Yeast-shared

/coalispr/docs/_source/tutorials/Yeast/shared/
├── 0_0-SRAaccess.sh
├── 0_1-SRAaccess.sh
├── 0_1_2-SRAaccess-ref.sh
├── 0_2-gzip-fastq.sh
├── 1_1-star-indices.sh
├── 2_0-flexbar-trim.sh
├── 2_1-collapse-pre-trimmed-seqs.sh
├── 3_1-run-starPE-collapsed-14mer.sh
├── 3_2-run-make-bedgraphs.sh
├── 3_2_0-run-sortBAM-star-Bedgraph.sh
├── 4_1-run-starPE-uncollapsed-14mer.sh
├── 4_1_2-remove-genome-from-shared-memory.sh
├── 4_2-run-make-bedgraphs-uncollapsed.sh
├── Saccharomyces_cerevisiae.R64-1-1.75_1.2.gtf
├── Saccharomyces_cerevisiae.R64-1-1.75_chromosome_lengths.txt
└── XtraColumns.txt

 /coalispr/docs/_source/tutorials/Yeast/checks/
├── 3_yeast.txt
├── check_Kre33-SRR_Acc_List.txt
├── check_Nab3-SRR_Acc_List.txt
├── check_Puf6-SRR_Acc_List.txt
├── meta-Kre33-SraRunTable.txt
├── meta-Nab3-SraRunTable.txt
└── meta-Puf6-SraRunTable.txt