snRcnag12441¶

snRcnag12441_intronic-boxCDsnoRNA-151nt-in-transcript-as-CNAG_12441.
Within intron of a transcript for a non-coding RNA (as CNAG_12441)
Possible targets for D’ guide in 18S rRNA: gttGctaga, or in 25S rRNA: attGtcagg with D’ box cgga
Nucleotides that are modified could be shifted if D’ box is ccgg instead
Possible target for D guide in U1 snRNA: cttGccttg
No orthologous modifications in yeast or human for either guide.
Putative alternative targets [1] for either guide have not been checked.
>AE017344.1:c1267651-1267501 Cryptococcus neoformans var. neoformans JEC21 chromosome 4 sequence
ACCCTATGAAGAAACATCTGGTAATCCGGAACTACCCACCCGGCTTTTCACAAAGTGATAAGTTTCTACC
ATTGTTCCTCTGCGCCTCCGGGGCGAGGTTGGGAGAAGACTTTGGGTGTGGAAGGGGAAGTCAAGGCGAG
ACTGAGGGTCA
Image source snRcnag12441 (plus context):
# STOCKHOLM 1.0
#=GF RW van Nues, August 2023
#=GF https://coalispr.codeberg.page/paper
Annot_25S-U1/1-49                      -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGxGT---------------------------------------------------------------------------------------------------------------------------------------------------------------RTGATGA------GGACUGUUA-CTGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RTGATGA-GUUCCGUUC-CTGA--------------------------------------------------------------------------------------------------------------------------------------------------YAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Annot_18S/1-9                          ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAUCGUUG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS transcript-as-CNAG_12441/1-634 DE 699nt-with-intronic-boxCDsnoRNA-166nt- ncrna 4:1267107:1267806
transcript-as-CNAG_12441/1-634         -----------------------------------------------------------------------------------------------------------------------------------------------------ACGATGAAGTCCGATCAAGGTCCAAGCATTGACAGTACAGTCTTACCAGTGATAAAAGAAAGTAGAGAATAGGATGGTTTATCTGGAAC--ACCATTTGTCAGCAGCTGCGATCGCGTTATGAAAGGTGGGTTCTTT--------------------------------------------------------------------------------------------------------------------------------CTATCTATCCTTAGTAATCCAACCCTATGAAGAAACA--TCTGGTAATCCGGA---------ACTACCCA---CCCG-------------------GCTTT----TCAC--AAAGT---------------------------GATAAG-----------------------------------------------------------TTT---CTACCATTGTT---CCTC-TGC----GCCT---CCG--GGGC------GAGG--TT-GGGAG-----AAG-----------------------ACTT-----TGGGTGTG--GAAGGGGAAGT-CAAGGCGAGACTGAGGGTCAAATGCCATTTTC-GCTATGGTTCCAGTATGTCTGGTC-----------------------------------------------------------------------GGCAAGCTGACTGATCGG--------------CAGGGACTATTTTCAC-CAGTCTGCAGCGGCGTATTTGAACAGCAACTAGC-ACATATGGAGCCTCACAAAGTTCTTATAATGCAGCATTTTATCCTTGTATGTTTTTTCCTTGGGAAAATTTGGAAATCTT-TACTACTTCTCTTGCGAACCTTCCTTTCTTACTACGTTATTACGTATTGCTAATATGGTTGTTGTACTGTCATGTCGCATTGCGCCAAGTTCCCCCTATGTATTTACTACTTGTCTTACCAGCGCCAACATGAAAGATTTCTG
#=GS snRcnag12441/5-155 DE intronic-boxCDsnoRNA-166nt-as-CNAG_12441 ncrna 4:1267500:1267650:-1
snRcnag12441/5-155                     ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCCTATGAAGAAACA--TCTGGTAATCCGGA---------ACTACCCA---CCCG-------------------GCTTT----TCAC--AAAGT---------------------------GATAAG-----------------------------------------------------------TTT---CTACCATTGTT---CCTC-TGC----GCCT---CCG--GGGC------GAGG--TT-GGGAG-----AAG-----------------------ACTT-----TGGGTGTG--GAAGGGGAAGT-CAAGGCGAGACTGAGGGTCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS in-CNAG_12441/1-151 DE 5: [542,554 - 542,705] (+151)
in-CNAG_12441/1-151                    ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCCTATGAAGAAACA--TCTGGTAATCCGGA---------ACTACCC---ACCCG-------------------GCTTT----TCAA--AAAGT---------------------------GATAA-----------------------------------------------------------GTTT---CTACTATTGTT---CCTC-TGCA----CCT---CCG--GGG----C--GAGG--TT-GGTAG-----AAGT-----------------------CTTC-----GGGTGTG--GAAGGGGAAAT-TAAGGCGAGACTGAGGGTCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS H99-CNAG_12441/1-766 DE chromosome:CNA3:5:542251:543016:1
H99-CNAG_12441/1-766                   --CGTGAGGAAAAAGTCGGCGGAAGCTGTTGGCGTGCCTAAAAAGTATGCATACCTAATTTTTTAAGAGGAGGCCGAGGAGGCAGATCACCACGTGCCTGACTATTTTACGTAAGTAAGACACCACATTCTTCTGGTGACGATAAACGAAGAAGTCAAGGTCCAACGAAGCAGCTACAGTAAGGTATAGTCTTACCAGTGAT-AAAGGAAGCAGAGAATAGGATGGTTTTTCTGGAACGAATCATTCATCAGCAGCTGCGACCGCGTTATGAGAGGTGAGTTCTTTC--------------------------------------------------------------------------------------------------------------------------------CATCTATCCTTAATAATCCAACCCTATGAAGAAACA--TCTGGTAATCCGGA---------ACTACCC---ACCCG-------------------GCTTT----TCAA--AAAGT---------------------------GATAA-----------------------------------------------------------GTTT---CTACTATTGTT---CCTC-TGCA----CCT---CCG--GGG----C--GAGG--TT-GGTAG-----AAGT-----------------------CTTC-----GGGTGTG--GAAGGGGAAAT-TAAGGCGAGACTGAGGGTCAAATGCCATTTTTTGCTATGGTTCCAGTATGTGTGGTC-----------------------------------------------------------------------GGCAAGCTGACTAGTCGG-------------------CAGTGACCCTTTTCATGCAGTCTGCAGCGGCATATTACAACAGCAATTAAC-ACATGCAGCATCATT--AAGTCCTTATAATGCAGCATTCTATTCTTGTACGTTTTGCCTCGGGAAAGTTT-GGAAATCTT-TACTACTTTCCTTGCGATCTTCTTTTCTTATTACGT----------CGTACCGCTAGTATGGTTGTTATCTGTCATTGTTGCCTTCTGCCAAGTTGCGCTCTATGTATTTACTGCTTCCATTACCAGCGCCAACATGA
#=GS WM276/1-639 DE chromosome:ASM18594v1:D:1718023:1718676:-1
WM276/1-639                            CGTCGATACCATTCGTCGTTAGGAAAAAGTCGGCAGAAGATGTTGGCGTGCCTATCTGGAGAC-----TTTTAATACGACGGCTGACCGGCTCGTGCCTGATTCATTTACGTAAGTACA--AACCGGTCACGACATTTTCTGACCGTGACCATGA------GTGAAGCAGATAGAACAGTTAA-AGTAG-GTTCACAGTGATAGAGGGAAGTACCAGATACGATGGT-TCTCTGGAACGAACG--TTTTCAGCATTTGTGATCACGTTGTGAAAGGTGGGTTCTTTT--------------------------------------------------------------------------------------------------------------------------------CCATCTATCCCTAGTATCCAACCCTATGAAGAAACA--TCTGGTAATCCGGA---------ACTACCCA---CCCG-------------------GCTTT----TCA---AAAGT---------------------------GATCA-----------------------------------------------------------GTTT---CTACTATTATT---CCTC-TGC--GTCCCC--CGCT--GGGGGC----GAGG--TC-GGTAG-----AAAT-----------------------ATC-----TGGGTGTG--GAAGGGGAAGT-TAAGGCGAGACTGAGGGTCAAATGCCATCTTTTACCATGGTTCCAATATGTGTGGCC-----------------------------------------------------------------------GATAAGCTGACTAATTGG-------------------CAGTAACTACTCTTACCCAGTCTCCAGCGGCGTATTTGAGTAACATTTCAGGACATATATAGTCTCAGTAAGTCCTTG--ATGCTGTATTCTATTCATGTATGTTTTGCCTGGGGGATGTTTTAGAAATCTTTTTCTACTTT---------------------------------------------------------------------------------------------------------------------------------
#=GS EJB2/1-640 DE supercontig:Cryp_gatt_EJB2_V1:supercont1.83:166777:167430:-1
EJB2/1-640                             CGTCGATACCATTCGTCGTTAGGAAAAAGTCGGCAGAAGATGTTGGCGTGCCTATCTGGAGAC----TTTTTAATACGACGGCTGACCGGCTCGTGCCTGATTCATTTACGTAAGTACA--AACCGGTCACGACATTTTCTGACCGTGACCATGA------GTGAAGCAGATAGAACAGTTAA-AGTAG-GTTCACAGTGATAGAGGGAAGTACCAGATACGATGGT-TCTCTGGAACGAACG--TTTTCAGCATTTGTGATCACGTTGTGAAAGGTGGGTTCTTTT--------------------------------------------------------------------------------------------------------------------------------CCATCTATCCCTAGTATCCAACCCTATGAAGAAACA--TCTGGTAATCCGGA---------ACTACCCA---CCCG-------------------GCTTT----TCA---AAAGT---------------------------GATCA-----------------------------------------------------------GTTT---CTACTATTATT---CCTC-TGC--GTCCCC--CGCT--GGGGGC----GAGG--TC-GGTAG-----AAAT-----------------------ATC-----TGGGTGTG--GAAGGGGAAGT-TAAGGCGAGACTGAGGGTCAAATGCCATCTTTTACCATGGTTCCAATATGTGTGGCC-----------------------------------------------------------------------GATAAGCTGACTAATTGG-------------------CAGTAACTACTCTTACCCAGTCTCCAGCGGCGTATTTGAGTAACATTTCAGGACATATATAGTCTCAGTAAGTCCTTG--ATGCTGTATTCTATTCATGTATGTTTTGCCTGGGGGATGTTTTAGAAATCTTTTTCTACTTT---------------------------------------------------------------------------------------------------------------------------------
#=GS CA1280/1-643 DE supercontig:Cryp_gatt_CA1280_V1:supercont1.2:497542:498195:1
CA1280/1-643                           CGTCGATACCATTCGTCGTTAGGAAAAAGTGGGCAGAAGATGTTGGCGTGCCTATCTGGAGAC-------TTTTCACGACGGCTGAGAGGTTCGTGCCTGATTTATTTACGTAAGTAAA--AACCGGTCACGACATTTTCTGGCCGTGACCATGGA-GTCATGTAAGCAGATAAAACAGTTAAAAGTAG-GCTCACAGTGATAGAGGGAAGTACCAAATACGATGGT-TCTCTGGAACGAACG--TTTTCGGCATCTGTGATCACGTTGTGAGAGGTGAGTTTTTTT--------------------------------------------------------------------------------------------------------------------------------CCATCTATCCTTAGTATCCAACCCTATGAAGAAACA--TCTGGTAATCCGGA---------ACTACCC---ACCCG-------------------GCTTT----TCA---AAAGT---------------------------GATAA-----------------------------------------------------------GTTT---CTACTATTGTT---CCTC-TGC--GTCCCC--CGCC--GGGGGC----GAGG--TC-GGTAG-----AAAT-----------------------CTCC-----GGGTGTG--GAAGGGGAAGT-TAAGGCGAGACTGAGGGTCAAATGCCATATTTTATCATGGTTCCAATATGTGTGGCC-----------------------------------------------------------------------GATAGACTGACTAATCGA-------------------CAGCAACTACTCTTACCCAGTCTCCAATGGCGTATCTGAGTAACAGT-CAGGAT---TATAGTCTCAGTAAGTCCTTG--ATGCTGTATTCTATTCATGTATGTTTTGCCTGGGGGAAGTT-TAGAAATCTTTTTCTACTTCTTTGC----------------------------------------------------------------------------------------------------------------------------
#=GS IND107/1-647 DE supercontig:Cryp_gatt_IND107_V2:supercont2.1:513876:514522:1
IND107/1-647                           --------------------------------------------------------------------------------------------------------------------AAA--AACCGGTCACGACATTTTCGGACGGTGACCTTGTAAGTCATGTAAACAGATAGAACAGTTAA-AGTAG-GCTCACAGTGATAGAGGGAAGTACCAAATACGATGGT-TCTTTGGAACGAATG--TTTTCAGCATCTGTGATCACGTTGTGAAAGGTGGGTTCTCTT--------------------------------------------------------------------------------------------------------------------------------CCATCTATCCTTAGTATCCAACCCTATGAAGAAACA--TCTGGTAATCCGGA----------CTACCCA---CCCG-------------------GCTTT----TCA---AAAGT---------------------------GATAA-----------------------------------------------------------GTTT---CTACTATTGTT---CCTC-TGC--GTCCCCC--GCC-GGGGGGC----GAGG--TC-GGTAG-----AAAT-----------------------ATC-----TGGGTGTG--GAAGGGGAAGT-TAAGGCGAGACTGAGGGTCAAATGCCATCTTTTATCATGGTTCCAATATGTGTGGCC-----------------------------------------------------------------------GATAAGCTGACTAATCGA-------------------CAG----TACTCTTACCCAGTCTCCAGCGGCGTATTTGAGTAACAGT-CAGGACATATATAGTCTCAGTAAGTCCTTG---TGCTGTATTCTATTCATGTATGTTTTGCCTGGGGGAAGTT-TAGAAATCTTTTTCTACT---TTGCGAATCTTCTTTTCTTACTACGTATCAGTGCCTCGTATGGTTGTACTATCAGATCGCCTTCTGCAAGTTGTCCTCTATGTATTTACTATTTGCATCACCAGTGACAACATGAAAGATGC------
#=GS R265/1-608 DE URS00021BAC21_294750 ENA|CP025760.1:1667188..1667865:ncRNA|CP025760.1:1667188..1667865:ncRNA.1 Cryptococcus gattii VGII R265 hypothetical RNA
R265/1-608                             ------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGATAAAACCGTTAA-AGTAG-GCTCACAGTGATAGAGAAAAATACCAAATAC-ATGGT-TCACTGGGATGAACG--TTTTCAACGTCTG-GATCACGTTGTGAAAGGTGAGTTCTTTT--------------------------------------------------------------------------------------------------------------------------------CCATCTATCCTTAGTATCCAACCCTATGAAGAAACA--TCTGGTAATCCGGA---------GCTACCCA---CCCG-------------------GCTTT----TCA---AAAGC---------------------------GATAA-----------------------------------------------------------ATTT---CTACTATTGTT---CCTC-TGC--GTCCCC--CGCC--GGGGGC----GAGG--TC-GGTAG-----AAAT-----------------------CTC-----TGGGTGTG--GAAGGGGAAGT-TAAGGCGAGACTGAGGGTCAAATGCCATCTTTTATCATGGTTCCAATATGTGTGGCC-----------------------------------------------------------------------GATAAGCTGACTAATTAA-------------------CAGTAACTACTTTCACCCAGTCTCCAGCGGCATATTTGAGTAACAGT--CGGACATATATGGTCTCAGTAAGTCCTTG--ATGCTGTATTCTATTCGTGTATGT-TTGCCTGGGGGAAAGTTTAGAAATCTTCTTTGCGAATCTTCTTATCCTTACTGCGTATCACTGCCTCGTATGATTGTACTGTCAGATCGCCTTCTGCAAGTTGTCCTCTATGTATTTACTATTTGCATCGTTAGTGACAACATGAAAGACGCCTCGGAAAAAGCAA
#=GS Ram5/1-647 DE supercontig:Cryp_gatt_Ram5_V1:supercont1.2:985805:986458:-1
Ram5/1-647                             CGCCGATACCATTCGTCGTTAGGAAAAAGTCGGCAGAAGATGTTGGCGTGCCTATCTGGAGACCTACGTTTTTTTACGACGGCTTACCGGTGCGTGCCGGATCCGTTTACGTAAGTAAA--AACCGGTCACTTCATTTTCTGACCGTGACCGTGAAGTCA-TGTAAGCAGATAAAACCGTTAA-AGTAG-GCTCACAGTGATAGAGAAAAATACCAAATAC-ATGGT-TCACTGGAATGAACG--TTTTCAACGTCTG-GATCACGTTGTGAAAGGTGAGTTCTTTT--------------------------------------------------------------------------------------------------------------------------------CCATCTATCCTTAGTATCCAACCCTATGAAGAAACA--TCTGGTAATCCGGA---------GCTACCCA---CCCG-------------------GCTTT----TCA---AAAGC---------------------------GATAA-----------------------------------------------------------ATTT---CTACTATTGTT---CCTC-TGC--GTCCCC--CGCA--GGGGGC----GAGG--TC-GGTAG-----AAAT-----------------------CTC-----TGGGTGTG--GAAGGGGAAGT-TAAGGCGAGACTGAGGGTCAAATGCCATCTTTTATCATGGTTCCAATATGTGTGGCC-----------------------------------------------------------------------GATAAGCTGACTAATTAA-------------------CAGTAACTACTTTCACCCAGTCTCCAGCGGCATATTTGAGTAACAGT--CGGACATATATGGTCTCAGTAAGTCCTTG--ATGCTGTATTCTATTCGTGTATGT-TTGCCTGGGGGAAAGTTTAGAAATCTTCTTTGCGAATCTT------------------------------------------------------------------------------------------------------------------------------
#=GS CryWin/1-690 DE AWGH01000004.1:c56570-55709 Cryptococcus wingfieldii CBS 7118 supercont1.4, whole genome shotgun sequence
CryWin/1-690                           -----------------------------------------------------------------------------------------------------------------------------------------------------CCTAACTCGACGAAAGACGCGCAGATTTCGGCCTTTCAGCCAAAACAATTCCATTTGGTTCTCTGCTTCCTACAATCTACTAATCTACTAATCTACAATCTCAGAACGACTTCTGTACATTATCAGGTAAGACCGTGGT---------------------------------------------------------------------------------------------------------------------------------------CCCCCTGCATCAGCCCTGTGACGAAGAA--TCTGGTAAACCGTA---------GCTACCC---ACCCAGGCGACAGGCTTCTCG--GCAGTC----TTG---GACTGC-TTTTAGCGGGGAGTCTGGAGGTT--ACATC----------------------------------------GGGCCT--CTGTTTGCT-CTCTGT--GCATC---GTA--GCAGTA--A-----TCC--TTCG--GGA------TGCTGT--A-GGTGC-----CAGAGTA-GGCGAGTAGTAGGCCT---GTA------GGGTGTG--GAAGGGGAAGT-AAAGGCGAGACTGAGGGCTTCAAAGTGTGGCGGGTTCAATGGATC-----------------------------------------------------------------------------------GAGACGCTGACAGACGACTCG----------------TAGTGGATCCCAAGTGGTGTGCATTCTCACTCTATACTCCTGCCTCGCGCCTCTGTATGACGTGAACGTTGAAGGAACTGCAGATGCATAAAGAGTGGAGTGAGCCTGGAGACCGGGGACAAACATGATTTACAGCTGGTCGAGCATGCACACATCTCCTCTCCCCCTGCACTGACGAGGCTGTGCCCCTGTGCCCCTGCCCAGACGGGATGGATACATACT-TTACTCTGGAAGTCTGGATTGCCTCTGTGGCGATGTCACCTCAACCCG
#=GS CryAmy/1-635 DE supercontig:Cryp_amyl_CBS6039_V3:supercont1.3:999375:1000009:1
CryAmy/1-635                           -------------------------------------------------------------------------------------------------------------------------------------------------------------GACGAAAGACGCGCAGATG-----CTTTCAACCAAAACAGTTCCATTTGCTTCTCTGCTTCCTA-----------------------CAATCTCAGAACGACTTCTGTACATTATCAGGTAAGACCGTGGT---------------------------------------------------------------------------------------------------------------------------------------CCCCCTGCATCAGCCCTGTGACGAAGAA--TCTGGTAAACCGTA---------GCTACCC---ACCCAGGCGACAGGCTTCTCG--GCAGTC----TTG---GACTGC-TTTTAGCGGGGAGTCTGGAAATT--ACACC----------------------------------------AGGCCT--CTGTTTGC-TCTCTGT--GCATC---GTA--GCAGT--AA-----TCC--TTCG--GGA----C--GCTGT--A-GGTGC-----CAGAGTAT-GCGAGTTGTAGGCCT---GTA------GGGTGTG--GAAGGGGAAGT-AAAGGCGAGACTGAGGGCTTCAAAGTGTGGCGGGTTCAATGGATC-----------------------------------------------------------------------------------GAGATGCTGACAGACGACTTG----------------TAGTGGATCCCAAGTAGTGTGCATTCTCACTCTATACTCCTGCCTCGCGCCTCTGTAGGACGTGAGCGTTGAAGGAACTGCAAATGCATAAAGAGTGGAATGAGCCTGGAGACCGGAGACAAACACGATTTGCAGCTGGTCGAGCATGCACACATCTCCTCTCCC--TTCACTGACGAGGCTGTGCCCCTGTGCCCCTGCCCAGACGGGATGCATGCATACA--CATACC------CTGCATTGCCTCTGGGGCGATGTCA----------
#=GS CryFlo/1-223 DE RRZH01000003.1:1073504-1073726 Cryptococcus floricola strain DSM 27421 chromosome 3, whole genome shotgun sequence
CryFlo/1-223                           ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCCTGTGACGAAGAA--TCTGGTAAACCGTA---------GCTACCC---ACCCAGGCGACAGGCTTCTCG--GCAGTC----TTG---GACTGC-TTTTAGCGGGGAGTCTGGACGTT--ACATC----------------------------------------AGGTCT--CTGTTTGCT-CTCTGT--GCATC---GT--AGCAGT--AA-----TCC--TTTG--GGA----C--GCTGTT---GGTGC-----CAGAGTA-GGCGAGTAGTAAACCT---GTA------GGGTGTG--GAAGGGGAAGT-AAAGGCGAGACTGAGGGCTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS NaeEnc/1-595 DE MCFC01000054.1:77489-78430 Naematelia encephala strain 68-887.2 BCR39scaffold_54, whole genome shotgun sequence
NaeEnc/1-595                           -----------------------------------------------------------------------------------------------------------------------------------------------------AGGTTTAAAGCGGTGACGCCAACATTGGACCAACAGTTCCTGCACCTACGCCTCTTTAAACCTTTTCTTCCCATTCATTCACTTTTCGTCTGCCAGCTATGCCCAGAGAATGTAGAT-TACAC--GGTGAGACA------------------------------------------------------------------------------------------------------------------------------------ACCTCTCCATACTTCC-TATACCCTATGATGATCCAA-TCTGGTAATCCGTA--------CCC-ACCCA------T--------------------TCTC---TTCT---GAGA-----------------------------------------------------------------TT---------------------------------------------AGTGT------GTAGCT--TTCC--AGCTAT-CG-ACACT------------------------------------------T------TGGGTGTG--AGAGGGGAATGTTAAGGCGAGACTGAGGGTTACAACATGACATGCTTTGGATACGAACTCGTTGA---------------------------------------------------------------------------TGGTCGCTGACTCGATCA-------------------CAGTTTGCGAATCCGTCTTTGATACATCGCATTGTAAATCCAGTTGGATATTTCCAAGTTCACGTCACTCGACCCATACCATACATTTGTACATTCTTACATATCGCATTGTCTAGTCTACATCATTCATTATTATGCATTAGCCTCATACGTCTGGACGTTCTTTTGCCATTATTGCCACCGAGAGACGAGGTTTGAATCAAAAACGCCGCAAACTCCGCCTCGTGGCCTTGTCGCGTCTCGCCGTTAGACTAGAGTTGCCCAGTCTGAC
#=GS KwoSha/1-527 DE NQVO01000023.1:c90661-89711 Kwoniella shandongensis strain CBS 12478 scaffold00023, whole genome shotgun sequence
KwoSha/1-527                           -----------------------------------------------------------------------------------------------------------------------------------------------------ACGAGCAAGTTAACGGAAACCTGTTTCCAAAACCGCGTACTGTTTTGTATCACATCTCATTTGCAGAACTGTATGATATTTTGATCTTTAGTACAGCATCAACAACTACAATGCCTAAAACCAATCGTGAGCATCCCACATA--------------------------------------------------------------------------------------------------------------CATTCACATCCTCATCGACCACACTCCCTCCTCTACCCTACGAAGATAAA--TCTGGTAATCCGTCCTA-----CCC-ACCCGCC----------------CGTTCACACAAAC---ATCAC--GTTCGTG------GAACG-------------AAAGAG------------------------------CTAAAC-------------------------------------------CTCCT---C-TGGTGCT--TTTT--GGCATCA---AGGGG------------------------------------------A----GGTGGGTGTG--AAAGGGGAAATTAAAGGCGAGACTGAGGGTTTTCTCTTCACCATTCCATGCTTCCTCCCGTCCGTTGCCAAATGGTGGTCTATTGTAAACACAAAGCACTAAG-------------------------------------CGGTCGCTGACTCGCT---------------------CAGTTCCAGTTCGATAGTTGTCTTGTCAATAGCTCAATAGCTCCGATACTGCTAGATACCGACACGTGACATGCTACGATCAATTCATATTGCTATGTCACATACTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS KwoHev/1-829 DE ASQC01000039.1:c64215-63280 Kwoniella heveanensis CBS 569 cont2.39, whole genome shotgun sequence
KwoHev/1-829                           -----------------------------------------------------------------------------------------------------------------------------------------------------CTTATCTGTTTGCTATGCACGCGACGACTTCTTGAGGAGCACCAAGTAGAATACTAGGGTCAATTGACCAGCGAGCTTGGTGCGAGAAGGCAGAGAAGCAGCGCTCTGAAGCTGGATGTAACACATGTGAGTCTATGCTCCGAACTAGACTTCCAGCCTCGGTACTCCCTCCCTC------CCTCACCTTTCAAATCACTTATCACGGTGTACTGTAAGACTCCATCTTTTCCAAACTCGGCCATTCATCTACCCTCAACCCCCAAACCCATACCCGATCTATAAAGCCCAATGACGAAAAA--TCTGGTAATCCGCA------------ACTTT----------------------------GAT---ATCA---ATC---------------------------GAACACAA----------------------CAATTCACACACCCAGC-------------------------CGTCTT---G-----GCCT--------TGTC-CTACAT-GATA------AGGC---A-GAGGCG----------------------------CGAAGCACT--AGGGTGTG--GAAGGGGAAATTTAAGGCGAGGCTGAGGGCTTTTCTTCGATACCCATCTTCTATTTGGAATCCACTGCCTTGACAATAGTTCCAAATCTTTGAATCTTCTGGTGCTCGAGGCGCACAGGGGAAGAGAGATTGTTGTCGTCTGATAGCTGACTGCTGAATGGCTTCCTCAACA-----TAGACATAGGTTCTCGTCAAGCAGTCCAGCCTCGACTCAAGGACTTTCACCACGACTGTGATGTGGATCTGGCCGGACTTTCTCGAACCGATGCACCAGGAGAGATCTGTTCAGGCTGTCGACGTCGTTCTACTCAGTTTTGCGGCAAACAGCCCCTCTCTCGTGTACTCGATTTCGACGCCAGTATGGGTGCCATTGGAGACGTGTTGTCGCATGATACTGACCCAGATATACACACTCATCAATGACGCTAA-----------------
#=GS KwoDej/1-623 DE supercontig:Cryp_deje_CBS10117_V1:supercont1.1:716861:717493:-1
KwoDej/1-623                           ----------------------------------------------------------------------------------------------------------------------------------------------------------TGAGCTACATCTATCTGGCATGACTCCCAAACAGCTTCGATCCTTGTCTGAATATGCGAATGACTAGCGACTTGATCCAAATAAGAAGCATAAGGAGCTCATAGGGATGGTATGAGCTGAGGTGAGTCGTCAATAC---------------------------------------------------------------------TTGTGT--------------------CTCCTCCTTTTGTGCTCCTCTGTGTTCCGAAGGTGAAGGCGAGAACAAACGCTCGATGACGATAAA--TCTGGTAATCCGTTG-AACGA-CAT-ACCC------TC------------------CCAAGTATCACATCTGACTTGG--------------------------TCCGC-------------------------------AGAA---------------------------------------------CTTC---------TCC---TC---GGA-------GAAG-----------------------------------------GTAGAC----GGGTATG--GAAGGGGAATA-TAAGGCGAGACTGAGAGCTGTCCTCTTGACTGTTTTTCTCCCAACGATTAGTGTCACTAAGGTTA--------------------------------------------------------------CCAATGGCTGACGAATGCTT------------------CAGGCGATGTGGTAGTATAGGGCATATATTCACTCCTTTATACAGCAATCTCGCTGCATAGATCAAATTCATATACAACTGTGCGATCATATGAACTTCGCAACTCATGCACCCTCTCGGTGTATTCGTTATACGACTCTGGGCCAACTATCCCAACTTCGCCCAACCCCCGTCTACAAGACACGAACTCTCTTCTTGGCTTGAGACCGTTCACTCGGAGTAATATAATC-----------------------------------------
#=GS KwoMan/1-206 DE ASQE01000006.1:528757-528925 Kwoniella mangroviensis CBS 8507 cont2.6, whole genome shotgun sequence
KwoMan/1-206                           -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTTATTTGGTGAGTTTCCATCGTGACTCATCTTCCATCTTCACCCATCAATCGTCGTTCAAAAGCTCGATGAAGACAAA--TCTGGTAATCCGTTA-------CAT-GTTC----------------------------TTGT---CGG----ACAA--------------------------TCACATACCCTATC-CACCTCTT--GATGG-----TTTAGTTCA------------------------------------------------------CACTC--AGAC--GAGTG---------------------------------------------------CAAC-----GGGTATG--GAAGGGGATGTATAAGGCGAGACTGAGAGCTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS BulAlb/1-709 DE CAMYTR010000156.1:685420-686035 Bullera alba genome assembly, contig: jcf7180000012257, whole genome shotgun sequence
BulAlb/1-709                           -----------------------------------------------------------------------------------------------------------------------------------------------------AAGTTGTTGACTTGCAATACACATGTTGTGCAGGACAGACTGCACGGGTACTATAGATATCGTCTAAGGGTATTGGAAGCTCGAAGGCCCTCCATCATGCGAAACAGCGGACGTCCAGGACAAAGCGTGAGTGAGTTCAG----------------------------------------------------------------------------------------TCATGCGAAACAGCGGACGTCCAGGACAAAGCGTGAGTGAGTTCAGCCATACCCCACTTCCCGAGGACGATTCAC-TCTGGTAATCCGTACA------CCC-ACCCT------C--------------------CCTC---TTTC---GAGG-----------------------------------TTTTG---AT------CAGAA-------------------------------------CCGC--CCCTC------CTGGCGG------GCTTTG--GAAA--CGAAGC---CCGTTGGTGTGGGGG-----CGG-----------------------AGAAT----AGGGTGGG--GAAGGGGACCGTAAAGGCGAGACTGAGGGAACATCGGGTAATGAAGGGCTATTCTGGCTGTTGGATTCGGTGTAAAATCAAGCACGCGAGAA------------------------------------------------GTTTGGCTGACCATGATCA-------------CAGGTCGTAACGGTCTCACGTTCATTCGCTTGTATGCAATACATGCTTGTCAACGCGTAGCCTCGTCATCACTCGCGACTTTGAATAGAGCCGGGAGAATTGACGCCCGTCGCTGAGCGCTGTCTCTCTCTTATTAGGCAGCCTGTGGTACCCCGTGACTGTCTGACACCAGAAGCTGGTGACACCTGCCTTTGCGTCTGATACTGCCCCTTGTCCGCTGAAACTTGCTCAGCTGGGAACATGGGCATGTCACATTGCGGCCAGAACGAAA-----
#=GS CryDep/1-621 DE supercontig:Filo_depa_CBS7841_V1:supercont1.29:42248:42884:1
CryDep/1-621                           --------------------------------------------------------------------------------------------------------------GGAAAATATCAAAAAGTTGTCGAGTTGCGCGCCTATTGTTCTCTGTGCTATTCGCGCCTAAGTCCGAATGATAATTAATATGGCTTTTAATATTTACATTCTATACTTTTGATACTACATCTATACGTCCAACACTACATTTATACTTTTTGATAACATAAACAGGTAAGCTG-----------------------------------------------------------------------------------------------------------------------------------CCTCTCATATCATCCTTAGTGGCCCTATGAAGACACA--TCTGGTAATCCGTC---------ACTACCCA--CCCAA-----------------------------------------------------------------ACATATA---CCC-ACCCGCCC--GGG----------------------------------------------------------------------------CGAAAA----------------------------------------------------------T------TGGGTGTG--GAAGGGGAAAT-AAAGGCGAGACTGAGGGCC----------------------------------------------------------------------------------------------------------------CTCCTGATCTA-----------------------CAGCAATATGATACTCTGCTAACAAAGATACCCAAGTACAATGCTCAAATCTTTGCCCAGTTTTCCATTGTCAAGACAACTCGGCAAGTAACCTGTAGCGCATCGAAAGCCGTCAACTGGCCAGCGCTCTGTTTTGTACGTGTTAGTCTTGATTAGTGCCAGCCACGACTCAAAGATCAACGGCAACTAGCTGCTGGCCCGTTGCACAATGTGTATGGCATGAACCTTTATATCATTCATTATTGGCAACTTTCACTGAACAATGCATTTG
#=GS TakKor/1-623 DE BCKT01000010.1:1089880-1090814 Takashimella koratensis DNA, scaffold: scaffold_9, strain: JCM 12878, whole genome shotgun sequence
TakKor/1-623                           -----------------------------------------------------------------------------------------------------------------------------------------------------GCCTATCCTCTGAGCTGGTCTGCACGCCTATCCCATTGGCAAATTCCTCTTGAATGGTTACCCACAACGTCAACATGACCATCAACATCGGCACTCAGCCCAGCCCAGCTCGCAACTCAGCACAAGGTGAGTCCCACAACGT-----------------------------------------------------------------------------------------------------------------CCATTACCCCGTACCCACCCACTCCACCCACCTCCAGAGATGAAGCAATTCTGGTAATCCGCAACACC--TTCG-ACCC---------------------CAG--GCGAGG--CTCGT---CTTCGT-------TTG------------------------GTGTTCGATCCACATATAC--------CCACCC----------------------------------------------GC-------CCGGG-CGAAAA-CTCGG--T--GC---------------------------------------------T-------GGGTGTGAA--TGGGGAAGC-AAAGGCGAGACTGAGGAGGTGGTC----------------------------------------------------------------------------------------------------------CATGTTGATCAAGCAAGAGTAG-------------CAGCTAACAGATAGACTTGTATCTTTAGGTGGTTGTCTCGTGGATCGCTGTCCCAGTCACGTCACCATGTATCAATCACTGTTGTACCCCAGCTCTTCGCTCAAAACCTGTTCCACCACCTCACATTCGCAACTTGCCATGTCATACTCGAGTAGGACGGATGACGGATGGACTAACCGACTGATCGACTGACCGTGCAACACCTTCCGCGTATCCACTCCCATCGTCACCATCTTATCTTCTCACCTAGTTCTGGTCTGTTCAACACAAA
#=GS VanHum/1-830 DE QKWK01000005.1:c1312645-1311810 Vanrija humicola strain CBS 4282 CBS4282_scaffold05, whole genome shotgun sequence
VanHum/1-830                           -----------------------------------------------------------------------------------------------------------ACCAAGGTGTGCCACATCCAGCTCGGCACGACGCCCAAGCCGATGCTCACGTGGGGCCCGGACCACCCCGACCTGTTCACCACCGCGCTCGGCTGGCTGCGCGAGGACCGTGACCTCCGCCGCGTGAAGGAGGCCGCGCGCGGCCGTGTCCGCGGGCCCAAGGCTGAGGTGGGTTCCTTCTTGTCTCGCTGACGCTGACCCGCCAGACCAAGGACGCAAAGACGTTCTTCGAAAAGTACGACTACAGCAAGCGCTAAGCGCCGCG------CCAACACACGCGTCATTGCACGCCCCACCTAACTTGTGCGTTTCCTGTCTCGGCCACACCCGGTGATGATAAAA-TCTGGTAATCCGCA--------CGC-ACCC-------C---------------------GCC---GCAA---GGT----------------------------------------------------------------ACACG------------------------GGCG------------------------------CGG--GCAA--CCG-------------CAG----------CGCC-----------------------GTG------GGGTGCG--GGAGGGGACGT-TAAGGCGAGACTGAGGGTGTGGCCGGGTCGTGGCTCTGCCGCTTGCGCCGGCGCGTGCTGACGTCCGTCCCAGTCAACACTGTTACACCACCATCACCTGTTGT---------------CAT---------CCACTGACACGCTGTACATCAACTGCACGCATTGTAGCATCAACTGCATGGCATCGCATGGGATAAACGAGAAACTAGATTACATGTCACAGAAAATAGATGAGAAATGCATCGCAATTCACCTTGTGCGGCTGTGGGGGTGTGGGCGGGGGACGAGGCTCGTGAGGTAGAGCGAGATCACGCACAAAGTCGCCACGCGTCAAGTTTACTCTGTGTACTCGGTGTGCATGATGTGTGTGTACTATACTGCTGGCGTCCAGCGTCCTCGTCGCCTAACACCAGCTTGCTACTATATGTCTGTGGGA
#=GS VanFra/1-748 DE BEDY01000005.1:178554-179490 Vanrija fragicola DNA, scaffold: scaffold_5, strain: JCM 1530, whole genome shotgun sequence
VanFra/1-748                           CTGTTCAAGGTTGCCCTTGGCTGGCTGCGCGAGGACCGCGAGCTCCGCCGCGTCAAGGAGGCCAGCCGTGGCCGTATCCGTGGCCCCAAGAACGACGTAAGCCAACTTGCTGAGACTTGGAATTGTAATTGACCATCCAGACCTCGTACAACGGCAACGCCGAGACCTTCTTCAACAAGTACGACTATTCGCACTAGACGCTGTCAACCAACGCCTTGCGAAATTCAGTCACAGCCCCTTTGTGCTCTTACATTGCTAAACTATTACATCAACTGGTGAGTGCGCG-------------------------------------------------------------------------------------------------------------------------------CTTTCAATGTCCCCATCCGCACACCCTGTGACGAAAATA-TCTGGTAATCCGCA--------CGC-ACCC-------C-------------------GCTCG---TTTA---CGGGT--------------------------------------------------------------TCAT-------------------------CGCT--GCTGCC--AAC-----GTG----------TT--TCG---AA-----C--CAC----C-GGCAGC--A-AGCG-----------------------ATGT-----GGGTGCG--CAAGTGGACGT-AAAGGCGAGACTGAGGGTGATCCATTTTTGTTGG----------------------------------------------------------------------------------------------ACGCGACTGACACACTC--------------------CAGTTGCTTCCATCACCTGCCACTATCAAACCATACTATTTCAACATTGTCGCATCAACTGCATTCTGTAGCATCAACTGCATTCCGTAGCATCAACTGCATAGCATACACACATATCATCGCATGCACAATTCACCTTGTCCCTCTATGGTTGTCTACGAGTTGAAGATCCTCGAGTGTTGCAGGTCGTGCCGCCCAGCCAGAATCTCACCCAATGGCCAAGTCGTGGCTGGGCCGCGCTCTGCTTCGTCGGCCCACTCCCAAAAAGGAT
#=GS TriPor/1-888 DE BCJG01000004.1:c594644-593710 Trichosporon porosum DNA, scaffold: scaffold_3, strain: JCM 1458, whole genome shotgun sequence
TriPor/1-888                           ----------------------------------------------GACCCGCGGCGCGACCATCCTGTACGCGACCCACATCTTTGACGGCCTCGGCGAGTTCCCCAACAAGATCTGCCACATCCAACTCGGCAAGACTCCCCGTGCCCTTGTCCACTGGAAGCCGAACCAGGCCGACCTCTTCAAGGTGGCCCTCGAGTGGCTCCGCGAGGACCGCATTCTCCGTCGCGAGAAGGAGGAGGCCAAGGGCCGCATGCGCGGTCCCAAGACTGACGTGAGTGCAGATGTAAAACGTTCGTGGCACCTATCTGACCATACAGTCCTCGTACAAGGACGCCCAGACGTTCTTTGAGAAGTACGACTACTCGCACTAAACCAACACCACCAAAAAAACACCTGTACATGTAAGTGGCGCTCCCCCACCACTCCCACCCACCCGATGATGAACGATAT-TGGTAATCCGCATA------CGC-ACCC------CG-------------------GCTCC---TAT----GGAGT----------------------------------------------------------------AT------TGGC----------CG----GCG---CGTTC--AAC---------------GAGGC--TAT---GCCTC-----------TGCGAGCG---A-CGC--AT--CG------TT-GCCA----GC------GGGTGCG--GAAGGGGATGA-AAAGGCGAGACTGAGGGAACCCCCGCAAACGAACGGTCGTGTCTGGCATGATCAGACCTACCAGTACCTCTCAACG-------------------------------------------------ACACTGGCGCTGACGACACGATC-----------------CAGTCTGTGATACTTTCCAAGACAATAGACCCTGTTGCTATCCTACCAACCCTAGACACCAATACCGCCTGTTGTCGCATCAACTGCATTCCGGACTCGGCTGCCAATCGCCTCTAAAACACACCAGAGACGACTTGGGCCAGCATCAACTGCATTGAACCCACCCAACCCATTTCTAGCACGGCATAAAACCACCAACACCTTCAACTGTCAGCCGTATAAGGCATCAACTGCATCGTTATCTCCTCCCCATGCATCCTCCATAAACCCA
#=GS TriOvo/1-721 DE JAMFRG010000009.1:1031800-1032570 Trichosporon ovoides strain Y9002B ctg_9, whole genome shotgun sequence
TriOvo/1-721                           -----------------------CCCTATACTGAAATGGACCCCCGGGCAACAGGACCTCTTCCAACTTGCTCTTGGCTGGTTGCGTGAAGACCGCGAAGTCCGTCGTAAGCATGAGGCCGACCGCGGAAGAATCCGTGGCCCGAAGACCAATTCGGACACCAGGGATGCTACCAAGTTCTTCGAGAAGTATGATTATGGACGAGGCAAGTAACGCAACTCTTGCCTTAGTCCAGCTGCCGTCGTGACCCTGGCCATCCAGCAGTCCATCAACCCGTGAGTA--------------------------------------------------------------------------------------------------------------------------------------------CGATGGAGCTTCAACCCTGTGATGAAAGA--TCTGGTAATCCGTCTA------CAC-ACCCCA---------------------------CTC---TCAG---GAG----------------------------------------------------------------ATATCAG------------------------TC--ATTTGC---------------------CATG-CTTAGC-CATG-------------A-GCAAAT----GA-------------------------AGCGA--TGGGGTGCG--AATGGTGATGT-TAAGGCGAGTCTGAGGGTTTGAACGCGGCTGTCGATGGAAGGGACG---------------------------------------------------------------------------------TTCGTAGCTGACTAAATT--------------------CAGACATTGTAATATATCTCTCACTGTTGACTCTAGACATAACCTGCATTGCATTCAACCGCAAGTACTCATAACACTGCTCTGTCCTGTAAAAGCGTCAAGAAAAGACATCGTATCATGCATCTCCTCATCTCTCGGTCGCCCACAGTTCGTCGGACCGTCTAGAGTGGAGGTCTGAGGGAAAGGTATTTACAGCAGCAACGCGTCTCAGGGGTGATGCGGGGTCCCCACGATCTAGAGCGCAGCTGTTGCTGCTTGCGAAGTGCTGCCA
#=GS CrySki/1-168 DE BCHT01000010.1:c578552-578385 Cryptococcus skinneri DNA, scaffold: scaffold_9, strain: JCM 9039, whole genome shotgun sequence
CrySki/1-168                           -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTCAACGGCCCGATGATGATAAC--ACTGGTAATCCGTATA------CAC-ACCC-------A-------------------CGTCT---TTT----GGACG-------------------------AATGCGAG-----------------------------ATAC--------------------------TCGTCCGTTGG--TCC--TCCTTC--------ACCT--ATT---GGGT---C--GAAGGA-TCCCGACGG-T-CGG-----------------------TCACCA----GGGTGTG--GAAGGGGTCTC-TAAGGCGAGACTGAGGGTTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GC  SS                               ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------((((-------------------------------------((-(((((((.....(((..(((((((((((.(((((((..........)))))))......)))))))))))...))).........(((((...........)))))................-(((..(((((((((((.(((((.(((((((......((((((((....((((((((......))))))))..)))))))...)))))))...)))))...)))))))))...)))).........)))))))))))----------------------------))))----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
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