------------------------------------------------------------------------GCGGU-------------CGUGGCGAUGAUCUUCAGCUAA--------CCGG-----CUGUGUAC---UUCG---GU-CA--CA---CCGG-----------------------------------------------------A-AGGCAGGACGUUGAUGGC--AAUCUGACAGGC
AACG02000145.1/3310-3640 ---UA-ACACA--UUCA--ACAGUAGGA-UCAUUUCUAUAGGAA-UC-GU-CAC-----UCU--UUGACUCUU-CAA--AAGAGCCACUGAAUC---CAACUUGGUUGAUGAG-CCCA--UAACC-UUUGUACCC--UAGAGUGAGA--------------------AAUUGAAAUUAAUCUAA-------------------AUUAGCUUGGUCCGCAAUCCUUAGCGGUUCGGCCAUCU-----AUAAUUUUUAACAAAUUUUGCUU----------------------UGCCGUUGCA--------------UUUGUAAUUUCU-U-C----------------------------------CUUUG------------------------------------------GAAGCUUUU-ACG-AU-------CUUUAAUGGCG-----------------------CGAUGAUCUUGACCCAU-------------CCUAUGUACUUC---CUUUUUGGAAGGGAUAGGGCUUC-----------------------------------------------------A-UGGGUGGGUACAAAUGGC--AGUCUGACAAGU
AAGI01000148.1/11337-11557 -GCUG-CAGUA--CUU----C-AUAGAA-UCAUUUCUAU-AGUU-AGUCG-UCCUC-UUCUG--A-GCUUCU--CAA---AAAAGCCACAGAUUCUCCAACCUGGUUGAUGAGUUUCA----GCC-CCGAUGUCC--CGGAGUGAGGCCUUA---------UUACGAUU---------------------------------------------------GC------------------------------------------------------------------------------------------------------------------------------------------------UUCG----------------------------------------------------------------------------GCAAA-------------CGUGGCGAUGAUCUUCAGCCAA--------CUGG-----UCUCGUAC---UUCG---GU-CG--AG---CUGG-----------------------------------------------------A-CGGCAGGACGUUGGUGGC--AAUCUGACAGGC
AAHF01000006.1/1528382-1528680 ----U-ACUAC--AGU----UC--AAAGAAUCACUUUAGAGUAG-AC-GU-CCCAC-CUCUG--A-GCUCUU-CUA----AAGAGCCACAGAAUCUCCACCCUUGCUGAUGACUGCUA--UGUCC-UCGAUGCCC--UAAAGUGAAGCCGUU--------CUUACUCC-----------------------------------------------------C-----------------------------------------------GAUU-CGACC------------UUGCUUCG-U-------------UCCGACGCUCUGA---ACGAC--------------------------UUGUUGCAAAACAA--------------------------------GCUUGU-UCGGGCU-GUU-G--------GAUGUUGCUCUGGUCCAG---------GGAGUGGUGAUGAUCUUGACCUUG--------UCCUGAC--GUCUAGAC---UUCG---GUCG-----GUC-GGA-----------------------------------------------------C-UUGGUGGGUGUCGA-GGA--GGUCUGAAAGGU
AACM02000135.1/152192-152462 -GUCG-ACAAU--ACU----UCAGAGAA-UCAUUUCUAUAGUAU-UC-GA-CCUU---CUCU---UGGUUCC-CUAA--AAGAGCCACAGAUCC---CACCCUGGUUGAUGAGUG-UA--UAUCC-UCGACACCC--UAGAGUGAAUACC-UU-----GGUCCUCUCGCCC----------------------------------------------UAUCCGCAA-------------------------------------GGAUGG---------------------------------------------------------C-G-GUGG---------------------------CUGUCUCGUGCA-----------------------------------GCUGCUGU------------------------------AUAGAGAGUU---UGUUUCCUCUUGAUGAUCUCGACCCCA--------GCUGUG----GUCUGCC---UUCG---GGCG------CGUGGC-----------------------------------------------------U-GGGGUGGGUGUUGAUGGA--CGUCUGACAGGC
AABZ01000565.1/2656-2989 -UAAC-ACAUU--CUA----CAGUAGGA-UCAUUUCUAUAGGAA-UC-GU-CAC-----UCU--UUGACUCUU-CAA--AAGAGCCACUGAAUC---CAACUUGGUUGAUGAGCCCCA--UAACC-UUUGUACCC--CAGAGUGAGG--------------------AACUAAAAUUAAAUCUAA------------------AUUAGCUUGGUCCGCAAUCCUUAGCGGUUCGGCCAUCUA---UAAUUUUGAAUCAAAAUUUUGCUU----------------------UGCCGUUGCA--------------UUUGUAAUUUCU-U-C-----------------------------------UUCG------------------------------------------GAAGUUAUU-ACG-AU-------AUAAAAUGGCG-----------------------CGAUGAUCUUGACCCAU-------------CCUAUGUACUUC--C-UUUUUGGAAGGGAUAGGGCUUC-----------------------------------------------------A-UGGGUGGGUACAAAUGGC--AGUCUGACAAGU
AAFO01000024.1/12981-13296 -GUCG-ACGUA--CUU----C-AUAGGA-UCAUUUCUAUAGGUC-AC-GU-CCC-----UCU--UUGACUCUU-CAA--AAGAGCCACUGAAUC---CAACUUGGUUGAUGAGUGAGA--UUACC-CUUGUACCC-UCAAAGUGAGAAAU-----------------AACAUGAAAUUUU---------------------------UGCUUGACUGUGAUUCUUUGCAAUCUGGU---------------CAUCUACUUAUA-AUGUU---------U------------UGCCUUUGACUU---------GAUGCUAGCCUUUCU-U-U-----------------------------------UUUG------------------------------------------AAGGUAAUG-C-A-GCU-----AUUAUAAAGGAG-----------------------CGAUGAUCUUUAUCCUU--------UUCA----UUGUGCCUU---CUAG---GAGG---AU-UUUGAA-----------------------------------------------------U-UGGGUGGGUACAAGUGGC--UGUCUGACAAGU
AAKD03000017.1/74657-74959 --ACU-GCCAC--AGU----UC--AAAGAAUCACUUUAGAGUAG-AC-GU-CCCAC-CUCUG--A-GCUCUU-CUA----AAGAGCCACAGAAUCUCCACCCUUGCUGAUGACUGCUA--UGUCC-UCGAUGCCC--UAAAGUGAAGCCGUU--------CUUACUCC-----------------------------------------------------C-----------------------------------------------GCCU-CGACC------------C------CGCGGC--------GCUCCGACGCUCACA---ACGAU-------------------------UCUGUCGCAAGACGG-------------------------------AGUCUGU-UUGGGCU-GUU-GGUU---GCUGCG-----AUGGUCCAG---------GGAGUGGUGAUGAUCUUGACCUUG--------UCCUGAC--GUCUUGAC---UUCG---GUCG-----GUC-GGA-----------------------------------------------------U-UUGGUGGGCGUCGA-GGA--GGUCUGAAAGGU
AAIM02000163.1/33709-33987 -GUCG-ACAAU--ACU----UCAGAGAA-UCAUUUCUAUAGUAU-UC-GA-CCUU---CUCU---UGGUUCC-CUAA--AAGAGCCACAGAUCC---CACCCUGGUUGAUGAAUG-AA--UAUCC-UCGAUGCCC--UAGAGUGAAUACCCCUUUUCUGGUCCUCUCGAUC----------------------------------------------UGUCCGCAA-------------------------------------GGAUGG---------------------------------------------------------C-G-GUGGU-------------------------CUGCUCUUUUGAGU---------------------------------GGCUGCUGU------------------------------AUAGAGAGA-----UGUUACUCUUGAUGAUCUCGGCCCUU--------GGGACG----GUCUGCC---UUCG---GGCG------CGUUCU-----------------------------------------------------U-GGGGCGGGCAUUGAUGGA--CGUCUGACAGGC
Z78438.1/1-404 -GUCG-ACGUA--CUU----C-AUAGGA-UCAUUUCUAUAGGAA-UC-GU-CAC-----UCU--UUGACUCUU-CAA--AAGAGCCACUGAAUC---CAACUUGGUUGAUGAGCCGAA--GAACC-UUUGUACCC--AAGAGUGAG---------------------AAAAAAGAAUGUAUUA---------------------UUAGCUUGGUCCACAACCCUUAGCGGUUUGGCCAU----------CUACUCCCACAUUUUUGCUU----------------------UGCCUUUUGCAU---------AUGGUUUGUGUAUGG-A--UAGAGAACUUAGCUUGGUGGUUUAGAAGUAGGAAUUUCGAUUCUAUGCUUUUUGAACUUACCGGCUUUUUUCUUGUUUUAACUCC-UGCA-UGA-ACCG--CCUUUUAAUUGGCG-----------------------CGAUGAUCUUUGCCCAG--------UUUGUGGACUU--CUUC---GUGA---GGGG---ACAAACGUA-----------------------------------------------------U-UGGGUGGGUACAAAUGGC--AGUCUGACAAGU
AAFT01000078.1/54796-55089 -GUCG-ACGUA--CUU----C-AUAGGA-UCAUUUCUAUAGGUC-AC-GU-CCC-----ACU--UUGACUCUU-CUA--AAGAGCCACUGAAUC---CAACUUGGUUGAUGAGCGAGA--UACCC-UU-AUGCCC-UCAAAGUGAGA--------------------AUAGAUUUAGC--------------------------------UUGUCCACGAUCCUUUGCGGUCUGGUC-------------AUCUAUAAUUUGU---------------U------------UGCCUUUUAU-------------UU--AGCGC-AGA-G-C----------------------------------UUUGU------------------------------------------GCUCUUGCG-UU--U---------UCAAAAGGAG-----------------------CGAUGAUCUUGACCACU--------UUCUAAA-U---GCUCU---CUCG---GGAG----UCUUAGUU-----------------------------------------------------A-GUGGUGGGCAUAAGUGGC--UGUCUGACAAGU
X56982.1/37-291 -AUCG-ACGAU--ACU----CCAUAGGA-UCAUUUCUAUAGUAU-AC-GU-C--------CG--GCUUGGGUUUCCU--AACCU-AGCCACAGAACUCAACACGGAUGAUGAUAGGAG--GCACC-GUUG--CCC-UCAGAGUGAGGACUUUUAA-UUCUUUGA-AGGCA-------------------------------------------------UGC-----------------------------------------------U------UUU------------CGAUUAGGU------------------------------------------------------------------UUUU-----------------------------------------U-------------------------ACCUAAUUGUUUUGCUGU-----CUUUCUAUGCGAUGAUCUCU-UACAU--------GAUAUGUUUCC---------UUUU-------G--GU-CGUAUU-----------------------------------------------------A-UGUA-GGG--CAGCUGGUGUUUUCUGACGUGU
M26649.1/1-333 -GUCG-ACGUA--CUU----CA-UAGGA-UCAUUUCUAUAGGAA-UC-GU-CAC-----UCU--UUGACUCUU-CAA--AAGAGCCACUGAAUC---CAACUUGGUUGAUGAGUCCCA--UAACC-UUUGUACCC--CAGAGUGAGA--------------------AACCGAAAUUGAAUCUAA------------------AUUAGCUUGGUCCGCAAUCCUUAGCGGUUCGGCCAUCUA---UAAUUUUGAAUAAAAAUUUUGCUU----------------------UGGCGUUGCA--------------UUUGUAGUUUUU-U-C----------------------------------CUUU------------------------------------------GGAAGUAAUU-ACA-AU-------AUUUUAUGGCG-----------------------CGAUGAUCUUGACCCAU-------------CCUAUGUACUUC---UUUUU-UGAAGGGAUAGGGCUCU-----------------------------------------------------A-UGGGUGGGUACAAAUGGC--AGUCUGACAAGU
AAIH02000008.1/92390-92671 -CUUG-CCUAC--AGU----UC--AAAGAAUCACUUUAGAGUAG-AC-GU-CCCAC-CUCUG--A-ACUCUU-CUA----AAGAGCUACAGAAUCUCCACCCUUGCUGAUGACUUCUA--UGUCC-UCAAUGCCC--UAAAGUGAAGCCGUG--------UUUACUUC-----------------------------------------------------C-----------------------------------------------GUCU-CGACG------------G--------U--------------UGGUAUCUGCGA---ACGA---------------------------CUCGCUUCGGUGA---------------------------------GCUUGU-UCG-AG--UGC-C---------UC-------UCGUCCAG---------GGAGUGGUGAUGAUCUUUACCUUG--------UCUCGAU--GUCUUGAU---UUCG---GUCG-----GUC-GGA-----------------------------------------------------C-UUGGUGGGUGUUGA-GGA--GGUCUGAAAGGU
AAVQ01000002.1/348681-348994 -GUCG-ACGUA--CUU----C-AUAGGA-UCAUUUCUAUAGGUC-AC-GU-CCC-----UCU--UUGACUCUU-CAA--AAGAGCCACUGAAUC---CAACUUGGUUGAUGAGUGAGA--UA-CC-CUUAUACCC-UCAAAGUGAG---------------------AUACUAGUUUAG------------------------------CUUGUCCGUGAUUCUUUGCAAUCCG-------------------GUCAUCUACGUUUUGU---------U------------UGCCUUUUAG--------------UAUAAUCGCC------UGCGGUA--------------------UUUUGGAUUCGUUCCAAUAGC-----------------------UGCUAAUGAU--------------U----------UAAAAGGAG-----------------------CGAUGAUCUUUACCCUU--------UGUGA--CAUG--CCUU---CUAG---GAGGA--CU--UUGCA-----------------------------------------------------U-UGGGUGGGUAUAAGUGGC--UGUCUGACAAGU
AAID01000422.1/14605-14873 -AUCG-ACAAU--ACU----UCAAAGAA-UCAUUUCUUUAGUAA-AC-GU-CCUU--CUUCU--GU-GUUCU-CUAC--AAGAGCCACAGACUC---CAACUGGGACGAUGAGCC-----GAUCC-UCGAUGCCC--UAGAGUGAAACCG-UU-----UUUGCUUUCGUUUC---------------------------------------------UCUCCGCAA-------------------------------------GGAGGG--------------------------------------------------------AC-G-AGUUGA-----------------------GUCCUGGCAA-CAGUGA------------------------------CUUGAUUUGU------------------------------AUAGA------------AAGUGGUGAUGAUCUCGACCCUC--------UUUUGG------UUCUC---UUAG---GAGU------CUGGAU-----------------------------------------------------U-GGGGUGGGUGUUGAUGGA--CGUCUGACCAGU
FM992690.1/915250-915563 -GUCG-ACGUA--CUU----C-AUAGGA-UCAUUUCUAUAGGUC-AC-GU-CCC-----UCU--UUGACUCUU-CAA--AAGAGCCACUGAAUC---CAACUUGGUUGAUGAGUGAGA--UUACC-CUUGUACCC-UCAAAGUGAGAAAU-----------------AACAUGGAAUUUU---------------------------UGCUUGACUGUGAUUCUUUGCAAUCUGGU---------------CAUCUACUUAUA-AUGUU---------U------------UGCCUUUGACUU---------GAUUCU----UUCCU-U-U----------------------------------UUUUU-----------------------------------------UGAGGUUAUG-C-A-UCU-----AUUAUAAAGGAG-----------------------CGAUGAUCUUUACCCUU--------UUCA----UUGUGCCUU---CUAG---GAGG---AU-UUUGAA-----------------------------------------------------U-UGGGUGGGUACAAGUGGC--UGUCUGACAAGU
Y00887.1/157-490 -UAAC-ACAUU--CUA----CAGUAGGA-UCAUUUCUAUAGGAA-UC-GU-CAC-----UCU--UUGACUCUU-CAA--AAGAGCCACUGAAUC---CAACUUGGUUGAUGAGUCCCA--UAACC-UUUGUACCC--CAGAGUGAGA--------------------AACCGAAAUUGAAUCUAA------------------AUUAGCUUGGUCCGCAAUCCUUAGCGGUUCGGCCAUCUA---UAAUUUUGAAUAAAAAUUUUGCUU----------------------UGCCGUUGCA--------------UUUGUAGUUUUU-U-C----------------------------------CUUUG------------------------------------------GAAGUAAUU-ACA-AU-------AUUUUAUGGCG-----------------------CGAUGAUCUUGACCCAU-------------CCUAUGUACUUC---UUUUU-UGAAGGGAUAGGGCUCU-----------------------------------------------------A-UGGGUGGGUACAAAUGGC--AGUCUGACAAGU
CU633898.1/197623-197893 -GUCG-ACAAU--ACU----UCAGAGAA-UCAUUUCUAUAGUAG-UC-GU-CCUC---UUUU--GU-GUUCC-CUAA--AGGAGCCACAGAUCC---CACCCGGGUUGAUGAACG--A--UAUCC-UCGGCGCCC--AACAGUGAGGAGCCUUU---UUUUACUCUCGACC----------------------------------------------UGCCUGCAA-------------------------------------AGGUGG---------------------------------------------------------C-G-GUCGC--------------------------UGGCCUUUGUGCU----------------------------------GCGGCUGU------------------------------AUAGA------------GAGUGGCGAUGAUCUGUACCCCG-------AUUUCUCGAGGUCUUGCC---UUCG---GGCG---CUU---GAA-----------------------------------------------------C-GGGGUGGGUGUCGAUGGA--AGUCUGACCGGC
AAKE03000008.1/313515-313815 --UCU-GCCAC--AGU----UC--AAAGAAUCACUUUAGAGUAG-AC-GU-CCCAC-CUCUG--A-GCUCUU-CUA----AAGAGCCACAGAAUCUCCACCCUUGCUGAUGACUGCUA--UGUCC-UCGAUACCC--UAAAGUGAAGCCGUU--------CUUACUCC-----------------------------------------------------C-----------------------------------------------GACU-CGACC------------UUGCUUCG-U-------------UCCGACGCUCUGA---ACGAC--------------------------UUGUUGCAAAACGA--------------------------------GCUUGU-UCGGGCU-GUU-G--------GAGGUUGCUCUGGUCCAG---------GGAGUGGUGAUGAUCUUGACCUUG--------UCCUGAC--GUCUAGAC---UUCG---GUCG-----GUC-GGA-----------------------------------------------------C-UUGGUGGGUAUCGA-GGA--GGUCUGAAAGGU
CR382137.2/1282518-1282814 -GUCG-ACGUA--CUU----C-AUAGGA-UCAUUUCUAUAGGUC-AC-GU-CCC-----UCU--UUGACUCUU-CAA--AAGAGCCACUGAAUC---CAACUUGGUUGAUGAGUGAGA--UACCC-UU-AUACCC-UCAAAGUGAGA--------------------ACUAUAUUUAG-------------------------------CUUGUCUGUAAUCCUUAGCGAUUCGGUC-------------AUCUAUUAUUUGU---------------U------------UGCCUUUUAUC-----------UUG--AAGAUUUGG-A-A-----------------------------------UUUA------------------------------------------UUCCUCAUC-UU--U---------ACAAAAGGAG-----------------------CGAUGAUCUUUACCCUU--------UUUUA----UAUACUUC---UUCG---GAUG----UUUUAAAC-----------------------------------------------------U-AGGGUGGGUGUAAGUGGC--UGUCUGACAAGU
AAGT01000619.1/74722-75016 -AUCG-ACAAU--ACU----UCAAAGAA-UCAUUUCUUUAGUAA-AC-GU-CCUU--CUUCU--GU-GUUCU-CUAC--AAGAGCCACAGACUC---CAACUGGGAAGAUGAGUC-----GUUCC-UCAAUGUCC--UAGAGUGAA-GCC-UU------UUGCUUUCGUUUUAUUUCU-------------------------------CUUUUUCUUUCUCUCUU------------------------------------UUGGGGGAAGGGGGAGA------------GAGGAGUA--------------------------AU-G-UUGUU-------------------------UUUUGGUAA-CAAG---------------------------------AAAUGAUGU------------------------------AUAGA------------AAGUGGUGAUGAUCUCGACCCCU--------UUUUGA------UUGGC---UUCG---GUCG------UUGGAU-----------------------------------------------------U-GGGGUGGGCGUUGAUGGA--UGUCUGACCAGU
AM270263.1/106525-106819 -UUUG-CCUAC--AGU----UC--AAAGAAUCACUUUAGAGUAG-AC-GU-CCCAC-CUCUG--A-GCUCUU-CUA----AAGAGCCACAGAAUCUCCACCCUUGCUGAUGACUGCUA--UGUCC-UCGAUGCCC--UAAAGUGAAGCCGUU---------UUACUUC-----------------------------------------------------C-----------------------------------------------GACU-CGACC------------UUG------CA-----------UUUGCACGCUCUGU-U-ACAAU--------------------------CUGUUUUCGGAUAG--------------------------------ACUUGU-UUCGGGU-GUC-G--------GUG----UGAUGGUCCAG---------GGAGUGGUGAUGAUCUUUACCUUG--------UCAUGAU--GUCUUGAC---UUCG---GUCG-----GUC-GGA-----------------------------------------------------C-UUGGUGGGUGUCGA-GGA--GGUCUGAAAGGU
CR382132.1/3135255-3135515 -AGUG-AC-GU--AUU----CCAUAGGA-UCAUUUCUAUAGGAC-AU-GU-CUC----U--C--AUGACUUCUUAAA--AGAAGCCACUUAUUC---AAACUUGGUUGAUGAGAUAGA----ACC-UGCAAACCC--CAGAGUGAGAACACAUU----UGUU-----UGAUUG-------------------------------------------UUUGUCCUUGUG--------------------------------ACUCAGUCAUCUU-AUUA---------------------------------------UUCCC--GGC-G-C-----------------------------------GCAA------------------------------------------GCGUUCAAG-GAG--------------------------------------------CGAUGAUCUUGUCCCUU--------UGUU-----UGAGCCUC---UCUG---GAGG-----AGUGACU-----------------------------------------------------U-CGGGUGGGUUUGUAUGGC--AGUCUGACAAGU
AACD01000007.1/392675-392957 UGCCU-UCUAC--AGU----UC--AAAGAAUCACUUUAGAGUAG-AC-GU-CCCU--CAUUG--A-GCUCAU-CUA----AUGAGCCACACCCC--CAACCCUUGCUGAUGACUUCUA--UGUCC-UCGAUGCCC--UAAAGUGAAGCCGUG--------UUUACUCC-----------------------------------------------------C-----------------------------------------------GCCU-CGACC---------------------UU------------GUCUUCUCCGGU----ACAA---------------------------ACUGCUUUGGCGG---------------------------------GCUUGU--UCC-GA-GUU-GGC-----GCCU--------GGUCUAG---------GGAGUGGUGAUGAUCUUGACCUUG--------UCGUGGC--GUCUUGAC---UUCG---GUCG-----GCC-UGA-----------------------------------------------------C-UUGGUGGGUGUCGA-GGA--GGUCUGAAAGGC
AP007157.1/1106755-1107036 -CUUG-CCUAC--AGU----UC--AAAGAAUCACUUUAGAGUAG-AC-GU-CCCAC-CUCUG--A-ACUCUU-CUA----AAGAGCUACAGAAUCUCCACCCUUGCUGAUGACUUCUA--UGUCC-UCAAUGCCC--UAAAGUGAAGCCGUG--------UUUACUUC-----------------------------------------------------C-----------------------------------------------GCCU-CGACG------------G--------U--------------UGGUAUCUGCGA---ACGA---------------------------CUCGCUUCGGUGA---------------------------------GCUUGU-UCG-AG--UGC-C---------UC-------UCGUCCAG---------GGAGUGGUGAUGAUCUUUACCUUG--------UCUCGAU--GUCUUGAU---UUCG---GUCG-----GUC-GGA-----------------------------------------------------C-UUGGUGGGUGUUGA-GGA--GGUCUGAAAGGU
ABHY02000006.1/221131-221394 -AUCG-ACGAU--ACU----CCAUAGGA-UCAUUUCUAUAGUAU-AC-GU-C--------CG--GCUUGGGUUUCCU--AACCU-AGCCACAGAACUCAACACGGAUGAUGAUCGGUA--GCGCC-AUUG--CCC-GAAGAGUGAGAUAUUACUU-UCUUACUGAAUGGA------------------------------------------------UGCU-----------------------------------------------UU-----GUA------------GCUGGAUCC------------------------------------------------------------------UUUU-----------------------------------------U-------------------------GGAUCAAGUUGCAUAAUGGCAUCUGUUCAAGGCGAUGAUCUCU-UGCAU--------GAAUUGUUUCC---------UUUU--U----G--GU-CGAUUC-----------------------------------------------------A-UGUA-GGG--UAGUUGGCGUUUUCUGACGUGU
AAPO01000024.1/184329-184622 -GUCG-ACGUA--CUU----C-AUAGGA-UCAUUUCUAUAGUAG-AC-GU-CCC-----UCU--UUGACUCUU-CAA--AAGAGCCACUGAAUC---CAACUUGGUUGAUGAGUUAUGAUUACCC-UU-ACACCC-UCAGAGUGAGA--------------------AACACAAUUUUUU---------------------------UGCUUGACUAUGGUUCUCGAUAAUCUA--------------------GUCAUCUAGUUUGUU---------U------------UGCCUUGUUAG-----------CCAAUUAC--------------------------------------------UUUAC-----------------------------------------U--------G-UAA-U---------UGCGAAGGAG-----------------------CAAUGAUCUUGACCUUU--------UUUACUUUAUG--CCUU---UUUG---GAGG---AAAUUGUUU-----------------------------------------------------A-AAGGUGGGUGUAAGUGGC--UGUCUGACAAGU
CR380956.2/371024-371465 -UAAC-ACAUU--CUA----UAGUAGGA-UCAUUUCUAUAGGAA-UC-GU-CAC-----UCU--UUGACUCUU-CAA--AAGAGCCACUGAAUC---CAACUUGGUUGAUGAGCCACA--GAACC-UUUGUACCC--CAGAGUGAGAAACAAAC----CCAA-----UGGAGGUGACAUCUCUUCCGAAAG------GAAGAUGCAGUUUGGUUCCGUAAUCCUAAGCGGUUCGGUCAUCUG----UACUGUCCCUUCGCCCAACCCUUACG---UUU-------------UGCUGUUUGCG-----------UAUAGAAUUGGUUU-G-AUGCCC-----------------------ACAGGACUUCGGUCUUG------------------------------CGGGUGGACGACCUC-UUC-GACC--CCUUCAAAAUGGCG-----------------------CGAUGAUCUUUACCCAU-------------CUUGUGUACUUCU-CUUCGU-GGAAGGGACAAGUUUUUAUGGCCUAGGAGUUGAUAUCUUU------CGGGACAUCUUCUCUGUUUGGGUCU-UGGGUGGGUACAAAUGGC--AGUCUGACAAGU
AARE01001423.1/987-1250 -GACG-ACU-U--ACU----UCUAAGAA-UCAUUUCUAUAGUAU-AC-GU-CUCCUUCUGAU--UUUUUCGC-UUUA---GCGACAGAAUCCC----CACUCUUGCGGAUGACCU-UA--UGUCC-AGUAUGCCC--UAAAGUGAAACCGU----------GUGUUCC-----------------------------------------------------C-----------------------------------------------GCCU-CGACU------------U----------------------------------C-G-AUCAGA-----------------------UCUGGAUUCU-GUCCGG------------------------------GUUCUGUCGCU-----------------------------GUCCAG----------GGAAUGGUGAUGAUCUUGACCUUG--------CGCUAGC--GUCUUGAC---UUCG---GUCG-----GCUGCGU-------------------------------------------------------CUGGUGGGUGUACU-GGA--GGUCUGAAAGAG
CABE01000015.1/623590-623890 -GUCG-ACGUA--CUU----C-AUAGGA-UCAUUUCUAUAGUAG-AC-GU-CCC-----UCU--UUGACUCUU-CAA--AAGAGCCACUGAAUC---CAACUUGGAUGAUGAGGUCU----UGUCA--CCAGUCCAU-AAAGUGAGAACC-----------------AAUUUUGCU-----------------------------------UGACUAUGGUUUCUUAUAGCCUAG------------------UCAUCAAUUUGUUUUU---------U------------UGCCUCGUUAAU----------CAUUGCAAUUCUGU-U-U---------------------------------CUUCG------------------------------------------GGAACUUUU--UGC-A--------AUGUAGAGGAG-----------------------CGAUGAUCUUGAUCCUA--------UUUC---UUUAUACCCU----UUC---GGGGG--GAAUCGAUU-----------------------------------------------------U-GGGGUGGACUGU--UGGC--UGACUGACAAGU
AATM01000124.1/21634-21887 -AUCG-ACGAU--ACU----CCAUAGGA-UCAUUUCUAUAGUAU-AC-GU-C--------CG--GCUUGGGUUUCCU--AACCU-AGCCACAGAACUCAACACGGAUGAUGAUUGGAA--GCACC-GUUG--CCC-GAAGAGUGAGGCAAUUCUU--UCUUCGGGAGGG---------------------------------------------------AU--------------------------------------------------------A------------ACAGGAUCU------------------------------------------------------------------UUUUU----------------------------------------C-------------------------AGGUUCUGUUCUCCC----------UCUUCAGCGAUGAUCUCU-UACAC--------CUCUGGUUUCUC-GUCC---CCU----GGACG--GU-CCCGUC-----------------------------------------------------G-UGUA-GGG--CAGCUGGUGUAUUCUGACGUGU
AAFM01000009.1/176808-177101 -GUCG-ACGUA--CUU----C-AUAGGA-UCAUUUCUAUAGGUC-AC-GU-CCC-----UCU--UUGACUCUU-CAA--AAGAGCCACUGAAUC---CAACUUGGUUGAUGAGUGAGA--UA-CC-CUUACACCC-UCAAAGUGAG---------------------ACUAUAUUUAG-------------------------------CUUGACUGUGAUCCUUAGCGGUCUG-------------------GUCAUCUACCUAUUUU---------U------------UGCCUUUUAG-------------UUAUAAGACUU-G-G-A----------------------------------UUUA-------------------------------------------UCCUGUGUC-UU--U----------UAAAAGGAG-----------------------CGAUGAUCUUGACCCCU--------UUCUU--CAUA--CUUC---UUCG---GAGGU--UU--UAGAU-----------------------------------------------------U-GGGGUGGGUGUAAGUGGC--UGUCUGACAAGU
AAFU01000765.1/105651-105919 -GUCG-ACAAU--ACU----UCAGAGAA-UCAUUUCUAUAGUAU-UC-GU-CCUC---UUUU--GU-GUUCC-CUAA--AGGAGCCACAGAUCC---CACCCGGGUUGAUGAACG--A--UAUCC-UCGGCACCC--UACAGUGAGAUCC-UUU---UUUUACUCUCGUUC----------------------------------------------UGCCUGCAA-------------------------------------AGGCGG---------------------------------------------------------C-G-GUUG----------------------------UUGCUUCGUGCU----------------------------------GCGACUGU------------------------------AUAGA------------GAGUGGCGAUGAUCUGUACCCCGG------CUUUCUUGAGGACUUGCC---UUCG---GGCG---CUC---AGG-----------------------------------------------------C-GGGGUGGGUAUCGAUGGA--AGUCUGACCGGC
AAJN01000140.1/146399-146685 ------------------------AAAGAAUCACUUUAGAGUAG-AC-GU-CUCU--CAUUG--A-GCUUUU-CUA----AAAAGCCACAGAAUCUCCACCCUUGCUGAUGACUGCUA--UGUCC-UCGAUGCCC--UAAAGUGAAGCCGUG--------UUUACUUC-----------------------------------------------------C-----------------------------------------------GCCG-CGACC------------GCGU---CCGUUU--------CCGC--AUCUUG------AUACGC------------------------CUUGUCUUCGGACGA--------------------------------GCGUGU---GUCGG-GUG-UCUG--GGGCGGG---CAUCGGUCAAG---------GGAGUGGUGAUGAUCUUGACCUUG--------UCUUGAC--GUCG-GAC---UUCG---GUCG-----GUC-GGA-----------------------------------------------------C-UUGGUGGGUGUCGA-GGA--GGUCUGAAAGGU
AJ507113.1/1-287 -GUCG-AC-GU--ACU----UCAUAGGA-UCAUUUCUAUAGGAC-AC-GU-C-------CCU--UUGACUCUUUUAAAAAAGAGCCACUGUUUC---CAACUUGGUUGAUGAGGUAGA--UA-CC-CUUGUGCCC--AAGAGUGAGAAGUU----------------UACUAGUUUGUCCGGAU--------------------CCUUAGCGGUCUGGUCAU----CU--------------------------------AUCACUUUU---------U------------UGCCUUUAG----------------UUUGUGGGAGU-U-A-----------------------------------CUUG------------------------------------------UAACUCUCC-U---------------UAAAGGAG-----------------------CGAUGAUCUUGACCCUU--------UG--UUG--UGUACUCU---UUAG---GGAG-----GGACUCU-----------------------------------------------------U-AGGGUGGGUGCAAGAGGC--AGUCUGACAAGU
AJ507111.2/71-377 -AUAG-ACUAACACCUUCCAAAGUAGGA-UCAUUUCUAUAGUUU-AC-GU-CCC-----UCU--UUGACUCUU-CUA--AAGAGCCACUGAAUC---CAACUUGGUUGAUGAGCCGUA--UA-CC-UUUGUGCCC--UAGAGUGAGAAAUA----------------CAAUUUAGCUUGUCUAUAAC-------------CCUUAGCGGUUUAGUCAUCUAU----U---------------------------------UUAAUUUUG---------C------------CUUUUGUUAC--------------AAAGGAACUCGU-C-C-----------------------------------UUAU------------------------------------------GGACUUGAUGCCU------------UUAUAAAGGA---------------------GCGAUGAUCUUGACCCUG--------UUUA-----UGAACUUU---UUCG---GAAG----G-GAUAAA----------------------------------------------------UA-UGGGUGGGUGCAAAUGGC--AGUCUGACAAGU
EU526091.1/80-338 -ACCGCACUUU--ACA----GG--AGAA-UCAUUUCUAUAGUAU-UU-GUCCUC----UUUU--GUGUUCCC--UAA--AGGAGCCACAGAUCC---CACCGCGGUUGAUGAUCA--A--UAUCC-UCGGCGCCC--AACAGUGAGGUCCUUA-----UUUAC--UCUCGCUC------------------------------------------UGCCUGC-----------------------------------------AAAGGU---------G-------------GCG----------------------------GUCG-C-------------------------------------UUCAC----------------------------------------G-GCGAU------------------------UGU-AUAGA------------GAGUGGCGAUGAUCUGUACCCCGAU----UU-CCAGA---GGUCUGCC---UUCG---GGCG----C-UUUGG------------------------------------------------------C-GGGGUGGGUGUCGAUGGA--AGUCUGACGCG-
AJ507109.2/108-392 -UGCA-AC-------------AGUAGGA-UCAUUUCUAUAGUUU-AC-GU-CCC-----UCU--UUGACUCUU-CUA--AAGAGCCACUGAAUC---CAACUUGGUUGAUGAGAUAUA--UA-CC-UUUGUGCCC--UAGAGUGAGGUUUUUG------U-U-----UA---GCUUGUCCA-------------------------CAACUCUUUGC---------AGUUUGG----------------------UCAUCUACAAAUU----------U------------UGCCUUUUCU-------------UCA--UAAUUUGA-A-C-----------------------------------UUCG------------------------------------------GUUCAUGUU-A---U---------UUCAAAGGAG-----------------------CGAUGAUCUCGACCCAG----------UUUAU--G-UACUUC---UUCG---GAAG---GGAUAGACC-----------------------------------------------------U-UGGGUGGGCGCAAAUGGC--AGUCUGACAAGU
AACQ01000009.1/90506-90829 -GUCG-ACGUA--CUU----C-AUAGGA-UCAUUUCUAUAGGUC-AC-GU-CCC-----UCU--UUGACUCUU-CAA--AAGAGCCACUGAAUC---CAACUUGGUUGAUGAGUGAGA--UUACC-CUUAUACCC-UCAAAGUGAGAUAAUAAC----AU-G-----A----AAUUUUUUGCUUGACCGU-------GAUUCUUUGCAAUCUGGCCA---------UCUA----------------------------CUUAUAAUGUU---------U------------UGCCUUUAAC--------------UUUUUUUUUGAU-G-CUAACC------------------------UAGUC------AUAG--------------------------------GUGAUGCAUUUAAU-AU--U---------UCUAAAGGAG-----------------------CGAUGAUCUUUACCCUU--------UUCA----UUGUGCCUU---CUAG---GAGG----AUUUUGAA-----------------------------------------------------U-UGGGUGGGUAUAAGCGGC--UGUCUGACAAGU
AACI02000279.1/5254-5586 -UAAC-ACCUU--UUA----CAGUAGGA-UCAUUUCUAUAGGAA-UC-GU-CAC-----UCU--UUGACUCUU-CAA--AAGAGCCACUGAAUC---CAACUUGGUUGAUGAGUCCCA--UAACC-UUUGUACCC--CAGAGUGAGAAACUG-------A-A-----AUU--AAAUCUAAAUUAGCU--------------UGGUCCGCAAUCCUUA---------GCGGUUCGGCCAUCUA----UAAUUUUGAAUAAAAAUUUUGCU---------U------------UGCCGUUGCA--------------UUUGUGACUUCU-U-C----------------------------------CUUUG------------------------------------------GAAGUUGUC-ACU-A---------CUAAAUGGCG-----------------------CGAUGAUCUUGACCCAU--------CCUAU--GUACUUCCUU---UUUG---GAAG---GG--AUAGGGC------------------------------------------------UUUA-UGGGUGGGUACAAAUGGC--AGUCUGACAAGU
ABPO01000470.1/2611-2943 -UAAC-ACAUU--CAA----CAGUAGGA-UCAUUUCUAUAGGAA-UC-GU-CAC-----UCU--UUGACUCUU-CAA--AAGAGCCACUGAAUC---CAACUUGGUUGAUGAGCCCCA--UAACC-UUUGUACCC--UAGAGUGAGAAAUUG--------AA-----AUUA-AUCGAAAUUAGCUUGGUCCGCAAUCCUUAGCGGUUCGGCCAUCUA---------UAAUUUU---------------------UUAACAAAUUUUGCU---------U------------UGCCGUUGCA--------------UUUGUAAUCUCU-U-C----------------------------------CUCUG------------------------------------------GAAGCUUUU-ACG-AU-------CUUUAAUGGCG-----------------------CGAUGAUCUUGACCCAU--------CCUAU--GUACUUCCUU---UUUG---GAAG---GG--AUAGGGC------------------------------------------------UUCA-UGGGUGGGUACAAAUGGC--AGUCUGACAAGU
AABY01000172.1/20003-20336 -AACG--CAUU--CAA----CAGUAGGA-UCAUUUCUAUAGGAA-UC-GU-CAC-----UCU--UUGACUCUU-CAA--AAGAGCCACUGAAUC---CAACUUGGUUGAUGAGCCCCA--UAACC-UUUGUACCC--UAGAGUGAGGAAAUG-------A-A-----AUU--AAAUCUAAAUUAGCU--------------UGGUCCGCAAUCCUUA---------GCGGUUCGGCCAUCUA----UAAUUUUGAAUAAAAAUUUUGCU---------U------------UGCCGUUGCA--------------UUUGUAAUUUUU-U-C----------------------------------CUUUG------------------------------------------GAAGUUAUU-ACG-AU-------AUUUAAUGGCG-----------------------CGAUGAUCUUGACCCAU--------CCUAUGU--ACUUCCUU---UUUG---GAAG-----GGAUAGGAC------------------------------------------------UUCA-UGGGUGGGUACAAACGGC--AGUCUGACAAGU
ABJE01001085.1/27369-27637 -UAAU-CCCUU--CCU----CAGGAGAA-UCAUUUCUAUAGUAU-UC-GA-CCUA---CUCU--G-GGUUCU-CCAA--AAGAGCCACAGAUCC---CACCCUGGUUGAUGAUUG--A--UAUCC-UCGACACCC--UAGAGUGAAUGGCUCU-----GGUUGC-CCUCGCA---------------------------------------------CUGCCUGCA-------------------------------------AAGGUG---------G--------------CGGCUCUU--------------G----------C-C------------------------------------CUUCUC----------------------------------------G-GGU----------------------GAGCUG--UAUAAGA---------GGGCGUUUUAUGAUCUCGUCCCUG--------CUUCGCG--GUCUUGCC---CUUG---GGCG-----CGC-GGG-----------------------------------------------------C-GGGGUGGGUGUUGACGGA--CGUCUGACAGGC
AABX02000070.1/138290-138551 -ACCA-ACA-------------GGAGAA-UCAUUUCUAUAGUAU-UU-GU-CCUC---UUUU--GUGUUCCCU--AA--AGGAGCCACAGAUCC---CACCCGGGUUGAUGAACU--A--UAUCC-UCGUUUCCC--AACAGUGAGGUCCCUUUU--AUUUUAC-UCUCGCU---------------------------------------------CUGCC-UGA-------------------------------------AAAGGU---------G--------------GCGAUCU--------------------------U-G-C-----------------------------------UUCAC----------------------------------------UGCAU----------------------GAUUGU--AUAGA------------GAGUGGCGAUGAUCUGUACCCCGAU----UU--CCCAA--GGUCUGCC---UUCG---GGCG----CUUGGG-------------------------------------------------------C-GGGGUGGGUUUCGAUGGA--AGUCUGACCGGC
AATT01000185.1/15906-16168 -GUCG-AC-CA--ACU----CUUCAGGA-UCAUAUGUAGAGUUCGUU-GU-ACU-----AUA--CUAGCUUUUUCAA--AAGAGCUACACUUAA---CAACAUGGAUGAUGAGACGAA----GGA-CAACCACUC--AAGGG-GAA---GUG---------------------------------------------------------------------CAGGA------------------------------------CAUUUUG---------U------------GACAAUUGGG--------------GU-----UUUUU-U-C----------------------------------AUUUGA----------------------------------------AGAAGAU------------------GCUAAUUGUUCGAUUUG---------UCUUGGUUGAAGAC--UACUCCUGA-----UUGCUGGAC--U---UGCC---CUUG--UGGCA-----GUCUGGC-----------------------------------------------------C-AGGAAGGGUGGAUGGCCC--UGUCUGACAUGU
AATT01000185.1/2392-2654 -GUCG-AC-CA--ACU----CUUCAGGA-UCAUAUGUAGAGUUCGUU-GU-ACU-----AUA--CUAGCUUUUUCAA--AAGAGCUACACUUAA---CAACAUGGAUGAUGAGACGAA----GGA-CAACCACUC--AAGGG-GAA---GUG--------CA-----GG---------------------------------------------------AC-----------------------------------------AUUUUG---------UGACAAUUGGGGUUUUUUUCAUU--------------UGAAGAAGAUGC-U-A----------------------------------GUUGU------------------------------------------UCGAUUUGU-CUU-G---------GUUGAAGAC---------------------------------UACUCCUGA-----UUGCUGGAC--U---UGCC---CUUG--UGGCA-----GUCUGGC-----------------------------------------------------C-AGGAAGGGUGGAUGGCCC--UGUCUGACAUGU
AFQF01003453.1/39631-39905 -GUCG-ACAAU--ACU----UCAGAGAA-UCAUUUCUAUAGUAU-UC-GA-CCUU---CUCU---UGGUUCC-CUAA--AAGAGCCACAGAUCC---CACCCUGGUUGAUGAAUG-AA--UAUCC-UCGAUGCCC--UAGAGUGAAUACCCCUUU--UGGUCCUCUCGAUC----------------------------------------------UGUCCGCAA-------------------------------------GGAUGG---------------------------------------------------------C-G-GUGGU--------------------------UGCUCUUU-GAGU---------------------------------GGCCGCUGU------------------------------AUAGAGAGA-----UGUUACUCUUGAUGAUCUCGGCCCCC--------AGAGCG----GUCUGCC---CUCG---GGCG------CGCUUU-----------------------------------------------------U-GGGGCGGGCAUUGAUGGA--CGUCUGACAGGC
ABDG02000022.1/919092-919362 -AACA-ACUUC--AA-----CAGGAGAA-UCAUUUCUAUAGUAU-UU-GU-CUCU---UGCU--UUGGUUCC--CAA--AAGAGCCAUCGAAUC---CACCCUGGUUGAUGAUUG-CA--UAUCC-UCGAUACCC--AAGAGUGAAUUUUCUG------GUC----C-----------------------------------------------------U---------------------------------------------------------C------------UCGCUCUGUCCG---------CAAGGAUGGCGGCAGUAGC----------------------------------CUCGU------------------------------------------G-CUUCUGC-UGU-A---------UAGAGAGCUGUUUU--------------CUUCUUGAUGAUCUCGACCCUA--------UCCGUG---GUCAUGCC---UUCG---GGCG------CACUGG-----------------------------------------------------U-AGGGUGGGUGUCGAUGGA--CGUCUGACAGGC
AE016816.3/565015-565319 -ACCG-ACG-U--ACU----UCAUAGGA-UCAUUUCUAUAGGAA-UC-GU-CAC-----UCU--UUGACUCUU-CAA--AAGAGCCACUGAAUC---CAACUUGGUUGAUGAGCAUCA--GAGCC-UCUGCACCC--CAGAGUGAG---------------------AACAAAGAUUGUUU-------------------------UAGCUUGGCCAUAAUCCUUAGCGGUUUGGC----------------CAUCUGCAACCUUUGCU---------A------------UGCCUUUGCAA-----------UCAGU--CGCAACC-G-G------------------------------------CUU-----------------------------------------GCCGGCGGCG-CAG-C----------UAAAAGGCG-----------------------CGAUGAUCUUGGCCCGC-------------UCUGUGCACUUC---UUCG--UGAAG----GGACAGUU-----------------------------------------------------G-CGGGUGGGAGCAGAUGGC--AGUCUGACAAGU
AAIL02000034.1/934416-934691 -AACA-ACCUU--UUG----CAGGAGAA-UCAUUUCUAUAGUAU-UC-GU-CUC-----UCGCUUUGGUUCC--CAA--AAGAGCCAUCGAAUC---CACCCUGGUUGAUGAUUG-UA--CAUCC-UCGAUACCC--AAGAGUGAAUACUUU--------UU----U-G--------------------------------------------------GUCC----------------------------------------------U-------CU------------CGCUCUGUCCGC---------AAGGACGGCGGCGGU-U-G----------------------------------CUCUUU----------------------------------------GUGGCUUCCG-CUG-U-----------AUAGAGAGUUGUU-------------UCUCUUGAUGAUCUCGACCCUG--------CCGGU---UCUUUUGUC---UUCG---GGCA----U--GCUGG-----------------------------------------------------U-AGGGUGGGUGUCGAUGGA--CGUCUGACAGGC
ABDF02000091.1/852020-852294 -ACAA-ACCGC--CCU---ACAGGAGAA-UCAUUUCUAUAGUAU-UC-GU-CUCU---UGCU--UUGGUUCC--CAA--AAGAGCCAUCGAAUC---CACCCUGGUUGAUGAUUG-UA--UAUCC-UCGAUGCCC--AAGAGUGAAUUUUUA--------UG-----GUCCUCUC--------------------------------------GCCC-------UGUCCGCA-----------------------AGGAUGGC-----------------------------------GGC-------------A-GUUGCCUUUGU-G-C----------------------------------UUCUGC----------------------------------------UGUAUAGAG-----AGU------UGUUU-------UUU----------------CUCUUGAUGAUCUCGACCCUG--------CCGGUG----GUCUGCC---UUCG---GGCG------CGCUGG-----------------------------------------------------U-AGGGUGGGUGUCGAUGGA--CGUCUGACAGGC
#=GC SS_cons .:::<.<<<<<..<<<....--<<<<<<.____>>>>>>>>>>>.>-.>>.>,,.....<<<..-<<<<<<<<.___..>>>>>>>>->>>---...---((((--------------..--(((.(((((((((..,,<<<----------........--.....----..............................................------..-....................................-------.........-............<-<<<<<<--..............--<<<<<<--<<.<.<..................................______........................................_>>>>-->>>.>>>.-.........-->>>>>>->.......................------->>>,<<<<<<........<<<<<<<..----<<<<...____...>>>>....->>>>>>>.....................................................>.>>>>>)))))))))-)))..-------)))):
#=GC RF_cons .gucg.ACauu..ccu....caauAGgA.UCAUUuCUauaggaa.uC.GU.ccC.....ucu..uUGgcucuU.CAA..AagagcCACagaAuC...CAACuuGGUUGAUGAgucauA..UAgCC.ucuguaCCC..uAgAGUGAGaacuUu........uu.....auua..............................................uaauCc..A....................................uuuuuuU.........u............cgccuuuuuc..............uuuggcccuUcc.u.c..................................uUUuua........................................ggagguuggg.cca.a.........uuaaaaggcg.......................CGAUGAUCUcuaCCCau........cccggcc..uuuucgcC...UUcG...Ggcg....uggccggg.....................................................a.uGGGuGGGuacagaUGGc..aGUCUGACaaGU
//