snR47-SNORD36C¶
snR47, SNORD36C processed-boxCDsnoRNA-116nt-as-CNAG_12265
Within transcript containing RNAse MRP (Rfam URS00006979AF_214684)
.. C. neoformans
>AE017343.1:c1289367-1289252 Cryptococcus neoformans var. neoformans JEC21 chromosome 3 sequence ACCCAGTGATGTTGTTTGAATTTCTTCATCGCTAGCTCGAGAAGTCTGACCGCCTGACATCGGTTATACA AGGACTTTTCGAAGCACGGAGCGACAGTATATTCTTCTGAGGGTCT
Image source:
# STOCKHOLM 1.0
#=GF RW van Nues, May 2023
#=GF https://coalispr.codeberg.page/paper
Annot/1-40 -----RTGATGA---------------------ACUUAAAGAAGUgCTGA-------------------------------------ACUGU--------------------------------------------------RTGATGA--------------------------CTGA-------
#=GS snR47-SNORD36C/1-116 DE processed-boxCDsnoRNA-116nt-as-CNAG_12265 ncrna 3:1289251:1289367:-1
snR47-SNORD36C/1-116 ACCCAGTGATGTTGT-----------------TTGAATTTCTTCATCGCTAGCT---CGAGA-----AGT--------CTGACCGCCTGACAT-----CGGTTAT------ACAAGGACT----TTTCG---A-AGCACGGAGCGACAG--------------TATATTCTT---CTGAGGGTCT-
#=GS CNAG_12265/1-115 DE XR_001045593.1:798-912 Cryptococcus neoformans var. grubii H99 hypothetical RNA (CNAG_12265), ncRNA
CNAG_12265/1-115 ACCCAGTGATGTTG------------------TTGAATTTCTTCATCGCTAGCT---CGAGA-----AGT--------CTGACCGCCTGACAT-----CGGTTAT------ACAAGGACT----TCTCG---A-AGCACGGAGCGACAA--------------TTTATTCTT---CTGAGGGTCT-
#=GS H99/1-115 DE CP003822.1:730598-730712 Cryptococcus neoformans var. grubii H99 chromosome 3, complete sequence
H99/1-115 ACCCAGTGATGTTG------------------TTGAATTTCTTCATCGCTAGCT---CGAGA-----AGT--------CTGACCGCCTGACAT-----CGGTTAT------ACAAGGACT----TCTCG---A-AGCACGGAGCGACAA--------------TTTATTCTT---CTGAGGGTCT-
#=GS WM276/1-115 DE CP000288.1:c1256650-1256536 Cryptococcus gattii WM276 chromosome C, complete sequence
WM276/1-115 ACCCAGTGATGTTG------------------TTGAATTTCTTCAGCGCTAGCT---CGAGA-----AGT--------CTGACCGCCTGACAT-----CGGTTAT------ACAAGGACT----TCTCG---A-AGCATGGAGCGATAA--------------TTTATTCTT---CTGAGGGTCT-
#=GS R265/1-115 DE CP025759.1:c1497443-1497329 Cryptococcus gattii VGII R265 chromosome 1, complete sequence
R265/1-115 ACCCAGTGATGTTG------------------TTGAATTTCTTCAGCGCTAGCT---TGAGA-----AGT--------CTGGCCGCCTGACAT-----CGGTTAT------ACAAGGACT----TCTCG---A-AGCATGGAGCGATAA--------------TTTATTCTT---CTGAGGGTCT-
#=GS CryWin/5-120 DE AWGH01000002.1:454370-454489 Cryptococcus wingfieldii CBS 7118 supercont1.2, whole genome shotgun sequence
CryWin/5-120 GCCCGGTGATGTTT------------------TTGAATTTCTTCATCGCTAGCT---CGAG--AA---GT--------CTGACCGCCTGACAT-----CGGTTAT------ACAAGGAC--GA--CTCG---T-GGCTTGGAGCGAAAAC-------------ATAATTCTT---CTGAGGGTTT-
#=GS KwoHev/1-120 DE ASQC01000175.1:34479-34598 Kwoniella heveanensis CBS 569 cont2.175, whole genome shotgun sequence
KwoHev/1-120 ACCCTGTGATGTTG------------------TTGAATTTCTTCATCGCTAGCTC--GGAT---C--TGC--------CTGACCGCCTGACAT-----CGGTCAT-------GAAGGGCG-----ATCT--AA-AGTCGGGAGCGAGAAC---------ATACACA-CTATT---CTGAGGGTTCC
#=GS KwoPin/1-117 DE ASCL01000005.1:1198162-1198278 Kwoniella pini CBS 10737 cont1.5, whole genome shotgun sequence
KwoPin/1-117 ACCCTATGATGCTT------------------TTGAATTTCTTCATCGCTAGC-TC--GAA---T--TAC--------CTGACCGCCTGACAT-----CGGTCAT-------AAAGGGTA------TTC--AAT-GCCAGGAGCGATATC-----------ATACAATTATAT-GCTGAGGGTT--
#=GS KwoMan/1-118 DE ASQE01000061.1:c114387-114270 Kwoniella mangroviensis CBS 8507 cont2.60, whole genome shotgun sequence
KwoMan/1-118 ACCCAATGATGCTA------------------TTGAATTTCTTCATCGCTAGC-TT--GA---TT--TAC--------CTGACCGCCTGACAT-----CGGTCATC-----TAAAGGGTA-T----TC--CAAC-GCAGGGAGCGATATC------------TAAAATTACT--GCTGAGGGTT--
#=GS KwoShan/10-125 DE NQVO01000013.1:180805-180929 Kwoniella shandongensis strain CBS 12478 scaffold00013, whole genome shotgun sequence
KwoShan/10-125 ACCCCATGATGCCAA------------------CGAATTTCTTCATCGCTAGC-C--CGAG------CGT--------CTGGCCGCCTGACAT-----CGGCCATT------AAAGGACG-A---CTCG--AA--GCGGGGAGCGATATC----------TACACGATT----GACTGAGGGTT--
#=GS KwoBes/1-116 DE ASCK01000008.1:c279225-279110 Kwoniella bestiolae CBS 10118 cont1.8, whole genome shotgun sequence
KwoBes/1-116 ACCCTATGATGCTA------------------TTGAATTTCTTCATCGCTAGC----TTGG--TTT--AC--------CTGACCGCCTGACAT-----CGGTCAT-------CAAGGGTA-TT--CCAA---C--GCAGGGAGCGATATC-----------ATAAA-TTACT--GCTGAGGGTT--
#=GS KwoDej/1-116 DE ASCJ01000004.1:1290377-1290492 Kwoniella dejecticola CBS 10117 cont1.4, whole genome shotgun sequence
KwoDej/1-116 ACCCCATGATGCTA------------------TTGAATTTCTTCATCGCTAGC----TTGG--ATC--AC--------CTGACCGCCTGACAT-----CGGTCAT-------CAAGGGT--AT--CCAG---C--GCCAGGAGCGAGATC-----------ATAGA-CTACTT-GCTGAGGGTT--
#=GS TreFuc/1-113 DE BRDD01000039.1:166331-166443 Tremella fuciformis NBRC 9317 DNA, KCNB80TF.39, whole genome shotgun sequence
TreFuc/1-113 ACCCGGTGATGTC-------------------TTGAATTTCTTCAACGCTAGC---TCGGG-----ACGA------TAC--GCC-CCTGACAA------GGC----TA----AACGGTCGT----CCCGA--T--GCACGGAGCGAGAA-----------AAACCTCGTACCTT-CTGAGGGT---
#=GS TreYok/1-113 DE BRDC01000025.1:c708270-708158 Tremella yokohamensis NBRC 100148 DNA, KCNB35TY.25, whole genome shotgun sequence
TreYok/1-113 ACCCGGTGATGTC-------------------TTGAATTTCTTCAACGCTAGC---TCGGG-----ACGA------TAC--GCC-CCTGACAA------GGC----TA----ACCGGTCGT----CCCGG--T--GCACGGAGCGAGAA-----------AAACCTCTTTTCT--CTGAGGGTG--
#=GS KocImp/1-118 DE NBSH01000014.1:401308-401425 Kockovaella imperatae strain NRRL Y-17943 BD324scaffold_14, whole genome shotgun sequence
KocImp/1-118 ACCCAGTGATGCCTT-----------------TTGAATTTCTTCAACGCTAGCG--GGGAGAG-T---GT-GA--------TCCGATGGACCTTTAG-TGGG--AA-----CAGAGGAC---CCTCTCTC--T-CGTGGGGAGCGACATC----------------TTGAC---GCTGAGGGT---
#=GS NaeEnc/6-110 DE MCFC01000036.1:c110439-110330 Naematelia encephala strain 68-887.2 BCR39scaffold_36, whole genome shotgun sequence
NaeEnc/6-110 GCCCAATGATGC--------------------TTGAATTTCTTCAGCGCTAGC-C----CGA----GATGTCAGGT---CGT-----CGACA---------GCG----ACTGCGTATCATC---TCG----AA--GCAGGGAGCGACCATC----------------TTTC---GCTGAGGGT---
#=GS TakKor/1-114 DE BCKT01000013.1:731622-731735 Takashimella koratensis DNA, scaffold: scaffold_12, strain: JCM 12878, whole genome shotgun sequence
TakKor/1-114 ACCCAATGATGGT-------------------TTGAATTTCTTCAGCGCCAGC-----GCGA----GACGCCAGGTCCTCGG----GTGACA---------CCA--GGGCTGCTTATCGTT---TCGT----A--GCGAGGGGCGACAAAC--------------AATATC---ACTGAGGGT---
#=GS TriAsa/1-114 DE AMBO01000379.1:84643-84756 Trichosporon asahii var. asahii CBS 8904 contig0380, whole genome shotgun sequence
TriAsa/1-114 ACCCAATGATGGT-------------------TTGAATTTCTTCAGCGCTAGCC----CAGC-A---CCGCCAGGCGC-CGG----GTGACA---------CCG-TGTGCTGCATATCGG--A-GCTG------GGCGTGGAGCGACAGA------------------TTGACA-CTGAGGGTA--
#=GS PapLau/6-116 DE JDSR01000449.1:22145-22260 Papiliotrema laurentii RY1 contig_466, whole genome shotgun sequence
PapLau/6-116 ACCCTATGATGC--------------------TTGAATTTCTTCAGCGCTAGC-----CCGA----GATGCCAGGT---CGTTA--CTGACA-------TGATG----GCTGTCTATCATC---TCGG----T--GCGGGGAGCGACATTA------------------TGACCGCTGAGGGT---
SacCer-snR47/1-99 -ATATATGATGATATCCTATAACAACAACAACATGAATTTCTTCGTCCGAAT----------------------------------CCTTT-----------------------------------------------ATAGGTGGAAACAAACTTTGACAATAGCTTTTTAACACTGATA-----
#=GS HomSap-SNORD36C/2-68 DE Homo_sapiens SNORD36C
HomSap-SNORD36C/2-68 TGCCAATGATGGTTAA------------------GAATTTCTTCACCTGAAT-----------------------------------AAA------------------------------------------------CCATGTGGTCAGCAT-----------------TGCATCTGAGGCAAA-
#=GC SS_cons [[[[---<<<<-----------------------------------((((.(((..(((((((...((((...(((((-((((((............))))))---)))))......))))..)))))))....)))----))))------------------------------>>>>]]]]---
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