snoZ107-SnoR29b¶
snoZ107-SnoR29b_intronic-boxCDsnoRNA-84nt-in-CNB04560
Putative, because poorly expressed in C. deneoformans; also tentative for CNAG_03967 in C. neoformans.
Duplicate of SnoR29 that is expressed in UTP17 intron.
Within 2nd intron of CNB04560 (CNAG_03967) for F-actin capping protein.
Predicted target in 25S rRNA: ctgTtgagcttg
Orthologue of plant SnoR29-1, SnoR29-2, snoZ107_R87 or fission yeast snR88 (D' guide)
Predicted modification as in fission yeast snR88 (see also snR88 D-box orthologue), but is shifted four nucleotides from that in plant, which uses a different D’ box (caga ).
>AE017342.1:c1309856-1309773 Cryptococcus neoformans var. neoformans JEC21 chromosome 2 sequence TGTCCGAATATGAGCAAATCTTTTCAAGCTCAACAGTCCTACCATAAGCTGAGGACAATTACTCTTCTAT TTCTCTGAGGATTA
Image source sno107-SnoR29:
# STOCKHOLM 1.0
#=GF RW van Nues, August 2023
#=GF https://coalispr.codeberg.page/paper
#=GS H99/1-87 DE 2: [1,297,313 - 1,297,400]:-1 (+87)
H99/1-87 --TTTCCGAAGATGAGCAAA---CCTCTTCAAGCTCAACAGTCCTAC--------------CATAA-------------GCTGAGGACAGTTACT---CTTCTTCAATTTCTCTGAGGATTA------
#=GS snoZ107-SnoR29/2-85 DE in-CNB04560 AE017342.1:c1309857-1309773 Cryptococcus neoformans var. neoformans JEC21 chromosome 2 sequence
snoZ107-SnoR29/2-85 --TGTCCGAATATGAGCAAA---TCTTTTCAAGCTCAACAGTCCTAC--------------CATAA-------------GCTGAGGACAATTA------CTCTTCTATTTCTCTGAGGATTA------
#=GS WM276/1-88 DE CP000286.1:298132-298219 Cryptococcus gattii WM276 chromosome A, complete sequence
WM276/1-88 -GTATTCGAAGATGATCAAA---CCTTTTCAAGCTCAACAGTCCTAT--------------CATAA-------------GCTGAGGACATTTACT---CTTCTTTTATTTCTCTGAGGATTA------
#=GS R265/1-84 DE CP025761.1:c1661246-1661163 Cryptococcus gattii VGII R265 chromosome 3, complete sequence
R265/1-84 --TATTCGAAGATGATCAAA---CCTTTTCAAGTTCAACAGTCCTAT--------------CATAA-------------GCTGAGGACATTTG------TTCTTCTATTTCTCTGAGGATTA------
#=GS CryFlo-1/1-84 DE RRZH01000001.1:c1888464-1888381 Cryptococcus floricola strain DSM 27421 chromosome 1, whole genome shotgun sequence
CryFlo-1/1-84 --TTTCCTATGATGAGCAA---TTCTTTACAAGCTCAACAGTCCTAC---------------CATT-------------ACTGAGGATACCCCT----CTTCTTCTTTATCTCTGAGGATT-------
#=GS CryFlo-2/1-83 DE RRZH01000001.1:c1888851-1888769 Cryptococcus floricola strain DSM 27421 chromosome 1, whole genome shotgun sequence
CryFlo-2/1-83 ---TTCCTATGATGAGCAA---TCTTTTACAAGCTCAACAGTCCTAC---------------TATT-------------ACTGAGGATACCCCT----CTTCTTCTTTATCTCTGAGGATT-------
#=GS CryFlo-3/1-81 DE RRZH01000002.1:559830-559910 Cryptococcus floricola strain DSM 27421 chromosome 2, whole genome shotgun sequence
CryFlo-3/1-81 --CGTCCTATGATGAGCAA----TCTTTACAAGCTCAACAGTCCTAA---------------TATT-------------ACTGAGGATACCCCT----CTTCTTCTTTATCTCTGAGGA---------
#=GS CryWin-1/1-84 DE AWGH01000008.1:208676-208759 Cryptococcus wingfieldii CBS 7118 supercont1.8, whole genome shotgun sequence
CryWin-1/1-84 --TTTCCTATGATGAGCAA---TTCTTTACAAGCTCAACAGTCCTAC---------------CATT-------------ACTGAGGATACCCCT----CTTCTTCTTTATCTCTGAGGATT-------
#=GS CryWin-2/1-83 DE AWGH01000008.1:208319-208401 Cryptococcus wingfieldii CBS 7118 supercont1.8, whole genome shotgun sequence
CryWin-2/1-83 ---TTCCTATGATGAGCAA---TCTTTTACAAGCTCAACAGTCCTAC---------------TATT-------------ACTGAGGATACCCCT----CTTCTTCTTTATCTCTGAGGATT-------
#=GS CryWin-3/1-82 DE AWGH01000005.1:c417325-417244 Cryptococcus wingfieldii CBS 7118 supercont1.5, whole genome shotgun sequence
CryWin-3/1-82 -TCGTCCTATGATGAGCAA----TCTTTACAAGCTCAACAGTCCTAA---------------TATT-------------ACTGAGGATACCCCT----CTTCTTCTTTATCTCTGAGGA---------
#=GS CryAmy-1/1-84 DE MEKH01000002.1:443233-443316 Cryptococcus amylolentus CBS 6273 supercont2.2, whole genome shotgun sequence
CryAmy-1/1-84 --TTTCCTATGATGAGCAA---TTCTTTACAAGCTCAACAGTCCTAC---------------CTTT-------------ACTGAGGATACCCCT----CTTCTTCTTTATCTCTGAGGATT-------
#=GS CryAmy-2/1-84 DE MEKH01000002.1:442844-442927 Cryptococcus amylolentus CBS 6273 supercont2.2, whole genome shotgun sequence
CryAmy-2/1-84 --CTTCCTATGATGAGCAA---TCTTTTACAAGCTCAACAGTCCTAC---------------TATT-------------ACTGAGGATACCCCT----CTTCTTCTTTATCTCTGAGGATT-------
#=GS CryAmy-3/1-82 DE MEKH01000001.1:521023-521104 Cryptococcus amylolentus CBS 6273 supercont2.1, whole genome shotgun sequence
CryAmy-3/1-82 -TCGTCCTATGATGAGCAA----TCTTTACAAGCTCAACAGTCCTAA---------------TATT-------------ACTGAGGATACCCCT----TTTCTTCTTTATCTCTGAGGA---------
#=GS CryGC2/1-84 DE JALPCC010000003.1:c116895-116812 Cryptococcus sp. GC_Crypt_2 iso00_70_3, whole genome shotgun sequence
CryGC2/1-84 -CGACCCGATGATGAGCAAAA--CTTTATCAAGCTCAACAGTCAGATT--------------ACA-------------AGATGTTGATACTC------CTTCTTC-AACCCTCTGAGGGTC-------
#=GS PapTer/1-87 DE JAHXHD010000720.1:c42180-42094 Papiliotrema terrestris strain LS28 scaffold-719, whole genome shotgun sequence
PapTer/1-87 --GTATCTATGATGAGCAAACA-TTTTATCAAGCTCAACAGTCCGAA--------------TACAAG------------ACTGTGGACAACCTC----TTTCTTC-AACCCTCTGAATCCG-------
#=GS TreMes/1-81 DE SDIL01000049.1:c131058-130978 Tremella mesenterica strain ATCC 28783 supercont1.49, whole genome shotgun sequence
TreMes/1-81 --TGCCCCAAGATGAGACAAAA----TATCAAGCTCAACAGTCCTAC--------------TATT--------------GCTGCGGATACCC------TTTCTTC-AACCCTCTGAGGGCAC------
#=GS TreFuc/1-87 DE BRDD01000112.1:257718-257804 Tremella fuciformis NBRC 9317 DNA, KCNB80TF.112, whole genome shotgun sequence
TreFuc/1-87 --CGCCCGAAGATGAGCAAAA--CCTTTTCAAGCTCAACAGTCTTACCC-------------TAT------------GGGATGCTGACACCCT-----TTTCTTC-AACCCTCTGAGGGCTT------
#=GS TreYok/1-87 DE BRDC01000028.1:390580-390666 Tremella yokohamensis NBRC 100148 DNA, KCNB35TY.28, whole genome shotgun sequence
TreYok/1-87 --CGCCCGAAGATGAGCAAAA--CCTTTTCAAGCTCAACAGTCTTACCC-------------TAT------------GGGATGCTGACACCCT-----TTTCTTC-AACCCTCTGAGGGCTT------
#=GS NaeEnc/1-91 DE MCFC01000088.1:c28244-28154 Naematelia encephala strain 68-887.2 BCR39scaffold_88, whole genome shotgun sequence
NaeEnc/1-91 -ATGTTCAAAGATGAGCAAAA--CTTTATCAAGCTCAACAGTCCGAACAC------------TAT-----------GTGACTGTGGACACCC------TTTCTTC-AACCCTCTGAGAACATCG----
#=GS NaeAur/1-91 DE JAKFAO010000001.1:1991765-1991855 Naematelia aurantialba strain NX-20 Contig1, whole genome shotgun sequence
NaeAur/1-91 -ATGTTCAAAGATGAGCAAAA--CTTTATCAAGCTCAACAGTCCGAACAC------------TAT-----------GTGGCTGTGGACACCCA------TTCTTC-AACCCTCTGAGAACATCG----
#=GS CutOle-1/1-88 DE QKWL01000001.1:4099610-4099697 Cutaneotrichosporon oleaginosum strain ATCC 20508 ATCC20508_contig01, whole genome shotgun sequence
CutOle-1/1-88 --CCTTCCATGATGAGCAAAATAA-TTTTCAAGCTCAACAGTCCTAC--------------ACAC--------------ACTGAGGACACCCTA-------CTTCT--ACTTCTGATCTCTTGGCGCT
#=GS CutOle-2/1-84 DE QKWL01000001.1:c1453224-1453141 Cutaneotrichosporon oleaginosum strain ATCC 20508 ATCC20508_contig01, whole genome shotgun sequence
CutOle-2/1-84 -AGGTTTCATGATGAGTAAACCCA-TTTTCAAGCTCAACAGTCCTAA---------------ACT-------------TGTTGCGGATACCCTA-------CTTCT--ACTTCTGATCTGCCT-----
#=GS CutDas/1-83 DE BEDX01000006.1:c228867-228785 Cutaneotrichosporon daszewskae DNA, scaffold: scaffold_6, strain: JCM_11166, whole genome shotgun sequence
CutDas/1-83 --GTTTTTGTGATGAGCAAACA---TTTTCAAGCTCAACAGTCCTATA--------------TAA-------------TATTGCGGACAAACC-----CTTCTTC-TATTTTCTGAACTAC-------
#=GS BulAlb/1-84 DE BCIX01000004.1:554691-554774 Bulleromyces albus DNA, scaffold: scaffold_3, strain: JCM 2954, whole genome shotgun sequence
BulAlb/1-84 --CGCCCGAAGATGAATAAA--CTTTATTCAAGCTCAACAGTCCGAAT-------------ACAA-------------AACTGTGGACATCCT-----TTTCTTC-AACCCTCTGAGGGC--------
#=GS KwoHev/1-106 DE ASQB01000051.1:456715-456820 Kwoniella heveanensis BCC8398 cont1.51, whole genome shotgun sequence
KwoHev/1-106 --ACCCCAAAGATGAACAAA---TATCTACAAGCTCAACAGTCCTACTCT-----GGGCTTAAAAAACCGCAG----AGGATGAGGACTATCTCTTCTTCTTCTTTTTATTTCTGAGGGG--------
#=GS KwoMan/1-89 DE ASQE01000004.1:162079-162167 Kwoniella mangroviensis CBS 8507 cont2.4, whole genome shotgun sequence
KwoMan/1-89 --TACCTTATGATGAACAA---TACTATACAAGCTCAACAATCCTACT--------------GTAG-------------AATGAGGACCATTCAC-TTCTTCTTCTTAAATTCTGAAGGTTA------
#=GS TriGue/1-89 DE BCJX01000006.1:531408-531496 Trichosporon guehoae DNA, scaffold: scaffold_5, strain: JCM 10690, whole genome shotgun sequence
TriGue/1-89 GGTGCCCTATGATGATCAA----TTTTTACAAGCTCAACAGTCCTATT--------------CATA------------ACATGAGGACTCTAT--CTTCTTCTTCTTTATTTCTGAGGGCA-------
#=GS TriBra/1-90 DE BCJI01000003.1:c968695-968606 Trichosporon brassicae DNA, scaffold: scaffold_2, strain: JCM 1599, whole genome shotgun sequence
TriBra/1-90 GTTCTTCAAGGATGAACAAA----TTTTACAAGCTCAACAGTCCTAA--------------TAACT-------------TATGAGGACCTTATT-CTTCTTCTTCTTTAATTCTGAGCCGAA------
Annot/1-34 --------RTGATGA--------------GUUCGAGUUGUC-CTGA----------------------------------RTGATGA-------------------------CTGA------------
#=GS TriDic-snoZ107/1-104 DE Triticum_dicoccoides snoZ107_R87 http://snoopy.med.miyazaki-u.ac.jp/snorna_db.cgi?mode=sno_info&id=Triticum_dicoccoides300966
TriDic-snoZ107/1-104 -GATGGCAGTGACGATTTGCAAA--TATTCAAGCTCAACAGACCAAAT--------CACAGGTTTTCTCTC-------AAGAGTTGATTTGTATGCCGATTATCCCGCTGAACTGAGCCATC------
#=GS TriAes-snoZ107/1-104 DE 28S rRNA Triticum_aestivum snoZ107_R87 http://snoopy.med.miyazaki-u.ac.jp/snorna_db.cgi?mode=sno_info&id=Triticum_aestivum301324
TriAes-snoZ107/1-104 -GATGGCAGTGACGATTTGCAAA--TATTCAAGCTCAACAGACCAAAT--------CACAGGTTTTCTCTC-------AAGAGTTGATTTGTATGCCGATTATCCCGCTGAACTGAGCCATC------
#=GS AegTau-snoZ107/1-104 DE 28S:G2408,28S:2385 http://snoopy.med.miyazaki-u.ac.jp/snorna_db.cgi?mode=sno_info&id=Aegilops_tauschii300644
AegTau-snoZ107/1-104 -GATGGCAGTGACGATTTGCAAA--TATTCAAGCTCAACAGACCAAAT--------CACAGGTTTTCTCTC-------AGGAGTTGATTTGTATGCCGATTATCCCGCTGAACCGAGCCATC------
#=GS Ory-Z107/1-119 DE Oryza_sativa Z107_R87 http://snoopy.med.miyazaki-u.ac.jp/snorna_db.cgi?mode=sno_info&id=Oryza_sativa300230
Ory-Z107/1-119 -GATGGCAGTGACGACCTGGTAA--TATTCAAGCTCAACAGACCAAATCACAGGTCTTTCTCTCTGGATCTACTCCTCAGGGATTGATTTGTATGCCGATTTTTCCGCTGAACCGAGCCATC------
#=GS AraTha-snoR29/1-106 DE 25S:G2381,25S:G2404 Arabidopsis_thaliana SnoR29-1 http://snoopy.med.miyazaki-u.ac.jp/snorna_db.cgi?mode=sno_info&id=Arabidopsis_thaliana300058
AraTha-snoR29/1-106 ----GGCAGTGATGACTCGGAAA---TTTCAAGCTCAACAGACCGGAATTA---GGCGTTTCTTCCAATTTAT---TGGTTGAGTCGTTTCTGTGTCGATAACCCCGCTGATCTGAGCC---------
#=GS SchPom-snR88/1-84 DE Schizosaccharomyces_pombe snR88 http://snoopy.med.miyazaki-u.ac.jp/snorna_db.cgi?mode=sno_info&id=Schizosaccharomyces_pombe300057
SchPom-snR88/1-84 ---TATCGAGGAGGATAAAAATGACATGTCAAGCTCAACAATATGAAAAA-------------------------------TTATGATTTTTTTCTATTTCTTCACTT---TCTGAGATGT-------
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