H/ACA snoRNAs

The table below gives an overview of core regions of putative H/ACA snoRNAs in Cryptococcus and related Tremellomycetes. The snoRNAs were identified by phylogenetic comparison based on small RNA-seq data for H99 [Dumesic-2013, Burke-2019] and JEC21 [GSE178393] and RNA-Seq libraries [Wallace-2020]. Sequence coordinates were from [Wallace-2020] [1]. Expression starts-stops have been guiding, while an aca motif would be expected near the 3’ terminus. Many snoRNAs appeared to be derived from longer precursors, assuming that deviating sequences were indicative for precursor-regions.

The H/ACA snoRNAs were named after the gene they originated from (ncRNA-gene annotations are available for C. neoformans H99).

A complication in identifying proper snoRNAs are introns separating conserved sections which could have been missed during the Blast search or subsequent alignment, especially when the introns are not conserved (for example see HACAcnag00544, HACAcnag12714, or HACAup-cnag06094).

Some snoRNAs are poorly conserved among Tremellomycetes, like the duplicated HACAcnag01565 in Cryptococcus that is mostly found once in other organisms or HACAcnag12677-1 and HACAcnag12764. In these snoRNAs only one terminus (either their 5’ or 3’ end) is structurally well-defined [2]. Would this be indicative for guiding a single modification?

All the listed snoRNAs need experimental validation, e.g. by co-purification with H/ACA RNP proteins (homologues of yeast NHP2 (CNAG_02378, CNE01710), Nop10 (CNAG_01049, CND01790), GAR1 (CNAG_04259, CNI03970) or CBF5 (CNAG_01168, CND02940)).

Although only sequences conserved among Tremellomycetes have been considered, human, yeast or plant orthologues could not be identified, nor putative pseudouridylation sites. Secondary structures, as predicted for yeast snoRNAs, were not obvious, maybe because of incomplete sequences or non-canonical base-pairing.

Genome coordinates in the tables below refer to C. deneoformans JEC21 and are also in jec21-ncRNA.gtf. Coordinates for snoRNAs of C. neoformans H99 are in h99-ncRNAxtra.gtf.

Tables

Chromosomes

1 & 2

No. [3]	Location [4]	Name	JEC21 [5]	H99	genetic context [5]	Alignment [6]	Host gene description
Chromosome 1
1.1	1:775364-775646:-1	HACAcnag12044 (also HACAcnag12044b)	from-CNA02895	from-CNAG_12044			Uncharacterized protein (JEC21)
1.2	1:1388993-1389156:-1	HACAcnag00544	intergenic, upstream CNA05280	in-CNAG_00544			Uncharacterized
1.3	1:1709904-1710070:1	HACAcnag00650	intergenic, upstream CNA06300	in, or upstream CNAG_00650			GRAM domain-containing protein (H99)
1.4	1:1910815-1911099:1	HACAcnag12094	intergenic	intergenic
Chromosome 2
2.1	2:83055-83280:1	HACAcnag06770 (as HACAcnag12895)	intron-CNB00300	intron-CNAG_06770			Fructose-bisphosphate aldolase
2.2 2.3	2:1157356-1157525:-1 2:1157076:1157245:-1	HACAcnag03904-1 HACAcnag03904-2	intron-CNB03930	intron-CNAG_03904			26S protease regulatory subunit 6B
2.4	2:1547686:1547863:-1	HACAcnag04068	intron-CNB00300	intron-CNAG_06770			Large subunit ribosomal protein L28e

3 & 4

No.	Location	Name	JEC21	H99	genetic context	Alignment	Host gene description
Chromosome 3
3.1	3:140544-140742:1	HACAcnag12223	in T1 transposon (AY145840)	from-CNAG_12223
3.2	3:227719-227935:1 3:228108-228331:1	HACAcnag01565-1 HACAcnag01565-2 (duplicates) [2]	downstream-CNC00800 intergenic	from-CNAG_01565 or intergenic		[2]	Biotin-[acetyl-CoA-carboxylase]_ligase
3.3	3:525355:525598:1	HACAcnag12987	intergenic	from-CNAG_12987
3.4	3:986696:986873:-1	HACAcnag13008	intergenic	from-CNAG_13008
3.5	3:1284233-1284524:1	HACAcnag12266	intergenic	from-CNAG_12266
3.6	3:1451249-1450484:-1 3:1450816-1451249:-1 3:1450677-1450763:-1 3:1450450-1450621:-1	pre-HACAcnag12250 [7] HACAcnag12250-exon1 HACAcnag12250-exon2 HACAcnag12250-exon3	intergenic	from-CNAG_12250		[7]
Chromosome 4
4.1	4:1361148-1361377:1	HACAcnag12434	intergenic	from-CNAG_12434
4.2	4:1522260-1522532:-1	HACAcnag07413	intron-CND05640	intron-CNAG_07413			NOG2

5 & 6

No.	Location	Name	JEC21	H99	genetic context	Alignment	Host gene description
Chromosome 5
5.1	5:140544-140742:1	HACAcnag12523	intergenic	from-CNAG_12523
Chromosome 6
6.1	6:33103:33121:1 6:33182:33358:1	HACAcnag12714 (exon1) HACAcnag12714 (exon2)	intergenic	from-CNAG_12714
6.2	6:271007:271218:-1	HACAcnag12692	intergenic	from-CNAG_12692
6.3	6:436788:436955:1	HACAcnag12684	from exon-CNF01490 (with box C/D snR72 in intron)	from-CNAG_12684
6.4	6:592176-592317:-1	HACAcnag12677-1 [2]	intergenic	from-CNAG_12677		[2]
6.5	6:591774-591945:-1	HACAcnag12677-2 [8]				[8]
6.6	6:777516-777689:1	HACAcnag12667-1 [8]	intergenic	from-CNAG_12667		[8]
6.7	6:777884-778051:1	HACAcnag12667-2
6.8	6:1123662-1123475:-1	HACAcnag12640	intergenic	from-CNAG_12640

7 & 8

No.	Location	Name	JEC21	H99	genetic context	Alignment	Host gene description
Chromosome 7
7.1	7:231865:232080:1	HACAcnag03509 [8]	intergenic upstream-CNG00840	intergenic or from-CNAG_03509		[8]	Pyruvate dehydrogenase X component
7.2	7:231865:232080:1	HACAcnag12764 [2]	intergenic	from-CNAG_12764		[2]
Chromosome 8
8.1	8:304130:304457:-1	HACAcnag05651-1	on exon of intergenic transcript with box C/D snoRNA snR51-snR79 on intron	from-CNAG_05651
8.2	8:303617:303767:-1	HACAcnag05651-2
8.3	8:356701-357094:-1 8:357078-357094:-1 8:356789-357020:-1	pre-HACAcnag13196 HACAcnag13196-exon1 HACAcnag13196-exon2	intergenic	from-CNAG_12250
8.4	8:857025-857180:1	HACAcnag12044b (as HACAcnag12044)	intergenic	no duplicate	no duplicate

9 - 14

No.	Location	Name	JEC21	H99	genetic context	Alignment	Host gene description
Chromosome 9
9.1	9:598671-598825:1	HACAcnag04334	from-3’UTR CNI02150	from-3’UTR CNAG_04334			Ribosomal protein S14 (40S) or S11 (mitochondrial 30S)
Chromosome 10
10.1	10:426811-426989:1	HACAcnag12924	intergenic	from-CNAG_12924
10.2	10:735188-735418:1	HACAcnag12895 (as HACAcnag06770)	intergenic	from-CNAG_12925
10.3	10:765212-765380:-1	HACAcnag12894	intergenic	from-CNAG_12894
Chromosome 11
11.1	11:852866-853032:1	HACAcnag01951	intron-CNK02900	intron-CNAG_01951
Chromosome 12
Chromosome 13
13.1	13:305901:306103:-1	HACAup-cnag06094 [9]	intergenic	intergenic [9] upstream CNAG_06094
Chromosome 14

Notes

[1]

The reference files were obtained as described in the script wget_resources.sh that comes with the source code (in coalispr/resources/share/bash_scripts/).

[2] (1,2,3,4,5,6,7)

Only one terminus, either the 5’ end or 3’ end, is conserved and forms a stemloop. By lack of expression data for orthologous sequences, the only reliable alignments are those for species closely related to C. (de)neoformans. The alignments for the other terminus, say the aca near the 3’ end in H/ACA snoRNAs with a conserved 5’ end, are speculative for any of the other, putative orthologs.

[3]

Numbers of entries link to alignments in Stockholm format.

[4]

The provided genomic coordinates were used for searching homologs and might contain flanking sequences.

[5] (1,2)

These columns describe the genomic context of the snoRNA; for C. neoformans H99 a diagram is presented (click on the thumb-nail for an enlargment).

[6]

Alignment of retrieved Tremellomycetes` sequences (click on the thumb-nail for an enlargment).

[7] (1,2)

Only the middle section is fairly conserved and shown in the alignment image. Unlike other snoRNAs and by lack of expression data for orthologous sequences that would help to unambiguously define introns, only alignments for species closely related to C. (de)neoformans are valid. No clear aca near the 3’ end in all cases (see 3.5 source); possibly not a H/ACA snoRNA?

[8] (1,2,3,4,5,6)

Not conserved, restricted to Cryptococcus species closely related to C. (de)neoformans; no orthologs found in more distant Tremellomycetes.

[9] (1,2)

Transcript not annotated in H99 (no CNAG number).

---

• Image source 1.1, 8.4:

# STOCKHOLM 1.0
#=GF RW van Nues, September 2023
#=GF https://coalispr.codeberg.page/paper
#=GS HACAcnag12044/1-226 DE 5UTR-CNA02895 AE017341.1:c761393-761168 Cryptococcus neoformans var. neoformans JEC21 chromosome 1, complete sequence
HACAcnag12044/1-226                ---------------------------------------------------------CACATGCAATA----CCAGTCCCACACACGAAGCTGCTTTTCGATCTAAACAGAGCAAAATCTAC---ACGGG-ACATCAT--TGCTATATACT--CGTCCTAGTTTGAGGGTTGGTGATGGGTTC-TTACATTGCCTTCCCATAGAACGG--ACAGACATACCAAA----CCCCCACTTTTTATTGTGACGATTTGCTACGGGACCGACGGC-----------------------------TCAATCTGACAACGACAGTAGCA-TGGAGAACT--------------------------------------
#=GS haca-from-CNAG_12044/1-221 DE CP003820.1:c787237-787017 Cryptococcus neoformans var. grubii H99 chromosome 1, complete sequence
haca-from-CNAG_12044/1-221         ---------------------------------------------------------CACATGCAATA----CCAGTCCCACATACGAAACTGCTTTTCGATCTAAACAAAGCATGATCTAC---ACGGGAAACCATT--TGCTATATACT--CGTCCTAGTTTGAGGGTTGTCGATGGGTCC-TTACATCGCCCTCCCATAGAACGG--ACAGACATATCATTT----CCCCA------TTTTTTATTGTGACGATTTGTTACCAATGG-----------------------------TCAATCTGACGACGACAATAGCTT-GAAGACCT--------------------------------------
#=GS R265/1-223 DE CP025762.1:c741620-741398 Cryptococcus gattii VGII R265 chromosome 4
R265/1-223                         ---------------------------------------------------------CACATGCAATA----CCAGTCCCACATATATAATTGCTTTTCGGTCTACAAGAAAGCATAATCCA---CGAGGGACATAAT--TGCTATATACT--CGTCCTAGTTTGAGGGTTGTCGATGGGTTC-TTACATCGCCCTCCCATAGAACGG--ACAGACATACCAGCGC--AATCCC---TCACTTTTCACTGTGACGGTTTACCATCAA--------------------------------TCGATCTGACGACGACAGCGACAT-GAAGACCT--------------------------------------
#=GS WM276/1-222 DE CP000287.1:c753455-753234 Cryptococcus gattii WM276 chromosome B, complete sequence
WM276/1-222                        ---------------------------------------------------------CACATGCAATA----CCAGTCCCACATATATAATTGCTTTCCGGTCTACAAGAAAGCATAATCCA---CAG-GGACATTAT--TGCTATATACT--CGTCCTAGTTTGAGGGTTGTCGATGGGTTA-TTACATCGCCTTCCCATAGAACGG--ACAGACATCATACCAATCCGTCCC---TCACTTTTTGTTGTGACGGTTTGCCATTAA--------------------------------TCGATTTAACGACGACAGCGACAT-GAAGAC----------------------------------------
#=GS HACAcnag12044-b/1-232 DE AE017348.1:857026-857257 Cryptococcus neoformans var. neoformans JEC21 chromosome 8 sequence
HACAcnag12044-b/1-232              ---------------------------------------------------------CACATGCAATACTCGCTAGTCTCGCATACACAATTGCTTTTCGACCTACCACAGAGCATGATCTA---CAAAGGACATCAT--TGCTATATACT--CGTCCTAGTTTGAGGGTTGTCGATGGGCTC-TTACATCGCCCTCCCATAGAATGG--ACAGACATACCTA----------------TTTTTTCACTGTGAACCTC----------------------------------------------ATGACGACGAC-GCACTT-AGAAGACCTGGCTTCCTCTATCCTATGTACCCAGATTTTA-------
#=GS R265-b/1-223 DE CP025768.1:c267151-266929 Cryptococcus gattii VGII R265 chromosome 10, complete sequence
R265-b/1-223                       ------------------------------------------------------------GTGCAATGCCCGCCAGTCCCGCATACATAA-TGCCTTCCGATCTACAACAGAGCATGATTCA---CAGGGGACACCAT--TGCTATATGCG--CATCCTAGTTTGAGGATCGTCGATGGGCTTG-TACATCGCCCTCCCATAGAGCGG---ACGACATACCATC---GCATCCCCGGT----CTCAGCTGTGACAGTGTCGCCATTAGCTAAAT------------------------------CTGATGACGACCGTAACTTGGAAGACCT--------------------------------------
#=GS WM276-b/1-230 DE CP000297.1:c252828-252599 Cryptococcus gattii WM276 chromosome L, complete sequence
WM276-b/1-230                      ------------------------------------------------------------AATTTATGCCCGCCAGTTCCGCATACATAA-TGCTTTCCAACCTACAACAGAGCATGATTCA---CAGGGGACACCAT--TGCTATATGCG--CGTCCTAGTTTGAGGGTTGTCGATGGGCTC-TTACATCGCCATCCCACAGAGCGGCGGACGACATACCATCGCATCCTCGGT---ACTCATCACCTGTGACAGTGTTGCCATTGGCTAGAT------------------------------CTGATGAAGACAGTAACTTGGAAGACCT--------------------------------------
#=GS CryVH5/1-288 DE JANBXI010000007.1:278087-278374 Cryptococcus sp. VH57_BW 7, whole genome shotgun sequence
CryVH5/1-288                       ---------------------------------------------------------ATTCTGCAGCTACCGGTCCCACCTACGCACGA-TTGCTCCTCGATCTTGGACAGAGCACCATCACCGCTAGGGGCCATCAGTATGCTAGATAGACTTGTCCCAGTTTGAGGGTCGCCGGTGGGTTTCTTACGCCGGCCTCCCATAGAGCGG--ACAGACATCTTTTGACGGCG-----------------CTGTGCGTTCTTTCTATCCTCTACGCTTCAC----CTTGTGGTGGCGCTTGGTATGCTATCTGTGTGTTGTGTACTGGCAGATCT-CGAATGGCGATTGCGGGAGCGACTTGAACCACCGCAC
#=GS CryFlo/1-246 DE RRZH01000013.1:c863321-863076 Cryptococcus floricola strain DSM 27421 chromosome 12, whole genome shotgun sequence
CryFlo/1-246                       -----------------------------------------------------TCTCCATATGCAAAAAA-CCATGCCCTGCAAATCAAGTCGCTCTTTCATTCGCCACAGAGCCTCTCATTGTTCAGGGAATGTT----TGCTATAGTGAA-TGTCCAAGTTTGAGGGTCGCCGGTGGGCTT-TTACACCGACCTCCCATAGAGCGG--ACGTACATCCACCCAAAAACCCCACTC------------GTGTGCGTTTTCTCTCAGCTTT---------------------------------CCGAGGCTGCTGCGATCTATGAAGACCTTTGTCAGATGCCTTACCTTAC-----------------
#=GS CryWin/1-256 DE AWGH01000015.1:c299628-299373 Cryptococcus wingfieldii CBS 7118 supercont1.15, whole genome shotgun sequence
CryWin/1-256                       -----------------------------------------------------TCTCCATATGCAAGAAA-CCATGCCCTGCAAATCAAGTTGCTCTTTCATTCGCCACAGAGCCTCTCACTGTTCAGGGAATGTT----TGCTATAGTGAA-TGTCCAAGTTTGAGGGTCGCCGGTGGGCTT-TTACACCGACCTCCCATAGAGCGG--ACGTACATCCACCCAAAAACCCCACTC------------GTGTGCGTTTTCTCTCAGCTTT---------------------------------CCGAGGCTGCTGCGATCTATGAAGACCTTTGTCAGATGCCTTACCTCGCAGCACCATTC-------
#=GS CryAmy/1-256 DE MEKH01000003.1:353838-354093 Cryptococcus amylolentus CBS 6273 supercont2.3, whole genome shotgun sequence
CryAmy/1-256                       -----------------------------------------------------TCTCCATATGCAAAAA-CCCATGCCCTGCAAATCAAGTCGCTCTTTCATCCGCCACAGAGCCTCTCACTGTTCAGGGAATGTT----TGCTATAGTGAA-TGTCCAAGTTTGAGGGTCGCCGGTGGGCTT-TTACGCCGACCTCCCATAGAGCGG--ACGTACATCCATCCAAAAATCCCACTC------------GTGTGTGTTTTTACTCAGCTTT---------------------------------CCGAGGCTGCTGCGATCTATGAAGACCTTTGTCAGATGCCTTACCTCGCAGTACCATTC-------
#=GS CrySki/1-184 DE BCHT01000002.1:c229523-229340 Cryptococcus skinneri DNA, scaffold: scaffold_1, strain: JCM 9039, whole genome shotgun sequence
CrySki/1-184                       ----------------ATGTCTCCTCATTCGCAGCAGCCCCCACTCAATCTCAGATTCAGTAAACTATCCCCTCAGC-TTGTGCATGCCACGGCAGA--CACCCCGAGAGGAG--ATACAA----CCGGGGC--------TGCGAGAGAGGT-AGTCCTCGTTTGAGGGTTGCCGACGTGTAG-TCCCGTCGGTTTCTCATAGTTTGG--ACAGACATTTT-----------------------------------------------------------------------------------------------------------------------------------------------------
#=GS TreYok/1-291 DE BRDC01000043.1:929476-929766 Tremella yokohamensis NBRC 100148 DNA, KCNB35TY.43, whole genome shotgun sequence
TreYok/1-291                       ------------------------------ATTGTTGAAAAGCGCTGCGAGGCTGGTTGAAGATTTCTCGTCCCGACTTCTCTTCAGCTTCTGCGCTTTTTGCTATATCATCAGCATACAA--GCTCCTACGAGTCGTCGGAGAAGGTTCG--AGTCCCAGTTTGAGGGTCGCCGAGTGGTCTACGGCCTCGGTCTCCCATAGTA-GAGGACGGACATGAGAGCATATCAAGAGTCGGGGATGGGCATGGGGAGCCGGGCTTGCGGGCTCCTCAAAGTGGAATGCACAA--------------GATGAGATCGATGGGAGACCCTGCAGAACTTGGCTGG------------------------------
#=GS TreFuc/1-318 DE BRDD01000111.1:20952-21269 Tremella fuciformis NBRC 9317 DNA, KCNB80TF.111, whole genome shotgun sequence
TreFuc/1-318                       TTTGCCACACTCGCCTGGTCTTGTCGCCCGTTGATTGAAAAGCGTTGCGAGGCTGGTTGAAGATTTCTCGTCCCGACTTCTCTTCAGCTTCTGCGCTTTTTGCTATATCATCAGCATACAA--GCTCCTACGAGTCGTCGGAGAAGGTTCG--AGTCCCAGTTTGAGGGTCGCCGAGTGGTCTACGGCCTCGGTCTCCCATAGA-AGAGGACGGACATGAGATCATATCAAGAGCCGGGCATGGGCATGGGGAGCCGGGCTTGCGGGCTCCTCAAAGTGGAATGCACAA--------------GATGAGATCCATCGAGGACCCTGCAGATCTTGGC---------------------------------
//

• Image source 1.2:

# STOCKHOLM 1.0
#=GF RW van Nues, September 2023
#=GF https://coalispr.codeberg.page/paper
#=GS JEC21/1-163 DE AE017341.1:c1396573-1396411 Cryptococcus neoformans var. neoformans JEC21 chromosome 1, complete sequence
JEC21/1-163                     -------------------------------------------------------------------------------------------------------------------------------------------------ACAGTGA-------CTGCAC--TTCGTTAAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGGAACT--ACACTTCCCTCGCGAGG------TTGTTCCCTTCAAATA-GTGCACAGAAAAAA-TAA----TC------------------------CGCTTGGTTT-CGTTAGCTGCTGGCAC-GTCC-------------------------------------GGAAGGA-CATTCAT-ATAGCCAGTT--TCTTGATAGTAGCCTTGCGACATTACG------
#=GS H99/1-162 DE CNAG_00544 CP003820.1:c1389155-1388994 Cryptococcus neoformans var. grubii H99 chromosome 1, complete sequence
H99/1-162                       -------------------------------------------------------------------------------------------------------------------------------------------------ACAGTGA-------CTGCAC--TTCGTTAAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGGAATT--ACACTTCTCTCGCGAGG------TTATTCCCTTCAAATA-GTGCACAGAGAAAAACAA----TC------------------------CGCTTGGTTT-CGTTAGCTGCTGGCAC-GTCC-------------------------------------GGAAGGA-CATTCAT-ATAGCCAGTT--TCTTGATAGTAGCCTTGCGACATTA--------
#=GS 5'exon-CNAG_00544/1-163 DE 1: [1,388,993 - 1,389,156]:-1 (+163) ER transporter 6TM N-terminal domain-containing protein
5'exon-CNAG_00544/1-163         -----------------------------------------------------------------------------------------------------------------------------------------------T-ACAGTGA-------CTGCAC--TTCGTTAAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGGAATT--ACACTTCTCTCGCGAGG------TTATTCCCTTCAAATA-GTGCACAGAGAAAAACAA----TC------------------------CGCTTGGTTT-CGTTAGCTGCTGGCAC-GTCC-------------------------------------GGAAGGACATTCA-T-ATAGCCAGTT--TCTTGATAGTAGCCTTGCGACATTA--------
#=GS WM276/1-161 DE CP000286.1:c1112025-1111865 Cryptococcus gattii WM276 chromosome A, complete sequence
WM276/1-161                     -------------------------------------------------------------------------------------------------------------------------------------------------ACAGTGA-------CTGCAC--TTCGTTAAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGGAACT--ACACTTTCCTCGCAAGG------TTGTTCCCTTCAAATA-GTGCACAGA-AAAAACAA----TC------------------------CGCTTGGTTT-CGTTAGCTGCTGGCAC-GTCC-------------------------------------AGAAGGA-CACTCAT-ATAGCCAGTT--TCTTGATAGTAGCCTTGCGACATTA--------
#=GS R265/1-161 DE CP025761.1:877685-877845 Cryptococcus gattii VGII R265 chromosome 3, complete sequence
R265/1-161                      -------------------------------------------------------------------------------------------------------------------------------------------------ACAGTGA-------CTGCAC--TTCGTTAAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGGAACT--ACACTCTCCTCGCGAGG------TTGTTCCCTTCAAATA-GTGCACAGA-AAAAACAA----TC------------------------CGCTTGGTTT-CGTTAGCTGCTGGCAC-GTCC-------------------------------------AGAAGGA-CACTCAT-ATAGCCAGTT--TCTTGATAGTAGCCTTGCGACATTA--------
#=GS CryAmy/1-153 DE AWGJ01000012.1:146920-147072 Cryptococcus amylolentus CBS 6039 supercont1.12, whole genome shotgun sequence
CryAmy/1-153                    -------------------------------------------------------------------------------------------------------------------------------------------------ACAGTGA-------CTGCAC--TTCGTTAAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGGACC---ATCCTCTCTCTACGAGG------TTGACCCTTTCAATTA-GTGCACAGAGAAAA---------T------------------------TGCTTGGTTT-CGTTAGCTGCTGGCCC-GTCCTC---------------------------------------GGA-CCC-CATAATAGCCAGTT--TCTTGATAGTAGCCTTGCGACATC---------
#=GS CryWin/1-154 DE CP034272.1:151950-152103 Cryptococcus wingfieldii strain CBS7118 chromosome 12, complete sequence
CryWin/1-154                    -------------------------------------------------------------------------------------------------------------------------------------------------ACAGTGA-------CTGCAC--TTCGTTAAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGGACC---ATCCTCTCTCTACGAGG------TTGACCCTTTCAATTA-GTGCACAGAGAAA----------T------------------------TGCTTGGTTT-CGTTAGCTGCTGGCCC-GTCCTC---------------------------------------GGA-CCC-CATAATAGCCAGTT--TCTTGATAGTAGCCTTGCGACATCTC-------
#=GS CryFlo/1-155 DE RRZH01000013.1:179726-179880 Cryptococcus floricola strain DSM 27421 chromosome 12, whole genome shotgun sequence
CryFlo/1-155                    -----------------------------------------------------------------------------------------------------------------------------------------------T-ACAGTGA-------CTGCAC--TTCGTTAAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGGACC---ATCCTCTCTCTACGAGG------TTGACCCTTTCAATTA-GTGCATAGAGAAAA---------------------------------TTGCTTGGTTT-CGTTAGCTGCTGGCCC-GTCCTC---------------------------------------GGA-CCC-CATAATAGCCAGTT--TCTTGATAGTAGCCTTGCGACATCT--------
#=GS CryVH5/1-219 DE JANBXI010000002.1:c402198-401980 Cryptococcus sp. VH57_BW 2, whole genome shotgun sequence
CryVH5/1-219                    -------------------------------------------------------------------------------------------ACCTCCCGCTGTTCGAAACTTTTATCCCTCCCTCTCTTTCTCTCTTCTTCCTT-ACAGTGAA------TTGCAC--CTCGTTAAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGGAACTACGCTCCCCCTCCGAGC--------TTGATCCTTTCATATGCGTGCAAAGAGCAAA--------------------------------AACGCTTGGTTT-CGTTAGCTGCTGGCCCTTCCCT-------------------------------------CACGGGATATCTATAATAGCCAGTT--TCTTGATAGTAGCCTTGCGACATCCCGA-----
#=GS KwoMan/1-177 DE ASQD01000011.1:c465416-465240 Kwoniella mangroviensis CBS 10435 cont2.11, whole genome shotgun sequence
KwoMan/1-177                    -------------------------------------------------------------------------------------------------------------------------------------------------ACAGTGA-------TCGCAC--TTCGTTAAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGGTATTT-GCTATCATCCACACAGGA----TTAATACCTTTCAAATA-GTGCGTATAGTAGAAT-CATCTTTCATA-------------------AAGCTTGGTTT-CGTTAGCTGCTGGCCC-GGAC--------------------------------------GAGAGTCCTCATATAATAGTCAGTT--TCTTGATAGTAGCCTTGCAACATTCGAC-----
#=GS KwoBes/1-174 DE ASCK01000006.1:230425-230598 Kwoniella bestiolae CBS 10118 cont1.6, whole genome shotgun sequence
KwoBes/1-174                    -------------------------------------------------------------------------------------------------------------------------------------------------ACAGTGA-------TCGCAC--TTCGTTAAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGGTATTT-GCTAT-ATCCACACAGGA----TTAATACCTTTCAAATA-GTGCGTATAGTAGG--CTCAATCCCACA-------------------AAGCTTGGTTT-CGTTAGCTGCTGGCCC-GGAT-------------------------------------GAAAATCCATATTATAATAGTCAGTT--TCTTGATAGTAGCCTTGCAACATATC-------
#=GS KwoSha/1-203 DE NQVO01000009.1:157242-157444 Kwoniella shandongensis strain CBS 12478 scaffold00009, whole genome shotgun sequence
KwoSha/1-203                    -----------------------------------------------------------------------------------------------------------------------------------------------T-ACAGTG-------TTCGCAC--TTCGTTAAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGGTCCAT-GGTCACACTAAGACCTG------TAGT-CCTTTCAAATA-GTGCGTAGAGGAATACGTTTCTCCTTCTTTCGAGAGGGGGAAACAAAACGCTTGGTTT-CGTTAGCTGCTGGCCCCGTCTTCCACC----------------------------TTGTTGTGGTCGTACTTTAATAGCCAGTT--TCTTGATAGTAGCCTTGCGACATCC--------
#=GS KwoHev/1-182 DE ASQC01000089.1:129108-129289 Kwoniella heveanensis CBS 569 cont2.89, whole genome shotgun sequence
KwoHev/1-182                    -------------------------------------------------------------------------------------------------------------------------------------------------ACAGTGAAATT--ATCGCAC--TTCGTTAAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGGTCTGAATCTCCTCAATCGCGAG-------TCAGTCCTTTCAAATA-GTGCGTATAGCAGCGAAATAAAACGTATA------------------AAGCTTGGTTT-CGTTAGCTACTGGCCCGATTTA------------------------------------CCCAAATCATCATATAATAGCCAGTC--TCTTGATAGTAGCCTTGCAACATCC--------
#=GS KwoDej/1-183 DE ASCJ01000001.1:220085-220267 Kwoniella dejecticola CBS 10117 cont1.1, whole genome shotgun sequence
KwoDej/1-183                    -------------------------------------------------------------------------------------------------------------------------------------------------ACAGTGA-------TCGCAC--TTCGTTAAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGGTCTTTACCTAACAATACACGGTGG----TAAAATCCTTTCAAATA-GTGCGTATAGCAGTGTAACAATATT----------------------AAGCTTGGTTT-CGTTAGCTGCTGGCCCTATCTT-------------------------------GCGCAAGCA-AGGTATTTTTAATAGTCAGTT--TCTTGATAGTAGCCTTGCAACATCGTAT-----
#=GS CryDep/1-172 DE AWGL01000001.1:c1110195-1110024 Cryptococcus depauperatus CBS 7855 supercont2.1, whole genome shotgun sequence
CryDep/1-172                    ---------------------------------------------------------------------------------------------------------------------------------------CTTTTCCTT-ACAGTGAAAT----TTGCAC----CGTTAAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGGAATATGCCTCTCACTAAGAGAC-------TATTCCCT-TCACAGGTGTGCATATAACAAACA------------------------------TATGCTTGGTTT-CGTTAGCTACTGGCCCGGTTGA-----------------------------------------AAGACCTCTTCATAGCCAGTT--TCTTGATAGTAGCCTTGCGACAAGTTT------
#=GS BulAlb/1-170 DE CAMYTR010000009.1:c174656-174474 Bullera alba genome assembly, contig: jcf7180000012101, whole genome shotgun sequence
BulAlb/1-170                    -------------------------------------------------------------------------------------------------------------------------------------------------ACAGTGAA-CTCCTTAGTAA---TCG--AA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGG-ATGCCATGTTTCAGTTGGATCCG----------ATCCTTCAAATGGTGCGAAGATTGATACTTTAGTT------------------------TTGCTTGGTTT-CGTTAGCTGCTGGCACGTCTCGC---------------------------------------AAGAGATACCAAATAGCCAGTT--TCTTGATAGTAGCCTTGCAACATTCATCC----
#=GS VanFra/1-206 DE BEDY01000001.1:357400-357605 Vanrija fragicola DNA, scaffold: scaffold_1, strain: JCM 1530, whole genome shotgun sequence
VanFra/1-206                    -------------------------------------------------------------------------------------------------------------------------------------TCTTCTTCTTT-ACAGTGAAG------CGCTT-CCTCAAGTAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCCCCTGCCCTCGCTGGCGGGGGGTACCGGGGCAC-AGCCCCCCGGCGTCTCGTCGGGGATCAGGCTTGTGACCGCGCCAGAGCGAAC-----------ACGCTTGGTTT-CGTTAGCTGCTGGCACGCTCCTTT-------------------------------------GCGGGCACC--TAATAGCCAGTC--TCTTGATAGTAGCCTTGCGACATTCGG------
#=GS VanHUm/1-326 DE QKWK01000006.1:483756-484081 Vanrija humicola strain CBS 4282 CBS4282_scaffold06, whole genome shotgun sequence
VanHUm/1-326                    ------------------CCAACATCGGCATTCAGCAACAACGAGCGTCATCAAAGTACGGGAGCTAATGCGTTTCAACGCATTTGCTCCCGCGCCAAATGTCAGTATATAAGCCCAACTCCATCTCGCACCTTTTTTCTTTTC-ATATCAC--------CGCGC-TCTCACT----GTAAGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGCCTGCTGCCCGTCGCGCGAACCGCCGCTC-ACCACGCCAGTTTTTCGCGCAGATCCCCCACGCGGGCCTGTGCTCCCGAGAGCGCGTAGAGCGACCGCTTGGTTT-AGCTAGCAGCTGGCCCGTCTTC-------------------------------------------GGACAACTAATAGCCAGTT--TCTTGATAGTAGCCTCGCGACATGTCG------
#=GS TriGue/1-240 DE BCJX01000006.1:282000-282239 Trichosporon guehoae DNA, scaffold: scaffold_5, strain: JCM 10690, whole genome shotgun sequence
TriGue/1-240                    ---------------------------------------------------------------------------TCTCCCCCTGCCTCAGTCCAAGGATAAAAACTCGCCCCGCCGCGACTTTTCTCTTTTTCTTTTCTTTTT-ACCAACGCG----CCCGTCCTTCGCGCC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGCCCCTCTATGGGCGGTGCGTTCCGGCCCAGCATTCTGCTGGTGCATCGGGCGCCAGAGCAAA--------------------------------CCGCTTGGTTT-CGTTAGCTGCTGGCCCGTCGTCACC----------------------------------------GACTCTTTAATAGCCAGTT--TCTTGATAGTAGCCTTGCGACATTGCA------
#=GS CutDas/1-224 DE BEDX01000005.1:c1011887-1011664 Cutaneotrichosporon daszewskae DNA, scaffold: scaffold_5, strain: JCM_11166, whole genome shotgun sequence
CutDas/1-224                    ---------------------------------------------------------------------------------------------CCGCGCTCGCCCCCTCGCTGCGAAAATATCCACCAACTCTTCCATTGCTCT-----ACG--------CGCCTCCAAACCCCTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCCCACTGTGCGCGGCGGGGTAGGCGACCTCCCTCGCCCCCGTCTCGGGGAACGAGGCGTCGATCAGCGCTAGAGTGAG-----------------ACGCTTGGTTT-CGTTAGCTGCTGGCCCGCTT-------------------------------------------CGGCT----CGATAGCCAGTT--TCTTGATAGTAGCCTTGCGACAGATT-------
#=GS ApiBra/1-316 DE JAMALJ010000003.1:132400-132615 Apiotrichum brassicae strain M2204 ctg_3, whole genome shotgun sequence
ApiBra/1-316                    TGAAGCATCGATGATGTCGGAGTCTCGATGATGTCGAGTGCGAGGTGCCCCCATCCTTTATATCCTCCCCCCACACGTCCATATTTTCAGATGACTATAAAATCCCCCACAACTCCCACATTTTTCTCTTCTTCTTTTATTATC----AACA-------------------------GCGCGCCGACCCT---------------------------------------------------------------------------------------------------------------------------------------------------------CATGACC------------GACCAG-CACAGCAACATGTGTTGAATCGGTGTGGGCTGCGG-------TTTCCGCAGATGGTGCGCTAGAGTGA---------------------------------CAGCTTGGTTT-TGCTAGCAGCTGGCCCG------------------------------------------GCGAAAGCCATCATAATAGCCAGTT--TCTTGATAGTAGCCTTGCAACATTTTTA-----
Intron/1-13                     ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGrGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------CTGA-----------------YAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS CryGC7/1-281 DE JALPBX010000100.1:39553-39833 Cryptococcus sp. GC_Crypt_7 iso00_79_100, whole genome shotgun sequence
CryGC7/1-281                    --------------------------------------------------------------------------------------------------------------------------------------CTTCTTCTTT-ACAGTGAA-------CGCAC--TTTGT-----GTAAGTCT---------------------------------------------------------------------------------------------------ATATACCCTTCCTCATCACCGTCACTCTCCTCTATCA-TGTATGCTGCATGGGCAAGAAGCTGATCATAATA-ACGATGTGCAG-TAATCGGAGCGCGTA-AGCGATTT-AAACCGC----TGTCCCTCCTTCAAAATGGTGCGAAGACCGATTGAATCTCAATGATCATT----------------CGCCTGGTTTAAGCTAGCTGCTGGCCTGTCTTC----------------------------------------ATGGCAAACTTATTAGCCAGTT--ACTTGATAGTAGCCTTGCGACATCTCTC-----
#=GS CryGC5/1-270 DE JALPBZ010000086.1:c30713-30444 Cryptococcus sp. GC_Crypt_5 iso00_58_86, whole genome shotgun sequence
CryGC5/1-270                    -------------------------------------------------------------------------------------------------------------------------------------------TCTTT-ACAGTGAA------CCGCAC--TTTGT-----GTAAGTC-----------------------------------------------------------------------------------------ACCACCATCTCTCT---------CACACTGTCCTATCGCATCGTGACTGTATGCCCA----------GGAGCTGACCTTGATCAACGACGCGTAG-TAATCGGAGCGCATAAAGCGATAACCCACCGC----TGTCCCTCCTTCAAAATGGTGCGGAGACCGATTGTATCTCA-TGATCATT----------------CGCCTGGTTTAAGCTAGCTGCTGGCCTGTCTTC----------------------------------------ATGGCAAACTTATTAGCCAGTT--ACTTGATAGTAGCCTTGCGACATTCCC------
#=GS CryGC3/1-322 DE JALPCB010000020.1:112603-112844 Cryptococcus sp. GC_Crypt_3 iso00_45_20, whole genome shotgun sequence
CryGC3/1-322                    -------------------------------------------------------------------------------------------------------------CGATTTGCGCTTTTCTCTTCTCTTTCTTCTTCTTT-ACAGTGAA------CCGCAC--TTTGT-----GTAAGTC-----------------------------------------------------------------------------------------ACCACCATCATTACTATCATCATCCCTCTCACACTCTCCCATCGTATCGTATCGCGACATATGGCCAGAAGCTGACCTTGGATGGCGACGCGTAG-TAATCGGAGCGCATAAAGCGATAACCCACCGC----TGTCCCTCCTTCAAAATGGTGCGGAGACCGATTGTATCTCAATGATCATT----------------CGCCTGGTTTAAGCTAGCTGCTGGCCTGTCTTC----------------------------------------ATGGCAAACTTATTAGCCAGTT--ACTTGATAGTAGCCTTGCGACATCCCCAT----
#=GS SaiJCM/1-315 DE BCLC01000004.1:283380-283694 Saitozyma sp. JCM 24511 DNA, scaffold_3, whole genome shotgun sequence
SaiJCM/1-315                    ---------------------------------------------------------------------------------------------------------------------ATCCTTTTCTTCCTCTTATTTTCTCTT-GAATCTA-------TCGCACCACTTGTCAAT-GTGAGTCCCAAGTCC---------------------------------------------------ATCGGTACTCTCCGCATGGATGATGTTAGCGGGATGCGCGAGTCGCAGCATCCCGCAATCTGCGCCAATGGAGCCTCACTTTGGTTGCGAAACGAGCATCACTGACATTT---------CCTCAG-----ATTGGTCCGC---ACGTCTCTTGCAGGACGCGG-----TCCTCCCATGTGGTGCGGAGAGCGAA--------------------------------CACGCTTGGTTT-CGTTAGCTGCTGGCCTCCTTC----------------------------------------------GGGAACAATAGCCAGTT--TCTTGATAGTAGCCTTGCGACATGTTC------
#=GS KocImp/1-298 DE NBSH01000012.1:546348-546645 Kockovaella imperatae strain NRRL Y-17943 BD324scaffold_12, whole genome shotgun sequence
KocImp/1-298                    -------------------------------------------------------------------------------------------------------------------------ATTGAATCGGCTTCTTCTCTTTC-----ATA-------CTGCACCATCTCTCAAT-GTGAGTC-----------------------------------------------------------------------------------------------------------------GAGCATGAAG--------AGGGATTGGACAGGACAGTGGGACAAAGACTGACAGCATGTGAAA-----CAG--ATGGATTGATTGGGTCTCATTATTCCCCTCTCAA------CCGCCGCGGACAGGTGCGGAGACCAAACACAGA---------------------------CCGCTTGGTTT-CGTTAGCAGCTGGCCCAATCGTCGACTTGTAATCTTCTCCGTCTTGGAGAGGTCACATACAGACAACCATGACAATAGCCAGTT--TCTTGATAGTAGCCTTGCGACATGATAT-----
#=GS CryGC4/1-284 DE JALPCA010000558.1:6403-6686 Cryptococcus sp. GC_Crypt_4 iso00_46_591, whole genome shotgun sequence
CryGC4/1-284                    -----------------------------------------------------------------------------TGTAAGCAGATTTCTCGCTGCAGCCGCGCGAAACTGTTTAAATCCCTTTCATCTCTTCTTCTTCTTT--AATTCA-------TCGCAT--CAATTCT---GTAAGTCA---------------------------------------------------------------------------------------------------TGACGAGAGTACGAGTGGTG----------------------------------AACCCGCTGACATACT----------TTAG--TATTGATTGGAATTCGTCGTTACCCGATTCCAG--------TCTTTTGTTTAGATGCGAAGAGAAATCTTTGAA---------------------------CGCTTGGTTT-CGTTAGCTGCTGGCCCTTCTTCATT-----------------------------------GCGAGGAAAAAACAATAGCCAGTT--TCTTGATAGTAGCCTTGCGACATGC--------
#=GS TreYok/1-209 DE BRDC01000024.1:c836948-836740 Tremella yokohamensis NBRC 100148 DNA, KCNB35TY.24, whole genome shotgun sequence
TreYok/1-209                    ------------------------------------------------------------------------------------------------------------------------------------------TTCTTC----AACA-------TCGCAC--TTCGTT----GTGAGTAG---------------------------------------------------------------------------------------------------TTGGCATTCAAGTCTGCTAGG---------------------------------ACGTCGCTGATTTGT-----------GCAG--AATCGACCC----CTTCCGCATAACGATGGGAAGTGG----TCT-TCAAATACGTGCGAAGA-CGAA--------------------------------CGAGCTTGGTTTTTGCTAGCAGCTGGCCAGCCT--------------------------------------------ACGGGCACCGATAGCCAGTC-TTCTTGATAGTAGCCCTGCGACATCGTCA-----
#=GS TreFuc/1-238 DE LBGW01000648.1:c21249-21012 Tremella fuciformis strain tr26 contig648, whole genome shotgun sequence
TreFuc/1-238                    -------------------------------------------------------------------------------------------------------------CCCCCTAGACGAAACTGAGAGCAGCTCTCTTCTTC----AACA-------TCGCAC--TTCGTT----GTGAGCAG------------------------------------------------------------------------------------------------------------------------------------TTGCCTTTTATCTGCGCAAGGACGTGGCTGACGGATGA----------CAG-AATCGACCCCTTCCGCATCACGATGGGAAGTGG----------TCTTCAAATACGTGCGAAGACGAAC---------------------------------GAGCTTGGTTTTTGCTAGCAGCTGGC-----------------------------------------CAGCCTACGGGC---ACCGATAGCCAGTC-TTCTTGATAGTAGCCTTGCGACATCGTC------
#=GS TreTag/1-236 DE CAJHEQ010000426.1:c14823-14588 MAG: Tremellales sp. Tagirdzhanova-0007 genome assembly, contig: TREM_426, whole genome shotgun sequence
TreTag/1-236                    ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACATCCCCATGGCCCATCCAATAAATACAGAAACCAACACTGACTTCGACGGGCA----ACAG-TATCGACCGAGATGCCTCATCATCCGAGCCTCGG--------CCCATTTTTGATTGGCGCGAAGAAGGATAATCCCTTGAAAAGGAT--------------CCGCTTGGTTT-CGTTAGCTGCCGGGCCCCTCTGACCATGATTTTTTTC------------------------GTGGTCGAGATCCATAGCCGGTT--TCTTGATAGTAGCCTTGCGACAGATA-------
#=GS TreMes/1-239 DE AFVY01000060.1:68395-68633 Tremella mesenterica DSM 1558 strain Fries TREMEscaffold_1_Cont60, whole genome shotgun sequence
TreMes/1-239                    ---------------------------------------------------------------------------------------------------------TAACTTTTCTTCTCCGTCATCCAACCCGAAACTTTTCTC-----AT---------CGCAC-TTTTG------GTGAGTTT-----------------------------------------------------------------------------------------------------------------------------------ATAAAGTGAATTGATATGAAGTAGTAAGCTGATGAGAT-----------CAG-TACGACCTGACAGTATGCTTGAAAGAGCTGTTAGAAG---------TACATAAAGTGCTAGAGAAAA----------------------------------ACGCTTGGTTT-CGCTAGCTACTGGT------------------------------------------CGCCGAGAGGCAAGAACAATAACCAGTCA--CTTGATAGTAGCCTTGCGACATCTGTG-----
#=GS PapLau/1-239 DE JDSR01000175.1:8406-8604 Papiliotrema laurentii RY1 contig_183, whole genome shotgun sequence
PapLau/1-239                    -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACCGTTCCAAACCCCTCTGCCTCGAGAGAGCTCGAGGAACGTG-CGGCGGACCATGCACCGCTCTCAGTTAAGACATCCGCTGACAATT-----------GCAG--ACTTTAA--GGCCTTCCCTTCTTTCCTCGATGGGTCTGCA-CTTTGGAAATCAGTGCTGAGAGTATTCTGAAATAA-----------------------GACGCCTGGTTT-CGCTAGCTGCTGCTTGGACT-------------------------------------------------ACCTACACGCA-GT---GCTTGATAGTAGCCTCGCGACATTATTC-----
#=GS PapTer/1-288 DE JAHXHD010000830.1:c4528-4241 Papiliotrema terrestris strain LS28 scaffold-829, whole genome shotgun sequence
PapTer/1-288                    -------------------------------------------------------------------------------------------------------------------GACGTCGACGTTGACTTGTTCTCTTCTTT-ACAGTGAA-------CGCAC---TTTT-----GTAAGTCCGC---------------------------------------------------------------------TACC--TCCTTCCGA-CCCCCTCCTCCCGTCCGCAGAG--------CTGTGACGGAGAATGCCGC-TGGAGAAGGAGGAACAGCCGTGCTGA--------------CCCCAG--AATCAATCT-AAGCTCTTCTTCCTACGAGACTTCG-------ATTTTCAAGTGATGCGAAGAGCAATGGTTATAAACTGTAT-------------------CGCGGGGTTT-CGCTAGCTGCTGGTCC--------------------------------------------------AATAACCCATCACCAGT---GCTTGATAGTAGCCTTGCGACATCGCATC----
#=GS CryFla/1-277 DE CAUG01000630.1:c26226-25950 Cryptococcus flavescens NRRL Y-50378 WGS project CAUG00000000 data, contig NODE_1868_length_106069_cov_46_765984, whole genome shotgun sequence
CryFla/1-277                    ---------------------------------------------------------------------------------------------------------------------TTCTCGACGTTCTCTTCTCCCTTCTTT-ACAGTGAA-------CGCAC---TTTT-----GTAAGTTGCT--------------------------------------------------------------ACGGTCTTCCCTTCCCCTCTGCAACCCAACGCAGTCGTGCGAGATGGT------------------------CGAATGA-CAAGGGGAACACG-GCTGA--------------CCTCAG--AATCAATCT-AAGCTCTTCTTCCTACGAGACTTCG-------ATTTTCAAGTGATGCGAAGAGTAATGGTTATATACTGTAT-------------------CGCGGGGTTT-CGCTAGCTGCTGGTC--------------------------------------------------AAA-AACCCATCACCAGT---GCTTGATAGTAGCCTTGCGACATCATAA-----
#=GS NaeEnc/1-370 DE MCFC01000081.1:c24697-24478 Naematelia encephala strain 68-887.2 BCR39scaffold_81, whole genome shotgun sequence
NaeEnc/1-370                    ----------------------------------------------------------------------------------------------------------------AGGCGAAATTCGCTGAGTATGTCTCTCTTTCC----AACAA-------CGCACCAACCT------GTGAGTACTGTCTCAGCTCTCTGTTATCTGTTTGGTTTCC-----ATTCT---AGGAGGAGTGAT-TCTATCAGTGACATA-TCGGGCTTTAAGCCAAATGGCTTCTCACGGTATCATGGGGAGGGGGGAAATCCACGATTGAAGAACGAGGAAGAGCAAACAAAAGCTGACCCATCTATT------ATAG-TATCGACCGATCCTCGATCTTTACACGGACTCGG--------TCCATACTGAGGTTGCGTATATTAAATAAAT----------------------------ACGCTTGGTTT-CGTTAGCTGCTGGCCCCTCTTTT----------------------------------------CATGAGCTCTAATAGCCAGTT--TCTTGATAGTAGCCTTGCGACACTATA------
#=GS NaeAur/1-354 DE JAKFAO010000012.1:c842028-841675 Naematelia aurantialba strain NX-20 Contig12, whole genome shotgun sequence
NaeAur/1-354                    -----------------------------------------------------------------------------------------------------------------------------CTCAGTGTCCCGTCTCTTC-----AT---------CGCACCATCCT------GTGAGTACAGTCTCTGCCAATTCTGGCTTCCCTACACATCCTGCCGGTGAACGACGCGGTGAGAAGCACTTCAGAGGAGCCTCATGTCTTGCTGTGAATATGAAGCTGCCTACACTGTCATCGGGCGCTTCGGAACGGATTT-GGCGAGAGGACGA-TCGGGCACTGCTGACGGTTTT--------CGCAG-TATCGACCGATCCTCAACATG-ACACGGACTCGG--------TCCATACTAAGGTTGCGCAGATCAAAT--------------------------------ACGCTTGGTTT-CGTTAGCTGCTGGCCCCTCCTT------------------------------------------GAGAGCTCCAATAGCCAGTT--TCTTGATAGTAGCCTTGCGACATTCCCG-----
#=GS CrySki/1-230 DE BCHT01000022.1:170073-170302 Cryptococcus skinneri DNA, scaffold: scaffold_21, strain: JCM 9039, whole genome shotgun sequence
CrySki/1-230                    ----------------------------------------------------------------------------------------------------------------------------------TTTTCTTCTTCTTC-----AC---------CGCACC--TTCCT----GTAAGCCCC------------------------------------------------------------------------------------------------------------------------------TTCCATTCAATCTCACAACATACGAACGTAAGCTAACATTCCC--------AACAG-TATCAGCCAACCTCCTCTCACACCGAGTCTGG---------CCCATTAATCTGTGTGCGCAGACAAACTCCGTTT--------------------------ACGCCTGGTTT-CGTTAGCTGCTGGCCCCCTT-------------------------------------------CGGGGAAAACAATAGCCAGTT--TCTTGATAGTAGCCTTGCGACATTTATG-----
#=GS CryGC2/1-249 DE JALPCC010000020.1:c14801-14553 Cryptococcus sp. GC_Crypt_2 iso00_70_20, whole genome shotgun sequence
CryGC2/1-249                    ------------------------------------------------------------------------------------------------------CCTCATATGAAGAACAGAACCGAAACTATCTCTTTCCTCTTT----AA----------CGCATCAATTCCTAT--GTAAGTC-----------------------------------------------------------------------------------------------------------------------------------AGGTCAAATGTGCAGATTGGGCAACATAGCTGATTG-------------GTAG--ATATGCTGTACCTAGATATACTTGGTATGGCTGG-------------CTTGAAGTGCGCAGAGGGA----------------------------------TAGCTTGGTTT-CGCTAGCAAACGGCCCGCTCT---------------------------------------GGCAGCGATCTTTATTAGCC-GTATTTCTTGATAGTAACCTTGCGACATACACATATAT
//

• Image source 1.3:

# STOCKHOLM 1.0
#=GF RW van Nues, September 2023
#=GF https://coalispr.codeberg.page/paper
#=GS H99/1-197 DE HACAcnag00650 1: [1,690,823 - 1,691,020] (+199) CP003820.1:1690824-1691020 Cryptococcus neoformans var. grubii H99 chromosome 1, complete sequence
H99/1-197                       ----------------------------------------ATCTTATTTTTTACAATGGATGCCC-CCT-CGGCCC-GGCTGCCCAGCCCCACAGCAGCC-----------GTAGACAGTCGAGGG-------CAACGCAGCGC----------ACTCCTAAGAACAA-----CCGGGCGCTTCTTTGGCTCACCAGGAGTATCACTACC-----ATGAGCA-GGCGAGTCACAATGCCCCGTATATTCTTCTACGCCGAGTACACCGTATGCATCTTT--------------------------------------------------------------
#=GS pre-HACAcnag00650/1-199 DE AE017341.1:1709898-1710096 Cryptococcus neoformans var. neoformans JEC21 chromosome 1, complete sequence
pre-HACAcnag00650/1-199         ---------------------------------TCTCCTCATCTTATTT-TTACAATGGATGCCC-CCT-CGGCCC-GGCTGCCGAGCCCC-CAGCAGCC-----------GTAGACAGCCGAGGG-------CAACGCAGCGC----------ACTCCTAAGAACGA-----CCGGGCGCTTCTTTGGCTCACCAGGAGTGCCGCCACG-----ATGAGCA-GGCGAGTCACAATGCCCCGTATATTCT-CTACGC--AGTACACCCTATGCATCTTT--------------------------------------------------------------
#=GS HACAcnag00650/1-166 DE AE017341.1:1709905-1710070 Cryptococcus neoformans var. neoformans JEC21 chromosome 1, complete sequence
HACAcnag00650/1-166             ----------------------------------------ATCTTATTT-TTACAATGGATGCCC-CCT-CGGCCC-GGCTGCCGAGCCCC-CAGCAGCC-----------GTAGACAGCCGAGGG-------CAACGCAGCGC----------ACTCCTAAGAACGA-----CCGGGCGCTTCTTTGGCTCACCAGGAGTGCCGCCACG-----ATGAGCA-GGCGAGTCACAATGCCCCGTATATTCT-------------------------------------------------------------------------------------------
#=GS WM276/1-202 DE CP000286.1:1414217-1414418 Cryptococcus gattii WM276 chromosome A, complete sequence
WM276/1-202                     ----------------------------------------ATCTTATTTTTCATATTGGATGCCC-CCT-CGGCCC-GGCTGCCCAGCTCCCCAGCAGCC-----------GTAGACAGTCGAGGG-------CCACGCAGTGC----------ACTCCTAAGATCAA-----TCGGGCGCTTCTTTGGCTCACCAGGAGTACCACTACC-----ATGAGCA-GGCGAGTCACAATGCCCCGTATATTCTTTTCGTCT-AGTCTGGATACGCTCTATGCATCTTT--------------------------------------------------------
#=GS R265/1-169 DE CP025761.1:c583908-583740 Cryptococcus gattii VGII R265 chromosome 3, complete sequence
R265/1-169                      ----------------------------------------ATCTTATTTTTCACATTGGATGCCC-CCT-CGGCCC-GGCTGCCCAGCTCCCCAGCAGCC-----------GTAGACAGTCGAGGG-------CCACGCAGCGC----------ACTCCTAAGATCAA-----TCGGGCGCTTCTTTGGCTCACCAGGAGTTATTCTACC-----ATGAGCA-GGCGAGTCACAATGCCCCGTATATTCTT------------------------------------------------------------------------------------------
#=GS CryVH5/1-229 DE JANBXI010000005.1:82360-82588 Cryptococcus sp. VH57_BW 5, whole genome shotgun sequence
CryVH5/1-229                    ----------------CATCCATTTCTCCCCTTCTTCTTCATCTTATTTTTCACAACGATTGCCC-CCCACGGCCCCCGCGGTGCAGCCA-CCAGGCCCTTCACGGCGCGGGTCGACAGCCGTGGGTCTGCCTTCGGGCAGGGAGCGG----CACATCTGCTGAGCGA----TACGGGCGCTACTTTGGCTCACCGGGAGTGAGTAACG------ATGAGT-CGGCGAGTCACAATGCCCCGGACAGAAAGAATTCC-ATGCA------------------------------------------------------------------------------
#=GS CryAmy/1-253 DE MEKH01000002.1:691703-691955 Cryptococcus amylolentus CBS 6273 supercont2.2, whole genome shotgun sequence
CryAmy/1-253                    -----------AAGCCAAATTTATCTCCAGGCTCTTCTTTATCTTTTTTTTATTCAAGAATGCCC-CCCACGGCCCTC--CTCGCCACTGTACCGACGC-------GAGGGGTCGACAGTCGTGGG-CTGTCTATCAGCAGCGG---------CAGATCTGAGAGCTA----TATGGGTGCTACTTTGGCTCACCAGGAGTCC---GCAAGGACTATGATCATGGCGAGTCACAATGCCCCAGATACGATTATACCGGATGTACACACTTTGTTTCTGGAGATATTGATCT--------------------------------------------------
#=GS CryWin/1-263 DE AWGH01000008.1:458940-459202 Cryptococcus wingfieldii CBS 7118 supercont1.8, whole genome shotgun sequence
CryWin/1-263                    CACACCTCAACAAGCCAAATTTATCTCCTGGCTCTTCTTTATCTTTTTT-TATTCAAGAATGCCC-CCCACGACCCTC--CTCGCCGCTGTACCGACGC-------GAGGGGTCGACAGTCGTGGG-CTGTCTACCAGCAGCGG---------CAGATCTGAGAGCTA----TATGGGTGCTACTTTGGCTCACCAGGAGTCC---GCAAGGACTATGATCATGGCGAGTCACAATGCCCCAGACACGATTATACCGGATGTACACACTTTGTTTCTGGAGATATCAATCT--------------------------------------------------
#=GS CryFlo/1-266 DE RRZH01000001.1:c1609198-1608933 Cryptococcus floricola strain DSM 27421 chromosome 1, whole genome shotgun sequence
CryFlo/1-266                    ----------CAAGCCAAATTTATCTTCAGGCTCTTCTTTATCTTTTTT-TATTCAAGAATGCCC-CCCACGACCCTC--CTCGCCGCTGTACCGACGC-------GAGGGGTCGACAGTCGTGGG-CTGTCTACCAGCAGCGG---------CAGATCTGAGAGCTA----TATGGGTGCTACTTTGGCTCACCAGGAGTCCCCCGCAAGGACTATGATCATGGCGAGTCACAATGCCCCAGACACGATTATACCGGATGTACACACTTTGTTTCTGGAGATATCGATCCATTCTGGAAG----------------------------------------
#=GS TriAsa/1-212 DE SCGW01000264.1:16103-16314 MAG: Trichosporon asahii isolate N5_275_008G1 N5_275_008G1_scaffold_366, whole genome shotgun sequence
TriAsa/1-212                    ------------------------------------TTCTCCCAATTTTCTATACACGGA-GCCCGTCCACGAACCTC---TGCTGGGGCCTTCTACCA-------GCAGTGTTGACACTCGTGGAGC-GTTGATTCGCAGTGGT----------GCTCTCAGAGCAAC-----CGGGAGCTACTTTGGCTCGCGCAATAGGGAGGTCACTCCCGTTGACG-GTGGGAGTCACAATGCCCCGGACATT-TTGTACGCAATGCACGATAAGAGTGATC----------------------------------------------------------------
#=GS TriCor/1-213 DE JXYL01000010.1:c1129729-1129517 Trichosporon coremiiforme strain JCM 2938 scaffold_0010, whole genome shotgun sequence
TriCor/1-213                    ------------------------------------TTCTCCCAATTTTCTATACACGGA-GCCCGTCCACGAACCTC---TGCTGGGGTTCTCTACCA-------GCAGTGTTGACACTCGTGGAGC-GTTGATTCGCAGTGGC----------GCTCTGAGAGCAAC-----CGGGAGCTACTTTGGCTCGCGCAATAGGGAGGTCTCTCCCGTTGAAG-GTGGGAGTCACAATGCCCCGGACATTTTTGTACGCAATGCACCTAGACTTTTTTT----------------------------------------------------------------
#=GS BulAlb/41-365 DE CAMYTR010000140.1:141506-141830 Bullera alba genome assembly, contig: jcf7180000012241, whole genome shotgun sequence
BulAlb/41-365                   -------GGGAACTATGATCCTCCTCTTGCTCTTCTTCTTCACTAATTTCATAAAACAGATACCCTCA--CGGCCCTC---CCCCAG--GCCTCGACCTAGGAC--GGGGAGTCGACAGTCGTGAGACGCTTTCTTCGGAAGGTGCACAGTGGATCATCTCAGAGCGAAATACATTGGCGCTTCTTTGGCTCGCCGGGAGAGCTGTAACTGGCTTGATGAGGTGGGGAGTCACAAAGCTCCAGACAGACGATTCGGACTAGGAAGGTGTGTGGGTTGTATAGGAGAGAAGTCAACCAGGACATGCAATCCTGCCATCAGCTGGAAGGTGTCACACGACCTG
//

• Image source 1.4:

# STOCKHOLM 1.0
#=GF RW van Nues, September 2023
#=GF https://coalispr.codeberg.page/paper
#=GS CNAG_12094/1-286 DE CP003820.1:1888826-1889111 Cryptococcus neoformans var. grubii H99 chromosome 1, complete sequence
CNAG_12094/1-286            ----------------------------------------------------------------------------------------------------------------------------------------------------------------ACAAACCTA------CAGCGTCCCCAATTCCCCA-TCGGTGCTACGAG------CTCCCTTCACTGCCGATTCGTCGGTAT------------GGGTCGCGTGA--GCTAAC-ACGATCGTTTTGGGGCCAGACAGGACGTTGTGAACAAA--------------------------TGTGTATTCTCTCTGACTCTTTCGGGAGAAGGAGAGGGTGCCAG-------------------------GCTACGCGATTAAAACAACTTTGAG----GAGAGAAATCT----------------ATGAGTCAGAGTCACCTATGAGTAGCCACATTTTTATCATCTCTTAAAAGTTTGAATGCATTTT---CCCTGCGTATCTTTTGAAA-----------------------------------------------------------------------
#=GS HACAcnag12094/1-285 DE AE017341.1:1910815-1911099 Cryptococcus neoformans var. neoformans JEC21 chromosome 1, complete sequence
HACAcnag12094/1-285         ----------------------------------------------------------------------------------------------------------------------------------------------------------------ACAAACCTA------CAGCGTCCCCAATTCCCCA-TCGGTGCTACGAG------CTCCCTTCCCTGCTGATTCGTCGGTCT------------GGGTCGAGTGA--GCTAAC-ACGATCGTTTTGGGGCCAGACAGGACGTTGTGAACAAA--------------------------TGTGTACTCTCTCTGACTCTTTCGGGAGAAGGGGAGGGTGCCAG-------------------------GCTACGCGATTAAAACAACTTTGAGGA--GAG--AAATCT----------------ATGAGTCAGAGTCACCTATGAGTAGCCACATTTTTATCATCTCTTAAGCGCTTGAATGCATCTA----CCTGTGTATCTTTTGAAA-----------------------------------------------------------------------
#=GS WM276/1-243 DE CP000286.1:1615536-1615778 Cryptococcus gattii WM276 chromosome A, complete sequence
WM276/1-243                 ----------------------------------------------------------------------------------------------------------------------------------------------------------------ACAAACCTA------TAGCGTCCCCAATTCCCCA-TCGGTGCTACGAG------CTCCCTTCCTTGCCGATTCGTTGGTCT-------------GGTCGCGTGA--GCTAAC-ACGACCGTTTTGGGGCCAGACAGGACGTTGTGAACGAA--------------------------TGTGTACTCTCTCTGACTCTTTCGGGAGAAGGGGAGGCTGCCAG-------------------------GCTACGCGATTAAAACAACTTTGAGGA--GAG--AAATCT----------------ATGAGTCAGAGTCACCTATGAGTAGCCACATTTTTATTATC--------------------------------------------------------------------------------------------------------------------
#=GS R265/1-286 DE CP025761.1:c382725-382440 Cryptococcus gattii VGII R265 chromosome 3, complete sequence
R265/1-286                  ----------------------------------------------------------------------------------------------------------------------------------------------------------------ACAAACCTA------CAGCGTCCCCAATTCCCCA-TCGGTGCTATGAG------CTCCCTTCCTTGCCGATTCGTCGGTCT-------------GGTCGCGTGA--GCTAAC-ACGACCGTTTTGGGGCCAGACAGGACGTTGTGAACGAA--------------------------TGTGTACTCTCTCTGACTCTTTTGGGAGAAGGGGAGACTGCCAG-------------------------GCTACGCGATTAAAACAACTTTGAGGA--GAG--AAATCT----------------ATGAGTCAGAGTCACCTATGAGTAGCCACATTTT--------CTCAAGCGCTTGAATGCATCCA----CTTGTGTATCTGTTGAAAATCATCGAGA-------------------------------------------------------------
#=GS KwoSha/1-285 DE AE017341.1:1910815-1911099 Cryptococcus neoformans var. neoformans JEC21 chromosome 1, complete sequence
KwoSha/1-285                ----------------------------------------------------------------------------------------------------------------------------------------------------------------ACAAACCTA------CAGCGTCCCCAATTCCCCA-TCGGTGCTACGAG------CTCCCTTCCCTGCTGATTCGTCGGTCT------------GGGTCGAGTGA--GCTAAC-ACGATCGTTTTGGGGCCAGACAGGACGTTGTGAACAAA--------------------------TGTGTACTCTCTCTGACTCTTTCGGGAGAAGGGGAGGGTGCCAG-------------------------GCTACGCGATTAAAACAACTTTGAGGA--GAG--AAATCT----------------ATGAGTCAGAGTCACCTATGAGTAGCCACATTTTTATCATCTCTTAAGCGCTTGAATGCATCTA----CCTGTGTATCTTTTGAAA-----------------------------------------------------------------------
#=GS CryWin/1-337 DE CP034261.1:85363-85699 Cryptococcus wingfieldii strain CBS7118 chromosome 1, complete sequence
CryWin/1-337                ----------------------------------------------------------------------------------------------------------------------------------------------------------------ACAAACATAA-----CAGCGTCCACAATTCCCCA-TCGGTGCT--GAG------CCACCTCTTCC----CCTCGG-------------------GGTCGAGCGAG-GCTGCT-ACGACCGCTTTGGGGCCAGACAGGACGTCGTGATTGA-----------------------------CGAAA-GCCATCGGTTCTTC--GGAGCTGGCG-GTGACTAGG-------------------------GCTACGCGATTAAAACAACTTTGAGGA--GAG--CAATCT----------------CTGAGTCAGAGTCACCTATGAGTAGCCACATTT-CTTACATAGCAGCCTTGTTGAATGAATC----GTCTTGCGCTCCAATAGTCCAATGGGATTGGAACCTGAAAATGATCGCGGAGTCTAAAATCCGAACGCAAGCTGCCATCTACCATCACCCA
#=GS CryAmy/1-262 DE MEKH01000002.1:66325-66586 Cryptococcus amylolentus CBS 6273 supercont2.2, whole genome shotgun sequence
CryAmy/1-262                ----------------------------------------------------------------------------------------------------------------------------------------------------------------ACAAACATA------CAGCGTCCACAATTCCCCA-TCGGTGCT--GAG------CCACCTCTTCC----CCTCGG-------------------GGTCGAGCGAG-GCTGCC-ACGACCGCTTTGGGGCCAGACAGGACGTCGTGATTCA-----------------------------CGAAA-GCCACCGGTTCTTC--GGAGCTGGCG-GTGAATAGG-------------------------GCTACGCGATTAAAACAACTTTGAGGA--GAG--AAATCT----------------CTGAGTCAGAGTCACCTATGAGTAGCCACATTT-CTTATATAGCAGGCTTGTTGGATGAATG----GTCTTGCGCTTCATTAG--------------------------------------------------------------------------
#=GS CryFlo/1-289 DE RRZH01000001.1:c2320871-2320583 Cryptococcus floricola strain DSM 27421 chromosome 1, whole genome shotgun sequence
CryFlo/1-289                ------------------------------------------------------------------------------------------------------------------------------------------------------TTCTTCTTCAACAAAACATGA----CAGCGTCCACAATTCCCCA-TCGGTGCT--GAG------CCACCTCTTCC----CCTCGG-------------------GGTCGAGCGAG-GCTGCC-ACGACCGCTTTGGGGCCAGACAGGACGTCGTGATTGA-----------------------------CGAAA-GCCATCGGTTCTTC--GGAGCTGGCG-GTGAATAGG-------------------------GCTACGCGATTAAAACAACTTTGAGGA--GAG--AAATCT----------------CTGAGTCAGAGTCACCTATGAGTAGCCACATTT-CTTACATAGCAGCCTTGTTGAATGAATGAATGGTCTTGCGCTTCAATGGACTGGAACCCG---------------------------------------------------------------
#=GS KwoBes/1-203 DE ASCK01000005.1:2166500-2166702 Kwoniella bestiolae CBS 10118 cont1.5, whole genome shotgun sequence
KwoBes/1-203                -------------------------------------------------------------------------------------------------------------------------------------------------------------TAACCCCCCTAGTT--AAACTCATCCCCAATTCCCCA-TCGATGCGAAGAG------CTCCG---TCCTTTCTTCTGAAA----------------GGGT---GTGA--GCTAAA-ACGATCGTCTTGGGGCCAGACAGGATGTTTCGATTGA-----------------------------------------------TCCACAAGAA---------------------------------------GTCACCTGCTTAAAACAACTTTGAGGATTGAG--TAATCT----------------ATGATTCAAAGTCACCTATGGGTAGCTACATTTTGT-------------------------------------------------------------------------------------------------------------------------
#=GS KwoMan/1-274 DE ASQF01000002.1:c86480-86207 Kwoniella mangroviensis CBS 8886 cont1.2, whole genome shotgun sequence
KwoMan/1-274                ------------------------------------------------------------------------------------------------------------------------------------------------------------CGGTACGTATCC-------AAGCATCCCCAATTCCCCA-TCGATGCGAAGAG------CTCCAACCT-AGGTTTCTAGGTT------------------GT-GATTTA--GCTAAA-ACGATCGTCTTGGGGCCAGACAGGATGTTTTGATTAA-----------------------------------------------TCTGTCAAAAGAA------------------------------------GCTAACTGATTAAAACAACTTTGAGGATCGAGTCATTTCT----------------ATGATTCAAAGTCACCTATGGATAGCTACATT-----ATATATCTCTCTCGCTTATATGCATTTCTATCATGACTCTTGACTCATCACTTGTCATTGATTATTTGGTGG------------------------------------------------
#=GS KwoDej/1-231 DE ASCJ01000058.1:415545-415775 Kwoniella dejecticola CBS 10117 cont1.58, whole genome shotgun sequence
KwoDej/1-231                ------------------------------------------------------------------------------------------------------------------------------------------------------TAACCCGCAGTAGTGTCAAA-----ATACATCCCCAATTCCCCATTCGATGCTTTAAAG-----CTCCTTCTTT------TCCGTAGCAATAC-------GGGAAATC-TGTGAA-GCTACC-ACGATCA--TTGGGGCCAGACAGGATGTTTTGATAAA----------------------------------------CCCTCGTTCTGCAAAGTCCGAGGGA-------------------------------GCTAACTGATTAAAACAACTTTGAGGACCGAG--TAATCT----------------ATGATTCAAAGTCACCTATGGATAGCTACAATTAAT-------------------------------------------------------------------------------------------------------------------------
#=GS CryVH5/1-265 DE JANBXI010000030.1:c195744-195480 Cryptococcus sp. VH57_BW 30, whole genome shotgun sequence
CryVH5/1-265                ----------------------------------------------------------------------------------------------------------------------------------------------------------TCTTCTTTCTCTCCTC-----AAGCGTCCACAATTCCCCA-TCGGTGCTACGAG------CTCCCTCCCC-------TCGGGGAGG-----------------CG-CTG---GCTAAC-ACGACCGTCTTGGGGCCAGACAGGACGTCTTGATCAA------------TTTCCGCGGTCTTTAGCGCCCTCTTTTGCGTCTTGCCTGGGCAACTGGGTGAGAGGGAGGGGGTGCGAGGGGCTGTGAA-----GCTACGCGATTAAAACAACTTTGAGGA--GAG--AAATCT----------------CTGAGTCAGAGTCACCTATGAGTAGCTACATACTG--------------------------------------------------------------------------------------------------------------------------
#=GS CryGC3/1-266 DE JALPCB010000123.1:c14399-14134 Cryptococcus sp. GC_Crypt_3 iso00_45_123, whole genome shotgun sequence
CryGC3/1-266                -----------------------------------------------------------------------------------------------------------------------------------------------------------TGATAACAAACCA-------TCGCAGCCCCAATTCCCCA-TCAGTGCAATGAG------CTCCGTCGCCC-----TTCGGGGGGA-----------------TGTGTG---GCTAC-AACGACCGA--GGGGGCCAGACAGGTCGCGTGGAATGA-----TCATAGCACGTCAAAAAGCCAGAGG--TGCGCTCGTCGGA--CTCGT--TCGATGAGAATGCTCTTTGGTTTTTCTGGCGCTGTTTC----GCTACCTGCTTAAAACAACTTTGAGGA--GAG--TTGTCA----------------ATGAGTCAGAGTCACCTATTGGTAGCTACATTCACC-------------------------------------------------------------------------------------------------------------------------
#=GS CryGC5/1-266 DE JALPBZ010000093.1:c18098-17833 Cryptococcus sp. GC_Crypt_5 iso00_58_93, whole genome shotgun sequence
CryGC5/1-266                ---------------------------------------------------------------------------------------------------------------------------------------------------------------TACAAACAAACCA---TCGCAGCCCCAATTCCCCA-TCAGTGCAAAGAG------CTCCGTCGCCC-----TTCGGGGCGA-----------------TGTGTG---GCTACAACCG-CCGA--GGGGGCCAGACAGGTCGCGTGGAACGA-----TCATAGCACGTCAGAGACCCAGAGG--TGCGCTCGTCGGA--CTCGT--TCGACGAGAATGCTCTTTGGGCCTTCTGGCGCCGCTTC----GCTACCTGCTTAAAACAACTTTGAGGA--GAG--TTGTCA----------------ATGAGTCAGAGTCACCTATTGGTAGCTACATTCACA-------------------------------------------------------------------------------------------------------------------------
#=GS CryGC7/1-275 DE JALPBX010000072.1:c46854-46580 Cryptococcus sp. GC_Crypt_7 iso00_79_72, whole genome shotgun sequence
CryGC7/1-275                ------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTAGTAAACCA-----------TCGCAGCCCCAATTCCCCA-TCAGTGCAAAGAG------CTCCGTCTCCC---TTTACTGGGAGA-----------------TGTGTG---GCTAC-AACGACCGA--GGGGGCCAGACAGGTCGCGTGGAACGA-----TCATAGCACGTCGAAAGACTTGAGGGTTGCGCTCGTCGGAAATTCGTTTTCAATGAGATTGCTCTTCAAGTCCTTGGGCGCTGTTTC----GCTACCTGCTTAAAACAACTTTGAGGA--GAG--TTGTCA----------------ATGAGTCAGAGTCACCTATTGGTAGCTACATTCTCC-------------------------------------------------------------------------------------------------------------------------
#=GS CrySki/1-291 DE BCHT01000007.1:346800-347090 Cryptococcus skinneri DNA, scaffold: scaffold_6, strain: JCM 9039, whole genome shotgun sequence
CrySki/1-291                --------------------------------------------------------------------------------------------------------------------------------------------------------------CTACATAACAG------ACGTCGC--AAATTCCCCG-TCGTAGCCCAGAG------CTCCCAGACAGCTTGTTTACAAGTCAA----------------TGGACGAA-GCTGCAACCGACC-TTC-GGGGCCAGACACGACGTTTTGATCTA----------------CCCACCCCTCAACCTCTTTTCATCGCCTTGCCTCGGGAGTTCAAACTTTCGTCGTGAGGGGATGGAGAGATTGAGGGGC-GCTACTTTCTTAAAACAACTTTGGCGA--GATCGGCTCGTTAGAGTCGATTG----AGGACTCTGAGTCACCTATTGGTAGCCACATTTTGTATCAGCTA-----------------------------------------------------------------------------------------------------------------
#=GS CryGC2/1-227 DE JALPCC010000139.1:c15381-15155 Cryptococcus sp. GC_Crypt_2 iso00_70_139, whole genome shotgun sequence
CryGC2/1-227                -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAG------TGCACCG---TCCACTCTCGAGTG--------------------ACGTGA--GCTAATA-CGCAAGC-AAGGGGCCAGACAGGACGTCTTGATCGAA--------TCACTACCTTGTATCTTTTCTCTCATATACCTCGGGCAACCGTCGTGTGGTGGGGGAAAAGGGGAAGGTGG----------------GCTACTCTC-TAAAACAACTTTGAAGA--GACCTTTTCATACGG-TCG--------ATGAGTTCTAGTCACCTATGAGTAGCGACATATTACTTC----------------------------------------------------------------------------------------------------------------------
#=GS VanFra/1-269 DE BEDY01000002.1:379140-379408 Vanrija fragicola DNA, scaffold: scaffold_2, strain: JCM 1530, whole genome shotgun sequence
VanFra/1-269                -------------------------------------------------------------------------------------------------------------------------------------------------TTAGATTTCTCAATCACAAAAATACCA---TCGCGACCCAAATTCCTCG-CTGGTGCT--GTG------TTCCCCAGGAAGGCTTGCCTTTCTG------------------CGTGTGA--GCTACCACCGCCGGCC--GAGGCCAGACAGGACGCGTCGAGCAT------------------CGCCCTTTTTTCTGTCCTTCTGGCCCCTTTACGGGGGTTGGGGGGGTGGGGGAGAGGTTG------------------GCTACTTTTTTAAAACAACTTTGATGA--GGCGTAT---GCCT-------------AGGACTCCGAGTCACCTACGAGTAGCTACAGTTTTTCTTC---------------------------------------------------------------------------------------------------------------------
#=GS BulAlb/1-308 DE CAMYTR010000046.1:c75507-75200 Bullera alba genome assembly, contig: jcf7180000012139, whole genome shotgun sequence
BulAlb/1-308                -------------------------------------------------------------------------------------------------------------------------------------------------C--CTCTTCTTCAACACATT-------------CAGCCCAAATTCCATG-TCAGTC-GTAGAG------CTCCTTCG------CCCCCGGGCG-------------------TTGTCGAT-GCTTTCCAAGACCGATCAT-GGCCAGACAGGTTGTTTCGAATAAA----CCCTCTCATTACCCCCCGTCGCGGACCAGCCTCGCCGCGCAAGCAGTGTCGTTGGAAAGTGATGGGGCGGTTGAGA---------------ACTGCTT-TTTAAAACAACTGTGCGGA--GGTCCTT----CGGAATCG--------AGGAGTCAGAGTCACCTATGAGCAGTAACACTAGCGAGCGAGATGCAACGTTTGTCAATGCTGGAGCTTTCTTTC----------------------------------------------------------------------------------
#=GS PapLau/1-308 DE JAAZPX010000034.1:18340-18647 Papiliotrema laurentii strain IF7SW-F4 scaffold63_cov202, whole genome shotgun sequence
PapLau/1-308                ------------------------------------------------------------------------------------------------------------------------------------CAAATTCCTCGACCAGTTTCCTCTTTTCACCCA----------TGGCACCCCAAATTCCCAC-TTTGTT--CAGAG------CTCCGTC--------TTTCGGGACG------------------TGCTTA---GCTCCA--AGACATCGCT-GGGCCAGACAGGTCGCCTCGAGTGAA---CATAGCGTTGGGCTTCTTT--GACTCCCCCCTCGCCGCAAGGCGTCGGGGGCTAGGTCATCGATGGTCCGACGTAG----------------GCTGTACGCTTAAAACAGCTTTGCGGA--GGTCTCGGAAACGGGATCT--------ATGAGTCAGAGTCACCTATGGACAGTCACACCAAAGACGTATAGCTCAAGGCTCGTCGTT-------------------------------------------------------------------------------------------------
#=GS KocImp/1-484 DE NBSH01000001.1:c1693543-1693060 Kockovaella imperatae strain NRRL Y-17943 BD324scaffold_1, whole genome shotgun sequence
KocImp/1-484                CCAGAAGCTCTCCTCGATCTCTTGCTCGTCAGATATATCTGTGTCTTCTGTAGACTGTAGTGAGTCTTTGAGCCTCATTGCACTCACTTTCCAGGAGAAAATCATCGAAATTATTAAATTTTCGGGCTGCAGTGCATTAAAAAGTTGGACCTGCCTGGGTTCATGAATCTC--TAGTTCGTCCCAAATTCCTCA-AGAATCCCTAGAG------CTCCAC---------TATCGCGAGACAAG--------------TGTGAT---GCTAC--ACGATTCTC--GGGGCCAGACAAGGCGACTTGATCGATCCTCGACCATTTCAGCTCATTTAATCCGGGCCTCGTCAATGTTTTCGCAACGTTGGCGTCGTTTGGAGAGTTTTTGGATTGGATTCACTCGAGGGGCTACTCGCTTAAAACAGCTTTGCGGAGGGCAGCGGGACTTCGGTACTTCTGCTCGATGAGTCAGAGTCACCTATGAGTAGCGACATCTCCCCATCTCATTCGACTAGACGTCTATG------------------------------------------------------------------------------------------------
#=GS TriCor/1-262 DE JXYL01000066.1:c15995-15734 Trichosporon coremiiforme strain JCM 2938 scaffold_0066, whole genome shotgun sequence
TriCor/1-262                -------------------------------------------------------------------------------ATTTCTGAGCCTCCACCAGCCGCGCTCCCAGCGCCCTATATAAGACGTAGACGCGAGA------TTTTCTTGACCTCAATCACAAAATTATTTTTCACCGCGTTCGAATTCCTTG-CTGGTGC--AGTG------CCCACTTCC------TTTCGGGGAAGG----------------TTTGCG---GCTCCA--CGACCAGC--GAGGCCAGACAAAGCGCGAAGACCGA-------------------------------------------------CGT---------------------------------------------CTACTTGCTTAAAACAACCTGGCTGA--GTG----CAAGCG--------------ATGACTCCGGGTCACCTATGAGTAGCGACATTTTTAT------------------------------------------------------------------------------------------------------------------------
#=GS ApiBra/1-257 DE JAMALJ010000019.1:197216-197472 Apiotrichum brassicae strain M2204 ctg_19, whole genome shotgun sequence
ApiBra/1-257                ------------------------------------------------------------------------------------------------CGCCTGTCCAGCTGCTCGGTATAAATACACT---CGCGAGA------TGCAGTTCTTTTCTTCTACAAACC------TATCGCGACTCAAATTCCTCT-CTGGCGTT--GAG------CTCCTATCGGG-TCCGCCCG-----------------------TGTGTGAC-GCTGCCACCGCAAGAC--GAGGCCAGACAAGACGCGTGGAGTAA----------------------------------------CGACACTTTTGTGTCGA---------------------------------------GCTACTCGATTAAAACAACTGGGATGA--GGTG---TAAGCCT-------------ATGACTCCGAGTCACCTATGAGAAGCTACATCTTGTATC----------------------------------------------------------------------------------------------------------------------
#=GS TriInk/1-290 DE QAYW01007761.1:1-290 Trichosporon inkin strain C-2155 NODE_7770_length_602_cov_1.89333_ID_244799, whole genome shotgun sequence
TriInk/1-290                ---------------------------------------------------------AAATAATGCAACGGCAACACAGAGCTTTCGCCCCCCTCCACCGCCTGCGCAGAGGGTGTATAAAAGTCGAACCGCGAGCCCGCTGTTGACTTTTCTTCAAATCACAAAAAATATT--CACCGCGTTCGAATTCCTTG-CTGGTGCTTTCCTAAGTG---CCCCCTC------GCTCGCGAG--------------------GCGTG---GCTTCA--CGATCAGC--GAGGCCAGACAAAGCGCGAAGACCGA-------------------------------------------------CGT---------------------------------------------CTACTTGATTAAAACAACCTTGACGA--GCCG---TAAGGTT-------------ATGACTCCGGGTCACCTATGAGTAGCGACATTTTCC-------------------------------------------------------------------------------------------------------------------------
#=GS TriOvo/1-274 DE JXYN01000015.1:c488967-488694 Trichosporon ovoides strain JCM 9940 scaffold_0015, whole genome shotgun sequence
TriOvo/1-274                ------------------------------------------------------------------TTCCTGAGTGCAACGGGGCGAAGCCCTCCACCGCACGCAGGCTGGGGTGTATAAAAGTTGGGCAGACGCGCAAGTTTGTGTTTTTCTTCAAATCACAAAA-TTATTT--ACCGCGTTCGAATTCCTTG-CTGGTGC-----AAAGTG---CCCCCTC-------CTCG-GAG--------------------GCGTG---GCTTCA--CGATCAGC--GAGGCCAGACAAAGCGCGAAGACCGA-------------------------------------------------CGT---------------------------------------------CTACTTGATTAAAACAACCTTGACGA--GCCG---TAAGGTT-------------ATGACTCCGGGTCACCTATGAGTAGCGACATTTCATA------------------------------------------------------------------------------------------------------------------------
#=GS TriAsa/1-274 DE SCGW01000101.1:21158-21431 MAG: Trichosporon asahii isolate N5_275_008G1 N5_275_008G1_scaffold_156, whole genome shotgun sequence
TriAsa/1-274                -------------------------------------------------------CTCGCACCAACTTTTTGCTGGACCTCCACCGGCCCCTCCCCCCGAC------------TATATAAAACAGACACAGCAGGAATGCAACA--------CTCA-ATCACAAAATTTAT--CCACCGCGTTCGAATTCCTTG-CTGGTGCT-TCTACAGTG---CCCCCTT----CTTTCTGAAGG--------------------TTGCG---GCTCCA--CGACCAGC--GAGGCCAGACAAAGCGCGAAGAACAAA------------------------------------------------CTT---------------------------------------------CTACTTGCTTAAAACAACCTGGCTGA--GTG---TCAAGCG--------------ATGACTCCGGGTCACCTATGAGTAGCGACATTTACATG-----------------------------------------------------------------------------------------------------------------------
#=GS TriGue/1-294 DE BCJX01000002.1:905348-905641 Trichosporon guehoae DNA, scaffold: scaffold_1, strain: JCM 10690, whole genome shotgun sequence
TriGue/1-294                --------------------------------------------------------------------------GGCTGCTGCTCGCTCGCACCCGTGCCCGCCCCGTCGCAAGGTATAAATGTCTGCGTTTCGATCCTTTCTTCTCTTTTCTTCAAATCACAAA-TTTTT--CATCGCTCCATTAATTCCTTT-CTCGTG-----TCGAGT----------------CCCTCGGGTTCGCCCGCA------------GCGCG---GCTAACACC-ACAAGA--GAGGCCAGACA-GGAGCGTCGAGCAA--------------------------------------------------GGCAGCAATGCCA---------------------------------GCTACTTGATTAAAACAACTTTGTTGA--GGTG---AAAGCCG-------------AGGACGCCGAGTCACCTACCGGTAGCTACATATCCGTTTCCAAGCGTGCGT----------------------------------------------------------------------------------------------------------
#=GS TreFuc/1-291 DE LBGW01001183.1:4902-5192 Tremella fuciformis strain tr26 contig1183, whole genome shotgun sequence
TreFuc/1-291                ----------------------------------------------------------------------------------------------------------TAATTCAGTCGCACCTCAAAACTCCTTTCAAGCCCATCTGATCTCTCTTCAATCACAAA----T--ACCATGGCGCCCGAATTCCTCG-TTGGATCGCTAGCACCGC---CCCCGCCCCGGCCAGCCGCAAGGAGGGC--AGGGGAG--GGGTCGTGA--GCTGCC-CCGACCTTC-AGAGGCCAGACAAGACGCCTCGAATGA---------------------------------------------CCATCAG--------------------------------------------GTCGCTTGATTAAAACAACTTCGTGGA--GCG----CTCGCA--------------ATGAGGCGGAGTCACCTATGAGCGACTACATACTACTTCATATACGACCAGCCTTGGCCCCT-----------------------------------------------------------------------------------------------
#=GS TreYok/1-301 DE BRDC01000022.1:706519-706819 Tremella yokohamensis NBRC 100148 DNA, KCNB35TY.22, whole genome shotgun sequence
TreYok/1-301                -----------------------------------------------------------------------------------------------------------------TCCGCACCTCAAAACTCCCCTCGAGCACCAATCCACTCTC-TCAATCACAAA----T--ACCATGGCGCCCGAATTCCTCG-TTGGATCGCTAGCACCGCCCCTTCACCCCTCGCCAGCCGCAAGGATGGCGAAGGGGAGAGGGGT-GTGAGAGCTGCC-CCGACCTTC-AGAGGCCAGACAAGACGCCTCGATTGA---------------------------------------------TCACCAG--------------------------------------------GTCGCTTGATTAAAACAACTTCGTG----GAG--CGCTCGCA--------------ATGAGGCGGAGTCACCTATGAGCGACTACATACTACTCAATGTACGACAGGGCATGCTGGGATCGCCACACT-------------------------------------------------------------------------------------
#=GS CutOle/1-281 DE QKWL01000003.1:c2711843-2711563 Cutaneotrichosporon oleaginosum strain ATCC 20508 ATCC20508_contig03, whole genome shotgun sequence
CutOle/1-281                ------------------------------------------------------------------CGCGGAGAAAACCAAAAGAATTGGACCCCAATTAATCCCTCGCTCCCCCCGCGAACCAAAAGTCTGACCGCCGCCGCATCTTTCTCTTTCAATCACAAATAATTT--CATCGCTCCATAAATTCCTTT-GCGCG---CTGAG--------CCCCTCGG-----CTTCGGCCTTGG--------------------CGAG-GCTACCACCGCGCAGC----GGCCAGACAGGA-GCGTCGAGCGA-------------------------------------------------CG---------------------------------------------GCTACTCGATTAAAACAACCTTGATGA--GGT-CTCACAGCCT-------------AGGACTCCGGGTCACCTATGAGCAGCTATATCTTTTCTTT---------------------------------------------------------------------------------------------------------------------
#=GS CutDas/1-279 DE BEDX01000010.1:404976-405254 Cutaneotrichosporon daszewskae DNA, scaffold: scaffold_10, strain: JCM_11166, whole genome shotgun sequence
CutDas/1-279                ------------------------------------------------------GGCCAGCGAGTCCCGGGATAAATCCAAATAAATGACGGCGGATAAACCCCCTCGCCCGCCTGCCGCATAAAAAGTCCAACCTTCCTCCG-------TTTCTCCATCACA------------TCGCGACCATAATTCCTCT----------CGAGTGCTGTG-----------CTCCCTTGCTTGCATG------------------GTGA--GCTGCCACCGCTGGAC--GAGGCCAGACAGGACGCGTCGAGCAA-------------------------------------------------CGTCTC-----------------------------------------GCTACTTGATTAAAACAACCTGGCTGA--GG---CGCGAGCCG-------------AGGACTCTGGGTCACCTATGAGTAGCTACATCTCAATATGC--------------------------------------------------------------------------------------------------------------------
//

• Image source 2.1, 10.1:

# STOCKHOLM 1.0
#=GF RW van Nues, September 2023
#=GF https://coalispr.codeberg.page/paper
Annot/1-13                       -----------------------------GTGrGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGA----------YAG---------------------------------------------------------------------------
#=GS intron-CNAG_06770/1-386 DE 2: [83,006 - 83,392] (+386)
intron-CNAG_06770/1-386          CAGATCGGCGGTGACGAGGAGAAGCCCTTGTGAGTATCTTATTCTGTTATTAAGTGCTTGGTCTTTTATTTTTTATTTTATTTTTTGGTTCCGCTACCTTT-TAAGACAGTGCCCGTCGCTCC---TCTCATGAG-TGTATGAGGCGATTCCGGTCA-GCGAAGATCGACC-----TTACATCACATTTAGAGCTTGCTTTCTC-TGCTCTTGAATGTCGCAGCATACGT---GT-TGCGAGCACCA-TTT-CCCGCATGCTG-GCCCCTTTTGGGCGGCAT-TGGG--ACGGTGTGAGTCGTGGGAAGGGAGGCGTCATATTGATGTTATATTACTTTTTCCCCTCGATTCAATTGTTATCTTCAAACAA---------------------------------TGCTGACTCGATTGATCAGGTACCTTGTCTTCCACGG---------------------------------------------------------
#=GS HACA-in-CNAG_06770/1-227 DE in CNAG_06770 Fructose-bisphosphate aldolase 2: [83,095 - 83,322] (+227) CP003821.1:83096-83322 Cryptococcus neoformans var. grubii H99 chromosome 2, complete sequence
HACA-in-CNAG_06770/1-227         -----------------------------------------------------------------------------------------TCCGCTACCTTT-TAAGACAGTGCCCGTCGCTCC---TCTCATGAG-TGTATGAGGCGATTCCGGTCA-GCGAAGATCGACC-----TTACATCACATTTAGAGCTTGCTTTCTC-TGCTCTTGAATGTCGCAGCATACGT---GT-TGCGAGCACCA-TTT-CCCGCATGCTG-GCCCCTTTTGGGCGGCAT-TGGG--ACGGTGTGAGTCGTGGGAAGGGAGGCGTCATATTGATGTTATATTACTT----------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS HACAcnag06770/1-226 DE HACA-snoRNA-in-CNB00300 Fructose-bisphosphate aldolase AE017342.1:83056-83281 Cryptococcus neoformans var. neoformans JEC21 chromosome 2 sequence intronic-HACAsnoRNA-225nt-in-Fructose-bisphosphate-aldolase-CNB00300 ncrna 2:83055:83280:1
HACAcnag06770/1-226              -----------------------------------------------------------------------------------------TCCGCTACCTCC--TAGACAGTGCCCGGCGCTCC---TCCCATGAG-TGTACGAGGCGATTCCGGTCA-GCGAAGATCGACG-----TCACATCACATTTAGAGCCTGCTTTCTC-TGCTCTTGAATGTCGCAGCATACGT---TT-TGCGAGCACCA-TTT-CCCGCATGCTG-GCCCCTTTTGGGCGGCAT-TGGG--ACGGTGTGAGTCGTGGGAAGGGAGGTGTCATATTGATGTTACATTACTT----------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS R265_4/1-225 DE CP025762.1:c1666936-1666712 Cryptococcus gattii VGII R265 chromosome 4
R265_4/1-225                     -----------------------------------------------------------------------------------------TCCGCTACCTCC--TAGACAGTGCCCGGCGCTC---TTCCCATGAG-TGTACGAGGCGATTCCGGTCA-GCGAAGATCGACG-----TTACATCACATTTAGAGCCTGCTTTCTC-TGCTCTTGAATGTCGCAGCATACTT---GT-TGCGAGCACCACTTT---CGCGTGCTG-GCCCCTTTTGGGCGGCCG-TGGG--ACGGTGCGAGTCGTGGGGAGGGAGGTGTCATATTGATGTTACATTATTT----------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS WM276_B/1-227 DE CP000287.1:c2094234-2094008 Cryptococcus gattii WM276 chromosome B, complete sequence
WM276_B/1-227                    -----------------------------------------------------------------------------------------TCCGCTACCTCC--TAGACAGTGCCCGGCGCTC---TTCCCATGAG-TGTACGAGGCGATTCCGGTCA-GCGAAGATCGACG-----TTACATCACATTTAGAGCCTGCCTTCTC-TGCTCTTGAATGTCGCAGCATACTT---GT-TGCGAGCACCACTTT-CT--CGTGCTG-GCCCCTTTTGGGCGGCCG-TGGG--ACGGTGCGAGTCGTGGGGAGGGAGGTGTCATATTGATGTTACAATTTTTTT--------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS CryAmy/1-234 DE MEKH01000012.1:c860912-860679 Cryptococcus amylolentus CBS 6273 supercont2.12, whole genome shotgun sequence
CryAmy/1-234                     --------------------------------------------------------------------------------------TTTCACGCATCCTTTT-TAGACAGTGCCCGGGTCTTC--TTTCAATAAG--GCTCG-GGCGATTCTGGACA-GCGAAGATTAAAG--CCTTTACATCACATTTAGAACTTGCTTTCCC-AACTCTTTGATGTCGTACCACCCTGGTGGTATGAGCGCTCA---TT-CTCTGCGGCTGGCTCACTTTTGAGCGGCCG-TGGA--GGGGCGTGAGTAGTGGGAAAGGAGGTGTCATATTGGTGTCACATTACT-----------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS CryWin/1-233 DE AWGH01000023.1:70143-70375 Cryptococcus wingfieldii CBS 7118 supercont1.23, whole genome shotgun sequence
CryWin/1-233                     --------------------------------------------------------------------------------------TTTCACGCATCCTTTT-TAGACAGTGCCCGGGTCTTC--TTTCAATAAG--GCTCG-GGCGATTCTGGACA-GCGAAGATCAATG--CCTTTACATCACATTTAGAACTTGCTCTCCC-AACTCTTTGATGTCGTACCACCCTGGTGGTATGAGCGCTCA---TT-CTCTGCGGCTGGCTCACT-TTGAGCGGCCG-TGGA--GGGGCGTGAGTAGTGGGAAAGGAGGTGTCATATTGGTGTCACATTACT-----------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS CryFlo/1-231 DE RRZH01000014.1:c128049-127819 Cryptococcus floricola strain DSM 27421 chromosome 13, whole genome shotgun sequence
CryFlo/1-231                     ----------------------------------------------------------------------------------------CCACGCATCCTTTT-TAGACAGTGCCCGGGTCTTC--TTTCAATAAG--GCTCG-GGCGATTCTGGACA-GCGAAGATTAAAG--CCTTTACATCACATTTAGAACTTGCTCTCCC-AACTCTTTGATGTCGTACCGCCCTGGTGGTATGAGCGCTCA---TT-CTCTGCGGCTGGCTCACT-TTGAGCGGCCG-TGGA--GGGGCGTGAGTAGTGGGAAAGGAGGTGTCATATTGGTGTCACATTACT-----------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS KwoHev/1-234 DE ASQC01000161.1:30900-31133 Kwoniella heveanensis CBS 569 cont2.161, whole genome shotgun sequence
KwoHev/1-234                     ---------------------------------------------------------------------------------------CGCACGCTACCCAAA-TAGACAGTGCCCGGCTCTCC---TTCAATGAG-ACGTCGAGGCGAT-CCGGTCA-GCGAAGATCAATGTACCTATACATCACATTTAGAGCTTGCTTCCTC-TACCCTTCAATGTTGTCTCGGGGGACCGAGATAAGCGCCTC---TC-TCCGTTTGTTGGCTC-CTTCTGAGCGGCTG-CGGC---TGGCGTGGGTCGTGGGGAAGGAGGTGTCATATTGATGTCACATCTAGC----------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS KwoMan/1-233 DE ASQF01000042.1:147950-148182 Kwoniella mangroviensis CBS 8886 cont1.42, whole genome shotgun sequence
KwoMan/1-233                     ---------------------------------------------------------------------------------------CCCACGCTACCCAAA-TAGACAGTGCCCGGATTTCCA---TCAATGAG-ATACCGAGGCGAT-CCGGTCA-GCGAAGAAGAATGA-TTTATACATCACATTTAGAGCTTGCTTTCTC-TACCCTTTAATGTCATTGCACCGTAGTGCAATGAGTGCTCAAAGTTA-----TCTACTGGCTCCTTTTGAGCGGTGT-TAGCA--GAGTGCGGGTCGTGGGGAAGGAGGTGTCATATTGATGTCACATCCCG-----------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS KwoSha/1-231 DE NQVO01000056.1:79349-79579 Kwoniella shandongensis strain CBS 12478 scaffold00056, whole genome shotgun sequence
KwoSha/1-231                     -----------------------------------------------------------------------------------------CCCGCTACCCAACATAGACAGTGCCCGGCTCTCC---TTCAATGAG-ATGTCGAGGCGAT-CAGGTCA-GCGCAGAGTAATGTTTTACCACACCACATTTAGAGCCTGCTTCTTC-TACCCTTTAATGTCGTTTCAGTTTGTTCTGGTGCGAGCACTGTACC----CCACGACTGTCTCCTTTTGAGAGGTCG-TGGA---AGGTGTGGGCCGTGGGGAAGGAGGTGTCATATTGGTGTCACATCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS WM276_I/1-234 DE CP000294.1:710681-710919 Cryptococcus gattii WM276 chromosome I, complete sequence
WM276_I/1-234                    -----------------------------------------------------------------------------------------ACCGCTACCTA--CAAGACAGTGCCCGATGCTCC---TTCCATGAG-TAATCG-GGCGATTCCGGTTAAGCGAAGAAGAACG-----TTACATCACATTTAGAGCCTGCTTCCTC-TACTCTTCAATGTCGCTACATACGT---GTATGCGAGCGCCAATTTACTCATGTGCTGAGCCCCTTTTGGGCGGCCA-TGGGTG-CGGTGTGAGTGGTGGGGAGGGAGGTGTCATATTGATGTCATATTCCTATCT-------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS from-CNAG_12895/1-230 DE HACAsnoRNA CP003829.1:c297366-297137 Cryptococcus neoformans var. grubii H99 chromosome 10, complete sequence
from-CNAG_12895/1-230            -----------------------------------------------------------------------------------------ACCGCTACCTA--CAAGACAGTGCCCGATGCTCC---TTTCATGAG-TAATCG-GGCGATTCCGGTTAAGCGAAGAAGAACG-----TTACATCACATTTAGAGCCTGCTTCCTC-TACTCTTCAATGTCGCTACATACGT---GTATGCGAGCGCCAATTTATTCATGTGCTGAGCCCCTTTTGGGCGGCCA-TGGGTG-CGGTGCGAGTAGTGGGGAGGGAGGTGTCATATTGATGTCATATTCCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS R265_9/1-230 DE CP025767.1:693895-694124 Cryptococcus gattii VGII R265 chromosome 9, complete sequence
R265_9/1-230                     -----------------------------------------------------------------------------------------ACCGCTACCTA--CAAGACAGTGCCCGATGCTCC---TTCCATGAG-TAATTG-GGCGATTCCGGTTAAGCGAAGAAGAACG-----TTACATCACATTTAGAGCCTGCTTCCTC-TACTCTTCAATGTCGCTACATACAT---GTATGCGAGCGCCAATTTACTCATGTGCTGAGCCCCTTTTGGGCGGCCA-TGGGTG-TGGTGTGAGTGGTGGGGAGGGAGGTGTCATATTGATGTCATATTCCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS HACAcnag12895/1-230 DE AE017350.1:735190-735419 Cryptococcus neoformans var. neoformans JEC21 chromosome 10 sequence
HACAcnag12895/1-230              -----------------------------------------------------------------------------------------ACCGCTACCTA--CAAGACAGTGCCCGGTACTCC---TTTAATGAG-TAATCG-GGCGATTCCGGTTAAGCGAAAAAGAACG-----TTACATCACATTTAGAGCCTGCTTCCTC-TACTCTTCAATGTCGCTACATACGT---GTATGCGAGCGCCAATTTACTCATGTGCTGAGCCCCTTTTGGGCGGCCA-TGGGTG-CGGTGCGAGTAGTGGGGAGGGAGGTGTCATATTGATGTCATATCCCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS CryVH5/1-250 DE JANBXI010000003.1:c281499-281250 Cryptococcus sp. VH57_BW 3, whole genome shotgun sequence
CryVH5/1-250                     ----------------------------------------------------------------------------------CCCCCAACCCGCTACCCAAA-TAGACAGTGCCCGCACTTCC---TTCCATGAAGTAG-CGAGGCGAT-CCGGTCA-GCGCATATAGACG---TCCCACACCACATTTAGAGCCTGCTTCTTC-AACTCTTGAATGTCGTTTCACTTTACTGTGCTGCGAGCGCC---GTTGCCAGAGGCT-GCCTCACTTTGAGGGGCCGACGGA----GGTGCGAGTCGTGGAGAAGGAGGTGTCATATTGGTGTTACATTCCATGATCTTTTATATA---------------------------------------------------------------------------------------------------------------------------------------------------
#=GS KwoBes/1-244 DE ASCK01000039.1:804694-804937 Kwoniella bestiolae CBS 10118 cont1.38, whole genome shotgun sequence
KwoBes/1-244                     ------------------------------------------------------------------------------------CCCTCCACGCTACCCAAA-TAGACAGTGCCCAGATCTCCA---TCAATGAGATA-CTGAGGCGAT-CCGGTCA-GCGAAGAAAAATGTTCTTTTACATCACATTTAGAGCTTGCTTCCTC-TACCCTTTAATGTCG--TTGTGCTACCGTACAACGAGCACTCAAG-GTTAT-CTACT-GGCTCCTTTTGAGCGGTTC-TAGCAG--GGTGTGGGTCGTGGGGAAGGAGGTGTCATATTGATGTCACATCACGTCCTTGT----------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS KwoDej/1-239 DE ASCJ01000025.1:1568564-1568802 Kwoniella dejecticola CBS 10117 cont1.25, whole genome shotgun sequence
KwoDej/1-239                     ---------------------------------------------------------------------------------------CCCACGCTACCCAAA-TAGACAGTGCCCTGATCTCC---TTCAATGAGATA-CTGAGGCGAT-CCGGTCA-GCGAAGAACAACGCC--TTTACATCACATTTAGAGCTTATTTCCTCTTACCCTTCAATGTCG--GTGCGCGAGAGTGCACCGAGTGCTCAAC-GTTTC-CTACT-GGCTCCTTTTGAGCGGTGT-TAGCAG--GGTACGGGTCGTGGGGAAACGAGTGTCATATTGATGTCACATCCACATCTCT-----------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS CryGC7/1-237 DE JALPBX010000099.1:c55020-54784 Cryptococcus sp. GC_Crypt_7 iso00_79_99, whole genome shotgun sequence
CryGC7/1-237                     --------------------------------------------------------------------------------------ATTCCCGCTACCCAAA-TAGACAGTGCCCGCACTTCC---TTCAATGAAGTAA-CGAGGCGAT-CCGGTCA-GCGCATATAAATATC--TTTCCACCACATTTAGAGCTTGCTTCTTC-TACCCTTTGATGTCGCTTCGTTGGTCCGAAGCGAGCGC-CTAAAG-TC-TA--TGCT-GGCTCCTTTTGAGCGGCTG-TGAC---CGGCGTGGGCCGTGGAGAAGGAGGTGTCATATTGGTGTGACATACCAACGTGT-----------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS CryGC3/1-239 DE JALPCB010000055.1:c21448-21210 Cryptococcus sp. GC_Crypt_3 iso00_45_55, whole genome shotgun sequence
CryGC3/1-239                     ---------------------------------------------------------------------------------------ATCCCGCTACCCAAA-TAGACAGTGCCCGCACTTCC---TTCAATGAAGTAA-CGAGGCGAT-CCGGTCA-GCGCATATAAAATATTTTTTCCACCACATTTAGAACTTGCTTCTTC-TACCCTTTGATGTCGCTTCGTTAGTCCGAAGCGAGCGC-CTCATG-TCGCA--TGCT-GGCTCACTTTGAGCGGCTG-TGAC---TGGCGTGGGCCGTGGAGAGGGAGGTGTCATATTGGTGTGACATACCGACGTGT-----------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS CryGC5/1-236 DE JALPBZ010000043.1:c54478-54243 Cryptococcus sp. GC_Crypt_5 iso00_58_43, whole genome shotgun sequence
CryGC5/1-236                     ----------------------------------------------------------------------------------------CCCCGCTACCCAAA-TAGACAGTGCCCGCACTTCC---TTCAATGAAGTAA-CGAGGCGAT-CCGGTCA-GCGTATATAAATA--TTTTTCCACCACATTTAGAACTTGCTTCTTC-TACCCTTTGATGTCGCTTCGTTAGTCCGAAGTGAGCGC-CTCATG-TCGCA--TGCT-GGCTCACTTTGAGCGGCTG-TGAC---TGGCGTGGGCCGTGGAGAGGGAGGTGTCATATTGGTGTGACATACCGACGTGT-----------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS TriInk/1-228 DE QAYW01011325.1:278-505 Trichosporon inkin strain C-2155 NODE_11339_length_526_cov_2.20935_ID_251937, whole genome shotgun sequence
TriInk/1-228                     -----------------------------------------------------------------------------------------ACCGCTACCCAAA-TAGACAGTGCCGTCTGTTCC---TTCCATGAA--CATGGCGGCGAT-CCGGTCA-GCGAAGATTGAA-----CAACCATCTCATTTAGAGCCTGCTTGCTC-TACCCTTGAATGCCTCTGGTTACGGCCAGGGGGCG----CCAATG-ACTAA-GTGCC-AGCTCCTTTTGAGTGGTAACTGGGCGCCGGCGTGGGTCGTGGGCGAGGAGGTGTCATAGAGGTGTTACATATGTT----------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS TriOvo/1-230 DE WEIQ01000027.1:c426162-425924 Trichosporon ovoides strain 2NF903A scaffold27-size628911, whole genome shotgun sequence
TriOvo/1-230                     --------------------------------------------------------------------------------------GTTACCGCTACCCAAA-TAGACAGTGCCGCCTGTTCC---TTCCATGAA--CACGGCGGCGAT-CCGGTCA-GCGAAGATTGAA-----CAACCATCTCATTTAGAGCCTGCTTGCTC-TACCCTTGAATGCCCGCAGCCACGGCTGCGGGGCG----CCACAG-CATAA-GTGCC-AGCTCCTTTTGAGTGGTAACTGGGCGCCGGCGTGGGTCGTGGGCGAGGAGGTGTCATAGAGGTGTTACATACGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS TriOvo/1-228 DE JXYN01000003.1:c2783645-2783418 Trichosporon ovoides strain JCM 9940 scaffold_0003, whole genome shotgun sequence
TriOvo/1-228                     ----------------------------------------------------------------------------------------CACCGCTACCCAAA-TAGACAGTGCCGTCTGTTCC---TTCCATGAA--CATGGCGGCGAT-CCGGTCA-GCGAAGATTGAA-----CAACCATCTCATTTAGAGCCTGCTTGCTC-TACCCTTGAATGCCCCTGGTCACGGCCAGGGGGCG----CCAATG-ACTAA-GTGCC-AGCTCCTTCTGAGTGGTAACTGGGCGCCGGCGTGGGTCGTGGGCGAGGAGGTGTCATAGAGGTGTTACATATGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS TriCor/1-239 DE JXYL01000026.1:c69438-69200 Trichosporon coremiiforme strain JCM 2938 scaffold_0026, whole genome shotgun sequence
TriCor/1-239                     ---------------------------------------------------------------------------------------TTCACGCTACCCAAA-TAGACAGTGCCGTCTGCTCC---TTCCATGAGCATG--GCGGCGAT-CCGGTCA-GCGAAGATTGAACAA-----CCATCACATTTAGAGCCTGCTTGCTC-TACCCTTCAATGCCCCCAGCTACGGCTGGGGGGCG----TCACAG-TCTAA-GTGCC-AGCTCCTTTTGAGTGGTAACTGGGCGCCGGCGCGGGTTGTGGGCGAGGAGGTGTCATAGTGGTGTTACATACGTTCAATGCATT-------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS TriAsa/1-235 DE SCGW01000739.1:11880-12114 MAG: Trichosporon asahii isolate N5_275_008G1 N5_275_008G1_scaffold_1030, whole genome shotgun sequence
TriAsa/1-235                     ---------------------------------------------------------------------------------------TACACGCTACCCAAA-TAGACAGTGCCGTCTGCTCC---TTCCATGAGCATG--GCGGCGAT-CCGGTCA-GCGAAGATTGAACAA-----CCATCACATTTAGAGCCTGCTTGCTC-TACCCTTCAATGCCTCCAGCCACGGCTGGGGGGCG----TCACAG-TCTAA-GTGCC-AGCTCCTTTTGAGTGGTAACTGGGCGCCGGCGCGGGTTGTGGGCGAGGAGGTGTCATAGTGGTGTTACATACGTTCAATG-----------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS TriAsa-a/1-235 DE ALBS01000336.1:63-297 Trichosporon asahii var. asahii CBS 2479 contig0335, whole genome shotgun sequence
TriAsa-a/1-235                   ---------------------------------------------------------------------------------------TACACGCTACCCAAA-TAGACAGTGCCGTCTGCTCC---TTCCATGAGCATG--GCGGCGAT-CCGGTCA-GCGAAGATTGAACAA-----CCATCACATTTAGAGCCTGCTTGCTC-TACCCTTCAATGCCTCCAGCCACGGCTGGGGGGCG----TCACAG-TCTAA-GTGCC-AGCTCCTTTTGAGTGGTAACTGGGCGCCGGCGCGGGTTGTGGGCGAGGAGGTGTCATAGTGGTGTTACATACGTTCAATG-----------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS TriAsa-b/1-235 DE ALBS01000336.1:3872-4106 Trichosporon asahii var. asahii CBS 2479 contig0335, whole genome shotgun sequence
TriAsa-b/1-235                   ---------------------------------------------------------------------------------------TACACGCTACCCAAA-TAGACAGTGCCGTCTGCTCC---TTCCATGAGCATG--GCGGCGAT-CCGGTCA-GCGAAGATTGAACAA-----CCATCACATTTAGAGCCTGCTTGCTC-TACCCTTCAATGCCTCCAGCCACGGCTGGGGGGCG----TCACAG-TCTAA-GTGCC-AGCTCCTTTTGAGTGGTAACTGGGCGCCGGCGCGGGTTGTGGGCGAGGAGGTGTCATAGTGGTGTTACATACGTTCAATG-----------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS TriInk-b/1-233 DE QAEE01008206.1:1-233 Trichosporon inkin strain ATCC 18020 NODE_8323_length_758_cov_3.54772_ID_93358, whole genome shotgun sequence
TriInk-b/1-233                   ------------------------------------------------------------------------------------------ACGCTACCCAAA-TAGACAGTGCCGTCTGTTCC---TTCCATGAACATG--GCGGCGAT-CCGGTCA-GCGAAGATTGAACAA-----CCATCTCATTTAGAGCCTGCTTGCTC-TGCCCTTGAATGCCCGCCGCCACGGCGGCGGGGCG----TCACAG-CACAA-GTGCC-AGCTCCTTCTGAGTGGTAACTGGGCGCCGGCGCGGGTCGTGGGCGAGGAGGTGTCATAGAGGTGTAACATGCTATCGATGC----------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS VanFra/1-235 DE BEDY01000010.1:599225-599459 Vanrija fragicola DNA, scaffold: scaffold_10, strain: JCM 1530, whole genome shotgun sequence
VanFra/1-235                     ---------------------------------------------------------------------------------------CCACCGCTACCCAAA-TAGACAGTGCCGCCTTCTCC---TTCCATGAGAATTG-GCGGCGAT-CCGGTCA-GCGAACAGCAAATCCA----GCATCACATTTAGAACTTGCTCGCCC-TTCCCTTCAATGCCGCCGGCCTC---CGGGGCGGTGGGCG--CCGACTCCCTTTGCT-GGCTCCTTCTGAGCAGCG---AAATGTCGGTGTGGGTAGTGGGTGAGGAGGTGTCATATTGGTGCTACATTATCCCATTC-----------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS TriGue/1-227 DE BCJX01000015.1:123265-123491 Trichosporon guehoae DNA, scaffold: scaffold_14, strain: JCM 10690, whole genome shotgun sequence
TriGue/1-227                     --------------------------------------------------------------------------------------CCCACCGCAACCCAAA-TAGACAGTGCCGTCTCCTC---TTTCCATGAGGATG--GCGGCGAT-CCGGTCT-GCGAACATCACCC------TACATCGCATTTAGAGCCTGCTCACCCGTTCCCTTGAATGCCGCTGGTACGCCAGTGGGCGCCGATCGG------------CTGCTGGCTCCTTTAGAGCAG----TAGTTGCCGGTGCGGGTCGTGGGCGAGGAGGTGTCATATCGATGTGACATCCAATCACGA-----------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS CrySki/1-231 DE BCHT01000011.1:315919-316149 Cryptococcus skinneri DNA, scaffold: scaffold_10, strain: JCM 9039, whole genome shotgun sequence
CrySki/1-231                     -----------------------------------------------------------------------------------------CCCGCTACCCACC-TAGACAGTGCCCTTCCCTTA---TTCAATGAGG-CGTTGAGGCGATTCCGGTCA-GCGAAGATGAAA--CCCCAAACACCACATTTAGAGCCTGCTTCCTC-AATCCTTGAATGTCGTTCCTGTTTCGACGGTCGCGAGCGC--TTTCACCCGGCTTTT-CGCCCCTTTTGGGCAGGGTCGGGC----GGCGCGGATAGTGGGGAAGGAGGTGTCATATTGGTTTTACATGTG------------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS SaiPod/1-302 DE RSCD01000001.1:c1991040-1990739 Saitozyma podzolica strain DSM 27192 scaffold_1, whole genome shotgun sequence
SaiPod/1-302                     ---------------------------------------------------------------------------------------TCCCCGCTACCCATA-TAGACAGTGCCCGGCCCTC---TTTCGATGAGG--GTTGAGGCGAT-CCGGTCA-GCGTATATCAAC-------CACAACACAT-TAGAGCCTGCTTCTTCTTTCCGCTTTCAGCGGTCGCGCATCGC--------------------------AACCC--ACCCTTTCTGGGCAGGAGCTTTGCGCATTTC-----TGTGGAGAAGGAGGTGTCAAAGTGGTGTGACATGATTCATCCTCCCCACTGCGTGCTTTGAAAAGCCGTGCACGGGTCGCCGATTTTGGGAGTCGCG---------CTAACGACGCAAC-CAGGTTCCTTGTCTTCCACGGTGGATCC--------------------------------------------------
#=GS TreFuc/1-350 DE BRDD01000079.1:c29651-29302 Tremella fuciformis NBRC 9317 DNA, KCNB80TF.79, whole genome shotgun sequence
TreFuc/1-350                     -----------------------------------------------------------------------------------------ACCGCTACCCATA-T-GACAGTGCCCGGCCGTC---TTTCAATGATGATCCG-CGGCGAT-TCGGTCA-GCGCATACGAAA----CTCCACGCCATTTTTAGAACTTGCTTTTCCGTCCCTTTGA-TGCCCTCGTCCATGTGGCGGGAGGCG--------TTCGTGCGGCGCTGGACCCCTTTTGGGTCGG-----CGCCCCGGACGTGGGCGTGGAAGAGGAGGTGACAGAGTGGCGTGACATCTCATCGAGCAGCATCATTGTATAGTGTCGCACGGCGAGGGCAG---------------------------TGCTGACTCG------TAGTTTCCTCGTCTTCCACGGTGGATCCGGCTCGACTAAAGAGGAAATCGCGACCGCCGTTACCAACGGTGTGGTCAA
#=GS TreYok/1-261 DE BRDC01000028.1:c709968-709708 Tremella yokohamensis NBRC 100148 DNA, KCNB35TY.28, whole genome shotgun sequence
TreYok/1-261                     ----------------------------------------------------------------------------------------CACCGCTACCCATA-T-GACAGTGCCCGGCCGTC---TTTCAATGATGATCCG-CGGCGAT-TCGGTCA-GCGCATACGAAA----CTCCACGCCATTTTTAGAACTTGCTTTTCCGTCCCTTTGA-TGCCCTCGTCCATGTGGCGGGAGGCG--------TTCGTGCGGCGCTGGACCCCTTTTGGGTCGG-----TGCCCCGGACGTGGGCGTGGAAGAGGAGGTGACAGAGTGGCGTGACATCTCATCGAGCAGCATCATTGTGTAGT--CGCACGGCGAGGGCAG-------------------------------------------------------------------------------------------------------------------------
#=GS TreMes/1-281 DE SDIL01000024.1:c134576-134275 Tremella mesenterica strain ATCC 28783 supercont1.24, whole genome shotgun sequence
TreMes/1-281                     ---------------------------------------------------------------------------------------CACCCGCTACCCATA-T-GACAGTGCCCGGTGTTCC----TATATGAGCAACCG-AGGCGAT-CCGGTCA-GCGAAGAATCAA--CTCCACACACGGCATTTAGAACTTGCTTTTCCTTTCCGTT---CGCC-TCATCTTGATCGGTGGGGGCG---------TCTTGTCCCTCTGAGCCCCT-TTGGGCTGG----TTGGACGAGACGTGGACGTGGCAAAGGAGGTGACAGAGCCTTGTGACATTTTGTATACTCTCTGATCCTTTACATCATTCCCGTTTTCAACTTACTTCTATCTCCATTCCGTA-----------------------------------------------------------------------------------------------------
#=GS VanFra-b/1-227 DE BEDY01000001.1:c3908459-3908233 Vanrija fragicola DNA, scaffold: scaffold_1, strain: JCM 1530, whole genome shotgun sequence
VanFra-b/1-227                   -----------------------------------------------------------------------------------------CCCGCTACCCAAA-TAGACAGTGCCGATACCCC---TTTCCATGGGGCTTC--AGGCGAT-CCGGTCA-GCGAACATCCAC-------TGCATCACATTTAGAACTTGCTCGCCCTGCCTTTT---CGGC--AGTCAAGGCTGCT--GGGCG--------CCTTTCCCCTCGCTGGCTCCTTTTGAGCAGCGTGGTTGGCGTGG------CGGTGGGTGAGGAGGTGTCATATTGGTGCTACATTCTTTCACAATATATAATC--------------------------------------------------------------------------------------------------------------------------------------------------
#=GS CryGC2/1-270 DE JALPCC010000034.1:180671-180940 Cryptococcus sp. GC_Crypt_2 iso00_70_34, whole genome shotgun sequence
CryGC2/1-270                     -----------------------------------------------------------------------------------------CCCGCTATCTTCTATAGACAGTGCCCTTCCCTCC---TTCAATGAGGTTGTTGTGGCGATTCCGATA--GCGCAGATCAACA-----TCTTCATCATTTTAGAACTTGCTCTTTCGCCCTTTCC----AATCCCCTTATCCGGGATTGGGCA--------CCGTTAT-CTCGTTGACTCCTTTTGAGTGACGATGATCTGGTGTGGCT----ATGAGAGAGGAAGTGTCAAATTGATGTGACATCCTATTTCATTAACGTCTTGTTTCCATTTTCTTCACGTCATCAAGTGAGAGGA----------------------------------------------------------------------------------------------------------------
#=GS PapLau/1-252 DE JAAZPX010000029.1:c249951-249700 Papiliotrema laurentii strain IF7SW-F4 scaffold52_cov208, whole genome shotgun sequence
PapLau/1-252                     -----------------------------------------------------------------------------------------TCCGCTACCCAAA-TAGACAGTGCCTCGATCTC--TTTTCAGTGAGATA-CGACGGCGAT-CCGGTCA-GCGAAGATCTAAA-------AGCTCCACGTTAGAGCCTGCTTTTTCTTGCTTTTT----------------------------------------------TTGTCCCTCGTCCCGAGTGTGTCAATTCTAGTACCT------GTGGAGAAGGAGGTGTCGAAGTGGGGCGACATATTTTCAGTATATA--------------------GCTCTCGTGTCTTTGCTTTGGTCTCCCCCGATCG--ATGCTGACAT-----GACAGCTACCTCGTC-----------------------------------------------------------------
#=GS CryFla/1-272 DE CAUG01000058.1:12339-12610 Cryptococcus flavescens NRRL Y-50378 WGS project CAUG00000000 data, contig NODE_79_length_36599_cov_43_856853, whole genome shotgun sequence
CryFla/1-272                     -----------------------------------------------------------------------------------------TCCGCTACCCACA-TAGACAGTGCCTCGACCCC--TTTACAGTGGGGTA-CGACGGCGAT-CCGGTCA-GCGAATATCGAA--------CGCAACACGTTAGAGCCTGCTTTTTCTTTGCCTTT---------------------------------------------ACAGCCCCTCGTTCCGAGTGTGGCTGTCTCGGACACTT-----GTGGAGAAGGAGGTGTCGAAGTGGCGCAACATCCATTATCACACCCCTTTCTTATGTGTGCCTTGTCATTCGCGGTCGTGTCGTGTGTACCTAGTAGGCGCGACGCTGACG-------GCAGCTACCTTGT------------------------------------------------------------------
#=GS PapTer/1-261 DE JAHXHD010001265.1:c2197-1937 Papiliotrema terrestris strain LS28 scaffold-1264, whole genome shotgun sequence
PapTer/1-261                     -----------------------------------------------------------------------------------------CCCGCTACCCACA-TAGACAGTGCCTCGACCTC---TTTCAGTGGGGTA-CGACGGCGAT-CCGGTCA-GCGAATATCAAA--------CGCAACACGTTAGAGCCTGCTTTTTCTTTGCCTTT---------------------------------------------ACAGCCCCTCGTTCCGAGTGCGGCTGTTTCGGACACTT-----GTGGAGAAGGAGGTGTCGAAGTGGCGCAACATCCTTA-----------CCCTTTTCGTCCTGAATCATCTTGCTGTCATGTCGTGTTTGTCTAGTCGACACGGCGCTGACGG-------CAGCTACCTCGTC-----------------------------------------------------------------
#=GS BulAlb/1-197 DE BCIX01000004.1:253279-253557 Bulleromyces albus DNA, scaffold: scaffold_3, strain: JCM 2954, whole genome shotgun sequence
BulAlb/1-197                     ----------------------------------------------------------------------------------------CACCGCTACCCACA-TAGACAGTGCCCTATTCTCC--TTTCAATGAGAACATAGAGGCGAT-CCGGTCA-GCGCATATGGAAC-----CAAGGCACATGTTAGAGCTTGCTTTTCCTATACTTTT------------------------------------------ACCACATCTCCTCATTCTGAGGTAGACGGTTTTGGTCTTTT----CGTGGAAAAGGAGGTGTCGAATTGTGGCTACAGACTTGTCA-------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS KocImp/1-261 DE NBSH01000002.1:c266747-266487 Kockovaella imperatae strain NRRL Y-17943 BD324scaffold_2, whole genome shotgun sequence
KocImp/1-261                     ---------------------------------------------------------------------------------------ACCCCGCTCCCTCGCTTAGACAGTGCCCGGTTGCTCCTCAATCATGAGAATC--GGTGCGAT-CCAGAGA-GCGTAGATAGACA------TCCCATCACCTTAGAGCCTGCTTCTTCTGCTTCACC---------------------------------------CAGCTTCATTCTGAAAGTCTTGCGGAGAGGTCGTT-------------CGTGGAGGAGGAGGTGTCAAAGTGATGAGACATGACTGCAGAAAAT------------------------------------------CATGACGGTAGGCTCAAGCTGATGCCTCGCAACAGTTTCCTCGTCTTCCACGGAGGATCCGGAT----------------------------------------------
#=GS TreTag/1-267 DE CAJHEQ010000707.1:c3035-2769 MAG: Tremellales sp. Tagirdzhanova-0007 genome assembly, contig: TREM_707, whole genome shotgun sequence
TreTag/1-267                     -----------------------------------------------------------------------------------------TCCGCTACCCATA-TAGACAGTGCCCCGCTCTTCAA--TCCATGAGTGCT--GGGGCGAT-CCGGTCA-GCGCATATCGAC-------GCATCACCTTTTAGAGCTTGCTTCTCCTTACGTT-------------------------------------------CGGCGTGGGCACCCTTTCTGGACTGCCGTGCCGTGCTAC-------CGTGGAGAAGGAGGTGTCAAAGTGCTGCTACAAACCATGACTCAAATGCGACTCGTCGAAAGCATTTCAGTGCG-------------------TAGAGGAGTGAGACTGATGCA---GTATAGCTTCCTCGTCTTCCACGGT--------------------------------------------------------
#=GS NaeEnc/1-166 DE MCFC01000108.1:37130-37409 Naematelia encephala strain 68-887.2 BCR39scaffold_108, whole genome shotgun sequence
NaeEnc/1-166                     -----------------------------------------------------------------------------------------CCCGCTACCCATA-TAGACAGTGCCCTCTCCTCC--TTTCCATGAGGTC--TGAGGCGAT-CCGGTCA-GCGCAGAGTATCCA----TTGCACCATTTTTAGAGCCTGCTTTCTCTTTGTCCTA-------------------------------------------------------TTCTTGGAT-TTCA-------------------GTGGGGGAGGGGGTGTCAAACTGTTGCAACATGCAGAAAC-------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS NaeAur/1-253 DE JAKFAO010000001.1:2209049-2209301 Naematelia aurantialba strain NX-20 Contig1, whole genome shotgun sequence
NaeAur/1-253                     -----------------------------------------------------------------------------------------TCCGCTACCCACA-TAGACAGTGCCTTCTCCTCC--TTTCCATGAGGTC--TGAGGCGAT-CCGGTCA-GCGCAGAATA-CCA----TTGCACCA-TTTTAGAGCCTGCTTTCTCTTCGTCCTG-------------------------------------------------------TTCTTGGATATTCA-------------------GTGGGGGAGGGGGTGTCAAACTGTTGCTACATTACCATATA----------------------------------------------------------------CTGACCTCAACTCTCAGCTACCTCGTCTTCCACGGTGGCTCGGGCTCGTCCAAGGAAGAGATCCGCGAGGCGGTTGTCAACGGTGTC-----
//

• Image source 2.2, 2.3:

# STOCKHOLM 1.0
#=GF RW van Nues, September 2023
#=GF https://coalispr.codeberg.page/paper
#=GS HACAcnag03904-1_from-CNB03930/1-169 DE processed-exonic-HACAsnoRNA-169nt-in-3utrCNB03930-169nt ncrna 2:1157356-1157525
HACAcnag03904-1_from-CNB03930/1-169         -----------------------------------------------------------------------------CTTGCTTAGTGGCCTA--CATTTCGTCTTCACCCATA--TGTGGTGTAGGGGATCGGTGTCACTCGAGCATAGACCGATGCT-------TCTTTGAAGCTTCCGACGTTCATTTGCTATCTTTCCGAGGCGCA--AGCCA-CTTCCACGGGAACGATACTTCACAGGCGCCGGATATCATTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS WM276/1-567 DE CP000286.1:451312-451878 Cryptococcus gattii WM276 chromosome A, complete sequence
WM276/1-567                                 -----------------------------------------------------------------------------CTTGCTTAGTGACCTA--TATTTCGTCTTCACCCAT----GTGGTGTAGGGGATTGGTGTCACTCGAGCATAGAACGATGCT-------TCTATGAAGCTTCCGACGTTCATTTGCTATCCTCCTGAGGCGCA--AGCCA-CTTTTACAGGAACGGTACTTCACAGGCGCCGGATATCTTTTTTTTTCCTTCCTTGGGAACTGTACAAGATCTCGACACCAAGGCAGGGCGGTCAGTTGGCGTAAGGCGAGTGGACGTTTTGCCGTGTTGTCGAGCTGTTGTTTCATCTTATATATTC---CAAAGGTGCTTAACACTCTGCGAGCGATGATT--ACCTAAATCGTCTTGCTATTTTAGGAA-CACCGAGATTGTCGCTGGCGGCCTCCAAA--TGCTCAGGAGTGT----------------------------------CTTGCCCCCATTGTTACTCACCGG-CGCGGAAAA-----CTGAAG--TAGCTGGTCTAT--GCAGTGGGTACATATTAT--TATTGTGTAATTATATACTTTCATACATTGTTTTGATCTTGCGAGAATTTAAATT-CGATTATATGTATGTTATCATTTTATGCTTGGCGCAGTGCACGATGAGTATATGAAGATG--------
#=GS H99/1-569 DE CP003821.1:c1145001-1144433 Cryptococcus neoformans var. grubii H99 chromosome 2, complete sequence
H99/1-569                                   -----------------------------------------------------------------------------CTCGCTTAGTGGCCCA--CATTTCGTCTTCACCCAT--GTGTGGTGTAGGGGATCGGTGTCACTCGAGCATAGACCGATGCT-------TCTTTGAAGCTTCCGACGTTCATTTGCTATCTTTCCGAGGCGCA--AGCCA-CTTTTACGGGAATGATACTTCACAGGCGCCGGATATCATGTTATCTT---AGGGGAAAATTTTACAAGATCTCGACACCAAGGCAGGGCGGTCAGTTGGCGTAAGGCGAGTGGGTGTTTTGCCGTGTTGTCGAGATGTTGTTTCATCCTTTCACATATTCCAAAGGTGCTTAACACTCTGCGAGCGATGATT--ACCAAAATCGTCTTGCTATTTTAGGAA-CACCGAGAATGTTGCTGGCGGCCTCCAAA--TGCTCAGGAGTGT----------------------------------CTTGCCCCCATTGTTACTCACCGG-CGCGGAAAA-----CTGAAG--TAGCTGGTCTAT--GCAGTGGGTACATATTATTCTATAGTGACGT-----ACTTCTATGCA---TTTTG-TCTTGCGAGAATTTTACTGCCGATTATGTGTATGTTATCGTTTTTTACTTAA-ATGGTGCACGATGAGTAGATGAAGATGTGACGCA-
#=GS HACAcnag03904-1/1-165 DE  26S protease regulatory subunit 6B CP003821.1:c1145001-1144837 Cryptococcus neoformans var. grubii H99 chromosome 2, complete sequence
HACAcnag03904-1/1-165                       -----------------------------------------------------------------------------CTCGCTTAGTGGCCCA--CATTTCGTCTTCACCCAT--GTGTGGTGTAGGGGATCGGTGTCACTCGAGCATAGACCGATGCT-------TCTTTGAAGCTTCCGACGTTCATTTGCTATCTTTCCGAGGCGCA--AGCCA-CTTTTACGGGAATGATACTTCACAGGCGCCGGATATCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS R265/1-567 DE CP025761.1:c1512988-1512422 Cryptococcus gattii VGII R265 chromosome 3, complete sequence
R265/1-567                                  -----------------------------------------------------------------------------CTTGCTTAGTGACCTA--TATTTCGTCTTCACCCAT----GTGGTGTAGGGGATCGGTGTCACTCGAGCATAGAACGATGCT-------TCAATGAAGCTTCCGACGTTCATTTGCTATCCTCCTGAGGCGCA--AGCCA-CTTTTACAGGAACGGTACTTCACAGGCGCCGGATATCTTTTTTTTCTT------GGGAACTGTACAAGATCTCGACACCAAGGCAGGGCGGTCAGTTGGCGTAAGGCGAGTGGGCGTTTTGCCGTGTTGTCAAGCTGTTGTTTCATTTTTTTTTTC----CAAAGGTGCTTAACACTCTGCGAGCGATGATT--ACCTAAATCGCCTTGCTATTTTAGGAA-CACCGAGATTGTTGCTGGCGGCCTCCAAA--TGCTCTGGAGTGT----------------------------------CTTGCCCCCATTGTTACTCACCGG-CGCGGAAAA-----CTGAAG--TAGCTGGTCTAT--GCAGTGGGTACATATTAC--TATTGTGTAGTTATATACTTTCGTACACTGTT-TGATCTTGCGAGAATCTAACTT-CGATTATATGTATGTTATCATTTTTTACTTGGCGCAGTGCACGATGAGTATATGAAGATGTGACGCGG
#=GS CryWin/1-201 DE AWGH01000009.1:c536012-535812 Cryptococcus wingfieldii CBS 7118 supercont1.9, whole genome shotgun sequence
CryWin/1-201                                ------------------------------------------------------------------ATTTCATTTGTCCCGCTCAGCGACCCACCTTTCTCGCTTGCACTCTCCACA---GTGTCAGCGAACGGCGTTGCACAGGCGCAGAAGGACTGC-------CTTTACGGGTTTCCAACGTTTTTTTGCTATCCTCTCGGGGCCTCTGAGCCAACT-TCACGAGAATGGTACTTCACAGGCGTTGGACATCTTTCATCTATTTTGTCTCTTCTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS CryAmy/1-176 DE MEKH01000002.1:1172409-1172584 Cryptococcus amylolentus CBS 6273 supercont2.2, whole genome shotgun sequence
CryAmy/1-176                                ----------------------------------------------------------------------------TCCCGCTCAGCGACCCACCTTCCTCGCTTGCACTCTCCACA---GTGTCAGCGAACGGCGTTGCACAGGCGCAGAAGGACTGC-------CTTTACGGGTTTCCAACGTTTTTTTGCTATCCTCTCGGGGCCTTCGAGCCAACT-TTACGAGAATGGTACTTCACAGGCGTTGGACATCTTTCTTCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS CryFla/1-232 DE CAUG01000459.1:c121561-121330 Cryptococcus flavescens NRRL Y-50378 WGS project CAUG00000000 data, contig NODE_979_length_208107_cov_46_987621, whole genome shotgun sequence
CryFla/1-232                                -------------------------AGAGCAGACCCAGTTGGACACTGACCCGATACGCGTTTCACTCTCCTCCCACACCGCTCATTGACCC----CCTTCGCC--CACCCTCATCC-CGGTGCAAGCGTCCTCGGTCGTCCAAGCGAAGACCGACAGCGTTGTGCTTGCACTTCGTACGGGCGTTTTTTTGCTATCCTCTCGCGGCGT--AAGCCA-CATCAACGAGGACGATACTTCACAGGCGCTCGACACGATCTCGCTCACT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS KwoSha/1-175 DE NQVO01000006.1:31525-31699 Kwoniella shandongensis strain CBS 12478 scaffold00006, whole genome shotgun sequence
KwoSha/1-175                                -----------------------------------------------------------------------------CTCGCTTAGCGACCCATC-ATATCGCCCTCACC-TCTTCTAC-GTGATGGCGAACGGCGTCACACGAGCGCAGAGCGATGGCT------CGAAAGAGCCA-TCGGCGTTTTTTTGTCATCCTCCCGCGGCCT-TGCGCTAA-AACTACGGGAACGGTACTTCACAGGCGCTGGATATCTCGAGTCGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS KwoBes/1-199 DE ASCK01000040.1:350852-351050 Kwoniella bestiolae CBS 10118 cont1.39, whole genome shotgun sequence
KwoBes/1-199                                -----------------------------------------------------------GTCATGCTTCTCCCAATCCCCGCTCAGTAACCCAT-CATCTCGCTCTCACCCTGTTCTGCGGTGATAGCGAAAGGCGTTACAATTGCGAAGAGCAACCCCACTTTCTTT--CTGGAAAGTCAGCGTTCATTTGCTATTTCCTCGAGGCTT--AGGCCACTA-TCACGAGGTAAATACTTCACAGACGCTGGACATGCTCTTTTTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS KwoDej/1-176 DE ASCJ01000025.1:c317985-317810 Kwoniella dejecticola CBS 10117 cont1.25, whole genome shotgun sequence
KwoDej/1-176                                --------------------------------------------------------------------------TACCCCGCTCGGTGATCCAT-CTACTTGCTTTTACC-TATCCAGCGGTATTAGCGAAAGGCATTACAAAAGCGAAGAGCGATCCAACTTTTTT----CGGAAAGTCAGCGTTCATTTGCTATTCCCTTGAGGCGCG-ATGCCAATC-TTACAAGGAAAATACTTCACAGACGCTGGACATGCTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS PapLau/1-213 DE JDSR01000627.1:c22920-22708 Papiliotrema laurentii RY1 contig_648, whole genome shotgun sequence
PapLau/1-213                                --------------------------------------ACTGACGCTTCCAACAGCATACATCCTCCCCGTCCTTCCCCCGCTCATTGACCT---CTTCTCGTT--CACCCTCATCC-CGGTGCCT-CGTACGTGGTCAGCCGAGCGAAGAGCGAT--TTCGTGTGCTCTGCACCGGTCCAACGTTCATTTGCTATCACCTTGCGGCTC--ACGCCAATTCACAAGAG--CGGTACTTCACAGACGTTGGACATGACGGCTCGC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS PapTer/1-230 DE JAHXHD010001136.1:c3840-3611 Papiliotrema terrestris strain LS28 scaffold-1135, whole genome shotgun sequence
PapTer/1-230                                ---------------------CATCAGAGCGTGACCCCTCCCGTACTGACCCAGCACGTTCACTCCCGTCTCCTCATCCCGCTCATTGACCCC----TTTCGCT--CACCCTCATCC-CGGTGCAAGCGTCCTCGGTTGTACGAGCGAAGACCGACATCGTTGTGCTTGCACTTCATGCCGGCGTTTTTTTGCTATCCTCTCGCGGCG--ATTGCCAAGA-TCACGAGGACGATACTTCACAGGCGCGGGACACGATCTCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS CryVH5/1-171 DE JANBXI010000029.1:136916-137086 Cryptococcus sp. VH57_BW 29, whole genome shotgun sequence
CryVH5/1-171                                ---------------------------------------------------------------------------CATCCGCTTAGCGACCCAC-TACCTCGCCCTCACCCTCCCTC---GTGACGGCGATTGGCGTTGCACGAGCGAAGAGCGAGCGCTCTTA--------TGAGCTGCGGCGTTTTTTTGCTATCCCCCCGGAGCGC--AAGCTACTT-TTACGGGGACGGTACTTCACAGGCGCTGGACACTCCTTCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS VanFra/1-228 DE BEDY01000008.1:c534727-534500 Vanrija fragicola DNA, scaffold: scaffold_8, strain: JCM 1530, whole genome shotgun sequence
VanFra/1-228                                TATACAGTTTCATGCACTACATCGACGTTCACGAGCTTCTGTTCTCAATCCCTTCCCCTATCCACTCTACCTTCCTACCCGCTCCACGACCC-----GACTGCT--CATCCTCATCT-CGGTGGGCGCGTCC--GGTCACTGGAGCGCAGAACGTTA----------------------CAGCGTTTTTTTGCTATCGCTCCGCGGCCT--CGGCCTGAT-TCACGGAGAGGGTACTTCACAGGCGCCGGACATCTTTTACGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS TriLai/1-220 DE BCKV01000006.1:925927-926146 Trichosporon laibachii DNA, scaffold: scaffold_5, strain: JCM 2947, whole genome shotgun sequence
TriLai/1-220                                ------------------------TATATCAAGATCGAACCAACCCGACTCCCCCCTCCCCTCCCTCCACCCCAACCCCCGCTCCG-GACC-----AGATTGTC--CACCCTCATCT-CGGTGG----ACGTGTCGGGTCTAGAGCGAAGAACCATTAGTCTTCACGGAC-TGG----CTGGCGTTTTTTTGCTATCACCCCGGGGCT---CTGTCCACTTTCACGGGGATGGTACTTCACAGGCGTCGGACATCCAATGTCCGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS ApiBra/1-181 DE JAMALJ010000010.1:571256-571436 Apiotrichum brassicae strain M2204 ctg_10, whole genome shotgun sequence
ApiBra/1-181                                -------------------------------------------------------CCCTCCTCCATCCTTCCTTGATCCCGCTCCG-GACT-----AGACTGCA--CATCCTCATCC-AGGTGC----GCGTGTCGGGTCTAGAGCGAAGAACGATTGGCTTT-------ACGGCCTTCTGGCGTTTTTTTGCTATCACCCCGCGGTTC---ACACCATGTTCACGGGGATGGTACTTCACAGGCGTCGGACATCTTGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS PasPL2/1-233 DE JAMFRE010000022.1:276548-276796 Pascua sp. PL2904B ctg_22, whole genome shotgun sequence
PasPL2/1-233                                -----CCTCGTCATGCAGCACATCAACGATCACGCCCTCGCATCTCCCTCCCACCTCCCCTTCCCTCCCAAACTC-CACCGCTCC-CGACCTCCAT-TTGCGG---CACCCTCATCC-CGGTGT-----CGCAGGTGGTCAGGAGCGCAGAACGACGGCC----------TCGGCCA-CTGGCGTTTTTTTGCTATCCCCCCGCGGCA----AGTCCACTTCTACGGGGACGGTACTTCACAGGCGTCGGACATCTTGTCCATGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS TriGue/1-174 DE BCJX01000001.1:c1444535-1444362 Trichosporon guehoae DNA, scaffold: scaffold_0, strain: JCM 10690, whole genome shotgun sequence
TriGue/1-174                                ------------------------------------------------------------TTCCCTCCCCAACTCCCACCGCTCC-CGACCTCCAT-TTGCGG---CACCCTCATCC-CGGTGT-----CGCAGGCGGTCAGGAGCGCAGAACGACGGCC----------TCGGCCA-CTGGCGTTTTTTTGCTATCCCCCCGCGGCA----AGTCCACTTCTACGGGGACGGTACTTCACAGGCGTCGGACATCTTGTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS CutDas/1-180 DE BEDX01000008.1:c456434-456255 Cutaneotrichosporon daszewskae DNA, scaffold: scaffold_8, strain: JCM_11166, whole genome shotgun sequence
CutDas/1-180                                ----------------------------------------TGCAATAGATCCACCGACCCTCGACCTGGCTACTAACCCCGCTCC--AACCAC-----TGTGCC--CACCCTCATCC-CGGTGG-----AGTGCTCGTTTTGGAGCGCAGATCCA-----------------------CCGACGCTCATTTGCTATCGCCCCGCGGTC----CGCCAAGT-TCACGGGGAGGATACTTCACAGGCGCCGCACATCCTTGATGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS CutOle/1-267 DE XM_018421789.1:1300-1566 Cutaneotrichosporon oleaginosum endopeptidase (CC85DRAFT_281943), mRNA
CutOle/1-267                                --------------------GCAACCATCGATTCAGCCACGCTCACGTTCCCCATCCTCATCTCACTCCTCCCATCCCCCGCTC--CGACC--------TCGTGCCCACCCTCATCT-CGGTGC-----GGCGCGGCGTCTCGAGCGCAGAGCGACGGC------------TTGCCGTC-GGCGTTCATTTGCTATCCTTCCGCGGCAT---TGCCCAACTTCACGGGGACGATACTTCACAGGCGTCGGACATCTTCGGATGCAACCGTGTCACAATCCTCTCAAATGTCGCAGTACTGACGGGTGCGAGCGCGAGAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS CutOle/1-232 DE QKWL01000003.1:2627330-2627562 Cutaneotrichosporon oleaginosum strain ATCC 20508 ATCC20508_contig03, whole genome shotgun sequence
CutOle/1-232                                GGTAATATGTACATTGTCATGCAACCATCGATTCAGCCACGCTCACGTTCCCCATCCTCATCTCACTCCTCCCATCCCCCGCTC--CGACC--------TCGTGCCCACCCTCATCT-CGGTG-----CGGCGCGGCGTCTCGAGCGCAGAGCGACGGC------------TTGCCGTC-GGCGTTCATTTGCTATCCTTCCGCGGCAT---TGCCCAACTTCACGGGGACGATACTTCACAGGCGTCGGACATCTTCGGATGC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS CutDer/1-219 DE JAMALL010000007.1:642446-642664 Cutaneotrichosporon dermatis strain M4303A ctg_7, whole genome shotgun sequence
CutDer/1-219                                -------------CGATACGAGAGCTCACCGGGTCGTGAACCCCTTTCCTACCCTCCTCTCCCCTTCCCACTCCCAC-CCGCTC--CGACC--------TCGTGTTCACCCTCATCC-CGGTGCCA-----CGCGGCGTCTCGAGCGCAGAGCGACGGC------------TTGCCGTCCAGCGTTCATTTGCTATCCCCCCGCGGC-T--CTGCCAAACT-CACGGGGACGGTACTTCACAGGCGCTGGACATCTTCATTATTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS HACAcnag03904-2_from-CNB03930/1-169 DE processed-exonic-HACAsnoRNA-169nt-inside-3utrCNB03930-endopeptidase ncrna 2:1157076:1157245:-1
HACAcnag03904-2_from-CNB03930/1-169         ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAAGGTGCTTAACACTCTGCGAGCGATGATT--ACCAAAATCGTCTTGCTATTTTAGGAA-CACCGAGATTGTTGCTGGCGGCCTCCAAA--TGCTCAGGAGTGT----------------------------------CTTGCCCCCATTGTTACTCACCGG-CGCGGAAAA---------CTGAAGTAGCTGGTCTATG--CAGTGGGTACATATTA-----------------------------------------------------------------------------------------------------------------------------
#=GS CryWin/1-277 DE AWGH01000009.1:c535786-535510 Cryptococcus wingfieldii CBS 7118 supercont1.9, whole genome shotgun sequence
CryWin/1-277                                -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGCGCCGAGGCAGGAAAGTCAGTCGGCTTCGGGCGAATGGCTAATCTCCCATGTCGCCGGATTCTTCTCTATTACCATCCCCTCCCCCATTCCCCAACAATCCCAAGGTGCTTAACACTCTGCGAGCGATCA--TATCCAAAATCGACTTGCTATTTTAGGAA-CACCGAGAACGAATTCATGGCAACTTCTCCTTGCTCAGGTACTG---------------------------------TTGTCTCCCAGTTATTACTCACCAG-CGCGGA-------TTT--CTGAAGCGACTGGTCTATG--TATTGGGTACACTTTTGT---------------------------------------------------------------------------------------------------------------------------
#=GS CryFlo/1-188 DE RRZH01000001.1:c1079207-1079020 Cryptococcus floricola strain DSM 27421 chromosome 1, whole genome shotgun sequence
CryFlo/1-188                                ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACAATCCCAAGGTGCTTAACACTCTGCGAGCGATCA--TATCCAAAATCGACTTGCTATTTTAGGAA-CACCGAGAACGAATTCATGGCAACTTCTCCTTGCTCAGGTACTG---------------------------------TTGTCTCCCAGTTATTACTCACCAG-CGCGGA---------TTTCTGAAGCGACTGGTCTATG--TATTGGGTACACTTTTGTCAATGC---------------------------------------------------------------------------------------------------------------------
#=GS CryAmy/1-189 DE MEKH01000002.1:1172721-1172909 Cryptococcus amylolentus CBS 6273 supercont2.2, whole genome shotgun sequence
CryAmy/1-189                                ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAATCCCAAGGTGCTTAACACTCTGCGAGCGATCA--TATCCAAAATCGACTTGCTATTTTAGGAA-CACCGAGAACGAATTCATGGCAACTTCTCCTTGCTCAGGTACTG---------------------------------TTGTCTCCCAGTTATTACTCACCAG-CGCGGA---------TTTCTGAAGCGACTGGTCTATG--TATTGGGTACACTGTTGTCAATGCA--------------------------------------------------------------------------------------------------------------------
#=GS NaeAur/1-170 DE JAKFAO010000001.1:c675969-675800 Naematelia aurantialba strain NX-20 Contig1, whole genome shotgun sequence
NaeAur/1-170                                ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAACAATCCGGTGTCTAACACTCTGCGGACGATGCTAT-ACCCAAATCG-TTTGCGATTTTCATGT-CACCAACAAAGAGCCTGGGCCC----CTCCTTCCCATGGAGTGTGG----------------------------------CTTACC---TACTACTCACCGGACGCG----TCAG-TATCCGTGTCGTTCCCGGTCCATA--GCTAGGATATA----------------------------------------------------------------------------------------------------------------------------------
#=GS NaeEnc/1-190 DE MCFC01000062.1:c27509-27320 Naematelia encephala strain 68-887.2 BCR39scaffold_62, whole genome shotgun sequence
NaeEnc/1-190                                ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCATATTTCCGGTGTCTAACACTCTGCGGACGATGCTTT-ACCCAAATCG-TTTGCGATTTTCATGT-CACCAAGAAAGACCCCGAGCCC----CTTCTTTCCATGGAGTGTGG----------------------------------TTCGCC---TACTACTCACCGGACGCG----TCAG-TATCCGTGTCGTTCCCGGTCCATA--GCTAGGATATATATTTCATACCATCTTCTGG--------------------------------------------------------------------------------------------------------------
#=GS DioCro/1-192 DE BCKK01000011.1:49404-49595 Dioszegia crocea DNA, scaffold: scaffold_10, strain: JCM 2961, whole genome shotgun sequence
DioCro/1-192                                ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCACACGGTGCTTAACACTCTGCGAGCGAAGCCAA-ACCCAGTTCGACTTGCTATTTTTGGTTACACCTAGAACAACCTTGGCTTGCCTTTCTCCTCTCGGGGAGGGA-----------------------------GGTCGGTCATACCC---CATACTCACCGGATCAG--TTTTATTCT-CCGTGCTGTTACCGGTCCATAA-GAGCGGATAAATCTTGTATCTT-----------------------------------------------------------------------------------------------------------------------
#=GS DioHun/1-214 DE JAMRJJ010000002.1:312705-312918 Dioszegia hungarica strain Y1 Contig2, whole genome shotgun sequence
DioHun/1-214                                -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCACACACGGTGCTTAACACTCTGCGAGCGAAGCCAA-ACCCAGTTCGTCTTGCTATTTTTGGTTACACCCAGAGAGACCTTGGCTGGCCTCTTTTCCCTCTCGGGGGAA-------------------------GGGGGGTCGGTC-TGCCC---CATACTCACCGGATCAG---TTGTA-CTTTCGTGCTGTTACCGGTCCATAA-GCGAGGATAAATCTATTCCTTCGGATATAGCCATGCATCC-----------------------------------------------------------------------------------------------------
#=GS CryFag/1-204 DE BCHU01000003.1:c293284-293081 Cryptococcus fagi DNA, scaffold: scaffold_2, strain: JCM 13614, whole genome shotgun sequence
CryFag/1-204                                ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTCCTACCGGTGCTT-ACACTCTGCGAGCGATGCTTA-ACCTACATCCACTCGCTATTTATAGAATCACCTAGAAACACC----CACGATACCTCCATCATCCAGAGAGG----------------------------------TTATCGCC---TTATACTCACCGAACTC--TTGAGATTCAAACACGCAGTGATCGGTCCATTTTAATGGGATACATGTTTTTGTTTTATTGTACTGGTTGTTC------------------------------------------------------------------------------------------------------
#=GS CrySki/1-223 DE BCHT01000006.1:689101-689323 Cryptococcus skinneri DNA, scaffold: scaffold_5, strain: JCM 9039, whole genome shotgun sequence
CrySki/1-223                                ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCCCATGGTGCTT-ACACTCTGCGAGCGATGGTATTCCCACATCCGTCTTGCTATTTATAGATCCACCAAGATCCACC----CACGGTTCCTCCA-CATCCAGAGAGG----------------------------------TAACCGCC---TGCTACTCACCGG-CTC----TTTCGTTAAACACGTAGTGACCGGTCCATTTTGACGGGGTATATCTGTAGTCATTCTTATGCATCTATTCTCAACTGAGCATGGTATATGATATGT-----------------------------------------------------------------------------
#=GS KwoSha/1-236 DE NQVO01000006.1:31902-32137 Kwoniella shandongensis strain CBS 12478 scaffold00006, whole genome shotgun sequence
KwoSha/1-236                                ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACACACGGTGCTTAACACTCTGCGAGCGATGA--TTACCTATGTCGTCTTGCTATTTTAGGAA-CACCAATAGAAATAT-TTGGCGGGTCTCCCTCCCAGTGGAGA-------------------------------------TTTCGTCCCTTGCTACTCACCGGGTTTGGA--CTTTTCCATTCCGCT--CTCCGGTCCATTTGTCTT-GGTACATCCTGTCTATACGCTCTCATATTCTACATATTACTCAAATGCATAACATAGACATTATCATCCA------------------------------------------------------------------
#=GS KwoBes/1-193 DE ASCK01000040.1:351230-351422 Kwoniella bestiolae CBS 10118 cont1.39, whole genome shotgun sequence
KwoBes/1-193                                -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAACGGTGCTTAACACTCTGCGAGCGATGA--TTACCTATGTCGACTTGCTATTTTAGGAA-CACCAATATAGACTTGT-TACGTCTCCTCCGCGCTCTGGAGGATG----------------------------------TATGTCCCCTTGTTACTCACCGA-CTCGGA---TGT-CTGGGATGATG--ATCGGTCCATAT-TATAGGGTACATCTTTTTTTCTTTTTGTATTTGA-----------------------------------------------------------------------------------------------------------
#=GS KwoMan/1-228 DE ASQE01000034.1:346900-347127 Kwoniella mangroviensis CBS 8507 cont2.34, whole genome shotgun sequence
KwoMan/1-228                                -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAACAAACGGTGCTTAACACTCTGCGAGCGATGA--TTACCTATGTCGTCTTGCTATTTTAGGAA-CACCAAGAAAGACTTGTTTACGTCTCCTCCGCGCTCTGGAGGATG----------------------------------TACGTCCCCTTGTTACTCACCGA-CTCGGA----TTGACGGGATGATG--ATCGGTCCATAT-TATAGGGTACATCCTTAATTATGTATATCATTGACTTTACATGTTCATGCATTTGTGCCGACAT-----------------------------------------------------------------------------
#=GS KwoHev/1-234 DE ASQC01000022.1:c53239-53006 Kwoniella heveanensis CBS 569 cont2.22, whole genome shotgun sequence
KwoHev/1-234                                ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACATCACACGGTGCTTAACACTCTGCGAGCGACGA--TATCCAAAGTCGACTTGCTATTTTAGGAA-CACCAAGATCGATAAGCCTTTTTTTCCTGTAAAAAGGGGAACTTGGCTGGCGTTTCTGTTCTCCAATGCTCGGAGGTGGGACGTCCCCTTGATACTCACCTG-CTCGGATTCCTTCACAGGAAGATG---CTGGTCCATT--TATAGGGTATATATGTCTGATTATTTTCCATAT------------------------------------------------------------------------------------------------------------
#=GS KwoDej/1-200 DE ASCJ01000025.1:c317599-317400 Kwoniella dejecticola CBS 10117 cont1.25, whole genome shotgun sequence
KwoDej/1-200                                ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAATAACGGTGCTTAACACTCTGCGAGCGATGA--TTACCTAAATCGCCTTGCTATTTTAGGAA-CACCAAAAAAGACTTGTCTACGTCTCCTCCGCGCTCTGGAGGATG----------------------------------TACGTTCCCTTGTTACTCACCGA-CTCGGA-----TCTAGGGATGATG--TTCGGTCCATAT-TATAGGGTACATCTCATTACATCTCATCACGCTTTGGTA------------------------------------------------------------------------------------------------------
#=GS SaiPod/1-200 DE RSCD01000003.1:1099160-1099359 Saitozyma podzolica strain DSM 27192 scaffold_3, whole genome shotgun sequence
SaiPod/1-200                                --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCTTCACGGTGCTTAACACTCTGCGAGCGGAGA-CCAACCCAGTCCGACTTGCTATTTTTGGATTCACCGAGATTGAGACCGGCGCCTCCCTCCC----AGGGGAGGATG--------------------------------------TCCGCCTGCTACTCACCGG-CTTGGCTGTACCT-CGTGCCAATG--ACCGGTCCATAT-TACAGGATACACCTATTCGTACCACATACCACTTGTACAT-----------------------------------------------------------------------------------------------------
#=GS CryVH5/1-186 DE JANBXI010000029.1:137270-137455 Cryptococcus sp. VH57_BW 29, whole genome shotgun sequence
CryVH5/1-186                                ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCCAACCCCAAGGTGCTTAACACTCTGCGAGCGATCA--TCACCAAAATCGTCTTGCTATTTTAGGAA-CACCGAGAACTACGCTGGCGGCCTTTCTATGCTC---AGAGAGTG--------------------------------TCTTGCCCCCATTGTTACTCACCGG-CCCGGA------AAACTGAAGAAG---CTGGTCTATA--CAGTGGGTATATATATATATCCCC---------------------------------------------------------------------------------------------------------------------
#=GS CryGC5/1-198 DE JALPBZ010000025.1:146005-146202 Cryptococcus sp. GC_Crypt_5 iso00_58_25, whole genome shotgun sequence
CryGC5/1-198                                -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCACCTACGGTGCTTAACACTCTGCGACCGATGA--TTACCAAAATCGCGTTGCTATTTTAGGAA-CACCAATAGAGATATTTAGCGGGTCTCCCTCCC-AGTGGAGA-------------------------------------TTTCGTTCCGTGTTACTCACCGG-CCTGGA--TCAATACGTTATCCAG--TCCGGTCCATAT-TTAGCGGTACAATCATGTATATACCAATACGTTTGT---------------------------------------------------------------------------------------------------------
#=GS CryGC7/1-195 DE JALPBX010000002.1:c336569-336375 Cryptococcus sp. GC_Crypt_7 iso00_79_2, whole genome shotgun sequence
CryGC7/1-195                                ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCCACGGTGCTTAACACTCTGCGACCGATGA--TTACCAAAATCGCGTTGCTATTTTAGGAA-CACCAATAGAGATATTTAGCGGGTCTCCCTCCC-AGTGGAGA-------------------------------------TTTCGTTCCGTGTTACTCACCGG-CCTGGA--TCAATACGTTATCCTG--TCCGGTCCATAT-TTAGCGGTACATCCATGTATATACAGATATCAGTTG---------------------------------------------------------------------------------------------------------
#=GS CryGC3/1-185 DE JALPCB010000041.1:114030-114214 Cryptococcus sp. GC_Crypt_3 iso00_45_41, whole genome shotgun sequence
CryGC3/1-185                                ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCTACGGTGCTTAACACTCTGCGACCGATGA--TTTCCAAAATCGCGTTGCTATTTTAGGAA-CACCAATAGAGATATTTAGCGGGTCTCCCTCCC-AGTGGAGA-------------------------------------TTTCGTTCCGTGTTACTCACCGG-CCTGGA--TCAATACGTTATCCAG--TCCGGTCCATAT-TTAGCGGTACATTCATGTCTATACAG-------------------------------------------------------------------------------------------------------------------
#=GS TriGue/1-210 DE BCJX01000001.1:c1444239-1444030 Trichosporon guehoae DNA, scaffold: scaffold_0, strain: JCM 10690, whole genome shotgun sequence
TriGue/1-210                                ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCATCCATCGGTGCTTAACACTCTGCGAGCCATGA-TTTACCTACATGAGCCTGCGATTTTCATGA-CACCAAGAAGACCAT---GCG-CCTCCCCTCCC-AAGGGAGA--------------------------------------TACGCTACCCGCTACTCACCA--CGGGGGCTGTTCAAT---GCCCTTGG-ATGGTCCGTTG--ACGGGAAACATCAGTACACTCTTTCATGCATTTCTTTATGTTACCTTTCTTG----------------------------------------------------------------------------------------
//

• Image source 2.4:

# STOCKHOLM 1.0
#=GF RW van Nues, September 2023
#=GF https://coalispr.codeberg.page/paper
#=GS H99-in-CNAG_04868/1-373 DE mRNA-large subunit ribosomal protein L28e L28eCP003821.1:c1539890-1539518 Cryptococcus neoformans var. grubii H99 chromosome 2, complete sequence
H99-in-CNAG_04868/1-373                 TCTGTTCCTCTATTCGCTTCTCTCCGCCTCGCACACTCGCCCTTCCAATGTCCTCACTCTCTCCATCCTTTATTCTTCTCCCATATCGTACACAACCAATCGCAGCTGCACTAGAACTCCCCGGAACC----GTCTTCTCTTC-AGGGGACC---ATGAAGGGCCGAGCGTATTAGGCT-TGCAATATTGCCCCG-TCAGGGGATGTCCCT------GCCTTTTTCCTTGTCCCGACTACGTCTTCCACGTCGGGGGATC-TCTGTGCTGGCAGGGCAAATCCAT-ACATCTAAACCTTAGCGCTGTTTCCTTCTC--GGTCAAGGACC------GAAAAGGTAATGGGGCGATTGAGCAAGGAATTTGAGAAGGCAAATCGAGGAGCAGAAGAGGAAG
#=GS HACAcnag04068/1-173 DE intronic-HACA-snoRNA-173nt-in-CNAG_04068 CP003821.1:c1539791-1539619 Cryptococcus neoformans var. grubii H99 chromosome 2, complete sequence
HACAcnag04068/1-173                     ---------------------------------------------------------------------------------------------------TCGCAGCTGCACTAGAACTCCCCGGAACC----GTCTTCTCTTC-AGGGGACC---ATGAAGGGCCGAGCGTATTAGGCT-TGCAATATTGCCCCG-TCAGGGGATGTCCCT------GCCTTTTTCCTTGTCCCGACTACGTCTTCCACGTCGGGGGATC-TCTGTGCTGGCAGGGCAAATCCAT-ACAT-------------------------------------------------------------------------------------------------------------
#=GS WM276/1-251 DE CP000286.1:83735-83985 Cryptococcus gattii WM276 chromosome A, complete sequence
WM276/1-251                             --------------------------------------------------------------------------------------------------ACCGCAGCTGCACTAGAACTCCCCGGAACC----GTCTTCTCTTCAAGAGGACC---ATGAAGGGCCGAGCGTATTAGGCT-TGCAATATTGCCCCG-TCAGGGGATGTCCCT------GCCTTTTTCCTTGTCCCGACTACATTTTCCACGTCGGGGGATC-TCTGTGCTGGCAGGGCACATCCATTACACCTAGACATTCTTTGTGTTCTTTCATTCCTTGACCGATTGCTTTGGAAGAAGACGATCGGGTGGTTGAGCATGGAA----------------------------------
#=GS HACAcnag04068_in-CNB05510/2-175 DE HACAsnoRNA-175nt-in-intron-CNB05510 ncrna 2:1547695:1547863:-1
HACAcnag04068_in-CNB05510/2-175         ---------------------------------------------------------------------------------------------------CCGCAGCTGCACTAGAACTCCCCGGAACC----GTCTCCTCTTC-AGGGGACC---ATGAAGGGCCGAGCGTATTAGGCT-TGCAATATTGCCCCG-TCAGGGGATGTCCCT------GCCTTTTTCCTTGTCCCGACTACATCTCCCACGTCGGGGGATC-TCTGTGCTGGCAGGGCAAATCCAT-ACATC------------------------------------------------------------------------------------------------------------
#=GS R265/1-173 DE CP025761.1:c1873958-1873786 Cryptococcus gattii VGII R265 chromosome 3, complete sequence
R265/1-173                              ------------------------------------------------------------------------------------------------CAACCGCAGCTGCACTAGAACTCCCCGGAACC----GTCTTCTCTTTAAGAGGACC---ATGAAGGGCCGAGCGTATTAGGCT-TGCAATATTGCCCCG-TCAGGGGATGTCCC------TGCCTTTTTCCTTGTCCCGACTACATTTTCCACGTCGGGGGATC-TCTGTGCTGGCAGGGCACATCCAT------------------------------------------------------------------------------------------------------------------
#=GS CryVH5/1-175 DE JANBXI010000029.1:75098-75272 Cryptococcus sp. VH57_BW 29, whole genome shotgun sequence
CryVH5/1-175                            ---------------------------------------------------------------------------------------------------CCGCAGCTGCACTAGAACTCCCTGGAATC-----GTGCCCTCTGTGGCTACGT---ATGAAGGGCCGAGCGTACAAGGCT-TGCAACAGTGCCTAG--CACAGGACGTCCCTCCT-ATTCCTT--GTCCCGG-CGCGGTATTTACCAGACGCCGGGGGAT--TATGTGCTGGTTGGATACATACCTCTCCCG------------------------------------------------------------------------------------------------------------
#=GS CryGC5/1-184 DE JALPBZ010000061.1:15867-16050 Cryptococcus sp. GC_Crypt_5 iso00_58_61, whole genome shotgun sequence
CryGC5/1-184                            ---------------------------------------------------------------------------------------------------CCGCAGCTGCACTAGAACTCCCCGGAACC----GCTGCTTTCTGCAGACGTACC--TTGAAGGGCCGAGCGTATTAGGTT-TGCAAAATTGA-TCG-TCATACA--ATCCCACCT-ATTCCTT--GTCCCGG-CGAGGTTTTGACCAGACGCCGGGGGAT--CATGTGCTGGTTGGATACATCCCATCTCCTGTCTATCTC---------------------------------------------------------------------------------------------------
#=GS CryGC3/1-184 DE JALPCB010000181.1:c22719-22536 Cryptococcus sp. GC_Crypt_3 iso00_45_181, whole genome shotgun sequence
CryGC3/1-184                            ---------------------------------------------------------------------------------------------------TCGCAGCTGCACTAGAACTCCCCGGAACC----GCTGCTTTCTGCAGACGTACC--TTGAAGGGCCGAGCGTATTAGGTT-TGCAAAATTGA-TCG-TCATACA--ATCCCACCT-ATTCCTT--GTCCCGG-CGAGGTTTTGACCAGACGCCGGGGGAT--CATGTGCTGGTTGGATACATCCCATCTCCTGTCTCTTGG---------------------------------------------------------------------------------------------------
#=GS CryGC7/1-190 DE JALPBX010000056.1:c114527-114338 Cryptococcus sp. GC_Crypt_7 iso00_79_56, whole genome shotgun sequence
CryGC7/1-190                            --------------------------------------------------------------------------------------------------CTCGCAGCTGCACTAGAACTCCCCGGAACC-GTTGCGGTTCGCCGTAGACGAACC--ATGAAGGGCCGAGCGTATTAGGTC-TGCCAAATTAA-TCGTTTCTACA--ATCCCTCCT-ATTCCTT--GTCCCGA-CGAGGTCTTGACCAGACGTCGGGGGAT--CATGTGCTGGACGGATACATCCTATATCTTGGCTGCTGCG--------------------------------------------------------------------------------------------------
#=GS CryFag/1-193 DE BCHU01000003.1:c258678-258486 Cryptococcus fagi DNA, scaffold: scaffold_2, strain: JCM 13614, whole genome shotgun sequence
CryFag/1-193                            -------------------------------------------------------------------------------------------CCATCCCCATGCAGCTGCGTTAGAACTCCCTGGACAT---AATCTTTTATTTTAAAAGGATCA-ATGAAGGGCCGAGCGTATTAGGTC-TGCTATATTTATTTAAATTTACTTTATTTCCCTACCTAATCCATGTCCCGTTTGAGGTATTTACCAGACAACGGGGGAGAT--TGTGCTGGTTGGGAACAAACAAACCGTT------------------------------------------------------------------------------------------------------------
#=GS KwoHev/1-179 DE ASQB01000064.1:44835-45013 Kwoniella heveanensis BCC8398 cont1.64, whole genome shotgun sequence
KwoHev/1-179                            ------------------------------------------------------------------------------------------------TCCACGCAGCCGCACTAGAACTCCCCGGATGC--------GTCTCATCACGC-------TTGAAGGGCCGAGCGTACGAGGTCTTGCAACATTGATTTTGTTC----AAATTGTGAACGTGTCCCTTTCACCTCTATGGGCGTTTCTTCCAGCTCTCAGAGATAT--TGGGATG-TT-TGCACAACCATTCATCTGATTTCC-----------------------------------------------------------------------------------------------------
#=GS KwoSha/1-191 DE NQVO01000014.1:c172109-171919 Kwoniella shandongensis strain CBS 12478 scaffold00014, whole genome shotgun sequence
KwoSha/1-191                            -----------------------------------------------------------------------------------------------ACCCCCGCAGCCGCGTTAGAACTCCCTGGACAA----CGTCTCTCTTTGAGAGGCCAC--ATGAAGGGCCGAGCGTATTAGGTC-TGCCATATTGTCCAACTTCTATTGGAAAGTCCCAACCATTTCTTGAGCTCGTCGAGGTTTTAACCAGACGTCGAGTGATTT--TGTGCTGGTTGGGCAAATCTCTTTTCTCTTTC--------------------------------------------------------------------------------------------------------
#=GS SaiPod/1-214 DE RSCD01000003.1:c565613-565400 Saitozyma podzolica strain DSM 27192 scaffold_3, whole genome shotgun sequence
SaiPod/1-214                            ---------------------------------------------------------------------------------------------------CCGCAGCCGCACTAGAACTCCCCGGAATC-----------AACCC-----------ATGAAGGGCCGAGCGTATTAGGCT-TGCCAGAGCGACCTTCTG-----------TCCCTCCTATTCCTTGTCCCGG-CGCGGTATCTACCAGACGCCGGGGGATTA--TGTGCTGGTTGGACACATCGTTTTACTCACCGCCGACCACATCGCCCTGTTGAAGGGCTGAAGCC---GCCGAAAA-------CAATCCGCTGACAC---------------------------------------
#=GS CryWin/1-195 DE AWGH01000025.1:c90329-90135 Cryptococcus wingfieldii CBS 7118 supercont1.25, whole genome shotgun sequence
CryWin/1-195                            ------------------------------------------------------------------------------------------CCCAAACCGACGCAGCTG--CTAGAACTCCCCGGAATCTCCTCCATCATTCAATGCTGGAGCGGTATGAAGGGCCGAGCGTATTATGCT-TGCCATATAAACCATTTCA------------------ACCTTTTCCTTCTACCACCTATCTCTCCCG-TGGTGGGCGATTCTTTGTGCTGGTTGTGTACATTCCTCTGCTTTCCTTACCTTTCCTTA--------------------------------------------------------------------------------------------
#=GS CryAmy/1-260 DE XM_019140747.1:462-721 Cryptococcus amylolentus CBS 6039 hypothetical protein (L202_06290), mRNA
CryAmy/1-260                            -----------------------------------------------------------------------------------------------ACCGACGCAGCTG--CTAGAACTCCCCGGAATCTCCTCTATCATTCAATGTTGGAGCGGTATGAAGGGCCGAGCGTATTGTGCT-TGCCATATAAACCATTTCA------------------ACCTTTTCCTTCTACCACCTATCTCTCCCA-TGGTGGGCGATTCT-TGTGCTGGTTGTGTACATCCCTCTGCTTTCCTTACCTTTCCTTGCGTTTGCTTTTATTTCAAGAA---TGTGAAAG---AAGGACGTCAGCTGACCCTTGCGGTTTTACAGGCTGCCGTCG---------------
#=GS CryFlo/1-187 DE RRZH01000012.1:c110287-110101 Cryptococcus floricola strain DSM 27421 chromosome 11, whole genome shotgun sequence
CryFlo/1-187                            --------------------------------------------------------------------------------------------------GACGCAGCTGC--TAGAACTCCCCGGAATCTCCTCCATCATTCAATGTTGGAGCGGTATGAAGGGCCGAGCGTATTATGCT-TGCCATATAAACCATTTCA------------------ACCTTTTCCTTCTACCACCTATCTCTCCCG-TGGTGGGCGATTCTCTGTGCTGGTTGTGTACATCCCTCTGCTTTCCTTACCTTTCCTTG--------------------------------------------------------------------------------------------
#=GS CrySki/1-187 DE BCHT01000006.1:779930-780116 Cryptococcus skinneri DNA, scaffold: scaffold_5, strain: JCM 9039, whole genome shotgun sequence
CrySki/1-187                            ---------------------------------------------------------------------------------------------------CCGCAGCCGCACTAGAACTCCCCGGAAAC-----------AAAACTCC--------ATGAAGGGCCGAGCGTACGAGGTC-TGCTATAGCAAACTC--CAATGGGGTGAACCGACCTAAATCCATGTCCCGCTGCGGTATCTACCAGA-CAGCGGGGGATAA--TGTGCTGGCCGGAAACATCCTTGAATTTCAATGGGTTGATTTTACGCT----------------------------------------------------------------------------------------
#=GS TriGra/1-271 DE BCJO01000003.1:c4025439-4025169 Trichosporon gracile DNA, scaffold: scaffold_2, strain: JCM 10018, whole genome shotgun sequence
TriGra/1-271                            ------------------------------------------------GCGCGGCGTATTGCACCTTTCCAATCCACAAGTGTCGTGCTCTGCACACACCCGCAGACC-TCTAGAACTCCCCGGAAAT-------------GCC-----------ATGAAGGGCCGAGCGTATAAGGCT-TGCAAAAGTGATAT-CTGTCTTACAAACAGCAGGC--GTCTCATGCTCCAGCAACAGATCTCT-ACGTTGCTGGGGCAATAA-CGCG-TGG-----AACACTTTAACAGACTGGAAGGATTTCTATCAGGTGTGACATCTGTCTGGGCTTCACGTGTGGGCTTGTCCCTCTGTGTC-------------------------------------------
#=GS VanFra/1-191 DE BEDY01000008.1:170630-170820 Vanrija fragicola DNA, scaffold: scaffold_8, strain: JCM 1530, whole genome shotgun sequence
VanFra/1-191                            -----------------------------------------------------------------------------------------------TTTCCAGCAGCCGT-CTAGAACTTCCCGGACTACCTGTGCAACCAAGGTTGCACGGCGTCATGAAGGGTCGAGTGTATTAGGCT-TGCAACATCAAAATG------------CCCAGAACACATTACTACCCCGACTTCTACAACCCCAGGGATGTCGGGGGCCAC--AGTG-TTCCTGGCGACATTACTTTCATTTGTCGTGGTAGT------------------------------------------------------------------------------------------------
#=GS NaeEnc/1-200 DE MCFC01000022.1:c163758-163559 Naematelia encephala strain 68-887.2 BCR39scaffold_22, whole genome shotgun sequence
NaeEnc/1-200                            --------------------------------------------------------------------------------------------------CACGCAGCCGCACTAGAACTCCCCGGACCCA--------------------------CTGAAGGGTCGAGCGCAGAAGGTC-TGCAATACGAA-TCCA-----GTGGACGAACCCTCCTTTGCCGTGTCCCGATGCGGTGTTTACCAGACATTGGGGTGACTT--TGTGCTGGAGGGCGACATATCTTCCCTCTCTCTGTCCACCTTTTTTTAGTCTCCCTCATCCCACCTTTCT------------------------------------------------------------------
#=GS NaeAur/1-209 DE JAKFAO010000001.1:173350-173558 Naematelia aurantialba strain NX-20 Contig1, whole genome shotgun sequence
NaeAur/1-209                            ---------------------------------------------------------------------------------------------------ACGCAGCCGCACTAGAACTCCCCGGACCCA--------------------------CTGAAGGGTCGAGCGCAGAAGGTC-TGCAATACAAAATCCAC-----TGGACGAACCCTCTTTTGCCATGCCCCGGTGCGGTGTTTACCAGACGCCGGGGTGACTT--TATACTGGAGGGCGACATTCATTTCATCCCCTGTGCTCTGTTCATCCATGTTTTCAATGCCACGCTCTGCGTTGGCCCT---------------------------------------------------------
#=GS CryGC2/1-185 DE JALPCC010000104.1:c41299-41115 Cryptococcus sp. GC_Crypt_2 iso00_70_104, whole genome shotgun sequence
CryGC2/1-185                            ---------------------------------------------------------------------------------ACACCCCCACCCCACCCACCGCAGCTGCGTTAGAACTCCCCGGACCA------------AATAC----------ATGAAGGGCCGAGCGTATTAGGTC-TGCTACATTACTCTA------------------CATGCCCGACCTATCCGTACCCCAATCAATAACCACATTGGGTGACTT--AGTGCTGGTCGGGCACATCCCTCGTCTCGAATATCCAAATATTTAT------------------------------------------------------------------------------------------
#=GS CutCur/1-161 DE JAMALL010000007.1:190820-190980 Cutaneotrichosporon dermatis strain M4303A ctg_7, whole genome shotgun sequence
CutCur/1-161                            --------------------------------------------------------------------------------------------------ACCGCAGCCGCACTAGAACTCCCCGGACTA-----------CCCTT-----------ATGAAG-GCGGAGCGTATTAGGCC-TGCGAGAACTACCCCTCCG---------------GACTT-TCCTGTCCCGACAA----TCACCCCAGATGTCGG--GACTTCCAGTGCTGTCTGGAGACATCTTTTTATTACTGTTTCTATATGC----------------------------------------------------------------------------------------------
#=GS TreTag/1-208 DE CAJHEQ010000025.1:c27958-27751 MAG: Tremellales sp. Tagirdzhanova-0007 genome assembly, contig: TREM_25, whole genome shotgun sequence
TreTag/1-208                            ---------------------------------------------------------------------------CCGAATATGACTCCTCCTTTTCGTCTGCAGCCGGTCTAGAACTCCCCGGACAA-------------GCC-----------ATGAAGGGCCGAGCGTATTAGGTC-TGCTAAAACCACTTT-----------------CACCTCCGTCCTTATCCGTGTCCCGG--CGAGATCAAGCCGGGAGACTA--TGTACTGGACCGAGACATGTTTCCTTCTCCTCTTGTCGTACACAAGGTTCTCGTGGTGTGACTCTC----------------------------------------------------------------------
#=GS TriGue/1-192 DE BCJX01000011.1:c274793-274602 Trichosporon guehoae DNA, scaffold: scaffold_10, strain: JCM 10690, whole genome shotgun sequence
TriGue/1-192                            ------------------------------------------------------------------------------CGCGAAACGCCACATCCACCCACGCAGCCGCGTTAGAACTCCCCAGGATT----------GCCTTGTGCG-------ATGATAGGCGGAGCGTATTAGGCT-TGCAATATCAACGTTTC---------TTTCTCCCGAACTATCAATGTCCCAGTCGTG-ATCTTCCCGCGGCTGGGGGCA-----GTAGATCTCGAGTACATTTCTCCTCCTCTCACTACACTC------------------------------------------------------------------------------------------------
#=GS VanHum/1-164 DE QKWK01000002.1:1856088-1856251 Vanrija humicola strain CBS 4282 CBS4282_scaffold02, whole genome shotgun sequence
VanHum/1-164                            ------------------------------------------------------------------------------------------------ACCCTGCAGCCGCTCTAGAACTCCCCGGACTA-----------TCCTT-----------ATGAAGGGCCGAGCGTATTAGGCT-TGCGAGAGCAACTCCGGGCATGGGGACCC---------TTCGTGTTCCGCGGCGCTGG--AACGGCATCGCGGGCGGTCC-------CTCCCCCGGCACATCCCGGCCCCGCGTTTTGTGT--------------------------------------------------------------------------------------------------
#=GS ApiBra/1-208 DE JAMALJ010000010.1:c87111-86904 Apiotrichum brassicae strain M2204 ctg_10, whole genome shotgun sequence
ApiBra/1-208                            ----------------------------------------------------------------------------------------------TTCCCACGCAGCTGCTCTAGAACTCCCCGGAACT-------------GTC-----------ATGAAGGGCCGAGCGTATAAGGCC-TGCAATAGCAAATAC----------ACCGCG----TATCATTTAACCCCCTGCCAACTTGATTATACGTTGGCTCGGAT----CGATATCGCCAAGAACATGTCCAAATATCATTATTGTGATGGACACTGACTCCAGGCCGCCGTTGCCCGCATGTCGGCCCTC------------------------------------------------------
#=GS TreMes/1-193 DE AFVY01000358.1:6420-6612 Tremella mesenterica DSM 1558 strain Fries TREMEscaffold_15_Cont358, whole genome shotgun sequence
TreMes/1-193                            -----------------------------------------------------------------------GCCGACTCTCATCAACTCACTCCCCTGCCCGCAGCCACGTTAGAACTCCCTGGAGTC-------------ACC-----------ATGAAGGGC-GAGCGTATTAGGTC-TGCCATATTG---------------------AGACAT--CTCCACCTTTATCCGCTTCTTGTCAATTGTTGACTCGGTGCTA-TGTGCTTGGTGGAGACATTCTATCCTCTGTTCAGTCTGTTTCACGTTGATT-------------------------------------------------------------------------------------
#=GS CutDas/1-208 DE BEDX01000005.1:c1739627-1739420 Cutaneotrichosporon daszewskae DNA, scaffold: scaffold_5, strain: JCM_11166, whole genome shotgun sequence
CutDas/1-208                            -----------------------------------------------------------------------CCCCGTGAGTCTCTTCACAAACACTTTCCCGCAGCCGC--TAGAACTCCCCGGAAGC------------ACTC-----------TTGAAGGGCCGAGCGTACTTGGCT-TGCAACAGCA---------------ACCCC-AGACATACCATGCCCCGACTGTTTCTGTACTCCAATGCGTCGGGGGCAATAT--TGTCTGG----GACATCTTTCCTTCTCGGACTCTTGCTAATCTCAGGCCGCCGTCGCCCGCA------------------------------------------------------------------------
//

• Image source 3.1:

# STOCKHOLM 1.0
#=GF RW van Nues, September 2023
#=GF https://coalispr.codeberg.page/paper
#=GS HACAcnag12223/1-198 DE in-T1-ncrna-198nt_as-5end-of-CNAG_12223 ncrna 3:140543-140740:1
HACAcnag12223/1-198         ----------------------------------------------------------ATCTACA-CCCGACGATGACGCCATGCTA---------CCCCGA-----------TAGCTTCGCTGTCTCTCACC---------GTCATT--CATGCCAATCACCCGATTGGTGAGGAAAAGATA-------CGGCC-AATGG-TGTTTGAGAGCGAAA--CCTGCACAACGCAGCGTGTCTTGAGTACGCCTAGCTCT-----TACTCCT---------AGTGGGTGT-GGCGTAATTGGACA---ACGAGACATCTC--------
#=GS H99/1-199 DE CP003822.1:149452-149650 Cryptococcus neoformans var. grubii H99 chromosome 3, complete sequence
H99/1-199                   ----------------------------------------------------------ATCAACACCCCGACGACGACGCCAGGCTA---------CCCCCA-----------TAGCTTCGCTGTCTCTCACC---------GTCATT--CATGCCAGTCACCCGATTGGCGAGGAAAAGATA-------CGGCC-AAAGG-TGTTTGAGAGCGAAA--CCTGCACAACGCAGCGTGTCTTGAGTACGCCTAGCTCT-----TACTCTT---------AGTGGGTGT-GGCGTAATTGGACA---ACGAAACATCTC--------
#=GS CNAG_12223/1-230 DE XR_001045520.1:1-230 Cryptococcus neoformans var. grubii H99 hypothetical RNA (CNAG_12223), ncRNA
CNAG_12223/1-230            ---------------------------AGTCGATCCTCTCTCCTTCCCTTTCTTTTTCATCAACACCCCGACGACGACGCCAGGCTA---------CCCCCA-----------TAGCTTCGCTGTCTCTCACC---------GTCATT--CATGCCAGTCACCCGATTGGCGAGGAAAAGATA-------CGGCC-AAAGG-TGTTTGAGAGCGAAA--CCTGCACAACGCAGCGTGTCTTGAGTACGCCTAGCTCT-----TACTCTT---------AGTGGGTGT-GGCGTAATTGGACA---ACGAAACATCTC--------
#=GS R265/1-200 DE CP025759.1:c2071957-2071758 Cryptococcus gattii VGII R265 chromosome 1, complete sequence
R265/1-200                  ----------------------------------------------------------ATCAACACCCCGACGACGACGCCATGCTA---------CTCCGA-----------TAGCTTCGCTGTCTCTCACC---------GTCATT--CCTGCCAATCACCCGGTTGGTGAGAGAAAGATA-------CGGCC-AATGG-TGTTTGAGAGCGAAA-CCCTGCACAACGCAGCGTGTCTTGAGTATGCCTAGCTCG-----TACTCCT---------TGTGGGTGT-GGCGTAATTAGACA---ACGAGACATCTC--------
#=GS WM276/1-200 DE CP000288.1:c1829291-1829092 Cryptococcus gattii WM276 chromosome C, complete sequence
WM276/1-200                 ----------------------------------------------------------ATCAACACCCCGACGACGACGCCATGCTA---------CTCCGA-----------TAGCTTCGCTGTCTCTCACC---------GTCATT--CCTACCAATCACCCGATTGGTGAGGGAAAGGTA-------CGGCC-AATGG-TGTTTGAGAGCGAAA-CCCTGCACAATGCAGCGTGTCTTGAGTACGCCTAGCTCG-----TACTCCT---------TGTGGGTGT-GGCGTAATTAGACA---ACGAGACATCTC--------
#=GS CryGC5/1-250 DE JALPBZ010000094.1:33500-33719 Cryptococcus sp. GC_Crypt_5 iso00_58_94, whole genome shotgun sequence
CryGC5/1-250                -------------------------------------CTATCTCTTGAATGTTCTTACCAAGACA-CCCGACGACGACGCCTCGCTAT-----CTCTCCAGAGTCCCTC---ATAGCATCGCAGTCTCTCCCCGCCGACCGTGTCGTCGACGAGACGACTCGTCGACTCGT--CAACGATATCAGCAGCGCGGGC-AACGGTGTCCTGCGATCAACTATTCT-TTT-AGGT--CGTGTCTTGAGTACGCCTAGCTCT----TTTATTAAT--------AGTGGGTGT-GGCGTAATTAGACA---ACGGGACATCTATC------
#=GS CryGC3/1-220 DE JALPCB010000026.1:91640-91859 Cryptococcus sp. GC_Crypt_3 iso00_45_26, whole genome shotgun sequence
CryGC3/1-220                -----------------------------------------------------CTTACCATGACA-CCCGACGACGACGCCTCGCTAT-----CTCATCAGAGTGAAATCC-ATAGCATCGCAGTCTCTCCCCGCCGACCGTGTCGTTGAC----------------TCGT--CAACGATATTAGCAGCGCGGGC-AACGGTGTTCTTCGATCAACTATACT-TTT-AGGT--CGTGTCTTGAGTACGCCTAGCTCT---TTTTATCTCT--------AGTGGGTGT-GGCGTAATTAGACA---ACGGGACATCTAT-------
#=GS CryGC7/1-221 DE JALPBX010000030.1:116521-116741 Cryptococcus sp. GC_Crypt_7 iso00_79_30, whole genome shotgun sequence
CryGC7/1-221                -------------------------------------------TTTGTTGTGTTCTGACAAGACA-CCCGACGACGACGCCTCGCT-T-----CTCACCCGAGTACCACCA-ATAGCTTTGCAGTCTCTCCCCGCCGACAGTGTCGTT--------------------------AGCGACATGA-CTGCGCGGGT-AAAGGTGTTGTGCGATCAATTATATT-TTT-AATT--CGTGTCTTGAGTACGCCTAGCTC----TTTTAACAGTT--------GTGGGTGT-GGCGTAATTAGACA---ACGGGACATCTCAAC-----
#=GS CryVH5/1-212 DE JANBXI010000088.1:58800-59011 Cryptococcus sp. VH57_BW 88, whole genome shotgun sequence
CryVH5/1-212                -------------------------------------------------------GTCCACAACA-CCCGACGACGACGCCCCGCT-----------CCCCCAT----------AGCCCCGCAGTCTCTCACCGCCC-------------TCGCCCCTCCCCC-------GGGAGCCGGCCAGCGCT--GCGGCC-AACGG-TGTTGTCGAGCAACCC-ACTGATCTTTTCAGCGTGTCTTGAGTACGCCTAGCTCGTCTGCGAACAGCATTCTCCAACGTGGGTGT-GGCGTAATTAGACT---ACGATACAGCTTC-------
#=GS BulAlb/1-215 DE CAMYTR010000136.1:311840-312054 Bullera alba genome assembly, contig: jcf7180000012237, whole genome shotgun sequence
BulAlb/1-215                ---------------------------------------------------------CAACAACA-CCCGACGACGACGCTTGGCT------TCTTAACCGACTCGAT------AGCTTCGCAGTCTCTCACCCCCCATCGCATCAAT-----TCTCTC-----------GGGAATGGAATTCGGTTGGACGGGCCAATGG-TGTTGGAGAAGGAATAGTCTTATT---ACGGCGGGTCTTGAGTACGCCTCGTTC---TACCTAATACAAAAC-----GTGGACC-GGGCGTAATTAGACA---CCGTCACATTCA--------
#=GS CryWin/1-221 DE AWGH01000002.1:1158656-1158876 Cryptococcus wingfieldii CBS 7118 supercont1.2, whole genome shotgun sequence
CryWin/1-221                ----------------------------------------------------------ATCAACA-CCCGACGACGACGCCACGCTCTA--------CCC-----------TATAGCCGCGCTGTCTCTCCCC---------GTCTGATCGGACTGTCCCAGTTTCGGCTGGGGCTCTTTCGGT-TCGCGCGGGT-AATGGTTGTTGGAGAGCGAAAAGACTGCAAAA-GCAGCGGGTCTTGAGTACGCCTAGCTCTGCCCCTC-TCTT-GGGGGGCTGGTGGGCGT-GGCGTAATTAGACA---TCGAAACATATC--------
#=GS CryAmy/1-219 DE MEKH01000001.1:2131266-2131484 Cryptococcus amylolentus CBS 6273 supercont2.1, whole genome shotgun sequence
CryAmy/1-219                ----------------------------------------------------------ATCAACA-CCCGACGACGACGCCACGCTCTA--------CCC-----------TATAGCCGCGCTGTCTCTCCCC---------GTCTAATCGGATTGTCCCAGTTTCGGCTGGGGCTCTTTCAGT-TTGCGCGGGT-AATGGTTGTTGGAGAGCGAAAAGACTGCAAAA-GCAGCGGGTCTTGAGTACGCCTAGCTCTGCCCCTCTCTTT-GGGGGGCTGGTGGGCGT-GGCGTAATTAGACA---TCGAAACAT-----------
#=GS CryFlo/1-221 DE RRZH01000002.1:2265607-2265827 Cryptococcus floricola strain DSM 27421 chromosome 2, whole genome shotgun sequence
CryFlo/1-221                ----------------------------------------------------------ATCAACA-CCCGACGACGACGCCACGCTCTA--------CCC-----------TATAGCCGCGCTGTCTCTCCCC---------GTCTGATCGGATTGTCCCAGTTTCGGCTGGGGCTCTTTCGGT-TCGCGCGGGT-AATGGTTGTTGGAGAGCGAAAAGACTGCAAAA-GCAGCGGGTCTTGAGTACGCCTAGCTCTGCCCCTC-TCTT-GGGGGGCTGGTGGGCGT-GGCGTAATTAGACA---TCGAAACATATC--------
#=GS CrySki/1-204 DE BCHT01000001.1:1595276-1595479 Cryptococcus skinneri DNA, scaffold: scaffold_0, strain: JCM 9039, whole genome shotgun sequence
CrySki/1-204                --------------------------------------------------------TCACCAACA-CCCGACGACGACGCCTCGCTAT--------CCACTCA--------GTAAGCCCAGCAGTCTCTCCCC---------GTCCTTCCAGCTCATCGAAAGATGGTTCTCGAATCTT-----------CGGGT-AACGG-TGTTGGAGATGAAAAATC----TTTGATATCCGCGTCTTGAGTACGCCTCGCTC-----TTCATTTGAT--------GTGGGTT-GGGCGTAATTAGATGA--TCGGGACATATTAT------
#=GS KwoMan/1-206 DE ASQF01000020.1:243773-243978 Kwoniella mangroviensis CBS 8886 cont1.20, whole genome shotgun sequence
KwoMan/1-206                --------------------------------------------------------AACATAACA-CCCGACGACGACGCTTCGACT-------CCTCCTTCAAT---------AGCTTAGCAGTCTCTCACC---------GTCAATCCACTCATTCTCATGGG--TGAGCGATA--------------CGGGT-AAAGGTGGTTTTATCGATCAAT---AGTCAAACAAT-CGGGTCTTGAGTACGCCTCACTC--TTTCTTCATACTTTTT-----GTGGGTC-GGGCGTAATTAGATCAATACGGTACATCTC--------
#=GS PapLau/1-200 DE JDSR01000634.1:c15108-14909 Papiliotrema laurentii RY1 contig_655, whole genome shotgun sequence
PapLau/1-200                ----------------------------------------------------CAACCATCCAACA-CCCGACGACGACGCCC----------TTCTGCCTCGATCGAT----------CCGCTGTCTCTCCCCTCCGCCCGCCTCTGCCATCTCGATGGACGGGG--ACGGGAGC---------------AGGGT-AACGG-TGTTGGAGAGTGA-------CCTTT-----GCGTGTCTTGAGTACGCCGCGTTT--CGATATAATTTCAAGAC----ATGGACGTAGGCGTAATTAGACA---ACGCGACA------------
#=GS PapTer/1-188 DE JAHXHD010000570.1:25072-25259 Papiliotrema terrestris strain LS28 scaffold-569, whole genome shotgun sequence
PapTer/1-188                -------------------------------------------------------ACCACCCACA-CCCGACGACGACGCTC---------TCGCTATCTCACATAGTC---------TTGCAGTCTCTCCCCT-------TCTCATTCGATTCTTCGGAACTGG--ACGAAGCG---------------AGGGC-AACGG-TGTTGAAGA-CGAACGAA----------CAACGTGTCTTGAGTACGCCCCGCTC-----TACCTTTGAAC-------GTGGGCGAGGGCGTAATTAGACT---ACGCGACAT-----------
#=GS TakTep/1-231 DE BCKS01000004.1:c76924-76694 Takashimella tepidaria DNA, scaffold: scaffold_3, strain: JCM 11965, whole genome shotgun sequence
TakTep/1-231                -------------------------------------------------TTCTTTCTTCACGACA-CCAGACGACGACGCCTTGCT-TTGG--TCTTTTGACAAACC-GTCAACAGCACAGCAGTCTCTCATTTCCTCC--TCTTTCTCCCCCTTCCATAGGGTATCTCCTTGAAGGAGGA---------CGAAAAAACGG-TGCCC-AGAG--CAAGCACACT---------CGCATCTTGAGTACGCCTCACTC----TTTCTAAAGGT--------GTGGGTC-GGGCGTAATTAGATG---ACGAAACATCTCTCCTCATC
#=GS VanHum/1-204 DE QKWK01000013.1:495750-495953 Vanrija humicola strain CBS 4282 CBS4282_scaffold13, whole genome shotgun sequence
VanHum/1-204                -----------------------------------------ATTCTTGATGTTTTTCTCATCACA-CCAGACGACGACGCCTTGCC-------GACAACAAGGTA---------GGCTTGGCTGTCTCTCAC---------TCTCCGGACAGTATCCGTTCATCGAATAGCTGCGGC-------------TGAGA-AACGG-TGTCA-CGATA--AAGCTCATCAGCTT----CGTGTCTTGAGTACGCCTAGTTC------TTCTTTC----------GTGGGCT-GGGCGTAATTAGACA---ACGGGACA------------
#=GS ApiBra/1-211 DE JAMALJ010000021.1:289289-289499 Apiotrichum brassicae strain M2204 ctg_21, whole genome shotgun sequence
ApiBra/1-211                -----------------------------------------------TCTTTCTTCTTCACAACA-CCAGACGACGACGCTTTGCTTGCAACCTCCATTTGCATCTTGCCCAACCGCTTGGCTGTCTCTCACCC-------TCCGTGGTTTTT------------ACACCGTGCGA--------------CGGGAATACGG-TGTCG-CGAG--CAAGCTCTTC--T------CGTGTCTTGAGTACGCCTCGTTC---TTTTTTTATCTTC-------GTGGGCT-GGGCGTAATTAGACA---ACGGGACAAGTAA-------
#=GS CutOle/1-234 DE QKWL01000005.1:1610615-1610865 Cutaneotrichosporon oleaginosum strain ATCC 20508 ATCC20508_contig05, whole genome shotgun sequence
CutOle/1-234                CCACACAACCGCAGGGAACTGCTCCAACTCGAGATCTGCGTTTCTTCTGTTGTTAAACCATTGCA-CCAGACGACGACGCCTCTGC---------TCCTCCCTCAC--------GCTTTGGCTGTCTCTCACCC--------TCACG------------TCCTTGTGACTTCGC----------------TGGGA-AAAAG-TGCTT-CGAAT--GAGCCTGCGC-----AACCGAGTCTTGAGTACGCCTTGCTC-------TCCCTT----------GTGGGCC-GGGCGTAATTTGACA---ACGGTACATGGCCC------
#=GS TriInk/1-221 DE QAYW01000484.1:949-1169 Trichosporon inkin strain C-2155 NODE_484_length_1219_cov_2.48511_ID_230227, whole genome shotgun sequence
TriInk/1-221                --------CGGCGCAGTGGTTCCCTCAACAACTGCGAACTTGG-TTTGTCAGTCATCATATTACA-CCAGACGACGACGCCTTGTT---------CCTCGTCTTCT--------GACAGGGCTGTCTCTCACCC----------ACCGACACC--------------AGGTCGTT---------------CGGG--AACCG-TGT---AGAGAGCGAGA-----TTT------CGGGTCTTGAGTACGCCTCGTTC----TGACGTTTGTCCT------GTGGGCC-GGGCGTAATTAGATC---ACGAAACATGAAC-------
#=GS TriOvo/1-217 DE JXYN01000005.1:c730972-730756 Trichosporon ovoides strain JCM 9940 scaffold_0005, whole genome shotgun sequence
TriOvo/1-217                --------GTCTCGCTCGATATGATTATTTGATCGCACTACAGTTCGCTGTTTCTATCCAGTACA-CTAGACGACGACGCCTTGT----------TCTACACTCT---------GGCATGGCTGTCTCTCACC---------TCCCG---------ACTCTCTTGGGTCGG-------------------TGCGG-ATTCG-TGT---AGAGAGAGA-------TTT------CGGGTCTTGAGTACGCCTCGCTCTGA-----TA----------TCAGTGGGCAGGGGCGTAATTAGATC---ACGGGACATGAGC-------
#=GS CutDer/1-217 DE BCKR01000004.1:1493310-1493526 Cutaneotrichosporon dermatis DNA, scaffold: scaffold_3, strain: JCM 11170, whole genome shotgun sequence
CutDer/1-217                ------------------------TTAACTTCGCGACGTATCGTTGATACAAGGATCTTCATGCA-TCAGACGACGACGCCT-----------------AA-----------------GTGTTCTCTATCACC-------TTGGCAGTCTCTCCCC--CTATTCTGTCTTCATGGCATGTT---------TGGGA-AACGG-TGC-GGCGAGTGAA--CCTTCGGTT-----CCGGGTCTTGAGTACGCCTTGCTC------TACCTCTC---------GTGGGCC-GGGCGTAATTAGATC---ACGGTACAAGATTTGCAA--
//

• Image source 3.2:

# STOCKHOLM 1.0
#=GF RW van Nues, September 2023
#=GF https://coalispr.codeberg.page/paper
#=GS H99_HACAcnag01565-1/1-232 DE 11: [300,191 - 300,423] (+232) >CP047912.1:306177-306408 Cryptococcus neoformans var. grubii H99 chromosome 11
H99_HACAcnag01565-1/1-232           --------------------------AACCGAGCTTAGACACGTCGGCGGCCACTA------TCCCACGCTGCCGATGTCACAGCTATCGGAAGATCAAA-CCCCTCTCGTTCATGGTAGCTTCCCTCGACTATCTTCAACCTTGCCGTCATTTTGATCGGCGAGGTGTGGGTAGTCAGTC------------------------------------------------------------ACCTTTTACTTTTTTTTGGCTTCGAGAAGCTTACTATGAAGCCTTCTCCTACTT------------------------------------------------------------------------CATGGTGCTCCTC---AACGA-------GAAAGACATCTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS HACAcnag01565-1/1-217 DE 3:227719-227935:1
HACAcnag01565-1/1-217               --------------------------AACCGAGCTTAGACACGTCGGCAGCCAATTA------TCCACGCTGCCGATGTCACAGCTATCGGAAGATCAAA--CCCTCTCGTTCATAG-AGCTTTCCTCGACCAATCTCAACCTTGCCGTCATTTCGATCGGCGAGGTGTGG-TAGTCACC--------------------------------------------------------------------TCTTTTTTTGGGCCCTGGGAAGCTTACTATGAAGCCTTTTCCCACTT------------------------------------------------------------------------CATGGTGTTCCTCT--------------ACGAGACATTCC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS R265-1/1-228 DE CP025769.1:288545-288772 Cryptococcus gattii VGII R265 chromosome 11, complete sequence
R265-1/1-228                        --------------------------AACCGAGCTTAGACACGTCGGCAGCCGTTA-------TCCACGCTGCCGATGTCACAGCTATCGGAAGATCAAAACCTCTCTCGTTCATA-TAGCTTCCCTCGACTATCTTCA-CCTTGCCGTCATTTCGATCGGCGAAGTGTGGTTAGTCACC-----------------------------------------------------------------------TTTTTTTCTTTCCTGGAAGCTTATTGTGAAGCCTTTGCCCACTT------------------------------------------------------------------------CATGGTGCTAT-----ACCCA-------ACGGGACATTTACCTCAACTTAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS WM276-1/1-218 DE CP000288.1:289952-290169 Cryptococcus gattii WM276 chromosome C, complete sequence
WM276-1/1-218                       --------------------------AACCGAGCTTAGACACGTCGGCAGCCGTTA-------TCCACGCTGTCGATGTCACAGCTATCGGAAGATCAAA-CCCCTCTCGTTCATA-TAGCTTCCCTCGACTATCTTCA-CCTTGCCGTCATTTCGATCGGCGAGGTGTGGTTAGTCAAAAAGAA----------------------------------------------------------------------TTTCTTTCCTGGAAGCTTGTTGTGAAGCCTTTGCCCACTT------------------------------------------------------------------------CATGGTGCTAT-----ACCCA-------ACGGGACATCTAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS H99_HACAcnag01565-2/1-248 DE 11: [300,578 - 300,826] (+248)
H99_HACAcnag01565-2/1-248           -----GGATTATTAATCATCATCCGAACCCGAGCTTAGACACGTCTGCAGCCTACCC--TTTTCCCCCGCTGCCGATGTCACAGCTATCGGAAGACCGAAATTTATATCGCAAA-TTGCTCGCTTCGTTCGTGATAGTGCTTTCGGGCCTACTTGGGAAATGTTTACTGTGCTTC--------------GGTACAGTGGCAGGTCCCCACGAGGCATA-----------------------------------------------CATAGG-TAGCAAGAATCTTTCACCTTCT-----------------------------------------------------------------------AGCTCGGGCAAATT-----------------GCGGACACAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS H99-2/1-230 DE CP003830.1:300600-300829 Cryptococcus neoformans var. grubii H99 chromosome 11, complete sequence
H99-2/1-230                         --------------------------ACCCGAGCTTAGACACGTCTGCAGCCTACCC--TTTTCCCCCGCTGCCGATGTCACAGCTATCGGAAGACCGAAATTTATATCGCAAA-TTGCTCGCTTCGTTCGTGATAGTGCTTTCGGGCCTACTTGGGAAATGTTTACTGTGCTTC--------------GGTACAGTGGCAGGTCCCCACGAGGCATA-----------------------------------------------CATAGG-TAGCAAGAATCTTTCACCTTCT-----------------------------------------------------------------------AGCTCGGGCAAATT-----------------GCGGACACATCAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS pre-HACAcnag01565-2/111-360 DE 3:227972-228331:1
pre-HACAcnag01565-2/111-360         AGCCATAATTTATCATTATTATCCGAACCCGAGCTTAGACACGTCTGCAGCCTACCC--TTTTCCCCCGCTGCCGATGTCACAGCTATCGGAAAACCAAAATTTCTATCGCCAAA-TGCTCGCCTCGT-CGTGGTGGTCTTTTCGGGCCTACTCGGGAAATGTTTACTGTGCTTC--------------GGTACAGTGGCAGATCCCCACGAGGCATA----------------------------------------------------CAGAGCAGGAACCTTTCACTTTCT-----------------------------------------------------------------------AGCTCGGGCAAATT-----------------GCGGACACATCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS HACAcnag01565-2/137-360 DE 3:228108-228331:1
HACAcnag01565-2/137-360             --------------------------ACCCGAGCTTAGACACGTCTGCAGCCTACCC--TTTTCCCCCGCTGCCGATGTCACAGCTATCGGAAAACCAAAATTTCTATCGCCAAA-TGCTCGCCTCGT-CGTGGTGGTCTTTTCGGGCCTACTCGGGAAATGTTTACTGTGCTTC--------------GGTACAGTGGCAGATCCCCACGAGGCATA----------------------------------------------------CAGAGCAGGAACCTTTCACTTTCT-----------------------------------------------------------------------AGCTCGGGCAAATT-----------------GCGGACACATCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS R265-2/1-231 DE CP025769.1:288888-289118 Cryptococcus gattii VGII R265 chromosome 11, complete sequence
R265-2/1-231                        --------------------------ACCCGGGCTTAGACACGTCTGTAGCCTACCCA-TTTTCCTCCGCTACCGATGTCACAGCTACCGGAAGACCAAAATTTTCATCGCGAAATTGCTCGCTTCGTTGTCGTT--TGCTTTCGGGTCTACT-TGGAAATGTTCACTGTGCTTA--------------GGTGCAGTGGCATTTCCCAACGAGGCATG--------------------------------------------------CGTACTGGAGGGAGCCTTCACTTTCT-----------------------------------------------------------------------AGCTCGAGCAAATT-----------------GCGAACACATCTCTAGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS WM276-2/1-229 DE CP000288.1:290293-290521 Cryptococcus gattii WM276 chromosome C, complete sequence
WM276-2/1-229                       --------------------------ACCCGGGCTTAGACACGTCTGTAGCCTACCCATTTTTTCTCCGCTACCGATGTCACAGCTACCGGAAGACCAAAATCTTTATCGCAAAATTTCTTGCTTCGTTGTCGTT--TGCTTTCGGGTCTACCTTGGAAATGTTCACTGTGCTTA--------------GGTGCAGTGGCAGTTCCCAACGAGGCATG--------------------------------------------------CGTACTAGGGGGAGTCTTCACTTTCT-----------------------------------------------------------------------AGCTCGAGCAAATT-----------------GCGGACACATTTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS CryGC5/1-382 DE JALPBZ010000020.1:c96239-95858 Cryptococcus sp. GC_Crypt_5 iso00_58_20, whole genome shotgun sequence
CryGC5/1-382                        ------------------AGGCGACGTACCGAGCTTAGACACGTCAGCAGCCAC-------TTCCTACGCTGCTGATGTCACAGCTATCGGAAGAGCAA-CCTTTCTACGTCTTCTACTGTAATAGTAGACTGTAGACGTAGAACGTAG-ACGTACCATAGCCC----GTGTACTGCACCCTCTCTCCTGGTGTC-------CTCCAATTGGAGTTGG---------------------------------------CTGGGAGATGA-GAGCCGTACGACGTTTCTCTTCTATTCT------------------------------------------------------------GCG-AAAGGGGAACGGAGGGTAT--------------GGCGCGATACATCTTTTCGTCTTTTCGTACTTTC-------GTCCTGCTGTACTTTACATAGA---TAGCACTGA-AGCGAGCAGACACATATGCACTGCATGACATGACATGCATTATCTGCTGTGCCCGGATAGACTGGCTGACTATATT---------------------------------------------------------
#=GS CryGC3/1-374 DE JALPCB010000082.1:7767-8140 Cryptococcus sp. GC_Crypt_3 iso00_45_82, whole genome shotgun sequence
CryGC3/1-374                        ------------------AGGCGACGCACCGAGCTTAGACACGTCAGCAGCCAC-------TTTCTACGCTGCTGATGTCACAGCTATCGGAAGAGCAA--------CCGTT----ACT-CCTACTTCTACTCCATA-GTAGATCGTAGAACGTACCATAGCCC----GTGTACTGCATCCTCTCTCCTGGTGTC-------CTCCGATTGGAGTTGG---------------------------------------CCGGGGGATGA-GAGCCGTACGACGTTTCTCTTCTATTCA------------------------------------------------------------GC-TACAGGGGAACGGAGGGTAT--------------GGCGCGATACATCTTTCTGTACTTTCGCACTTTC---------------GTACTTTACATAGCACATCTCACTGAAAGCGAGCAGACACGCATGGCATGCATTATCTGCAGTACCCGGTTGGACTGGTTGACTATAATAGACTATACTTCATATACCTGA-------------------------------------------------
#=GS CryGC7/1-374 DE JALPBX010000033.1:c109824-109451 Cryptococcus sp. GC_Crypt_7 iso00_79_33, whole genome shotgun sequence
CryGC7/1-374                        ------------------GCATCTTATACCGAGCTTAGACACGTCAGCAGCCA-------TTTTCTACGCTGCTGATGTCACAGCTATCGGAAGAGCAA------CTTTGTC----------TACTTTTGAT-----TGTAGAT-----AACGTGACATAGCCC---TTTGTACTGCATCCTTCTGTCCGGTGTC-------CTCCAATTGGAGTTGG---------------------------------------CCAGGAGATGAAGAGCCGTACGACCTTTCCCCTCTAACTC----------------------------------------------------------------TAGGAGAAACGATGGGTAT--------------GGCGCGATACATCTTTTCGTACCTTATATAGCAC-TTGAAAGTGGTAGAACACGAATGCACTGCATGATTCGATATTCCGGATGTTCTTCTACCATTATTCGCA-CAGCTACTTTACTATACTTCATATATATCCGAATTAGTCTCATGCCCTGGTAGAT-------------------------------------------------
#=GS CryGC2/1-380 DE JALPCC010000024.1:c135227-134848 Cryptococcus sp. GC_Crypt_2 iso00_70_24, whole genome shotgun sequence
CryGC2/1-380                        ----------------CCCCCTCCCCACCCGAGCTTAGACACGTCGGCAGTTGTTA------TCCCACACTGCAGATGTCACAGCTATCGGAAGATCAATATCCCACCTCTC--CGCCTCGGACCTCTTGTTC---TTGTACTCTGTA--CCACTACAACGTCC--GAGTCGTCTGTCCTGATTTATTTTCACAGGACCAGATGCGGGGAAGTGGGGA--------------------ACACACCGTACTTGTCGGACAGAACGTGGACTTTCTTGATGAGACAATCATGTTCC-------------------------------------------------------------GGAAAAACAGTCATATACATGAATCACTATATTCTTCACTTTGTGAAACAACTTGCAGGTCAACACATATATCATTGACATGACTGAGTCTCAAGGTACTATCTGAGACCTTACATGCGTATAGTGAAGATAATGCA---------------------------------------------------------------------------------------------------------------
#=GS TriInk/1-372 DE QAEE01005639.1:321-692 Trichosporon inkin strain ATCC 18020 NODE_5722_length_1223_cov_5.10297_ID_88158, whole genome shotgun sequence
TriInk/1-372                        ---------------------TCAGAACCCGAGCTTAGACACGTCGGCAGTCT------TTTTCCCCCACTGCAGATGTCACAGCTATCGGAAGAGCAA-CCTTTTCTTGTG----TGCGGGTG-TG----TG-TCTGGCTCTCGGGCC-------------------------------------------------------------------------------------------ATTCGCTCACTTCGCTGGGAGATGTGGCGTCTTCGGATGACTGCTCCTGCCCT-----------------CTGC--TTTCACAACCTGGTTTAG---------GGCCGCACACT----------------------CGTCGAGTACAT-TCAATAGTGATACATGAGGTGGATGGATTATATGCCCTACTAGCCCAGAACAAGTGAAGTACGCGCGTTACTTCTTCTTGCTGCCCCTCTTGAGCCCGTAGTACCCGTTGAACGCGATACGGATCGCGAGGAACCGCACATCGAGGTCCGGGTGCGCGCCCGC---------------------------------------------------
#=GS TriAsa/1-379 DE SCGW01000755.1:5373-5751 MAG: Trichosporon asahii isolate N5_275_008G1 N5_275_008G1_scaffold_1051, whole genome shotgun sequence
TriAsa/1-379                        ----------------CCATAGAACCACCCGAGCTTAGACACGTCGGCAGTCTTC------TTCCCCCACTGCAGATGTCACAGCTATCGGAAGAACAAAA-CCTTCAAGTG----TGCGGGTG-TG----TG-TCTGGCTTTCGGGCC-------------------------------------------------------------------------------------------ATATGCTCACTTCGCTGGGAGATGTGGCGTCTTCGGATGACTGCTCCCGCCCT-----------------GCGTCCTTTAACTCGTAGACGCAG---------GGCCGCGCACT----------------------CGTAGGGTACAT-TCGATAGAAATACATGAGATGGATTATACGCTGTTGTGCTACTGTACGCTGCTGCTCTACTTCTTCTTGCTGCCCCTCTTGAGCCCGTA--GTACCCGTTGAACGCAATG---------CGGATCGCGAGGAACCGCACGTCGAGGTCCGGGTGCGCGCCAGCCTCCTTGCAGA----------------------------------------
#=GS TriCor-a/1-378 DE JXYL01000030.1:330534-330911 Trichosporon coremiiforme strain JCM 2938 scaffold_0030, whole genome shotgun sequence
TriCor-a/1-378                      ----------------CCATAGAAACACCCGAGCTTAGACACGTCGGCAGTCTTC------TTCCTCCACTGCAGATGTCACAGCTATCGGAAGAACAAACCCCTTCAAGTG----TGGGTGTG-TG----TG-TCTGGCTTTCAGGCC-------------------------------------------------------------------------------------------AGATGCTCACTTCGCTGGGAGACGTGGCGTCTTCAGATGACTGCTCCTGCCCT-----------------GTGTCCTTCT-CTTGTAGACACAG---------GGCCTCGCGCT----------------------GGTAGGGTACATTTCGATAGTGATACATGAGATGGATTATACACTGTTGTGCTACTATACACTGCCTGCTACCAGCTGCGCTACATCTTCTTGCTGCCCCTCTTGAGCCCGTAGTACCTGTTGAACGTGATGCGGATGGTGGGGAACCTGACGTCAAGGTCCGGGTGTGTAAAA-----------------------------------------------------
#=GS TriCor-b/1-274 DE JXYL01000004.1:1157678-1157951 Trichosporon coremiiforme strain JCM 2938 scaffold_0004, whole genome shotgun sequence
TriCor-b/1-274                      -------------------------CACCCGAGCTTAGACACGTCGGCAGTCTTC------TTCCTCCACTGCAGATGTCACAGCTATCGGAAGAACAACCCCCTTCAAGTG----TGCGGGTG-TG----TG-TCTAGCTTTCGGGCC-------------------------------------------------------------------------------------------AGATGCTCACTTCGCTGGGAGATGTGGCGTCTTCGGATGACTGCTCCCGCCCT-----------------GCGTCCTTCT-CTCGTGGACGCTA---------GGCCGCACGCT----------------------CGTAGGGTACATTTCGATAGTAATACATGGATGAATTATACGCTGTTGTGCCACTATACGCTGCTGCCCTGCTTCTTCT----------------------------------------------------------------------------------------------------------------------------------------------------
#=GS TriGue/1-376 DE BCJX01000001.1:c2001271-2000896 Trichosporon guehoae DNA, scaffold: scaffold_0, strain: JCM 10690, whole genome shotgun sequence
TriGue/1-376                        ----------------CCCTCTCCACACCCGAGCTTAGACACGTCGGCAGCCCCA-------TCCTCCGCTGCAGATGTCACAGCTATCGGAAGAACAAGCCTCCCGTACCTCACCTGC----CCTGCTCCCG----TGCCGCCG------------------------------------------TACACGTACG--CGCGGGACGGGCGCGGGGC---------------------GCCGCTCGCGCGCCGCTGCAACGCACGCTTGAGTATGGTGACCGCGGGACA-----------------------------------------------------CTCGTCCGCCTAGAGTGGTTA---TTTAAGAAGCATTGTCTATATTCATCCTCTTGCACAGGCTCCAATACCATGCACCTGGTCCCTGTCCAGTCTCGCACTTGCAATATGAGCACTATATGCATCCTATCATACATACTTCGTGGTGCCATTGGCCCAACGAGCACTGTCTATCTGCTATTCTC---------------------------------------------------------------------------
#=GS CrySki/1-370 DE BCHT01000004.1:1099277-1099646 Cryptococcus skinneri DNA, scaffold: scaffold_3, strain: JCM 9039, whole genome shotgun sequence
CrySki/1-370                        ----------------AACAACCCCCACCCGAGCTTAGACACGTCGACAGCAGA-------TCTCCACGCTGTCGATGTCACAGCTATCGGAAGAACGAGTCTCGTCTC-CCCTTTCGGGGGA--------CGTCCCAACCATCCGAATACCTGA--------------------------------------------------------------------------------------------ATCCTCCC-AGGATAC-T--CATCGCGATATGAC-GTTTCCTCCC--GATTCGTTGGGGGTCGAGACTGATTGTTGGGGAGGCTGGGAGGGGCTTGGCCTTCTCGTTAGAGTGTACTCTCCGATGACAGGTTTGAGCTGGTTGATCGGATGTCACATCTTCTTGTTGTCGCTCACTCTTTCATCTGGCATGGATGATGTCTGGGACATTAAGTCATTAGGTAGACATCTGAAGCAATCAAATCTTATAGAGCCA------------------------------------------------------------------------------------------------------
#=GS VanFra-1/1-275 DE BEDY01000006.1:c720680-720406 Vanrija fragicola DNA, scaffold: scaffold_6, strain: JCM 1530, whole genome shotgun sequence
VanFra-1/1-275                      -------------------------GACCCGAGCTTAGACACGTCTGCAGTAATC-------TCTACCACTGCAGATGTCACAGCTATCGGAAGAACAACACCCCTCCTCTCCACAGCGAGAGGAGACGTCACGACCTGCCCGGTGTCTTGCGCT------------------------------------------------------------------------CGTTTGCTTCGGCAAACGCGGCGTGGGGCGCTGCGCACGCTCGC-AGGCCGGATCTAAAGTTTGTTT----------------------------------------------------------------------------------------GAGTACGGTGGTGACGAGACATATTGGACATCTGGTTTAGGTTATGTAT----------------------------------------TGCGTGTGCTGTTCTTTGACGATTCACTGGTGTAGGT-----------------------------------------------------------------------------------------------
#=GS VanFra-2/1-371 DE BEDY01000001.1:638621-638991 Vanrija fragicola DNA, scaffold: scaffold_1, strain: JCM 1530, whole genome shotgun sequence
VanFra-2/1-371                      ----------------TCCCCTGCACACCCGAGCTTAGACACGTCTGCAGGTTGCC------TCTTCCACTGCAGATGTCACAGCTATCGGAAGAGCA-TCCCCCTC-TGTTTGCA-CCTGACTAGACACGTCAGCCGAAAAGCTGATGCGGATT--------------------------------------------------------------------GGTCAAGGGTCCACGGCCGTTGAGAGGTTCATGGCGCGATCAGAGTGGAACACCTGACGCTCGATATTGTT-----------------------------------------------------------------------------------------------CACACGCATGCATAAGCTCTCTCCCGCTTTCCCGTGTTGCAAACGCAGGT------------------------------------------CTATGCCTTTCCAAATACCGCGTCGCTAATCGCTGCTCCACAGCAACGCCGAGCGCCGACGGACGGGAGCCGAAAGGTACGCCGAGACGGAACCAAATTCGACAACGACACCGATCGCCG--
#=GS NaeAur/1-366 DE JAKFAO010000004.1:694470-694835 Naematelia aurantialba strain NX-20 Contig4, whole genome shotgun sequence
NaeAur/1-366                        --------------------CCTCGAAACCGAGCTTAGACACGTCGCCTGCCTCTGC-------CCACGCAGGCGATGTCACAGCTATCGGAAGAACGAACCCCCTCCTTGTT-CCAATCACGTCTCGTCAACGACCCTCTCGACC--------------------------------------------------------------------------------------------------------------TTCGGGAAGGAGGGCCAGCGACGACGATGCGCGTTGCCAA--GGAGCGCCTATGACGTCCTTGTGCTCGACTCGCGGACC----------------------------------------GAGTCGGGCGCTGTAGTTGGCGAAACACGCAATCCCCACGCCGAGGTTGGTGGGGTAGTTAAGAGGTTGTCGATGTATCGTGAAGAGTGAGGTTGCCAGCACTGAACATGTCATATCGCCGTCCTGAACGTGTACTCGTATGTATAACAGCAGAGGAATCCATGCAATTG---------------------------------------------------------
#=GS NaeEnc/1-375 DE MCFC01000068.1:21484-21858 Naematelia encephala strain 68-887.2 BCR39scaffold_68, whole genome shotgun sequence
NaeEnc/1-375                        ------------------CTCTAAAGAACCGAGCTTAGACACGTCGTCTGCCTTTTA-------TCACGCAGGCGATGTCACAGCTATCGGAAGAACAAACCCATCTCTCTCT---CCCTTTCACAGCCGCTTTTCCCTCGGGAGC------------------------------------------------------------------------------------------------------------AAGCTGGCTGTTTAAGGGAGTGTAGAGCGCCTTTCTGTTAAGTTCTTGCGTTCAGACTTTGCTTTTATCTCCTTC-----------------------------------------------AAGTCGAACGCTGTACATGGCGATACATCCTTACGTCCGTTATATTTATGAGCATGATCTACATGTACTTTTGGTATTATCAGAGTTACGGTAGGATGTAAGATTTAATATATCCTGAGCAGTCTTTATGTATATATCGAAAACTTTATTATGTAATTCACAGCCGAAAGTACAGTGTGCAT---------------------------------------------
#=GS KwoSha/1-373 DE NQVO01000005.1:136309-136681 Kwoniella shandongensis strain CBS 12478 scaffold00005, whole genome shotgun sequence
KwoSha/1-373                        ---------------------TCCCAACCCGAGCTTAGACACGTCTACAGCCAA-------TTTTTACGCTGTAGATGTCACAGCTATCGGCAGAACAAAACCTTCTTCCTT-----------------AGTGACTCTCTCGACG-------------------------------------------------------------------------------------AAAACTGGCATTCATTTTTCTTCCTCTCTCGAGGGGAAGA---AGAATGATTTGTCAGG------------------------------------------------TTCGAGGAGTTTGTGCTTGTGATTTCTTACGATGCGCAAG----TGGATCA--CGATGAAGAGACATTTTTGGTAGTTTTGTAGTTTGATATTTTGACGCATAGATCGTACTTGACATTTGCCTCTCAGCCAACGTGATGACATTTGATGTAAAGCACCTTTGATATTTACGACGAGTTATACCGCATAGCCTAAATTCATCAAACCATCAACGCCAATGACC-------------------------------------------
#=GS KwoHev/1-377 DE ASQC01000014.1:c328013-327637 Kwoniella heveanensis CBS 569 cont2.14, whole genome shotgun sequence
KwoHev/1-377                        ---------------GCAATCCCTCAAACCGAGCTTAGACACGTCGTCCGCCTC-------TTTCTCCGCGGGCGATGTCACAGCTATCGGAAGATCAACCTCTACCGTTTCCTGCAGTCACTTGTTTTATGAAACCCGTACAACAAGCCTGTCTGTCTGGTTCGGTTCGCTCCATCCCCCTCGCTCCTGTC-------------------------------------------------------------ATGATCT-GGATTCCGCACGCGGATGATAGCTGTGACTGGGGTTTCATGCAATCAATCTTGATTGGTTTGTAC-------------CGTGCGATCAACGACTTTCATTGACGTTGATCTATTCGCACGGACATCGAGGGGGTGAAGTACATGTTTTGTCTCTGTTCTCTCATTACGTCTCCAACACGTGGAAACCGCTGACATTGAATACCGCAAGATGTA---------------------------------------------------------------------------------------------------------------------------------
#=GS KwoBes/1-389 DE ASCK01000003.1:c7388-7000 Kwoniella bestiolae CBS 10118 cont1.3, whole genome shotgun sequence
KwoBes/1-389                        ---------CCCCTTCTTAATCCTCAAACCGAGCTTAGACACGTCTCTAGCCTCTGA-------CAACGCTAGGGATGTCACAGCTATCGGAAGATCAACCTTTTTCGTTTCTTTCCG--------GCTTTCCATTCCATCTGAACAATCTCCTTTCTT-------------------------------------------------------------------------------------------AGGATTGGGGATT----GATCGGATGTGGATCGCTGTTCGGTATAAATCGTTCGCATTGTGCGGGAATATTCCGATTTATACTACCCAGAGAAAGAAAGACATCCCATACTCCATCTGATCACCTCAAGGGTGATTGGTAATTATGAGTGACACATCATATCATCTCGTCAAACATCATGATTTGACCTGAACTCAACTGTTCGAATAAATTCATCAAAATCAGGAAGCAGGGAATGATCTCGAGCAGTGCTGACGGA-----------------------------------------------------------------------------------------------
#=GS KwoDej/1-376 DE ASCJ01000023.1:122060-122435 Kwoniella dejecticola CBS 10117 cont1.23, whole genome shotgun sequence
KwoDej/1-376                        ----------------CCCCACCCCTACCCGAGCTTAGACACGTCACTAGCCTCTGA-------TCACGCTTGGGATGTCACAGCTATCGGAAGATCAACGGTCGTCATCTCTTCTTCCTGTGTCCGCACTTGAAGGGATACGATTTCTTTCTTTTCT-CGG-----------------------------------TGATTCCGATCCGTCAGATGAAATTGTT-CTTCGGGATCTTTTCGGAATCCCGAATACCTGAAGGATGGTTTGATCATGATGATGGAATTTGCCTTTTCTCGGTACGTCC-TCTGAATCACAGTGCGT----ATCTGGTCGTAATTGGAGAAAGAAGGACATCTATCTATGTATT------GGAATTGACCATCTGTGATACTACAAACATACGACTTCTTCTCCACCTCCCTCCGTTCGTATTCCATTA------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS KwoMan/1-379 DE ASQD01000022.1:c140965-140587 Kwoniella mangroviensis CBS 10435 cont2.22, whole genome shotgun sequence
KwoMan/1-379                        ---------------TCCATTACCACAACCGAGCTTAGACACGTCACTAGCAAATC-----TTTCAACGCTAGGGATGTCACAGCAATCGGAAGATCAACTTTTGACTTTTAAGGTCGACTTTCTTTCTTTCTTTCTTAGAAAAGCTTTTCTATTCATTCGATTTGATTCTTCCTGTTCTTA---------------------------------------------------------------------------CGAATGGAGATTGATGAAGATGATGATTC---------------------------------------------------GCTGTTTATACTTTCAGTACGA----------------------------------GTTGGATACACCACAATTTATGCTCTTATAGAAAAGAAAGACATTCCATCTCATCTCGGATCTTTTATTTGGTCATCGTCACTGCTCTTGCCTTCACCATCAATTGCAATCCCAACTCCCGACGGTGACGGTGTAAAACGGTGAATCACCACGATGACCATTGTCT--------------------------------------------
#=GS TreFuc-a/1-368 DE BRDD01000107.1:843078-843445 Tremella fuciformis NBRC 9317 DNA, KCNB80TF.107, whole genome shotgun sequence
TreFuc-a/1-368                      ------------------GACGCATGCACCGAGCTTAGACACGTCGGCAGTCGCTCC-------CTACACTGCCGATGTCACAGCTTTCGGAAGATTGACACTGTCGCTGAGCGTCTGAACTGCACTGGTGGATTTCACGCCTTGTAGCGAGACCATAGGGGCGTCCCAGCTCGTCTGGAGGCTCCTGCCCCGGCGGCACATATTTCTCG-----------------------------------AGGCAGGATGTAGCTTCGGTGTCAGCATGTATTGATTGT-TCTGGTAGAAGAGCGTGACAACTGCCACCT----GACTCACTGACTGGCTTCTCCACATTGACATGCTGTGATGGC--------------------------------GTTGCAGACAGATTCACACTGAGCTCTAAGCCTGAAGTCTGATGGGTGTCGACGAGAGACGTCTCTGCGCAG------------------------------------------------------------------------------------------------------------------------------------------
#=GS TreYok/1-371 DE BRDC01000026.1:c251970-251600 Tremella yokohamensis NBRC 100148 DNA, KCNB35TY.26, whole genome shotgun sequence
TreYok/1-371                        ---------------CATGACGTACACACCGAGCTTAGACACGTCGGCAGTCGCA-------TTCTACACTGCCGATGTCACAGCTTTCGGAAGATTGACATTGTCGCTGAGCGTCTGAACTGCACTGGTGGATTTCACGCTTTGT-GCGAGACAGTAGGGGCGTCCCAGCTCGTCTGGAGGCTTCTATTTCGGCGGCACATCGTTCTCG-----------------------------------AGTCAGGACGTAGCTTCGGTGTCGGCATGTATTGATTGT-CCAGGAAAAAGGGCGGGCCGACTGCCACCT-----ACTTGCTGATTGGGTTCTCCACATTGACATGCTGTGATGGC--------------------------------GTTGCAGACAAACTCACACCGAGCTCTAGAGCTGAAGTCTGATGAATGTCGACGGGAGGCGTCTCTGCGAGGCC----------------------------------------------------------------------------------------------------------------------------------------
#=GS TreFuc-b/1-313 DE LBGW01000889.1:10338-10650 Tremella fuciformis strain tr26 contig889, whole genome shotgun sequence
TreFuc-b/1-313                      --------------------------CACCGAGCTTAGACACGTCGGCGGTCGCAC-------TCTACACTGCCGATGTCACAGCTTTCGGAAGATTGATAATGTCGCTGAG-ATATCCAAGCAGTCCATTTATTTCCACAAGGGCTACGGATCTACGGACGCGTCCCAGCTTGACTGGGAGGCTCTGACACGGCGAGACATCCGATTCG-----------------------------TGTCTGGGACAGAGCTGTCTCTATTGG-CATCATGTATTTAGTTT---------------------CAAGCCACCA--------GCTTGACAAGGTC------TTGATCGAGCTGTTGACGTC--------------------------------GTACTGACATGATCATCCCTGCGGTATTCATGCGAGGGCTTGCTAGGCGT---------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS TreTag/1-368 DE CAJHEQ010000541.1:c7549-7182 MAG: Tremellales sp. Tagirdzhanova-0007 genome assembly, contig: TREM_541, whole genome shotgun sequence
TreTag/1-368                        ----------------ACTCAAGTGTACCCGAGCTTAGACACGTCGGCAGCCGCTAC-------CTACGCTGCCGATGTCACAGCTATCGGCAGATCATTCCCTCGTTCCAGGCATCACAAACAGATCCATTAT-----GAAAAAC--------------GGAGCTGCATTACTTTTGAATCAACTACTCTCGGCGCAA-------------------------------------------------------------------------AAGATTGATCTT-----------------TGCCCAACGACACA----TGGGATCGGACAAGGGGTTGCAGGTTCTAGCAAGCTTATATCAT--------------------------------GTTGATCATGTACGAGTCGACCGGCTCCCCTTTGACGATTTCCTCAACGCGTAATGCCCATTAAAGGCGATCCTGATCGCCAAGAACCGAATGTCGAGATCTTGATGAGTCCCAGCGAGATGACAGATGGAGACGATGCGG-------------------------------------------------------------------
#=GS CutOle/1-265 DE QKWL01000001.1:c2299598-2299334 Cutaneotrichosporon oleaginosum strain ATCC 20508 ATCC20508_contig01, whole genome shotgun sequence
CutOle/1-265                        --------------------------ACCCGAGCTTAGACACGTCGGCAGTCTTC-------TTTCCCACTGCAGATGTCACAGCTATCGGAAGAACATTCCTACCTCGCAGTGCACTCCCT-TCGCCTCAGAT----------------------------------------------------------------------------------------ACGTCTGTGGCCGAGGTGGGGCGCACACGCTCACAGTCTGGTCCACAAGACTGTTCGAGCATCGCGAGAATGGTACA---TTTACCTCTC----------------------------------------------------------------------------------AGTAGTACATACATGCAT-----GAAAATACGGGCCCTCTTCACTCACTCTGCATTACCTTTTGCCGATTTCCTCTTTCCTCG------------------------------------------------------------------------------------------------------------------------------
#=GS CutCut/1-391 DE JAMALK010000015.1:c482876-482101 Cutaneotrichosporon cutaneum strain P1411 ctg_15, whole genome shotgun sequence
CutCut/1-391                        --------------------------ACCCGAGCTTAGACACGTCGGCAGTCTTC-------TCTCCCACTGCAGATGTCACAGCTATCGGAAGAACGACCCGTCCACGCAGTGCCCTCCCCACCACCTCGGAT----------------------------------------------------------------------------------------ACGTCTGAGGCGGCGGTGGCGGGCACACGCTCACAGTTTGGCCTCCAAGGCTGTTCGAGCACCGCGTGGGCGGTACA----CCTAGTCCA----------------------------------------------------------------------------------AGTAGTACATACATGCAT-----TACTGTCCCCTGGCTACCTCTTCTTCTTCCCCCGCCGCAGCGAGTAGTGCCCGTTAAACGCAATCCTTATAGCAAGGAAACGCACGTCGAGGTCGGCATGCACCGCCGCCTCCTTGCACACGCTCCCCACAGTGTCCTGGAACCCCAAGCTGCACTTGGAGACACGCTCGCGGATTTGCTCCAGCT
#=GS CryCur/1-338 DE BCJH01000024.1:260952-261789 Cryptococcus curvatus DNA, scaffold: scaffold_23, strain: JCM 1532, whole genome shotgun sequence
CryCur/1-338                        --------------------------ACCCGAGCTTAGACACGTCGGCAGCCTTC-------TTCTCCGCTGCAGATGTCACAGCTATCGGGAGACCAACCTCGATCCTGCTGCCACCGGTCTGTGTAGGCATG-----------------------------------------------------------------------------------------------------------------------------TCTAGGCTACGCTTAGCATGACCTGCGCAGGCCGG------------------------------------------------------------------------------------------------TCGCATGCTCACAGGCTCCTGTCCAGCCTGTTCGAGCGTCGCAGAATCGTCACAGCTACTTCTTGAAGCATATGCATATCTTGCTCCAGACATGGTGATACATACATGCTCGGCTTGCTAGCCGATGTGCTGCCCACTACATTCTACTCACGACTCCC-TCTGTCCTTCTCTTTCTCTCTCTTTCTTGCGCTCTTCTTC----------AAGG
#=GS PasPL2/1-384 DE JAMFRE010000010.1:226062-226893 Pascua sp. PL2904B ctg_10, whole genome shotgun sequence
PasPL2/1-384                        --------------------------ACCCGAGCTTAGGCACGTCGGCAGCCCCA-------TCCTCCGCTGCAGATGTCACAGCTATCGGAAGAACAAGCCTCCCGTACCTCACCTGCCCTGCTCCCGTGCCGCCGTACACGTACGCGCGGAATGGGCGCGGGGCGCCGCTCGCGCGCCGCTGCAA----------------------------------------------------------------------------------CGCGCGCTTGAGTATGGTGAACGCG--------------------------------------------------------------------------------------------------------GGACACTCGTCCGCCAAGAGTGGTTCTTTAAGATCCCCACTGTCCAGTATATCCAGTTTCGCGCAGGCATTCATCTCGTCCCTGTCCAGAACTATGAGCACTATATGCATCCTATCATACACATTTCGCCGCGCCATCCGCCCAACGAGCATTGTCTATCTGGTATTCCCACGCACTCGCACCCGTCCTGCGTCACTTGCCCTCT
#=GS CryFag/1-467 DE BCHU01000005.1:722540-723332 Cryptococcus fagi DNA, scaffold: scaffold_4, strain: JCM 13614, whole genome shotgun sequence
CryFag/1-467                        --------------------------AACCGAGCTTAGACACGTCAACAGCAATCAA-------TCACGCTGTTGATGTCACAGCTATCGGAAGATTGATAATTCTGTTTCTACGAATCAGATCCATGTGATTGAGAAACAAATGTTTTTGGATTAATTTCATTAATTTCCCTCAATTGGGGTTGA----------------------------------------------------------GATTCTTGATATCAATCCAAATCATTTGGTTGTAGAGTTGAAATCTGTTC---------------------------------------------TCCACATTCAACTCTCATATATCTCAATTAAACATTTTCATGAGGGTAAAAAAATATCGTCACAGTATCCAAATTAAAAATTGCATTTTACAGATGAATGAAATAACAAACACGAACCCCAAAATAAATCAATCCCATTGATTACGTCCTAGCCTTAGATGAACTCTTACTAACCTTCCGTAAACTGTAATGCCCATTAAAAGCTATCCTAATAGCCAAAAATCTAATATCCAAATCAGAATGTGATCCAGCCAAATGACAGAT
#=GS SaiPod/1-468 DE RSCD01000002.1:1511400-1512600 Saitozyma podzolica strain DSM 27192 scaffold_2, whole genome shotgun sequence
SaiPod/1-468                        --------------------------ACCCGAGCTCAGACACGTCCTCAGCCTCTA-------TCCACGCTGTCGATGTCGCAGCTATCGGAAGAACGACCCCCTCCGCTCCGTGCAGCACGCGAAGAAAGCCAATTATGGTCGATTCGTCGTGCTTCTGTCCTCGTGACTGTGTTTCTACGCTCT--------------------------------------------CGCGGCTTTGCGCGGGCGGTACACCCCCTCCTCGCTACGACGTACACTGAGGTCGCAATTCCACGTCGTTCTGT----------------------------------------------------------CATGTCACAACGTCACAATGTCACAATGTCACAATGTCACAACTGCACAATGTCACAACATTGCGAGTCGAGACGTCATCATATCCTCTCCATCTCATTCCATGCACGCAAATGTCTCGGCAGTGTCAAGTCACATCAGAGCGCCGGTCTGAGATGGTTCCCCTGCAACGTCTTTGCCACCGTCGTCCGCATCTGCCCACTTCGGTCCGTGTCGTGCACCAGCACACGGGTCCTAATCATG
#=GS PapLau/1-266 DE JAAZPX010000010.1:277811-278076 Papiliotrema laurentii strain IF7SW-F4 scaffold16_cov195, whole genome shotgun sequence
PapLau/1-266                        -------------------------AACCCGAGCTCAGACACGTTGCCAGTGCTG------TCCCTACACTGTCGATGTCGCAGCCATCGGAAGATCGAC----ACGCCGTCATCTTTCGACACGGACCGACCTCATTGAGATCGCGTCG--TGCTGTTCGAA-CTATTTGCAAGCGGCTCTCGTGCCATGCGC-----------------------------------------------------------------------------AAGGAATGATCAACGGGAC-----------------------------------------------------------------------------------------ATCTTTCTCTACGGTCTAATCACATTCGTAGCTACCATGCATTCCCGTACTATAAGCCAATATCCTGCCAATATCCTAGTACAGGGTCCAT-------------------------------------------------------------------------------------------------------------------------------------
#=GS PapTer/1-329 DE JAHXHD010001203.1:c13428-13100 Papiliotrema terrestris strain LS28 scaffold-1202, whole genome shotgun sequence
PapTer/1-329                        ------CAGCCCTTCCCCCCTACTCCACCCGAGCTCAGACACATTTCCAGTGCTAC------TCCCACACTGTCGATGTCGCAGCCATCGGAAGATCAACTCCATCGCCG---------ACCCAGACGGGAGCCTCCGGGCTTTCCGTCGACTACTGTTCGATACCAGTCATCGATTG-CGGAGAGCTCTCATAGCTAATCGCGCAGTGTCAAGGCGATACATG--------------------CCCAAGTAGTACAAGCGACTACGGCTTTGCGTGCGAGGTATCCGCT------------------------------------------------------------------------------------------GTCTACAATCTATTTCACATACAATTGTAGAGCACGATGCAACACATTGGCATTCTTGAGGAGGGCAATCTTGGGCGTGGC----------------------------------------------------------------------------------------------------------------------------------------------
#=GS CryFla/1-290 DE CAUG01000665.1:c84475-84186 Cryptococcus flavescens NRRL Y-50378 WGS project CAUG00000000 data, contig NODE_2199_length_286162_cov_45_720577, whole genome shotgun sequence
CryFla/1-290                        ----------CTGTTTCCCCACCCCCACCCGAGCTCAGACACATTTCCAGTGCAA------TTTCTACACTGTCGATGTCGCAGCCATCGGAAGATCAATCCCATCGCCG---------ACCCAGACGCTAGTCTTTGGACT-TCCGTCGACTCTTGCTCGGTGCTAGCCATCGAGCG-CAGACGGCTCTCATAGCTTTCTGCAGCGTGTCAAGGCGATACATA----------------------CAAGCAGCACAAGCAACCAAGGTATCCCGTGCGAGGTATTCGAT------------------------------------------------------------------------------------------ATCTGGGATCTATTTCACATACAATTGTAGAGCACGATGCAACGCATGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GC RF_cons                        ---------------------------ACCCGAGCUUAGACACGUCGGCAGCCUCC_______UCCCACGCUGCCGAUGUCACAGCUAUCGGAAGAUCAA
#=GC SS_cons                        ---------------------------..(((((((..((((..((.(((((.................))))).))))))..)))..))))........
//

• Image source 3.3:

# STOCKHOLM 1.0
#=GF RW van Nues, September 2023
#=GF https://coalispr.codeberg.page/paper
#=GS HACAcnag12987/1-243 DE 3:525355:525598:1
HACAcnag12987/1-243         ---------------------------------------------------------------------------------ATGCGTTTT-AAACGCTGTGCGGCA-GCACAGGTA-CAACTT-CCCCAAAGTTGCTCCTCACTTTCTT--AACACA-----------------------------------------------------------GTTGAGTTGAGCGTCAAGCCGGTGCGAGAGCAAA--CGCCGAGGA---------------------CGTCTAAGTTCCCTTCGTCCCTCCTTCCTT-----------------------AGGGTATCGTTCTGGTGAACGAT-GTGGAGGAGACGAGGGACGGTGGTCCATACATTTATTCTTAGCTGATG-TATTTCCGACTAATCAACATTCAGGCATT---------------------------------------------------------------------------------------
#=GS CNAG_12987/1-244 DE CP003830.1:595984-596227 Cryptococcus neoformans var. grubii H99 chromosome 11, complete sequence
CNAG_12987/1-244            ---------------------------------------------------------------------------------ATGCGTTTT-ACACGCTGTGCGGCA-GCACAGGTA-CAACTT-CCCCAAAGTTGCTCCTCACTTTCTT--AACACA-----------------------------------------------------------GTTGAGTTGAGCGTCAAGCCGGTGCGAGAGCAAA--CGCCGAGGA---------------------CGTCTAAGCTCCCTTCGTCTCTCCTTCCTT-----------------------AGGGTATCGTTCTGGTGAACGGT-GTGGAGGAGACGAGGGACGGTGGTCCATACATTTATTCTTTGCTGTAGATATTTCCGACTAATCAGCACTCAAGCATT---------------------------------------------------------------------------------------
#=GS WM276/1-245 DE CP000288.1:581552-581796 Cryptococcus gattii WM276 chromosome C, complete sequence
WM276/1-245                 ---------------------------------------------------------------------------------ATGCGTTTTTATACGCTGTGCGGCA-GCACAGGTA-CAACTT-CCCCAAAGTTGCTCCTCACTTTCTT--AACACA-----------------------------------------------------------GTTGAGTTGAGCGTCAAGCCGGTGCGAGAGCAAA--CACCGAGGA---------------------CGTCTAAGTTCCCTTCGTCTCTCCTTCCCC-----------------------ATGGTATCGTTCTGGTGAACGGT-GTGGAGGAGACGAGGGACGGTGGTCCATACATTTATTCTCTGATGTAGATGTTTCCGACCAATTAGCAAGCAGTCATT---------------------------------------------------------------------------------------
#=GS R265/1-250 DE CP025759.1:853270-853519 Cryptococcus gattii VGII R265 chromosome 1, complete sequence
R265/1-250                  ---------------------------------------------------------------------------------ATGCGTTTTTATACGCTGTGCGGCA-GCACAGGTA-CAACTT-CCCCAAAGTTGCTCCTCACTTTCTT--AACACA-----------------------------------------------------------GTTGAGTTGAGCGTCAAGCCGGTGCGAGAGCAAA--CACCGAGGA---------------------CGTCTAAGTTCCCTTCGTCTCTCCTTCCTC-----------------------ATGGTATCGTTCTGGTGAACGGC-GTGGAGGAGACGAGGGACGGTGGTCCATACATTTATTCTCAGATGTAGATGTTCCCGACTAATTAGCAAGCAATCATTGCAAT----------------------------------------------------------------------------------
#=GS CryVH5/1-256 DE JANBXI010000023.1:26300-26555 Cryptococcus sp. VH57_BW 23, whole genome shotgun sequence
CryVH5/1-256                ----------------------------------------------------------------------------TCTTCAAGCGTTTTT--ACGCTGTGCGGCA-GCACAGGTC-ATACTTTCCCCAAAGTTGCTCCTCACTCTATT--AACACA-----------------------------------------------------------GTCGAGTCGAGCGTCAAGCCGGTGCGAGAATG-----AGTCTGGA---------------------CGTCCTAGCTCCCTTTTGTCTCTCCTCCCC-----------------GATCCTGGGGTGCCGTTCTGGTGGATGGC-GTGGGAGAGGTGAGGGACGGTGGTCCCTACATCTTTAACATGTATATGATGGATCATATATGCCTTCATGCTTGTGTCCTTG-----------------------------------------------------------------------------------
#=GS CryWin/1-269 DE CP034261.1:c964191-963923 Cryptococcus wingfieldii strain CBS7118 chromosome 1, complete sequence
CryWin/1-269                --------------------------------------------------------------------------------ATAGCGTTTT---ACGCTGTGCGGCA-GCGCGGGTA-CAACTT-CCCCA-AGTTGCTCCTCACTCCATAT--CAACA-----------------------------------------------------------GTCGAGTCGAGCGTCAACCCCGTGCGAGAGCAAAGTTATCGAGGA---------------------CGTCTTAGTTCCCTTCGTCTTCTCCCCC---------------------GTCAAGGGTATCGTTCTGGTGAACGAT-GTGGGA-AGTCGAGGGACGGTGGTCCATACATCTTTCTATATTATGTACTTCATTTGTCGCACATACTGTTCTTTTACCTATCCGGATCCCGCTCATGTTGC---------------------------------------------------------------
#=GS CryFlo/1-289 DE RRZH01000001.1:1359175-1359463 Cryptococcus floricola strain DSM 27421 chromosome 1, whole genome shotgun sequence
CryFlo/1-289                ----------------------------------------------------------------------TTCTTTCTTTATAGCGTTTT---ACGCTGTGCGGCA-GCGCGGGTA-CAACTT-CCCCA-AGTTGCTCCTCACTCCATAT--CAACA-----------------------------------------------------------GTCGAGTCGAGCGTCAACCCCGTGCGAGAGCAAAGTTATCGAGGA---------------------CGTCTTAGTTCCCTTCGTCTTCTTCCCC---------------------GTCAAGGGTGTCGTTCTGGTGAACGAT-GTGGAA-AGTCGAGGGACGGTGGTCCATACATCCTTCTATATTATGTACTTCATTTGTCGCACATACTGTTCCCTATCCGGATCCCGCTCATGTTGCCTTCTCATGTATGTA-----------------------------------------------------
#=GS CryAmy/1-269 DE MEKH01000002.1:c935796-935528 Cryptococcus amylolentus CBS 6273 supercont2.2, whole genome shotgun sequence
CryAmy/1-269                ----------------------------------------CAAATTTTGCATCTCTTTCCTCTTTCTCTTTTCTTTCTTTATAGCGTTTT---ACGCTGTGCGGCA-GCGCGGGTA-CAACTT-CCCCA-AGTTGCTCCTCACTCCATAT--CAACA-----------------------------------------------------------GTCGAGTCGAGCGTCAACCCCGTGCGAGAGCAAAGTTATCGAGGA---------------------CGTCTTAGTTCCCTTCGTCTTCTCCCCC---------------------GTCAAGGGTGTCGTTCTGGTGAACGAT-GTGGGA-AGTCGAGGGACGGTGGTCCATACATCCTTCTATACTATGCACTTCATTGTCCTTT-------------------------------------------------------------------------------------------------------
#=GS KwoSha/1-235 DE NQVO01000076.1:c22838-22604 Kwoniella shandongensis strain CBS 12478 scaffold00076, whole genome shotgun sequence
KwoSha/1-235                -------------------------------------------------------------------------------TTTAGCGATTT--ATCGCTGTGCGGCA-GCGCAGGTC-ATACTTTCCCCAAAGTTGCTCCTCACTCTTGTCTTTAACA-----------------------------------------------------------GTCGAGTCGAGCGTCAATCCTGTGCGAGAAAAATTTGGATATCTA---AGTTCCCATTTAT-----CGCCCCTTTACCTTTTTTCCTTTT-----------------------GGGAAAAAAGGACCGTTCTGGTGGATGGT-GTGGAG-AGGCGAGGGACGGTGGTCCGTACATCTTATCTTATTCTATCTAT------------------------------------------------------------------------------------------------------------------
#=GS KwoDej/1-314 DE ASCJ01000054.1:171624-171937 Kwoniella dejecticola CBS 10117 cont1.54, whole genome shotgun sequence
KwoDej/1-314                ---------------------------------------------------------------------------------ATGCCTTTTT--AGGCAGTGCGGCA-GCCCCGGT--ACACTTCCCCAAAAGTTGCTCCTTATCACACTGTCTCCCATCTCCGTTCAATGCCTATGGGTCGGATGGACGGGGGGCG-------------AACCACGATCAAGTCGAGCGTCAACCCGGTGCGAGAGGAACAAATCCGTTTTTACAGATTCAGAAAACATCTTAATTCCCATCGCTTTTCCAATCTTTTATTCTT------------------AGAAGATGATCAACCTGGTGGATGATT-TGGGATA-GCGAGGGATGGTAGTTCTCACAAATAAAACCCTTATGTATGTATGTCATTTTCACTCGCATGAGG-------------------------------------------------------------------------------------------
#=GS KwoBes/1-306 DE ASCK01000005.1:c782210-781905 Kwoniella bestiolae CBS 10118 cont1.5, whole genome shotgun sequence
KwoBes/1-306                -----------------------------------------------------------------------CTCCTTCTTCATGCCTTTTC--AGGCAGTGCGGCA-GCCCCGGTCATACTTTCCCCAAAAGTTGCTCCTTATCGCCCTCTTCTCCCCCTCCCGACCGACATTGCCTATGGGGTGTCAACTGTGGAGAAGGGGAAAGAGATACACGATCAAGTCGAGCGTCAATCCGGAGCGAGAG----------------------------TATTTGAACATCTTAGTTCCCATCTTATTCTTCTATT---------------------CTTTGGAAATCGACCTGGTGGACGAT-ATGGAAAT-AAGAGGGACGGTAGTTCGTACATACTTTGCAGGTTCATTGTATTGCTCATCATGAATACTGTA---------------------------------------------------------------------------------------------
#=GS CryGC2/1-288 DE JALPCC010000039.1:91048-91335 Cryptococcus sp. GC_Crypt_2 iso00_70_39, whole genome shotgun sequence
CryGC2/1-288                ------------------------------------------------------------------------------TTTACGCCTATTA-TAGGCTGTGCGGCA-GTCACAGTATCAACTT-CCCCA-AGTTGCTCCTTCTCC------CACTCAAA-------------------TCGAGT-------------------------AATCACGAGT-AGTCGAGCGTCAACCTGTGTCTAGATCAATATTTCTTAC-GAGGACGTCTTAATTCCCAGCTTTTCCGAATCGCTTTTTTTC-------------------------GAAAGGAAAGAGTAGCTCCTTGGTAGGGAGTAGTGTTTGGAGAGCGGGATGGTGGTCCGTATATCTTTTGTTAGTACTGGTCAATTGTATGAATATGGGTATGGGTATTATTGTCATTTG-----------------------------------------------------------------------------
#=GS CryGC3/1-291 DE JALPCB010000049.1:76906-77196 Cryptococcus sp. GC_Crypt_3 iso00_45_49, whole genome shotgun sequence
CryGC3/1-291                -----------------------------------------------------------------------------TCTTCATATCCCTTC-GGGGAGTGCGGCA-GCCTAGGTT-TAACTT-CCCCA-AGTTGCTCCTCACCCCCTCCC--CTCTCTTGGCCATCGTGAGATGCGTCTGGAGAGGGG--------------------AACTACGGTCGAGTCGAGCGTCAACCCTTGGCGAGAACGAGCTTGCGCTATTTGTCTATGGCGCGGGCTCGAACATCTTAGTTCCCTTTTGCGCTTTTATCTCTTTC------------GAAAGAAAGAGACCCGTTCTGGTGGATGGT-ATAGAGGCGTAT-GGGACGGTGGTTCGGACATCTATATCTATACGACTTT-------------------------------------------------------------------------------------------------------------------
#=GS CryGC5/1-291 DE JALPBZ010000250.1:11527-11817 Cryptococcus sp. GC_Crypt_5 iso00_58_250, whole genome shotgun sequence
CryGC5/1-291                -----------------------------------------------------------------------------TCTTCATATCCCTTC-GGGGAGTGCGGCA-GCCTAGGTT-TAACTT-CCCCA-AGTTGCTCCTCACCCCCTCTTCTTCCTGTTGGCCCA----GCTAGCAGC-GGAGAGG----------------------AACTACGGTCGAGTCGAGCGTCAACCCTTGGCGAGAACGAGCTCGCGCTATTTGTCTATAGCGCGGGCTCGAACATCTTAGTTCCCTCTTACGCTTTTATCTCCTTTTTTC----GAGAGGAAGAAGGAGACCCGTTCTGGTGGATGGT-ATAGAGGCGTAT-GGGACGGTGGTTCGGACATCTACACTATCTATAC----------------------------------------------------------------------------------------------------------------------
#=GS CryGC7/1-301 DE JALPBX010000057.1:c87879-87579 Cryptococcus sp. GC_Crypt_7 iso00_79_57, whole genome shotgun sequence
CryGC7/1-301                ------------------------------------------------------------------------------CTTCATATCCCTTTATGGGAGTGCGGCA-GCCTAGGTT-TAACTT-CCCCA-AGTTGCTCCTCACCCCTTCTCTCTGCTGTCACAAGCGGAGAGGAACTACGGTCGAGTCGAGCG------------TCAACCCTTGGCGAGAG-CGAGCGCAAGCCC-----GAGCATCTCAGTTCCCTCTACGCCTCTATCTTCTTC---------------------------------------------------GTCAGAAGAAGACCCGTTCTGGTGGATGGT-ATAGAGGCGTAT-GGGACGGTAGTTCGGATATCTCATTACTCCAGTACAGCTATTATCTTCGTTGTGTATCGTGTCACCATAATACCAATGTATA----------------------------------------------------------------------
#=GS TreTag/1-290 DE CAJHEQ010000055.1:41510-41799 MAG: Tremellales sp. Tagirdzhanova-0007 genome assembly, contig: TREM_55, whole genome shotgun sequence
TreTag/1-290                ------------------------------------------------------------------------------ATAGTCTTTTTCGAAAGGCTGTGCGGCA-GCCACGGTCTACACTTTCCCCAAAGTTGCTCCTGACCTTACCTT-------------------------------GGAAACCTTGGTTCT---------------CAACGGACAGTCGAGCGTCAACCCGTGGCTAGAGAAACAGGACGTCTTAGTCCCCTGCCTGGAGTTTTCTTCTCCTCCCCCCCTTTTTGTTCTGTTT-------------------------------TTATTTTTGATGGGGCGCTGGAGAGGGGGGGCGGGGCGGTGGTCCTTACATCTTCGTGACGATTGCGTTTTTGGGGATGATGGGTGTTGGTCGTGTATGCATCGAG------------------------------------------------------------------------------
#=GS CrySki/1-297 DE BCHT01000003.1:1127902-1128198 Cryptococcus skinneri DNA, scaffold: scaffold_2, strain: JCM 9039, whole genome shotgun sequence
CrySki/1-297                ------------------------------------------------------------------TCTCTTGTTCACCTCATGGATATTTTATATCTGTGCGGCACGCCAAGGTAATACTGTTTCCCC-AGTTGCTCCTGTGAC------CAACCA-----------------------------------------------GTGGTTATCCACTCGTAGTCGAGCGTCAAACTTTGGCCAGAACTATTCGGTTTCCCTCCCCTTTCCCCCTTTCTCTCTCGGGGGATTGGGGGAAAGGGAGGGAATTGAGAAGGACGTCTAAGTCCCCTGGCCGCCTGCTTGGTGTTGATGATACCTGTAGAGGGTGGTGGGGCGGTGGTCCTTACATTTTAGTATGTTACTCTAGTTCATGAG-----------------------------------------------------------------------------------------------------------
#=GS CryFla/1-386 DE CAUG01000607.1:c496-154 Cryptococcus flavescens NRRL Y-50378 WGS project CAUG00000000 data, contig NODE_1695_length_7203_cov_37_759823, whole genome shotgun sequence
CryFla/1-386                CCCATATACTGCCTTATGGCAGGTGCGGCAAGCCAATGGAAATCGCCCGATCCTGCTGTCTAACCTCAACTCACCCATATACTGCCTTAT---GGCAGGTGCGGCAAGCCAATGGAAATGTCTTCCCCGACGTTGCTCTCTGTCCGGT--------------------------------------------------------------AACCACGATAGGTCGAGCGTCAATCCGTGGCGAAAGAGTAANNNNNN-------------------------------------------------------------------------NNNNCTCTGCAAGGCGGGAGGGGCGCGGGTTGGACGGAGGGTGGGATGGTGGTCCGGATATACGTACGATAGTCTTGATGCGCTATGCACGTTGAACAGTGTTGATTTGGGGCCTCATGGAAAAGCGTGTGCTGTCGGGGAGGTAAAGAAGAGGCGAGGAGGCACTCGAGCTCATGGCTCCCTTCACCCTACAG
#=GS PapTer/1-212 DE JAHXHD010000057.1:16490-16701 Papiliotrema terrestris strain LS28 scaffold-56, whole genome shotgun sequence
PapTer/1-212                --------------------------------------------------------ACGTTCTTCTCAACTCACCCAAATACTGCCTTT---TGGCAGGTGCGGCAAGCCAATGGAAATGTCTTCCCCGACGTTGCTCTCTGTCCGCTT--------------------------------------------------------------CACACGATAGGTCGAGCGTCAATCCGTGGCGAAAGAGTAAGGACGTCTCAGTTCCCA--------------------------TACCTGTTCTCCGCCTCTCGGGGGCCGGCTCCCTCCTCTGCTCTGCAAGGCGGGGGAGGGGCTGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS TriGue/1-310 DE BCJX01000014.1:475355-475664 Trichosporon guehoae DNA, scaffold: scaffold_13, strain: JCM 10690, whole genome shotgun sequence
TriGue/1-310                ---------------------------------GGGGGTACATAAACATCCCCTCTTTCGCTCTTCTCGACTTTTTCCCAAGTGCGTC---AAGCACCGTGCGGCAAGCCCCGGGTCACAGTTTCCCCT--GTTGCTCCTCGACCG-----CAACAA----------------------------------------------------------CGTCGGGTCGAGCGTCAACCCGGATCGGGCCAGAGACACAGGCCATCTCA----------------------------------------GTCCCCAACGCGCGTGCCGCGCCGATTCCACCCGCAAGGGTGGGGTTGGCGCGGGGGTGCGCGC-GTGGGGCGGTAGGCCATATATTTCTTGTTGTTTTCATGCACGTGTTGTGGTTCTTTTCATGCAGGTGTTGTGGTTGTGCGCT------------------------------------------------------------------------
//

• Image source 3.4:

# STOCKHOLM 1.0
#=GF RW van Nues, September 2023
#=GF https://coalispr.codeberg.page/paper
transcript-with-HACAsnoRNA-494nt/1-495         -----------------------------------------------------------TTCTTTTCGCTCTCCATTATTAATATTTCAACATTAAGTCAAGGAAGGCGTTACACGGTCAATCCTTTTTCTTGATTACCTCCCCACAGAAGTTAGCAAGCGTCACTTGCATTGCAGTCAGCAGTGGCTATGCAGAGGGTATTAAACGACTCGTTCGCGAGGTATCACTGACGACACGTTTCTTTTTCTATTTCTAGGAGTTATCTTCTGCTTCCTTCATGTCTTCTCTGTCATCTACCTCTCTTCCTTCGACACGCCTCTTTTATTCACGATCGACGCTCATT-TCGTTAGCG--ATCGGACGGGGAAAGAGAGGCAAGATAT-AACACCA-------------GTTATA---------ACCCAGGACGTGCACT-----CTGACTTTAGTCGGTCGGAGATGA--------------CGTT-----CACGGGGCTTGTG--------------------ATTTT-AGAGTC-ATGAGCTGTTGGGTGGACTGGG--ACATCGCCCACATTGCATTCGTAGAGTCAATACGATTTCGTGATGTCAATAATTTTCATTATACTGTGCTG-----------------
#=GS HACAcnag13008/1-177 DE ncrna 3:986696:986873:-1
HACAcnag13008/1-177                            ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGCCTCTTTTATTCACGATCGACGCTCATT-TCGTTAGCG--ATCGGACGGGGAAAGAGAGGCAAGATAT-AACACCA-------------GTTATA---------ACCCAGGACGTGCACT-----CTGACTTTAGTCGGTCGGAGATGA--------------CGTT-----CACGGGGCTTGTG--------------------ATTTT-AGAGTC-ATGAGCTGTTGGGTGGACTGGG--ACATCG----------------------------------------------------------------------------------
#=GS CNAG_13008/1-428 DE XR_001046314.1 Cryptococcus neoformans var. grubii H99 hypothetical RNA (CNAG_13008), ncRNA
CNAG_13008/1-428                               --------------------------------------------------------------------------------------------------------------------GCAATAAGTATCTCAAGAAGACCTTACACGGTCAATCCTTTCCTTTTTCTTGATTATCTTTCCACGATAGTCAGCAAAGGTACTTATATTGCAGTGAGCAGCGGCTATGCAGAGAGGTATTGAACGACTCGTTCGCGAGGTACCATTGACTTGTTTTTCTATCTGCTTCTTCCATGTCTACCTCTCTTCCTTCAACACGCCTCTTTTATTCACGATCGACGCTCAAT-TCGTTAGCG--ATCGGACGGGGAAAGGGAGGCAAGATAT-AACACCA-------------GTTATG---------ACCCAGGGCATGCACT-----CTGACTTTAGTCGGTCGGAGATGA--------------TGTT-----CATGGGGCTTGTG--------------------ATTTT-AGAGTC-ATAAGCTGTTGGGTGGACTGGG--ACATCGCCTGCATTGGATTCATAGAGTCAATACAATTTCGTGATGTTAATAATTTCATTAT---------------------------
#=GS H99/1-468 DE CP003830.1:c1010297-1009830 Cryptococcus neoformans var. grubii H99 chromosome 11, complete sequence
H99/1-468                                      --------------------------------------------------------------------------------CTCTCTTTTCTTTCCCTCTTCATCATTAATTTTTCAGCAATAAGTATCTCAAGAAGACCTTACACGGTCAATCCTTTCCTTTTTCTTGATTATCTTTCCACGATAGTCAGCAAAGGTACTTATATTGCAGTGAGCAGCGGCTATGCAGAGAGGTATTGAACGACTCGTTCGCGAGGTACCATTGACTTGTTTTTCTATCTGCTTCTTCCATGTCTACCTCTCTTCCTTCAACACGCCTCTTTTATTCACGATCGACGCTCAAT-TCGTTAGCG--ATCGGACGGGGAAAGGGAGGCAAGATAT-AACACCA-------------GTTATG---------ACCCAGGGCATGCACT-----CTGACTTTAGTCGGTCGGAGATGA--------------TGTT-----CATGGGGCTTGTG--------------------ATTTT-AGAGTC-ATAAGCTGTTGGGTGGACTGGG--ACATCGCCTGCATTGGATTCATAGAGTCAATACAATTTCGTGATGTTAATAATTTCATTATACTG-----------------------
#=GS R265/1-456 DE CP025759.1:c1215778-1215323 Cryptococcus gattii VGII R265 chromosome 1, complete sequence
R265/1-456                                     ----------------------------------------------------------TCTTTCTTTCTTCATCTTTACCTCTATCAGCATCAAGTATCCAAGAATAAGCTTACATGGTCAATCCTCTTTCCTGATAACCTTTCGACCAAACCCGGCGAGGATCATTTATATTGCAGTCAGCAGTGGCTATGCAAAGGGTATTGAACGACTCGTTCGCGAGGTATCACTGACTACACGTTCTCTTCTATCTGCAGGAGTTTCCTTATGCTTTCTTTCATGTCTTCCCTACCATTTACCTCTTCTCCTTTGACACGCCTCTTTTATTCACGATCGACGCTCATT-TCGTTAGCG--ATCGGACGGGGAAAGGGAGGCAAGATAA-GATACCA-------------GTCATG---------ACCCAGGACGTGTACT----CTTGACTTTAGTCGGTCGGAGATGG--------------CGTT-----TGCGGGGCTTGTG--------------------ATTTT-AGAGTC-ATGAGCTGTTGGGTAGACTGGG--ACATCGCTTGCAGTGCATTTATAGAGTCAA----------------------------------------------------------
#=GS WM276/1-178 DE CP000288.1:c965911-965734 Cryptococcus gattii WM276 chromosome C, complete sequence
WM276/1-178                                    ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGCCTCTTTTATTCACGATCGACGCTCATT-TCGTTAGCG--ATCGGACGGGGAAAGGGAGGCAAGATAA-GATACCA-------------GTTATG---------ACCCAGGACGTGCACT----CTTGACTTTAGTCGGTCGGAGATGG--------------CGTT-----CACGGGGCTTGTG--------------------ATTTT-AGAGTC-ATGAGCTGTTGGGTAGACTGGG--ACATCG----------------------------------------------------------------------------------
#=GS CryWin/1-505 DE AWGH01000008.1:c631349-630845 Cryptococcus wingfieldii CBS 7118 supercont1.8, whole genome shotgun sequence
CryWin/1-505                                   CGGTGAATTATAATTAATTATAATTAACGACCAACAATTCCAGGATGACGTGAGGCGCAGCACCCCGCCCTGCACTATCGCTTTTGCTCCCGCCCCTTGGCTAATCCCGAACTGCTCCCGCCCAAACTCCCCTCCCCAAATTTACATCTCCATCTCTCATTCCTTCTTCATCCTCCATCTCTCCTCCAACAAGCCTTCAGCGCCCCATCAAGCATGCAGCTGCATACCTAGTCGTGCTCAGCAGTACCGTTCAGCGCTTCCCATCACGCCACGCCATACCCCCATCACCCCATCACCGACCTATTCCTTCGCACGCCTTTTTTATTCACGATCGACGCTCAAT-TCGTTAGCG--CTCGGACGGGGAAAGAGAGGCAAGATT--GATACCA-------------GTTATG---------GCCCAGGGTGTGAACT-----CTGACTTTAGTCGGTTGGAGACGACAT----------CTGTT---------GGGCTCTAGT---------------CTTTGTTTG-GGAGAC-TCGAGCTGCCGGGTAGATTGGG--ACATCTCTTTCATAGCAT----------------------------------------------------------------------
#=GS CryWin/1-181 DE CP034261.1:c893254-893074 Cryptococcus wingfieldii strain CBS7118 chromosome 1, complete sequence
CryWin/1-181                                   ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGCCTTTTTTATTCACGATCGACGCTCAAT-TCGTTAGCG--CTCGGACGGGGAAAGAGAGGCAAGATT--GATACCA-------------GTTATG---------GCCCAGGGTGTGAACT-----CTGACTTTAGTCGGTTGGAGACGACAT----------CTGTT---------GGGCTCTAGT---------------CTTTGTTTG-GGAGAC-TCGAGCTGCCGGGTAGATTGGG--ACATCT----------------------------------------------------------------------------------
#=GS CryFlo/1-184 DE RRZH01000001.1:1435452-1435635 Cryptococcus floricola strain DSM 27421 chromosome 1, whole genome shotgun sequence
CryFlo/1-184                                   ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGCCTTTTTTATTCACGATCGACGCTCAATT-CGTTAGCG--CTCGGACGGGGAAAGAGAGGCAAGATTG--ATACCA------------GTT-ATG---------GCCCAGGGTGTGAACT-----CTGACTTTAGTCGGTTGGAGACGACAT----------CTGTT---------GGGCTCTAGT---------------CTTTGTTTG-GGAGAC-TCGAGCTGCCGGGTAGACTGGG--ACATCTCTT-------------------------------------------------------------------------------
#=GS CryAmy/1-190 DE MEKH01000002.1:c862619-862430 Cryptococcus amylolentus CBS 6273 supercont2.2, whole genome shotgun sequence
CryAmy/1-190                                   ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGCCTTTTTTATTCACGATCGACGCTCAATT-CGTTAGCG--CTCGGACGGGGAAAGAGAGGCAAAATTG--ATACCA------------GTT-ATG---------GCCCAGGGTGTGAACT-----CTGACTTTAGTCGGTTGGAGACGACAT----------CTGTT---------GGGCTCTAGT---------------CTTTGTTTG-GGAGAC-TCGAGCTGCCGGGTAGATTGGG--ACATCTCTTCCATAG-------------------------------------------------------------------------
#=GS CryVH5/1-194 DE JANBXI010000005.1:160458-160651 Cryptococcus sp. VH57_BW 5, whole genome shotgun sequence
CryVH5/1-194                                   ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGCCACTTTTATTCACGATCGACGCTCAATT-CGTTAGCGA-TTCGGACGGGGAAAGGGTGGCCAGAATC--ATACCA------------GCTGTTG---------ATCCAAGACGTGAACT-----CTGACTTTAGTCGGTTGGAGACGACGC----------CTGT---------GGGGCTCGCG--------------------GTCCG-TATGGCCGTGGGCTGATGGATAGGCTGGGAGATACCTTATTTATTTCCAT---------------------------------------------------------------------
#=GS CryGC7/1-208 DE JALPBX010000001.1:c195074-194867 Cryptococcus sp. GC_Crypt_7 iso00_79_1, whole genome shotgun sequence
CryGC7/1-208                                   ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACCGCCTCTTTTATTCACGATCGACGCCAAA--CCATTGGCG--CTCGGACGGGGAAAGGGAGGCAAGATAGATCCTTCTT--------CGCGTTGGTATCAGACATAATCCAGGTGCTTGAA------CGGGCTTTAGTCGGCCTA-TGGG--------------AAGTTT---CCATAGGACAATCGACCT----------------GTTTGTCATGGTCGTGAGTTGCCGGGTTGTTTGAT--ATATCTATTATCCCT-------------------------------------------------------------------------
#=GS CryGC5/1-206 DE JALPBZ010000181.1:28290-28495 Cryptococcus sp. GC_Crypt_5 iso00_58_181, whole genome shotgun sequence
CryGC5/1-206                                   ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGCCTCTTTTATTCACGATCGACGCCAAA--CCATTGGCGA--TCGGACGGGGAAAGGGAGGCCAGATAGATCCTTCTTCGTTTGTTCGAGTTGGTGTCACACGTAATCCAGGTGCTTGAA------CGGGCTTTAGTCGGCCTA-CGGG--------------AAGCTT---CCATAGGACAATCGACCT----------------ATTTG-CGTGGTCGTGAGTTGCCGGGTTGTTTGAT--ATATCTAC--------------------------------------------------------------------------------
#=GS CryGC3/1-209 DE JALPCB010000159.1:36838-37046 Cryptococcus sp. GC_Crypt_3 iso00_45_159, whole genome shotgun sequence
CryGC3/1-209                                   -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCGCCTCTTTTATTCACGATCGACGCCAAA--CCATTGGCGA--TCGGACGGGGAAAGGGAGGCCAGATGTATCCTTCTTCGTTTGTTCGAGTTGGTGTCAGACGTAATCCAGGTGCTTGAA------CGGGCTTTAGTCGGCCTA-CGGG--------------AAGCTT---CCATAGGACAATCGGCCT----------------TTTTG-CGTGGTCGTGAGTTGCCGGGTTGTTTGAT--ATATCTACCA------------------------------------------------------------------------------
#=GS BulAlb/1-263 DE CAMYTR010000139.1:c688218-687956 Bullera alba genome assembly, contig: jcf7180000012240, whole genome shotgun sequence
BulAlb/1-263                                   ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAGCCTCCTTTATTCACGATCGACGCTAGATCTCCGTGGCG--CTCGGACGGGGAAAGGGAGGCAAGAT-GAACGATC-------------TCGAATG---------ATCCAGGACGCTCAT-------CGACTTTAGTCGGTTGA-TGGGG------------TCTGTT---------GGGCTCGACAAA----------------GGCTATACGCCTTGTCGAGCTGCCGGATGATTCGAT--ATATCTTATATACAATATGGCATGAATCGAGTACTGGACGAGGAAGGAGCACGACCAGCATTGGCCATTGCCACGTCGATGTCTGATT
#=GS KocImp/1-206 DE NBSH01000001.1:1204191-1204396 Kockovaella imperatae strain NRRL Y-17943 BD324scaffold_1, whole genome shotgun sequence
KocImp/1-206                                   ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGCCTC-TTTATTCACGATCGACGCCAGAATGTG-TGGCAA--TCGGACGGGGAAAGAGGGGCAAGATAAGAAGACCAA----------TCATTCATT--------GTCCAGGGGTCGTCAA-----TGGGCTTTAGTCGGCTCGTTGGGAT------------CTGTC---------TAGTCTATTATGATTCATCCAGAGGATC----------AGAAGAGCGA-ACTGGATAGCTTGAT--ACATCTTTTGTAGTCGTGCCAT------------------------------------------------------------------
#=GS KwoSha/1-224 DE NQVO01000007.1:c531304-531081 Kwoniella shandongensis strain CBS 12478 scaffold00007, whole genome shotgun sequence
KwoSha/1-224                                   ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGCCTCTTTTATTCACGATCGACGCTCAAT-TCGTTAGCGA-TTCGGACGGGGAAAGGGAGGCCAGAACC-AATACCT-------------TTTATG---------ATCCAGGACGTATACCTT---CTGGCTTTAGTCGGCT-GAAGGACG-----------TCTGTT--------AGGACTTTACGACGTC--------------ATTTTGTGTGTCGTCAAGTTGGCGGATAGAATGGG--ATATCTTGTATAGTCTTTGATCTACCAATGCAAACAATGTCAC---------------------------------------------
#=GS KwoBes/1-212 DE ASCK01000005.1:c1252014-1251803 Kwoniella bestiolae CBS 10118 cont1.5, whole genome shotgun sequence
KwoBes/1-212                                   ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGCCCC-TTTATTCACGCCCGCCGTCCAA--CCATTGACG--TCCGGACGGGGAAAGGGGGGCCATATAA--AAAACC------------GTTTC-----------ATCCAGGCAAATACGGACCACCTGACTTTAGTCGG-TCAGGGGA----TGGTATT--TCCATAT-----GATGAGTCTACC--------------------GATTATAACGTAGAGGAGTCAA-GGATGGGATGGG--ATATCTTATTTGATATTAGTTCAGTATTGTGG--------------------------------------------------------
#=GS TreFuc/1-216 DE BRDD01000198.1:c140217-140002 Tremella fuciformis NBRC 9317 DNA, KCNB80TF.198, whole genome shotgun sequence
TreFuc/1-216                                   ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGCCT-CCTTATTCACGATCGACGCTCAAT-TCGTTAGCGA-TTCGGACGGGGAAAGGGAGGCGAGATCA-GAC-TTCAAA--------CCCGGACC---------ATCC-GGCCTCGT-------CACCGCTTTAGTCGGCGGCGGCGGG---------------GTC----------AGCTCCCCTCTTG--------------CAGCCAGCGAAGGAGGGCATA---GGGTGGTTCGGG--ACATCACGACGACGACGACGACAATGACAACAACAAGTAGCTTGT-------------------------------------------
#=GS TreYok/1-196 DE BRDC01000022.1:428311-428506 Tremella yokohamensis NBRC 100148 DNA, KCNB35TY.22, whole genome shotgun sequence
TreYok/1-196                                   ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGCCTCC-TTATTCACGATCGACGCTCAATT-CGTTAGCGA-TTCGGACGGGGAAAGGGAGGCGAGATCA-GCC-TTCACCT---------CGAGCC---------ATCC-GGCCTCGT-------CACCGCTTTAGTCGGCGGCGGCGGG---------------GTC----------AGCGCTCCTTCTG--------------CTTCCAGCAGGGGAGGGCATA---GGGTGGTTCGGG--ACATCACGACGATGACGACGAGGGAA--------------------------------------------------------------
#=GS NaeEnc/1-220 DE MCFC01000016.1:98589-98808 Naematelia encephala strain 68-887.2 BCR39scaffold_16, whole genome shotgun sequence
NaeEnc/1-220                                   ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGCCTCTTTTATTCACGATCGACGCCCAATTCCTCTGGCG--CTCGGACGGGGAAAGAGAGGCAAGATAT--ATACCA-----------CTCGTAGCC--------TTGACGGTCTC----------CTGGCTTTAGTCGGCTGGGCGAG----------------GTCTTTT-----GGGCTCGACGAGCTC------------TAACACCGC-TTGTTGGGCTGAT--GGTTTGATTGGG--ATATCTTTCTTGTGTCTTCGTGTTACTTGTTTGTACATGCAGACAT------------------------------------------
#=GS TakTep/1-210 DE BCKS01000011.1:c695048-694839 Takashimella tepidaria DNA, scaffold: scaffold_10, strain: JCM 11965, whole genome shotgun sequence
TakTep/1-210                                   ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCATGCCCTCTATATTCACGATCGACGCTCAAT-TCGTTAGCGA-TTCGGACGGGGAAAGGGGGGCAAGATT--CATCTTC----------TTATTCCTCTTC------ACTTCGGCTTCT------CTGCTAGCTTTAGTCGGCTGGCG-----------------TTGTAAGACCACCAGGGCTTGGAAAGA---CTTTTCTCC----TTTCTTTCTTTCAAAGCTGA-CGAAGTGGTCAGGT--ACATTCATCCAATCT-------------------------------------------------------------------------
#=GS TakKor/1-257 DE BCKT01000014.1:349831-350087 Takashimella koratensis DNA, scaffold: scaffold_13, strain: JCM 12878, whole genome shotgun sequence
TakKor/1-257                                   -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCGCCCTCTATATTCACGATCGACGCTCAAT-TCGTTAGCGA-TTCGGACGGGGAAAGGGGGGCAAGAACC---ATTTC----------TTCTTTCTC---------ATCTCGGCTTTG------CTGCTAGCTTTAGTCGGCCGGCGG---------CTTAGACCTTTA----GGGCGTGGCGAGGTGACCCCTTTTTAGGGGGGGTTATTGTTCTCGCCGCGCTGAACGAGGTGGTTAGGG--ATATCCCTCATTTCGTATTCAGTTGTCGTCATGCATCTCATTTCTACTGTACTCTG--------------------------------
#=GS PapTer/1-210 DE JAHXHD010000621.1:6530-6739 Papiliotrema terrestris strain LS28 scaffold-620, whole genome shotgun sequence
PapTer/1-210                                   -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCGCCTTCTTTATTCACGATCGACGCCAGACTCCG-TGGCG--CTCGGACGGGGAAAGGAAGGCAAGATTGACTCTTCT------------GCTT------------GTCCAGGACCGCTCT------CTGGCTTTAGTCGGCTGGG-AGGG------------TCTGT---------AGGGCTTCTTTCTACT--------------CGTGTATGGGGAGATGCTGC--CGGATGGGTAGGG--ACATCGTGCAGCCTCTGTGCTGCTGCCTTTGTAGGCT---------------------------------------------------
#=GS VisVic/1-514 DE JADPYG010000002.1:411481-411994 Vishniacozyma victoriae isolate T18_1_22C Contig_02, whole genome shotgun sequence
VisVic/1-514                                   -----------------------------------------------AATTGTGACGTAAAAGGGGCTTAAGCTTAACGGAATTATATTTAAGGGCAGTATGCAGTCTCGAAATTATCATGCTCTTTCTCTCTTGTACTTCTCTCTTCTCATATCCACATACCAACAAGGACTTCGAGAGTCCTCCTGTGGGAAAGTCTGTTGGCTCTTTTCACTACTCTGGCTCTTACAAGGACTCAGTGGGAACTACCGAAACAGCAAGATGGTGATCCTTCCCTCTAAATAATGATATACTAACAACCCACCTATCCACACGCCTCTTTTATTCACGGCCGCCGCTCCAT--CATTGGCG--TTCGGACGGGGAAAGAGAGGCAAGATTCA-AATCC-------------GCCTATG---------ATCCAGGATGAT-------CAAATACTTTAGTCGGTGTTT--GGGG-----------TCCAT---------GGGGCTTTCTT-TAC----------------GTGTAGTA-TGGAAGCTGA--TGGGTATGGCGGGAGATCTCTTTTATATTGTAGTACTTTTTCATGTATCTCTTATTCGTATACTTTGCTCTTTGTTGCACCTCATTCAAGCCGGT--------
#=GS CryGC2/1-195 DE JALPCC010000004.1:c109730-109536 Cryptococcus sp. GC_Crypt_2 iso00_70_4, whole genome shotgun sequence
CryGC2/1-195                                   ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGCCTCTTTTATTCACGGCCGCCGCTCAAT--CGTTAGCG--TTCGGACGGGGAAAGAGAGGCAAGATTTGAAATCCA------------CTTGTTG---------ATCCAGGATCGCCA-------CGTACTTTAGTCGGTATTT--GGG-----------TTTCGT---------GGGGCTGCTCTAC-------------------TTGTAGTAGGGTTGCTGA--TGGATATTGTGGG--ATATTTCTTAGTACATAGACCGTTTAT-------------------------------------------------------------
#=GS NaeAur/1-208 DE JAKFAO010000003.1:999472-999679 Naematelia aurantialba strain NX-20 Contig3, whole genome shotgun sequence
NaeAur/1-208                                   ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGCCTC-TTTATTCACGATCGACGCCCAATTCCACTGGCG--CTCGGACGGGGAAAGAGAGGCAAGATAGACTCTACT--------------CGT-----------AGCCTGGACGATCT------CCTGGCTTTAGTCGGCTGG-GCGAGG-----------TCTGC---------AGGGCCTGAT-------------GGGCTTCGGAAACGCTGGTCGGGCTGA--TGGTCCGAGTAGG--ACATCTTTCATTCGACTGACGTATCCGCTATACTC-----------------------------------------------------
#=GS CryFla/1-208 DE CAUG01000080.1:26202-26409 Cryptococcus flavescens NRRL Y-50378 WGS project CAUG00000000 data, contig NODE_113_length_32386_cov_44_806736, whole genome shotgun sequence
CryFla/1-208                                   ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGCGCCCTCTTTATTCACGATCGACGCCAGACTCCG-TGGCG--CTCGGACGGGGAAAGGAAGGCAAGATTGACTCTTT-------------GCCT------------GTCCAGGACCGCTCT------CTGGCTTTAGTCGGCTGGGAGGGT-------------CTGT---------AGGGCTTCTTTCTACCT--------------GTGTATGGGGAGATGCTGC--CGGATGGGTTGGG--ACATTTCGTAGTATTAGCAGAATCATCCTGCGGAT-----------------------------------------------------
#=GS CryFagi/1-198 DE BCHU01000009.1:c652310-652113 Cryptococcus fagi DNA, scaffold: scaffold_8, strain: JCM 13614, whole genome shotgun sequence
CryFagi/1-198                                  -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCGCCTTCTTTATTCACGATCGACGCTCAAT-TCGTTAGCGATTTCGGACGGGGAAAGGAACGCCAGAGTT----ATTC-------------AATAAG---------ATCAAAGAGAATTT----CCTTAGACTTTAGTCGGTCGAAGA-TTTTT-TCTGTT---CTGTC----------AACCATAACC--------------------TTGTGGTTGACGGGTTGA-----TTCTATTGGG--ACATTTTTTGTAGATTTCATTGATG---------------------------------------------------------------
#=GS TreMes/1-198 DE AFVY01000172.1:253431-253628 Tremella mesenterica DSM 1558 strain Fries TREMEscaffold_4_Cont172, whole genome shotgun sequence
TreMes/1-198                                   ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGCCC-CTTTATTCACGTCCGACGCTCAAT-CCGTTAGCG--CTCGGACGGGGAAAGAGGGGCTAGATTT---ACTTCTTT---------CCCACTG---------TGCCAGGTCTA------CCACTTTGTTTTAGTCGGCAAAGGGAGATCAACGCGGGAGACTGTGT---------GGTTTT----------------------------------CGGGTGAA--CGGT-ATGGTGGG--ACATTTTATATGATGATAAGGATGATGATGCA--------------------------------------------------------
#=GS CrySki/1-467 DE BCHT01000007.1:693023-693489 Cryptococcus skinneri DNA, scaffold: scaffold_6, strain: JCM 9039, whole genome shotgun sequence
CrySki/1-467                                   -------------------------------------------------CAACTCTCCCACTAACGCTTCCCAGTGATAATATCGTAGACTTTTTGCCTGCCCTCTCGTAAATATTCTCTTGCCTCCATATCCCTTACCCATGTAATCTGAGTCTACCAGAGCTGTGACTGCGGGTTTCATTTCTTCAGGTTGTTCATCCCTCGATCAACCATTTCATCATCGTTTCGTTTAGTATTTTACAAGGAATGTATCAATTGACGACACACAATTCCATCTCTCTATAATTCCTCCTCTCCATCTCATCCCACCACACGCCCTCTTTATTCACGATCGACGCTCAAT-TCGTTAGCGA-TTCGGACGGGGAAAGGGGGGCCAGATTTATCACAAGCCCAAATAC---GATTCGG---------GACCAGGAACTT-------CGTGGACTTTAGTCGGTCGGGGAGG-------------TATGT-----------GGTCCGTTGGACTGATCGATGGTGTAGTGTCC---ATTGGTTGGTTGGTG-GAATTTTTTGGG--ACATCTTTTG------------------------------------------------------------------------------
#=GS PapLau/1-250 DE JDSR01000848.1:58741-58990 Papiliotrema laurentii RY1 contig_881, whole genome shotgun sequence
PapLau/1-250                                   -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCGCCTCTTTTATTCACGATCGGCGCCAGAT-TCCGTGGCG--TCCGGACGGGGAAAGAGGGGCAAGATTCA-AATCC-------------TATTT-----------GTCCAGGATCGCTCA-----CCCTGCTTTAGTCGGCGGGGGAGGG------------TCCGT-----AGGGCGGGTCGAGA--------------------------CTTTGAGGGCTTGATCGGCTGCCGGATGG--ATAGGGAGATTTGTGCGAGCCAAATGGGGCGTTTCGGTCGAGGCTCACTTGTGACCAAGGCGGCTTACAAGGAATCGTTGTA------
#=GS ApiMyco/1-196 DE CP053621.1:c8744767-8744572 Apiotrichum mycotoxinovorans strain CICC 1454 chromosome 2
ApiMyco/1-196                                  -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAGCCCCTTTTATTCACGATCGTCACCCAAT-TCATTGGTG--CACGGACGGGGAAAGGGGGGCGAGAACG---ACCTCTC----------GTGCC-----------ATCCAGGCGCGCA--------CGGGCTTTAGTCGGCCGGTGCGTGG--------CCGTCTGTGCC-------GGGCCAGCAGCCGCT--------------------------GGGCCGTCCGCGGGTGGACGAGG--ACAGCTGTAAATATCTTGTGACTCTTGT------------------------------------------------------------
#=GS ApiBra/1-207 DE JAMALJ010000023.1:324322-324528 Apiotrichum brassicae strain M2204 ctg_23, whole genome shotgun sequence
ApiBra/1-207                                   -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCGCCCCTTTTATTCACGATCGTCACCCAATTCCACTGGTG--TTCGGACGGGGAAAGGGGGGCAAGAGCG--ATACTC------------GTCT------------GTCCAGACGCGAC--------CGGGCTTTAGTCGGCCTAATCGTAG--------TCACTTGT-----------GGCGTGCTGGAGCTCTCC----------------------AGCTCGTCCGCGGGTGGGCGAGG--ACATCTGAACTCGAAGTGTAGATTTATATGTATTGTTCTG------------------------------------------------
#=GS VanFra/1-203 DE BEDY01000004.1:1465155-1465357 Vanrija fragicola DNA, scaffold: scaffold_4, strain: JCM 1530, whole genome shotgun sequence
VanFra/1-203                                   -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAGCCCTCTTTATTCACGATCAACGCCTAATTCCACTGGCG--TTTGGACGGGGAAAGGGGGGCAAGATTAT-AATCTA------------GTCT------------GCCCAGGCGCGACG-------CGGGCTTTAGTCGGCCTTCGCGTGACCA--------CTTGTGATAGCTTTGGAGTGTTTCCTCC---------------------------AGAGTCATCCGCGGGTGGGCTAGG--ACATTTCAACCTGTACATTTTTATCTTC------------------------------------------------------------
#=GS TriGue/1-207 DE BCJX01000014.1:c417517-417311 Trichosporon guehoae DNA, scaffold: scaffold_13, strain: JCM 10690, whole genome shotgun sequence
TriGue/1-207                                   -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAGCCCCTTTTATTCACGATCGGCACCCAATTCCTCTGGTG--TCCGGACGGGGAAAGGGGGGCGAGAGT---ATCACT-----------GGTCC------------GTCCAGGCGCGCG--------GGGGCTTTAGTCGGCCCC------------------TTCGTG-ACCATTTCTGGCATCCTT------------------GGTTCACACGCCAAGGTTGTCGCCGGGTAGGCCAGG--ACATTTCACATGCATCAGTCCACTGTACAGTATTCG----------------------------------------------------
#=GS CutDas/1-209 DE BEDX01000005.1:c1472759-1472551 Cutaneotrichosporon daszewskae DNA, scaffold: scaffold_5, strain: JCM_11166, whole genome shotgun sequence
CutDas/1-209                                   -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAGCCCCTTTTATTCACGATCGGCGCCCAATTCCACTGGCGA--CCGGACGGGGAAAGGGGGGCAAGATAG--ACACCAC------------TTC------------ATCCAGGCGCGA--------CGCGGTTTTAGTCGGCTG-CGCGTGACCAC--------CTGT---------GGCGCTCCTT----------------------GCACCGTGCAAGGTCGTCCTCGGATGGGCTGGG--ACATCTCGTCGTACTCTGTATCCTTCTGCATCATCATGTCT-----------------------------------------------
#=GS TriCor/1-206 DE JXYL01000004.1:c1636958-1636753 Trichosporon coremiiforme strain JCM 2938 scaffold_0004, whole genome shotgun sequence
TriCor/1-206                                   ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGCCCCTTTTATTCACGATCAGCGCCCAACTCCACTGGCG--TCTGGACGGGGAAAGGGGGGCAAGAACG--AAACCA------------GTCT------------GCCCAGGCGCGCCG-------AGGGCTTTAGTCGGCTCGAGGGTGCTATCGTGG----CTGT--------CTATGCA---------------------------------GGTAGACGGTCCTCGGGTAGGCTGGG--ACATTTTTTCCCTTCTATTTGTGTGTGTTTGATCCTTTGGGTC---------------------------------------------
//

• Image source 3.5:

# STOCKHOLM 1.0
#=GF RW van Nues, September 2023
#=GF https://coalispr.codeberg.page/paper
#=GS HACAcnag12266/4-295 DE ncrna 3:1284233-1284524:1
HACAcnag12266/4-295                         ------------------------TAGGGCCCGGCTCGATCTTCCTTCT---------------AGGAAGCTCTC-AGCATT-TTCGACTGATTGGAAGCGTCCTTCGGTCTTGTAT--------------------------------------------CGAACTCGGTTGA-CGTATATTTCC---GGTCGACGGGA-----------CACGGCTT--CCCCGAGATAGACTGCTGTCGTTGACCTTGCTGATTCCCTAACTGCTGGCCTTTCGGCGGGCG-----------------------------------------------GTTGGGTTGAGTCGGCAGTATAGGACAG-----------------------------------------TGATGGTGGCAACCGTTATTTCATATCCTTGCCT------AGGCGATTCGCCCATTAGGAGTTGGGAGAAACCAACGGATTGACATAC---------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS transcript-with-HACAcnag12266/1-403 DE ncrna 3:1284231:1284632:1
transcript-with-HACAcnag12266/1-403         ---------------------TACTAGGGCCCGGCTCGATCTTCCTTCT---------------AGGAAGCTCTC-AGCATT-TTCGACTGATTGGAAGCGTCCTTCGGTCTTGTAT--------------------------------------------CGAACTCGGTTGA-CGTATATTTCC---GGTCGACGGGA-----------CACGGCTT--CCCCGAGATAGACTGCTGTCGTTGACCTTGCTGATTCCCTAACTGCTGGCCTTTCGGCGGGCG-----------------------------------------------GTTGGGTTGAGTCGGCAGTATAGGACAG-----------------------------------------TGATGGTGGCAACCGTTATTTCATATCCTTGCCT------AGGCGATTCGCCCATTAGGAGTTGGGAGAAACCAACGGATTGACATACATTTCCTCTGTAATTACCACACATGAACAATTATTTTTATGGCCCAGCAAGTCTGTTTCGAGTT-CATTTTTTCTGCTGTGTATCGTTATGCGATCGTGTGCTTCGTAT--------------------------------------------------
#=GS from-CNAG_12266/1-291 DE 3: [735,445 - 735,736] (+291)
from-CNAG_12266/1-291                       -------------------------AGGGCCCGGCTCGATCTTCCTTTT---------------AGGAAGCTCTC-AGCATT-TTCGACTGATTGGAAGCGTCCTTCGGTCTTGGAT--------------------------------------------CGAACTCGGTTGA-CGTATATTTCC---GGTCGACGGGA-----------CACGGCTT--CCCCGAGATAGACTGCTATCATTGACCTTGCTGAATCCCTAACTGCTGGCCTTCAGGCGGGCG-----------------------------------------------GTTGGGTTGAGTCGGCAGTATAGGACAG-----------------------------------------TGATAGTGGCAACCGTTATTTCATATCCTTGCCT------AGGCGATTCGCCCATTAGGAGTTGGGAGAAACCAACGGATTGACATAC---------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS H99/1-403 DE CP003822.1:c735740-735338 Cryptococcus neoformans var. grubii H99 chromosome 3, complete sequence
H99/1-403                                   ---------------------TACTAGGGCCCGGCTCGATCTTCCTTTT---------------AGGAAGCTCTC-AGCATT-TTCGACTGATTGGAAGCGTCCTTCGGTCTTGGAT--------------------------------------------CGAACTCGGTTGA-CGTATATTTCC---GGTCGACGGGA-----------CACGGCTT--CCCCGAGATAGACTGCTATCATTGACCTTGCTGAATCCCTAACTGCTGGCCTTCAGGCGGGCG-----------------------------------------------GTTGGGTTGAGTCGGCAGTATAGGACAG-----------------------------------------TGATAGTGGCAACCGTTATTTCATATCCTTGCCT------AGGCGATTCGCCCATTAGGAGTTGGGAGAAACCAACGGATTGACATACATTTCCATTGTAGTTACTACTTATGAACAATCACTTTCATGGCCAAACAAGTTCGTTTCGAGTT-CAGTTCTTCTGCTATGTATCATCATGCAATCGTGTGCTTTGTAT--------------------------------------------------
#=GS R265/1-400 DE CP025759.1:1492339-1492738 Cryptococcus gattii VGII R265 chromosome 1, complete sequence
R265/1-400                                  ---------------------TACCAGGGCCCGGCTCGATCTTCCTTTT---------------AGGAAGCTCTC-AGCATT-TTCGACTGATTGGAAGCGTCCTTCGATCTTGTAT--------------------------------------------CGAACTCGATTGA-CGTATATTTCC---GGTCGACGGGA-----------CACGGCTT--CCCCGAGATAGACTGCTGTCATTGACCTTGCTGATTCCCCAACTGCTGGCCTTTAGGCGGGCG-----------------------------------------------GTTGGGTTGAGTCGGCAGTTTAGGAAAG-----------------------------------------TGATAGTGGCAACCGTTATTTCATATCCTTGCCT------AGGCGATTCGCCTATTAGGAGTTGGGAGAAACCAACGGATTGACATACATTTCCTCTGTAGTTACCGCACATAATCGATCCCCTGTATGGCCAAGCCTGG----TTCGAGTTACAATTCTTCTGATATGTATCGTATTGTGGTCTTGTGCTTCGTAT--------------------------------------------------
#=GS WM276/1-419 DE CP000288.1:1251613-1252031 Cryptococcus gattii WM276 chromosome C, complete sequence
WM276/1-419                                 ---------------------TACCAGGGCCCGGCTCGATCTTCCTTTT---------------AGGAAGCTCTC-AGCATT-TTCGACTGATTGGAAGCGTCCTTCGATCTTGTAT--------------------------------------------CGAACTCGATTGA-CGTATATTTCC---GGTCGACGGGA-----------CACGGCTT--CCCCGAGATAGACTGCTGTCATTGACCTTGCTGATTCCCCATCTGCTGGCCTTTAGGCGGGCG-----------------------------------------------GTTGGGTTGAGTCGGCAGTTTAGGAGAG-----------------------------------------TGATAGTGGCAACCGTTATTTCATATCCTTGCCT------AGGCGATTCGCCTATTAGGAGTTGGGAGAAACCAACGGATTGACATACATTTCCATTGTAGTTACCGCATATAATCGATGCCGTGCATAACCAAGCCTTG----TTCGAGTTACAATTCTTCTGTCATGTATCGCATTGTGGTATTCTGCTTTGTATATCGAGCGTCTGCAGGTTT-------------------------------
#=GS CryWin/1-457 DE AWGH01000002.1:c462156-461700 Cryptococcus wingfieldii CBS 7118 supercont1.2, whole genome shotgun sequence
CryWin/1-457                                ---------------TTCTTCATCAAGGGCCCGGTTCGATCATCCTTAT---------------AGGATGCTCTCGAGCATT-TTCGACAGATTGGAAGCGTCCCTTTCTCTCGGTACATCACCA--------------------------------GAG-GAGATTCGATTGA-CGTATATTTCC---TGTCGACGGGA-----------CACGGCTT--CCCCGAGATAGACTGTCATCTTTGGCTTTGCTGATTCCCTTGCGTCTAGGCTTTCGGGCTGGGGC---------------------------------------------AATGGGTCGAGTCGGCAGTATGGGTCAG------------------------------------------GGTGGGAGCAACCGTTATTTCATATCCTTGCCT------AGGCGCTTTGCCTTTGAGGAGTTGGGAGAAACCAACGGATTGACATACCTTCTTTAT---ATCTTCTAGTCTCAATGCAAACGTGCTTCAAATACTTTTGTCCAGCTCCATCGTGCTTGTAGGGCTCATCGATTCCTGGGCTGGACGGGCGTATGCATCGCGACTGATTTTCTGCGCTCAACAAGCACTGTCAA-------------
#=GS CryAmy/1-308 DE MEKH01000001.1:c1417264-1416957 Cryptococcus amylolentus CBS 6273 supercont2.1, whole genome shotgun sequence
CryAmy/1-308                                ------------------------AAGGGCCCGGTTCGATCATCCTTATA---------------GGATGCTCTCGAGCATT-TTCGACAGATTGGAAGCGTCCCTTCCTCTC---------------------------------GGTACATCACCAGAGGAGATTCGATTGA-CGTACATTTCC---TGTCGACGGGA-----------CACGGCTT--CCCCGAGATAGACTGTCATCTTTGGCTTTGCTGATTCCCTTGCGTCTAGGCTTTCGGGCTGGGGC---------------------------------------------AATGGGTCGAGTCGGCAGTATGGGTCAG------------------------------------------GGTGGGAGCAACCGTTATTTCATATCCTTGCCT------AGGCGCTTTGCCTTTGAGGAGTTGGGAGAAACCAACGGATTGACATACCTT------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS CryFlo/1-308 DE RRZH01000002.1:c1534316-1534009 Cryptococcus floricola strain DSM 27421 chromosome 2, whole genome shotgun sequence
CryFlo/1-308                                ------------------------AAGGGCCCGGTTCGATCATCCTTATA---------------GGATGCTCTCGAGCATT-TTCGACAGATTGGAAGCGTCCCTTCCTCGT---------------------------------GGTACATCACCCGAGGAGATTCGATTGA-CGTACATTTCC---TGTCGACGGGA-----------CACGGCTT--CCCCGAGATAGACTGTCATCTTTGGCTCTGCTGATTCCCTTGCGTCTAGGCTTTCGGGCTGGGGC---------------------------------------------AATGGGTCGAGTCGGCAGTATGGGTCAG------------------------------------------GGTGGGAGCAACCGTTATTTCATATCCTTGCCT------AGGCGCTTTGCCTTTGAGGAGTTGGGAGAAACCAACGGATTGACATACCTT------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS CryVH5/1-329 DE JANBXI010000002.1:109631-109959 Cryptococcus sp. VH57_BW 2, whole genome shotgun sequence
CryVH5/1-329                                ------------------------ATGGGCCCGGCGCGATCTTCCTTCTA---------------GGGAGCTCTC-CGCATC-TTCGACTGACTGGAAGCGTCCCCCTCGCGG-----------------------CACCCGCACATCGCGGGCGCCCGACCCCATTCGATTGA-CGTATATTTCC---TGTCGACGGGA----------CCACGGCTT--CCCCCAGATAGACCTCTCC----TTGCCTC--GGCCCTGC-------TGGTTCCCCGGTTCTTGTAACCCTCGCGAGAGGGTGGCAGGG----------------------CTGGGTTGAGCCGGCGGATATGGCTGG----------------------------------------CGAGGGGGGGCAACCGTTATTTCATATCCTTGCCT------AGGCGATTCGCCTTTGAGGAGTTGGGAGAAACCAACGGATTGACATTTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS CryGC3/1-301 DE JALPCB010000078.1:74576-74876 Cryptococcus sp. GC_Crypt_3 iso00_45_78, whole genome shotgun sequence
CryGC3/1-301                                -----------------------CATGGGCCCGGCTCCACCTCTCTTCTA---------------GAGAGCTCTAGAGCATT-CTCGACAGATTGGAAGCGTCCCCTCTCTTT--------------------------------------GTAACTATCGATTGGCCGATTGA-CGTACGATTCC---TGTCGACGGGA-----------CACGGCTT--CCCCTAGACCCAACCCCGTTCCCTCGCATAGCGGCGCTCTTT----TCGGTTCCCAAGTCC-------------------------------------------------GCTTGGTCGAGCTGCCGAGACGCCGT---------------------------------------TGAGAGCTCGGGGCAACCGTTATTTCATATCCTTGCCTAA----AGGCGATTCGCCATTGAGGAGTTGGGAGAAACCAACGGAATGACATCTATA------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS CryGC5/1-301 DE JALPBZ010000070.1:c5368-5068 Cryptococcus sp. GC_Crypt_5 iso00_58_70, whole genome shotgun sequence
CryGC5/1-301                                -----------------------CATGGGCCCGGCTCCACCTCTCTTCTA---------------GAGAGCTCTAGAGCATT-CTCGACAGATTGGAAGCGTCCCCTCTCTTT--------------------------------------ACTAGTATTGATTGGCCGATTGA-CGTACGATTCC---TGTCGACGGGA-----------CACGGCTT--CCCCTAGACCCAACCCCGTTCTCTCGCATAGCGGTGTTCT----TGTCGGTTCCCAAGTCC-------------------------------------------------GCTTGGTCGAGCTGCCGAGGCGCCGT---------------------------------------TGAGAGCTCGTGGCAACCGTTATTTCATATCCTTGCCTAA----AGGCGATTCGCCATTGAGGAGTTGGGAGAAACCAACGGAATGACATTTATA------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS CryGC7/1-309 DE JALPBX010000092.1:c39967-39659 Cryptococcus sp. GC_Crypt_7 iso00_79_92, whole genome shotgun sequence
CryGC7/1-309                                -----------------------TATGGGCCCGGCTCCACCTCTCTTATA---------------GAGAGCTCTAGAGCATT-CTCGACAGAATGGAAGCGTCCCCTTT--------------------------------CTTTAGTATCAGTATTATTGATCGGCCGATTGA-CGTACGATTCC---TGTCGACGGGA-----------CACGGCTT--CCCCTAGACTCAACCTCGTTTTCTCAATTAGCGACGTTCTTT--CGTCGGTTCCCAAGTCC-------------------------------------------------GCTTGGTCGAGCTGACGATCCGTCGTTGA---------------------------------------GAGGACGAGGCAACCGTTATTTCATATCCTTGCCTAA----AGGCGATTCGCCATTGAGGAGTTGGGAGAAACCAACGGAATGACATTTATA------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS CryGC2/1-374 DE JALPCC010000001.1:c616002-615629 Cryptococcus sp. GC_Crypt_2 iso00_70_1, whole genome shotgun sequence
CryGC2/1-374                                -----------------------CATGGGCCCGGCTACACCCTCACTATG---------------TGAGGCTCTATAGCATTTCTCGACAGATTGGAAGCGTCCCCCTTCAAT--------------------------------------------GTAAAGGGATCGATTGA-CGTATATTTCC---TGTCGACGGGTAGTTT------TACGGCTT--CCCCTAGAAAGACTTTCCTCTTTATTTCAACACCTTTATCGCCCATCTTTCGAGGTGGTGATCATCGACTCGCTCCGTCTATTTTCACACGCGATTGTCGAGTTGAAGATTTGACGTTGATGCTTGTTGGTGGGAATGATTTTGGAGTAAAAA----------------------TGAGAGGAAAAGAGAACCGTTATTTCATATCCTTGCCT------AGGCGATTCGCCAATGAGGATTTGGGAGAAACCAACGGACCGACATATATTACTTT-------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS CrySki/1-567 DE BCHT01000013.1:c116970-116404 Cryptococcus skinneri DNA, scaffold: scaffold_12, strain: JCM 9039, whole genome shotgun sequence
CrySki/1-567                                ------------------AACCCCAAGGGCCCGGTTCGATCCTCTCTCCAGT-----------AGTGAGGCTCTCGAACAA--TTCGACTGATCGGAAGCGTTCCCCTCTCGTGCAGAATCACACAGATT---------------------CTGCACGGGCGAAATTCGATTAA-CGTAAATTTCC---TGTCGACGGGA----------CTACGGCT---CCCCTAGATCGACTTTTCCACCTGTTCAT-----CTCCCTTCACCCCGGCCCTTCACCGCTCGTCCTCTTCGGAGGATCGATGACCTGTCCGTCTGGTCGCCTCGCTCCCGAAAGGTTGATGTGGGGTTGATCAGACGTGTTGGGGAATGGTAGAGGACGGGAGAGGTTGAGGTTGGACGGTGGGGAGGACCCGTTATTTCATATCCTTGCCT------AGGCGATTCGCCCTTGAGGTCTTGGGGCAAACCAACGGATTGACATATTATTAGTTATTGTCTTTGTCTATCTCTTTAGTCTATATGCAATGTGATATCGCAATGTCGTGCCAGAAACAGCGTCAACGTTGGCTTCCTGCAGCCAAAAAGATCTCGAAGATCTTGAATAACGCGACTCAGTTTCGTTCTCTCTTCCATTCCACTTCA
#=GS SaiPod/1-476 DE RSCD01000009.1:368700-369175 Saitozyma podzolica strain DSM 27192 scaffold_9, whole genome shotgun sequence
SaiPod/1-476                                ---------------TTCCTCTTCATGGGCCCGGCGTCATCTCACCTCT---------------GGTGAGCTCTGTCGCATT-CTCGACAGATCGGAAGCGTCC-GCGA----GGTCACACCTT-----------------------------CGGGAGTCCTCGCTCGATTGA-CGTACATTTCC---TGTCGACGGGAG----------TACGGCTT--CCCCTCTATCGACCCTGTTCCCTCGTCCA-CTCCCCCCCTCGCCCGACGTCCGTCGG----------------------------------GACCGGTC-CTTCGCTCCCCC---GTCAATTGGGATGGGGTC-GACGTGTCGGATCGGGAAGAGGGACGGTCGATGTGGACGAGGGACGGTAGGG--CTTCCGTTATTTCATATCCTTGCCT------AGGCGATTCGCCCCTCGGGATTTGGGAGAAACCAACGGAATGACACGCCGACACGACGACACGACGAGGTTTGGCTTGTGTTGTTGTCGTGCGAGTATCTTCTTTGTTTGAGTTCTTGAGTTCTTGCTTGATTTGATGCATCTCCACCTTCTATGAGCTAACAGC------------------------------------------
#=GS KwoHev/1-447 DE ASQC01000194.1:28891-29337 Kwoniella heveanensis CBS 569 cont2.194, whole genome shotgun sequence
KwoHev/1-447                                -----------------TCAACTCATGGGCCCGGCTCGATCCTCCTTTT---------------AGGAGGCCCTC-AGCATTCTTCGACTGAACGGAAGCGTTGCGCCGAGTACCTTGG------------------------------------------TGAACTTGATTGA-CGTATATTTCC---TGTCGACGGGA-----------CACGGCTT--CCCCTAGAAAGACTTCTTCGAGCTATTTCGTCAGTGCTCTCCCTCTA-ATCTTTC-------------------------GGTTCCCTGTCTTCTATTCGCAAGG----ATAGGAGATGGGTCGAGCTGATCGACCG---------------AAAGAGCCATGGGCGACT--------CGGGGAC-AGCAACCGTTATTTCATATCCTTGCCTAAT----GGCGATTCGCCATTGAGGAGTTGGGAGAAACCAACGGTATGACATATCTTCTCTTCATAGCAATCAGCATAGAATGTTCCCTTCGTAGTAAAGCCAGGTTCCAAACAGTGGATCTCAACAATCATGCACTATCCTCCCCTGTTACCAAATGCCAAG--------------------------------------------------
#=GS KwoSha/1-462 DE NQVO01000013.1:c186195-185734 Kwoniella shandongensis strain CBS 12478 scaffold00013, whole genome shotgun sequence
KwoSha/1-462                                -------------------TCTTCAAGGGCCCGGCTTGATCTTTCTTAT---------------AGAGAGCTCTCAAGCAATTTTCGACTGATTGGAAGCGTCCCACC-TTTTCTTAGG------------------------------------------CAATTTCGATTGA-CGTATATTTCC---TGTCGACGGGA-----------CACGGCTT--CCCCTAGATTGAACCCCTCACTTCTCAGCCCACCAGTTCCCGA---ACGTTCTCCTT--------------GTCTTTTCTCCTCCTTTCGTGTTCGCG--CGAAAGTCGACGGGGGATT--GCGAGGATGAGTGTTCGGTCGAGCCAGTGGATTCATGTTGGG----------------AGAGAGGGGCAACCGTTATTTCATATCCTTGCCTAA----AGGCGATTCGCCATTGAGGAGTTGGGAGAAACCAACGGATTGACATCCTTTTCATAAAAACACATGATTATATGCACATTATCTACTCAAAACACTGCCGACGTTCACGTGCATCGCTGCGCCAGTCTGCACTGGAAATGATGCACACCTTCCATTT--------------------------------------------------
#=GS KwoDej/1-440 DE ASCJ01000004.1:c1296699-1296260 Kwoniella dejecticola CBS 10117 cont1.4, whole genome shotgun sequence
KwoDej/1-440                                -------------------TCTTCATGGGCCCGGCTCGATCCACCTTTTATA------------AGGAGGCTCTC-AGCATC-TTCGACTGATTGGAAGCGTCCCCTTT----------------------------------------------------CGTACTTGGTTGA-CGTATATTTCC---TGTCGACGGGTATAGTTTTT--TACGGCTTT-CCCCTCGAAAGATCACTTATATTCTCTTCGCTACTTCTCCT----TCGGTTCCCCTC-------------------AGCCCGC--GTGTG-CGACCTTT-------------------GGGTCGAGCTGAAGGAGAAAGAAGAGTCAT---------------------------------AAAGCGACAACCGTTATTTCATATCCTTGCTTAATT--AGGTCATTGATCTTTGAAGATTTGGGAGAAACCAACGGATTGACATACTTTTTCGTAGAGCAGTGATAGTTTCAGTCTCAACTTGTTGAATTCCGCATGCAGAATTGTGCATGCTCATGAACAGCGACACTGGTTGGGGTAAATGATTAGCAGTTGTTTGTCATCACGCCCA-----------------------------------
#=GS KwoBes/1-312 DE ASCK01000008.1:273332-273643 Kwoniella bestiolae CBS 10118 cont1.8, whole genome shotgun sequence
KwoBes/1-312                                -----------------------TATGGGCCCGGCTCGATCCTCTCTCCT--------------GAGAGGCTCTC-AGCAACATTCGACTGAATGGAAGCGTCCCCCCT-----------------------------CATCCTTCTCTTAGGAGATGGGAGGAGAATGGTTGA-CGTATATTTCC---TGTCGACGGGT--AGTTTCT--TACGGCTTT-CCCCTCGAGAGATTCCTTCTCTCCCTTTTCCTCA-----------CTGGTTCCTCTTTTC------------------------------------------------------------------------------------ACGAAGGGTT-GAGCCGGCTGGG----GAGGGAGAGAAAGTGGACAACCGTTATTTCATATCCTTGCTTAA---ATGGTCGTTGATCTTTGAAGATTTGGGAGAAACCAACGGATTGACATCTATT------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS TreFuc/1-386 DE LBGW01000095.1:16338-16723 Tremella fuciformis strain tr26 contig95, whole genome shotgun sequence
TreFuc/1-386                                ---------CTCTTTCTTCTCTTCATGGGCCCGGCTCCTCA-----------------------GG----------AGCAGT-ATCGACAGATTGGAAGCGTCCCGCTCAT----------------------------------------------CAGAGTCACCTGGTTGA-CGTACATTTCC---TGTCGACGGGAAGTT-------TACGGCTT-GTCCCTCGATAGACCGTGGTGGGAGACGGTTCCCCGGACCGCCAAACCCAGGCGCCGCAAGGCCTTGGGCGCGGACGGCTCTCGCAACGCCGCCTTTCCGCCTGCTCGCAAGAG----CTGGGCGTTGAGAGGAGGAGCGAAGTGGGTGCTGGAAGGTCTGGGTTGTAGCTGTCTCCTGCCAATACGGAGCACCGTTATTTCATATCCTTGCCTATTGTAGGGCGATTCGCCCATGAGGATTTGGGAGAAACCAACGGAGCGACATTCCTT------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS TreYok/1-387 DE BRDC01000027.1:c541360-540974 Tremella yokohamensis NBRC 100148 DNA, KCNB35TY.27, whole genome shotgun sequence
TreYok/1-387                                ----------TCTTTCTTCTCTTCATGGGCCCGGCTCCTTA-----------------------GG----------AGCAGTA-TCGACAGATTGGAAGCGTCCCGGCTCGT---------------------------------------------CAGAGCCACTCGGTTGA-CGTACATTTCC---TGTCGACGGGAAGTA-------TACGGCTT-GTCCCTTGATAGACCGTGGTGGGAGACGGTTCCCCGGACCGCCAGACCCAGGTGCCGCAAGGTCCTGGGCGAGGACGGCGCTCGCGACGCCGCCTTTCCGCTTGCTCGCGAGAG---TCTTGGCGTCGAGAGGAAGAGCGAAGCGGGTGTTGGAAGGTCTGGGTTGTAGCTGTTTCCCGCCAATACGGAGCACCGTTATTTCATATCCTTGCCTATTGTAGGGCGATTCGCCCATGAGGATTTGGGAGAAACCAACGGAGCGACATTACTT------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS TreMes/1-316 DE AFVY01000278.1:41352-41667 Tremella mesenterica DSM 1558 strain Fries TREMEscaffold_10_Cont278, whole genome shotgun sequence
TreMes/1-316                                -TTCTCCCCCTCTTCTTCTTCTTCATGGGCCCG-------------------------------------------------TTCGACAACTTTGGAAGCGTCCCCCCT----------------------------------------------------------AGATTGA-CGTAAATTTCCAT--CCCGACGAGAGT---------TACGGCTTT--CCCTATATCAACCTCATATCTTTTTCTCTCTTTTTCATCATCGTCGATTTCTTCGAACCATCTCATCTTTTCCGTCTAATTTGACGTTG--------------AGAAGGTGAACAATGGGAAGATGTTGTTAAAGAAG-----------------------------------GACATTAGATAGGAACACTGTTATTTCATATCCTTGCCTAAT----GGTCATTGACCTTTGAGGTTTTGGGAGAAACCAACGGGGTGTCATCTCTT------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS KocImp/1-401 DE NBSH01000006.1:c327999-327599 Kockovaella imperatae strain NRRL Y-17943 BD324scaffold_6, whole genome shotgun sequence
KocImp/1-401                                ---CCTCTTTTTCTTCTTTCTACCATGGGTCCGGCTGC-CA-----------------------GGTT----------CA--CCTCGATGCATTGGCATTGACCAGGACCTGGTAGCATCACTCGACAGATTGGAAGCGTCCGCTTTTCACGCTTGTGGAAGGCATTCGATTGA-CGTATATTTCC---TGTCGACGGAATGAAG------AACGGCTTCGTCCCTAGAGAGATTCTTCACATCATTCTAGGTTCATTGATCGGCTGGGCGTCGTCAAACACCCTGGATACCTGCTTCTTCGCTCCTCTTTCTTT-----------------------AGAGTCGATGTGT------TGAGGTTGG-GGAATGGTCTTTGGATCCTGT-------TTGAGATCGGAGAGCTTCCGTTATTTCATATCCTTGCCTA----AGGGCGATTCGCCATTGAGGAGTTTGGAAAAACCAACGGAATGACATGTATG------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS NaeEnc/1-377 DE MCFC01000013.1:242080-242456 Naematelia encephala strain 68-887.2 BCR39scaffold_13, whole genome shotgun sequence
NaeEnc/1-377                                -----------------TCTTCCCAAGGGCCCGGCTCGTCTTGCTTT-----------------GCAAGACGT---AGC-TT-TTCGACAGATTGGAAGCGTCCCCCCTCATCTCTCTTTTCC-----------------------------GGAAAGATAGAGAATCGATTGA-CGTATATTTCC---TGTCGACGGGTATAGTATCTTTTACGGCTACTCCCCTAGATAGACCTCTACC-TTTCTTCTTGTCTCTCCAATGTCGCTTCCTTTCGGGGGATGATCATGACCTTCGCTCCCCTGCTTTTCATT---------------------AGGTGGGGTTGACGTGT------CGGTTGTG--GGAATGA-TTTGGGGTAGATA-------AGGTGGGTTGGAGGAATCCGTTATTTCATATCCTTGCTTAA----AGGCGGTTCGCCATTGAGGATTTGGGAGAAACCAACGGAATGACATTCTAT------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS NaeAur/1-406 DE JAKFAO010000005.1:361372-361777 Naematelia aurantialba strain NX-20 Contig5, whole genome shotgun sequence
NaeAur/1-406                                --------------TCTTCTCTCCAAGGGCCCGGCTCGCCTTGCTC------------------GCAAGGCGC---AGCG--TCTCGACAGATTGGAAGCGTCGCTCTCGCTCCCCGCTTCTGCTCTGTTCATC--------AGAGTGGCAGTCGAGGAGCGAGGCTTGATTGG-CGTATATTTCCC---GTCGACGGGTATAGTTTCTT-TACGGCTACTCCCCCAGATAGACCTCTACCGCTCGCTCCGGCTCGTGTCGCTTCTTCACGGGATGATCGCGCCTTCGCTCCCCTGCTTTCCTCAGTCTCCAACT----------------GTGGAGTGGGGTCGACGTGT------CGG-CGCG--GGAATGGCTCGAGGCGTGAGC-------GCGCGGGAAAGAGGAGTCCGTTATTTCATATCCTTGCTTAA----CGGCGGTTCGCCATTGAGGATTTGGGAGAAACCAACGGAATGACATGCCTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS PapLau/1-365 DE JAAZPX010000008.1:c731582-731218 Papiliotrema laurentii strain IF7SW-F4 scaffold14_cov198, whole genome shotgun sequence
PapLau/1-365                                --------------ACTTCTCTTCATGGGCCCGGCTCAACGTCCCCGTATCTGTCTCTCAGTGCGGGTCGACCGCGAGCTCTTATCGACTGATTGGAAGCGTCCGA-------T---------------------------------------------------GACAATCGA-CGTATATTTCC---TGTCGACGGGAAAGA-------ACAGGCGTTTCCCCTAGATAGACCTCGGTCCTCGTTATCTTCCTTCTTGTCGCGCCTCCTTGTCTTTGG-ACAGGAGGCATACCAGCCT-TCGCTCCTCTGCTTTC-------------------GCGGGGTCGACGTG-------GAGGCTG---GGAATGGCTCGAGTGGGGGGT--------CGAGGGCCAGAGGGGTCCGTTATTTCATATCCTTGCTTTG----AGGCGATTCGCCGAGGAAGATTTGGGAGAAACCAACGGAATGACATTTTTG------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS CryFla/1-352 DE CAUG01000315.1:13805-14156 Cryptococcus flavescens NRRL Y-50378 WGS project CAUG00000000 data, contig NODE_509_length_73942_cov_47_611656, whole genome shotgun sequence
CryFla/1-352                                ----------------TCCTCTTCATGGGCCCGGCTC--TGTCCCCCCTCT------------GGGCCACGGACAGAGCATA-CTCGACAGAACGGAAGCGTCGCGCAGTCTTCCACA------------------------------------GGAAGATCTGCACCGATTGA-CGTATATTTCC---TGTCGACGGGACGTTT------TACGGCGTACTCCCCAGATAGACCCCTCGGTCC------------GACGGCCCCTCCCATTGCACTGCCTCACGGCGGTATAACCTCTTCTCGCTCCCTTC---------------------------GGGTCGATGTG-------GGAGTTGGT--GAATGGTGGGAG-GGGGCGT-------TGGACCGTGCTGGGCCTCCGTTATTTCATATCCTTGCTT------AGGCCGTTGGCTGTTGAAGATTTGGGAGAAACCAACGGAGTGACATCTGTT------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS PapTer/1-352 DE JAHXHD010001091.1:c6300-5949 Papiliotrema terrestris strain LS28 scaffold-1090, whole genome shotgun sequence
PapTer/1-352                                ----------------ACCTCTTCATGGGCCCGGCTC--TGTCCCCCCTCT------------GGGTCACGGGCAGAGCATA-CTCGACAGAACGGAAGCGTCGCGCAGTCTTCCACA------------------------------------GGAAGATCTGCACCGATTGA-CGTATATTTCC---TGTCGACGGGACGTTT------TACGGCGTACCCCCCAGATAGACCCCTCGACCCC-----------GACGGCCCCTCCCATCGCGCCGCCTCACGGCGGTATAACCTCTTCTCGCTCCCTTC---------------------------GGGTCGATGTG-------GGAGTTGGT--GAATGGTGAGAG-GGACGGT-------CGGGTCGAGC-GGGCCTCCGTTATTTCATATCCTTGCTT------AGGCCGTTGGCTGTTGAAGATTTGGGAGAAACCAACGGAGTGACATCTGTT------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS TriGue/1-327 DE BCJX01000004.1:c327494-327168 Trichosporon guehoae DNA, scaffold: scaffold_3, strain: JCM 10690, whole genome shotgun sequence
TriGue/1-327                                -------AGTCTTCTTCTTTCATCAAGGGCCCGGTCCC-AGCCGTCTGTCT-------------ATCGGATAGCTGGGA-CATTTCGACTGACTGGAAGCGCCGCGCGATTTTTCAC--------------------------------------------GAATCGCAATTGG-CGCACACTTCCT--GGTCGACGGGA-----------CACGGCTT--CCCCGAGATTGACCCA-CGACCCGC------GTCTCTTCTGCGCACTCCAAACGGCCCGACGCTCCGCCTACT-------------------------------------------GGGCGTCGACGTGT------TGGGCCGGT----GTGGAAGGGGTGCTGGGG-------CG--------TGGGGATCCGTTATTCTATATCCTGGCCT------AGGTCGTCGACCGATGAGG-TTGTGGAGAAACCAACGGCATGACATTTTTT------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS TreTag/1-377 DE CAJHEQ010000310.1:c7009-6633 MAG: Tremellales sp. Tagirdzhanova-0007 genome assembly, contig: TREM_310, whole genome shotgun sequence
TreTag/1-377                                -------------------TACCCATGGGCCCGGCTCA--GCATCTCCTC-----------------GAGAGAAGCTGCAGCTTTCGACCGATCGGAAGCGTTCCCTCTCTCCCTCTCC---------------------------------------GGAAAGAGGTCGATGGACGTATAACTCCCCAAGTCGACGGGA-----------CACGGCTT--CCCCTAGATCAAACCCCTTTTCTTAATCACTCGCTCACCTCCTCCCATCCCCCTCGCCGCTCGACTCACCCTTCGCTCTTCCCTCTCTGCTTCC-GGGTGGGAGTCGAATTGTGTCGGGTGGGGATGGAGAGGGTCTTGGTTGATGGAGGTGGAGTGACGG-------------------AGGGGGGTCTTCTGTTATTTCATATCCTTGCCTAGT----GGTGATGAGCCTCTGAGGTTTTGGGAGAAACCAACCGAGCGACATTCCAT------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS TriOvo/1-271 DE WEIQ01000021.1:c304533-304263 Trichosporon ovoides strain 2NF903A scaffold21-size709057, whole genome shotgun sequence
TriOvo/1-271                                ----------------TTCTAACTACGGGCCCGGTTGC-TGTTCTCTCTGT-----GCGTATATCGCCAGAGCGGCGGCAACTTTCGACTGATTGGAAGCG-----------------------------------------------CTAGAGGGCTTTATTGCTCTCGCTGAGCGCATGATTCC---GGTCGACGGGA-----------CACGGCTT--CCCCAAGATAAAGTCTCT--------------------------------------------------------------------------------GGTGGATCTCCGTCCTTTGGACGTTGACGAACCGC------------------------------------------------TGGGGACCTACCGTTATTCTGTATCCTGGCCT------AGGTCGTTGACCTATGAGG-TTGTGGAGAAACCAACGGTCTGACATCTCAA------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS TriAsa/1-270 DE SCGW01000004.1:111390-111659 MAG: Trichosporon asahii isolate N5_275_008G1 N5_275_008G1_scaffold_21, whole genome shotgun sequence
TriAsa/1-270                                -----------------TCTTACCAAGGGCCCGGTTGC-TGTTCTGTGTGC-----GCGTATATCGCCTCATTGGCGGCAACATTCGACTGATTGGAAGCGCTAGA-----------------------------------------------GGGCTTCACGGCCCTCGCTGAGCGCATGATTCC---GGTCGACGGGA-----------CACGGCTT--CCCCGAGATAAAGTCCTT--------------------------------------------------------------------------------GGTGGATCTCCGTCCTCTGGACGTCGACGAACCAC------------------------------------------------TGGGGACCTACCGTTATTCTGTATCCTGGCCT------AGGTCGTTGACCCATGAGG-TTGTGGAGAAACCAACGGTCTGACATTTCCA------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS TriCor/1-270 DE JXYL01000014.1:297200-297469 Trichosporon coremiiforme strain JCM 2938 scaffold_0014, whole genome shotgun sequence
TriCor/1-270                                -----------------TCTTACCAAGGGCCCGGTTGC-TGTTCTCTGTGC-----GCGTATATCGCCTCATTGGCGGCAACATTCGACTGATTGGAAGCGCTAGA-----------------------------------------------GGGCTTCACCGCCCTCTCTGAGCGCATGATTCC---GGTCGACGGGA-----------CACGGCTT--CCCCGAGATAAAGTCCTT--------------------------------------------------------------------------------GGTGGATCTCCGTCCTCTGGACGTCGACGAACCAC------------------------------------------------TGGGGACCTACCGTTATTCTGTATCCTGGCCT------AGGTCGTTGACCCATGAGG-TTGTGGAGAAACCAACGGTCTGACATTCCCA------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS TriInk/1-270 DE QAEE01007448.1:c609-340 Trichosporon inkin strain ATCC 18020 NODE_7551_length_869_cov_5.72475_ID_91814, whole genome shotgun sequence
TriInk/1-270                                -------------------TAACCAAGGGCCCGGTTGC-TGTCCCCTCTGT-----GCGTATATCGCCAGAGCGGCGGCAACGTTCGACTGATTGGAAGCGCTAGA-----------------------------------------------GAGCCTTGCTGCTCTCGCTGAGCGCATGATTCC---GGTCGACGGGA-----------CACGGCTT--CCCCGAGATAAAGTCTTT--------------------------------------------------------------------------------GGCGGATCTCCGTCCTCTGGACGTCGACGAACCGC------------------------------------------------TGGGGACCTACCGTTATTCTGTATCCTGGCCT------AGGTCGTTGACCCATGAGG-TTGTGGAGAAACCAACGGTCTGACAAACCCCAC----------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS ApiBra/1-303 DE JAMALJ010000001.1:c1294550-1294248 Apiotrichum brassicae strain M2204 ctg_1, whole genome shotgun sequence
ApiBra/1-303                                -----TTGTTGTTGTTGTTTCTCCAAGGGCCCGGCCAACCACCACTTTTGT--------------------GGTGCGCGGCATCTCGACAGCAGCGAAGCGTCCTCTCC--------------------------------------------------------GTGGGCGTACAG-----TTCC---AGTCGACGGGA-----------CACGGCTT--CCCCGAGAATGACCGGCGGTGGCGGTGTGCATTGGCTGTTTGA-CCCAGACGCTCCGCATTAACCTT---------------------------------------------------GCGTCGACGTGTC----------------TGGTAGGTCTTTGTGTGTTGCTATCGT-----------CGGCCTCCGTTATTCTATATCCTGGCCT------AGGTCGTTGACCCATGAGG-TTGTGGAGAAACCAACGGCGTGACATTTGTA------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS CutDas/1-317 DE BEDX01000005.1:c1054324-1054008 Cutaneotrichosporon daszewskae DNA, scaffold: scaffold_5, strain: JCM_11166, whole genome shotgun sequence
CutDas/1-317                                ------------CTCTTCTCTCTCTAGGGCCCGGTCCCA---------------------GCGTCCCTCCCCGACGCTGGGCATTCGACAGACCGGCCGCTCGAGCACTA---------------------------------------------------------GCGCTGACAGC----GGCC---TGTCGACGGGA-----------CACGGCTT--CCCCCAGATCGACCGTGTGCGCAGGAAGCAAGGCGCCGCCCGAGCCAAGACGCTCCGCTCCTCCCCC---------------------------------------------GGGCTGGCGGGGTCGAGGCGC-GTCGACGTGTCGCGGCGAGGCGCC-TTGTGGACTGCGCGTG----------CGGGTCCCGTTATTCTATATCCTGGCCT------AGGACGTCGTCCTGTGAGG-TTGTGGAGAAACCAACGGAATGACATTTCTT------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS CutOle/1-338 DE QKWL01000002.1:2284540-2284877 Cutaneotrichosporon oleaginosum strain ATCC 20508 ATCC20508_contig02, whole genome shotgun sequence
CutOle/1-338                                ----GTTGTGCAATCTTGCTCTCCACGGGCCCGGTCCCG-----------------------CGCTGCATCGCGGCGCGGGCATTCGACAGATTGGACGCGCAAGCGCA----------------------------------------------------GCGATGCGGATGCGCGC----GTCC---TGTCGACGGGA-----------CACGGCTT--CCCCCAGACTGACCGCA-GCGCCGGC-GTCCG---CTATT--ACCCAAGACGCTCCGCTTC--------------------------------------------------------GGCGTCGACGTGTCGC-----------GGAGGCG-GGCGCCGCCGTGCG-------------------CGGCTTCCGTTATTCTATGTCCTGGCCT------AGGTCGTCGACCTGTGAGG-TTGTGGAAAAACCAACGGAATGACACTTGTGATGTGCGAGAGTTGTAGATGATGGATCAAATTTGCTGTGCGAGCCGC-------------------------------------------------------------------------------------------------------------
#=GS BulAlb/1-351 DE CAMYTR010000009.1:c563682-563332 Bullera alba genome assembly, contig: jcf7180000012101, whole genome shotgun sequence
BulAlb/1-351                                CCATCTCTCCTTCTTCTTCTTACCATGGGTCCGAGCTGTC-----GTCGAACCACCCTTCGGGGTCGGTTTTGCGGCAGCACTATCGACTGATTGGAAACGCCGCGACTC-------------------------------GGAGATTCAAAACCCCCTTGTTAATTTGGATTGGCGTACATTTCC---TGTCGACGGAACGAACTAT---TACGGCTCA-TCCCAAGATCGATCTCCCAC--CGATCGAA-------CCTCTACTGCTTTTCCCCCGCCCT--------------------------------------------------------GGGGTCGAGAAGCGGTAACCTAT-----------AGGATCT-CGGTGGTGT-----------------AGGCATCCGTTATTTCATATCCTTGCTTAA----AGGCGATTCGCCATTGAAGATTTGGGAGAAACCAACGGAATGACATTCATCC-----------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS VanFra/1-340 DE BEDY01000004.1:501584-501923 Vanrija fragicola DNA, scaffold: scaffold_4, strain: JCM 1530, whole genome shotgun sequence
VanFra/1-340                                ------------TTCTTCTTCTTCATGGGCCCGGTCCAG-----------------------CACGGTCATTCGTGCTGGGCTTTCGACTTAACGGAAGCGCAAAGCCC---------------------------------------------------GAACACGGCTCATGGCGTATACTTCC---TGTCGACGGGAG----------TACGGCTT--CCCCTAGAGTGACCGTCTTTCGTTTAGCCTTGTCTGCTGCTTGAAGCCCGACGCTCCGCGCGCAGCTCTCGCCCTC-------------------GAGGGGGGGCTTGAGGGCTGCGGCCTGCGTTGATGTGTCGGGGTA---GGCGGGCGAGGC---------------------GGCGAGGGGTGGGTTCCGTTATTCTATATCCTGGCCT------AGGTCGTTGACCTGTGAGG-TTGTGGAGAAACCAACGGCAAGACATTTTTT------------------------------------------------------------------------------------------------------------------------------------------------------------
//

• Image source 3.6:

# STOCKHOLM 1.0
#=GF RW van Nues, September 2023
#=GF https://coalispr.codeberg.page/paper
Annot/1-29                         -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGrGT------------------------------------------------------------------------------------------------------------------------------------------CTGA----------------YAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGrGT-----------------------------------------------------------CTGA----------------YAGYAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS CNAG_12250-spliced/1-658 DE 3: [581,535 - 581,969] (+434), 3: [582,023 - 582,106] (+83) 3: [582,161 - 582,300] (+139) ### 3: [582,023 - 582,106] (+83), 3: [582,164 - 582,301] (+137)
CNAG_12250-spliced/1-658           ------------------------------------------------------------------------------------------------------------------------------------------ACTCTACTTTTACGTCC-ATATTTTACCGACTTTTCTTCCCGCCACTTCGTCGTCCATCACCTTCGATACCCTCCCCCCGTCCTACTACCCTCCTGTCGCCGAAAACCTTCAGTCGGCGCGGCACGTCTTCTCTTATCACTGC------------AATTGCTTCACTCTCAAGGACATACGTGACCAATGGCACCCCTTCTCTTGACCCACTTTCGACCTCGTCAGCGTTCTCTCCTTTCTACCCTTTTTACTGCCACTTTTTTGGGTGCCGTCATCGTCGTCGCTTTCCCATGTCCGGCGCGTGCTTCTGGTGAAACTCGATTAGAATCTCCCGGTCCTACGACTGTTCGAGCATCAGAGGGTAGAAGA------------------------------GAGGTTGTACTTTTGATGAATGAGCGA---GGGAAAAGGCGTTTCATGGAGGAGAGATGATTGAAGGATGTGATGACTCG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTTCCATAAAACGCCAATCAACTGGCTTCTTGCGTTT------TCGGCGGTTGTAACAC----CATTCTGAAG----------------------------------------------------------------CTAGGTTGTATACGTATTT------------------------------------------------------------------------------------------------------------------------------------------------gtagTTACATGACATCTCAA-AATT---------ATATTGCCCCCCACACCTATCGATCAAAAAGCATCAGACG--------TAATCCGGGTTTCCTCATTTGAAAATTCGCCCTGAGGCCTTCTTAGTCACGAAATGCATTCCATTCG---ACAAATATTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS CNAG_12250-predicted/1-802 DE 3: [581,512 - 582,314] (+802)
CNAG_12250-predicted/1-802         -------------------------------------------------------------------------------------------------------------------TCCAATCCCTTTTCGCTCAATTTACTCTACTTTTACGTCC-ATATTTTACCGACTTTTCTTCCCGCCACTTCGTCGTCCATCACCTTCGATACCCTCCCCCCGTCCTACTACCCTCCTGTCGCCGAAAACCTTCAGTCGGCGCGGCACGTCTTCTCTTATCACTGC------------AATTGCTTCACTCTCAAGGACATACGTGACCAATGGCACCCCTTCTCTTGACCCACTTTCGACCTCGTCAGCGTTCTCTCCTTTCTACCCTTTTTACTGCCACTTTTTTGGGTGCCGTCATCGTCGTCGCTTTCCCATGTCCGGCGCGTGCTTCTGGTGAAACTCGATTAGAATCTCCCGGTCCTACGACTGTTCGAGCATCAGAGGGTAGAAGA------------------------------GAGGTTGTACTTTTGATGAATGAGCGA---GGGAAAAGGCGTTTCATGGAGGAGAGATGATTGAAGGATGTGATGACTCG-----GTTCGTGTGCGTTTCGCTGCTTCGC---------------------------------------------------------------------------------------------------------AAAGACC--ATAGATTAACT-TCAAT----CGA-CAG----CTTTCCATAAAACGCCAATCAACTGGCTTCTTGCGTTT------TCGGCGGTTGTAACAC----CATTCTGAAG----------------------------------------------------------------CTAGGTTGTATACGTATTT---------------------------------------------------------GTAGGTTGGTCATTACAGCTTG-CTATTAATGACGACCATTACTAA-------------------CAGATTC-------------CAGTAGTTACATGACATCTCAAAATT----------ATATTGCCCCCCACACCTATCGATCAAAAAGCATCAGACG--------TAATCCGGGTTTCCTCATTTGAAAATTCGCCCTGAGGCCTTCTTAGTCACGAAATGCATTCCATTCG---ACAAATATTTCTTACCAGCTTCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS pre-HACAcnag12250/1-1138 DE AE017343.1:c1451249-1450484 Cryptococcus neoformans var. neoformans JEC21 chromosome 3 sequence
pre-HACAcnag12250/1-1138           ------------------------------------------------------------------------------------------------------------------------------------------ACTCTACTTTTAAGTCC-ATATTTTACCTATTTCCCTTCCCATCGCCTCGTCATCCATCGCCTCCGATACCTATCCCTCGTCCCACTACCCTTCTGTCACCAAAAACCTTCAGTCGGTCCGGCACGTCTTCTCTCATCGCTGG------------AATTACTTCATTCTCAAGGACATACGTGAACAATGGCACCCCTTCTCTTGACCCACTTTCGACCTCGCCAACGTTCTCTCCTTTCTACCCTTTTTACTGCCACTTTTTTGGGTGCTGTCATCGTCGTCGCCTTCCCATGTCCAGCGCGTGCTTCTGGTGAAGCTCGATTAGAATCTCCCGGTCCTACGACTGTTCGAGCATCAGAGGGTAGAAGA------------------------------GAGGTTGTACTTTTGATGAATGAGCGA---GGGAAAAGGCGTTTCATGGAGGAGAGATGATTGAAGTATGCGATGACTCG-----GTTCGTCTGCGTTCTGCTGCTTCGC---------------------------------------------------------------------------------------------------------AAAGACC--ATAGACTGACT-TCAAT----CGA-CAG----CTTTCCATAAAACGCCAATCAACTGGTCTCTTGCGTTT------TCGACGGTTGTAACAC----CATTCTGACG----------------------------------------------------------------TTAAGTTGTATACGTATTC---------------------------------------------------------GTAGGTTGATTATCACAGCTTTTCAATCAATGACGACCATCACTAA-------------------CAGATCC-------------CAGTAGTTACATGACATTTTAAAAATT---------ATATTCCCCCCCACACCCCTCGAT-GAGAATCATCAGACG--------TATTCCGGGCTTCCTCATTTGAAAATTCACCCTGTGGCCTTCTCAGTCACGAAATGCATTCCACTCG---ACAAATATTGCCTCCTAGCTTCCGATTTCTTCGGCGATTGATCCTCGAATTCAATAAGCACCA---CTACTTAGCAGCCTTCTTTTGGCTTTGTTCCTTCTTTTTTGCCGCACGTTGACCGTAAGGCTTACTCGCATCCTAGTTGCGCATCACAGACAGGGTCATCAGGCTCAGCTTTGCGAACCTGCTCTATGAGAAACTCACGTCGTCGATAACAATCAGACTGACGGGATCTTGCTCCTCTCCTGCAAAATAACGCCTGATGATATCTTTGGCAACTTCAGCATATCGGCTCTGTGCGTCGAGAGTTACGTCCGAGTCTGCCGCTCTAGTTAGCTTTCGCAAAATCATATATCGTTTAGGTGGTGATGTACAGTAGAGAAC
HACAcnag12250/1-1029               ------------------------------------------------------------------------------------------------------------------------------------------ACTCTACTTTTAAGTCC-ATATTTTACCTATTTCCCTTCCCATCGCCTCGTCATCCATCGCCTCCGATACCTATCCCTCGTCCCACTACCCTTCTGTCACCAAAAACCTTCAGTCGGTCCGGCACGTCTTCTCTCATCGCTGG------------AATTACTTCATTCTCAAGGACATACGTGAACAATGGCACCCCTTCTCTTGACCCACTTTCGACCTCGCCAACGTTCTCTCCTTTCTACCCTTTTTACTGCCACTTTTTTGGGTGCTGTCATCGTCGTCGCCTTCCCATGTCCAGCGCGTGCTTCTGGTGAAGCTCGATTAGAATCTCCCGGTCCTACGACTGTTCGAGCATCAGAGGGTAGAAGA------------------------------GAGGTTGTACTTTTGATGAATGAGCGA---GGGAAAAGGCGTTTCATGGAGGAGAGATGATTGAAGTATGCGATGACTCG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTTCCATAAAACGCCAATCAACTGGTCTCTTGCGTTT------TCGACGGTTGTAACAC----CATTCTGACG----------------------------------------------------------------TTAAGTTGTATACGTATTC------------------------------------------------------------------------------------------------------------------------------------------------gtagTTACATGACATTTTAAAAATT---------ATATTCCCCCCCACACCCCTCGAT-GAGAATCATCAGACG--------TATTCCGGGCTTCCTCATTTGAAAATTCACCCTGTGGCCTTCTCAGTCACGAAATGCATTCCACTCG---ACAAATATT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS WM276/1-767 DE CP000288.1:c1405040-1404274 Cryptococcus gattii WM276 chromosome C, complete sequence
WM276/1-767                        ------------------------------------------------------------------------------------------------------------------------------------------ACTCTACTTTTGAGTCCCATATTTTACCCATCTCTCTTCCCACAAGCCTTTTTTCCATCACTTTCGATACCCATCCCTCATCTCATTGCCCTCCTGTCGCCGAAAACCTTCAATCAGCTCGGCGCGTCTTCCCTCATCACTGC------------AAATTCTTTACTCTCGAGGGCACACGTGAACAATGGCACCCCTTCTCTTGACCCACTTTCGACCTCGCCAACGTTCTCTCCTTTCTACTCTTTTTACTGCCACCTTTCTGGGTGCTGTCATTGTCGTAGCCTTCCCATGTCCAGCTCGTGCATCTGGTGAAACCCAATTAGAATCTCCGGGTCCTAGAACTGTTCAAGCATCAGAGGGTAGAAGA------------------------------GAGGTTGTCCTTTTGATGAATGAGCGA---GGGAAAAGGCGTTTCATGGAAGAGAGATGATCAAAACATGGAATGACTCG-----GTTCGTGTGCGATTCTGCTGCTTCGA--------------------------------------------------------------------------------------------------------AAAGATC--ATGAACTGACT-TCAAA----TGA-TAG----CTTTCCATAAAACGCCAATCAACTGGC---TTGCGTT-------TCGGCGGTTGTAACAC----CATTCTGAGG----------------------------------------------------------------TTCGGTTGTATAGGTATTT---------------------------------------------------------GTAGGTTGACTATTACAACATTACTATCAACTGCGGCCATTATTAA-------------------CAGGATT-------------TAGCAGTTACATGACATTTCAA-AATT---------ATATTGCGCCCCAAACCCATCGATCGAGAATCATCAGACG--------TTTTCCGGGCTTCCGCATTTGAAAAATCGCCCTGTGACCTTCTTGGTCACGAAATGCATAT--TCTGCTTTCCAGTTTCCG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS R265/1-766 DE CP025759.1:c1643209-1642444 Cryptococcus gattii VGII R265 chromosome 1, complete sequence
R265/1-766                         ------------------------------------------------------------------------------------------------------------------------------------------ACTCTACTTTTAAGCCCCATATTTTACCTATCTCTCTTCCCACAAGCCTTTTTTCCATCACTTTCGATACCCACCCCTCATCTCATTGCCCTCCTGTCGCCGAAAACCTTCAATCAGCTCGGCGCGTCTCCCCTTATCACTGC------------AAATTCTTTACTCTCGAGGGCACACGTGAACAATGGCACCCCTTCTCTTGACCCACTTTCGACCTCGCCAACGTTCTCTCCTTTCTACTCTTTTTACTGCCACTTTCCTGGGTGCTGTCATCATCGTAGCCTTCCCATGTCCAGCTCGTGCTTCTGGTGAAACCCAATTAGAATCTCCGGGTCCTAGAACTGTTCAAGCATCAGAGAGTAGAAGA------------------------------GAGGTTGTCCTTTTGATGAATGAGCGA---GGGAAAAAGCGTTTCATGGAAGAGAGATGATCAAAACATGGAATGACTCG-----GTTCGTGTGTGATTGTGCTGCTTCAC--------------------------------------------------------------------------------------------------------GAAGATC--ATGAACTGATT-TCAA-----TGA-TAG----CTTTCCATAAAACGCCAATCAACTGGC---TTGCGT-T------TCGGCGGTTGTAACAC----CATTTTGAGG----------------------------------------------------------------TTCGGTTGTATAGGTATTT---------------------------------------------------------GTGGGTTGACTATTACAACATTACTATTAACTACGACTAGTATTAA-------------------CAGGATT-------------TAGCAGTTACATGACATTTCAA-AATT---------ATATTGCGCCCCAAACCCATCGATCGAGGATCATCAGACG--------TATTCCGGGCTTCCGCACTTGAAAAATCGCCCTGTGACCCTCTCAGTCACGAAATGCATAT--TCTGCTTTCTAGTTTCCG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS CryFlo/1-939 DE RRZH01000002.1:c2117893-2116955 Cryptococcus floricola strain DSM 27421 chromosome 2, whole genome shotgun sequence
CryFlo/1-939                       GACGGGATCAAATGTGCACGGCGGGTTTGAACGGAACGGGAGCAAAAT--GCGCGAGCCAATGGTGGTGCAGCCGTTCAAC---TGCCAGAGCCATTCTCCAATCCTCTTCCACCCTTTTCTCGCCCAACAA-AAAAACACAACGCCACTCTTCGCCCTCCTGTCCCATACCCCCTGCACGCTCTAATCTGCCGCTGCCACCCCCGGAATCCCCCAACTCGTCCGGTCCCGAGCATACAACAAACACCCGCAAAAACCTACGCACTTGTCTCTATCTTT---------------AATACAACACCCCAACCCACAATAATCACAAATGGCTCCCCTCCTCCTCACACATTTCCGGCCTCGCCAACGGTCTATCCTCTCCACCCTCTTCACCGCCACTTTCCTCGGCGCCGTCATCGTCGTGGCATTCCCATGTCCTGCGCGCGC---GGGCGAAACGAGATTAGACGGCCCTGGCGCTGGCACAGCGGGG--ATCGGAGAAGCAAAGAGA----------------------------GAGGTCGTGTTGATGATGAACCAAAGA---GGGAAAAGGAGGTTCTTGGAAGAGAGATAGTTGGTTAGATGGGGACATAGT----GTGAGTATGGGGGTTTTTTTTT------------------------------------------------------------------------------------------------------------CCAGAGGGGACGCGCTGATGGGTTT----GGGTCTAG----TTTTTGACACTTTTCGATGGGAAGTCGCGACAAAGAGGGCCACGTCGGCGATTGTAACAAGTATTCTTTTCACG----------------------------------------------------------------ACACGTTGTATA-----TT---------------------------------------------------------GTGAGTACATCTAAACGCCACAGCTCTGGTTCTGTAT----------------------------CTGATAAGAGACTTG--------CAGTATAATGACTTCT-CCGATCC---------TTCTCTACCACCATACATCTAGAGTTTCTCG-ATCATCTGTTTCCACCTATCCCGGGCTTTTTCATTGTCATCA-CATTTCGCGGCATATCATGACCCAAAATGCA-----TCTGCATTCGAAATTTTAGGGCACTGTCTATTCACAAATCCATTCATTCGACTCT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS CryWin/1-937 DE AWGH01000002.1:c1019464-1018528 Cryptococcus wingfieldii CBS 7118 supercont1.2, whole genome shotgun sequence
CryWin/1-937                       ----GGATCAAATGGCCACGGCAAGGTTGAACGGAACGGGAGCAAAATTCGCGCGAGCCAATCGTGGTGCAGCCGTTCAACTACTGCCAGTTCCATTCTCCAATCCTCTTCCACCCTTTTCTCGCCCAACAACAAAAACACAACGCCACTCTTCGCGCTCCTGTCCTATACCCCCTGA-CTCTCTAATTTGCCGTTGCCACCCCCGGAATTCCCCAACTCGTCCGGTTCCGAGCATACAACAAACACCCGCAAAAAC-TACGCATTTGTCTCTATCTTT---------------AATACAACACCCCAACCCACAATAATCACAAATGGCTCCCCTCCTCCTCACACATTTCCGGCCTCGTCAACGGTCTATCCTCTCCACCCTCTTCACCGCCACTTTCCTCGGCGCCGTCATCGTCGTGGCATTCCCATGTCCTGCGCGCGC---GGGCGAAACGAGATTAGACGGCCCTGGCGCTGGCACAGCGGGG--ATCGGAGAAGCAAAGAGA----------------------------GAGGTCGTGTTGATGATGAACCAACGA---GGGAAAAGGAGGTTCTTGGAAGAGAGGTAGTTGGTGTGATGGGGTAATAGT----GTGAGTATGGG----TCTTTTC------------------------------------------------------------------------------------------------------------TCAGAGGGGACGCGCTGATGGGTTT----GGGTCTAG----TTTTTGACACTTGTCGATGGAAAGTCGCGAAAAAGAGGCCCACGTCGGCGATTGTAACAAGTATTCTTTTCACG----------------------------------------------------------------ACACGTTGTATT-----TC---------------------------------------------------------GTGAGTACTTCTAAACTCCACAGCTCTGGTTCTGTAT----------------------------CTGATAAGAGACTTG--------CAGTATAATGACCTCT-CCGATCC---------TTCTCCACCACCATACATCTAGAGTTTCTCG-ATCATCTGTTTCCACCTATCCCGGGCTTTTTCATTGTCATCA-CATTTCGCGGCATATCATGACCCAAAATGCA-----TCTGCATTCAAAATTTCAGGGCGCTGTCTGTTCACAAATTTATCCATTCGACTCTTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS CryAmy/1-939 DE MEKH01000001.1:c1991260-1990322 Cryptococcus amylolentus CBS 6273 supercont2.1, whole genome shotgun sequence
CryAmy/1-939                       ----GGATCAAATGGCCACGGCAAGGTTGAACGGAACGGGAGCAAAATTCGCGCGAGCCAATCGTGGTGCAGCCGTTCAAC---TGCCAGAGCCATTCTCCAATCCTCGTCCACCCTTTTCTCGCCCAACAA-AAAAACACAACGCCACTCTTCGCGCTCCTGTCCCATACCCCCTGCACTTCCTAATTTGCCGCTGCCACCCCCGGAATCCCCCAACTCGTCCGGTTCCGAGCATACAACAAACACCCGCTAAATC-TACGCACTTGTCTCTATCTATCTTT------------AATACAACACCCAACCCACAATAATCACAAATGGCCCCCCTCCTCCTCACACATTTCCGGCCTCGTCAACGGTCTATCCTCTCCACCCTCTTCACCGCCACTTTCCTCGGCGCCGTCATTGTCGTGGCGTTCCCATGTCCTGCGCGCGC---GGGCGAAACGAGATTAGACGGCCCTGGCGCTGGCACAGCGGGG--ATCGGAGAAGCAAAGAGA----------------------------GAGGTCGTGTTGATGATGAACCAAAGA---GGAAAAAGGAGGTTCTTGGAAGAGAGATAGTCGGTTTGATGGGGCAATAGT----GTGAGTATGGG---TCTTTTCC------------------------------------------------------------------------------------------------------------TCAGAGGGGACGCGCTGATGGGTTT----GGGTCTAG----TTTTTGACACTTGTCGATGGAAAGTCGCGAAACAGAGGCCCACGTCGGCGATTGTAACAAGTATTCTTTTCACG----------------------------------------------------------------ACACGTTGTATT-----TC---------------------------------------------------------GTGAGTACATCTAAGCTACACAGCTCTGGCTCTGTAT----------------------------CTGATAAGGGACTTG--------CAGTATAATGACCTCT-CCGATCC---------TTCTCTACCACCATACATCTAGAGTTTCTCG-ATCATCTGTTTCCACCTATCCCGGGCTTTCTCATTGTCAACA-CATTTCGCGGCAAATCATGACCCAAAATGCA-----TCTGCATTCGAAATTTCAGAGCGCTGCCTATTCAAAAATCCATCCATTCGACTCTTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS KwoSha/1-1044 DE NQVO01000013.1:c280514-279471 Kwoniella shandongensis strain CBS 12478 scaffold00013, whole genome shotgun sequence
KwoSha/1-1044                      -------------------GGCCACTTTCTCATCCAACTTAGCACTGAAAACAATCCATCTCTGCTACGCTCCAATCCCATTTAGCGCTATTACCATCTTCCCATTCTGCACCTTTGATTTCACTCCACAAAA-----CGCATCGTCTATTGCGACACGACATAATCGTATCGTTGACGTGACGAAACCCGAGTCTCGATCAAAAAGTTGCTTCCAGGCAGATTACAAAAGATTCCAATTCCTGCGCGGATACTACTTTCAACGGCAAACATATTCACCTTAATCGATCAAGCTTCCCCTCACGAACACTGCATCTCACAACAAAATGGCACCACTCCTTCTTACCCACTTCAGACCGCGTCAACGGTCCATCCTCTCCACCCTGTTCACAGCTACATTCCTCGGCGCCGTCATCGTCGTCGCTTTCCCCTGTCCGGCAAAATCGTCCCACGAAGCAAGATTAGACTCACCAACATATCAAACGGCGTCAGACTCAAATAGGAGGGAAAGG---------------------------GAGGTGGTAGTGTTGATGAATGAGAGA---GGGAAAAGAAGATTTTTGGAAGAGAGATGA-------GACAGAAAGGAC------GTGAGTGCGCCTTTTGATCTATGTTTGGCTACGGAGAGAATGGTCGTAGGACGGGATATGTGCGGAGAAACTTCTGGGACGTATTGCGCAGAATGTGACTGTTAAGCGTAGGAGGTGTCGTTAGTACGGATGGCGAGACTGGCACTGATACCCATATCT---CATAG----------------TCGAATCGACGATCGCAAACTAGAAGAACG---CGG-AGTTGTATCA----GCATAT-CAA-----------------------------------------------------------------ACACGTTGTACCC---------------------------------------------------------------GTGAGTCTGGCCACATCATCA----CTGGCTCACTAC-------------------------CGATTGACACGTCCCTCTTGTTTAATTAGCATATACCAAGCATCCGCA------------TTTCCACCC-----------GAGC------TATACG----------CTCTCACGG----CATCTCGCTGCCCAGTAAACTACATATAGCCATACACAGGGATGCA-------TTCAT-CATACAGGAACATTACACTTCTTTCGATCGGCTTTACGTCTTCTCACCTTGTCACTTTGCCGGCTGCTTCGTCCAGGAAGAACCGCTGCGAGTGTCTAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS NaeEnc/1-786 DE MCFC01000008.1:165600-166385 Naematelia encephala strain 68-887.2 BCR39scaffold_8, whole genome shotgun sequence
NaeEnc/1-786                       -------------------------------------------------------------TTGACGCTTCGGGCAGTGTAGATGATGTTCAGGAGAAGGTCTGGGCTGCTGTAACATCGACCTTGAATGCAGACTTCCCAAGCATGGGTAGATTATGGATGTAACAGTGCTGTCAGACATACTAAGCAGCCTGGCCCTTTGCTCTCCCACGGTCACTGGCTTGGGCATTGCGTCCTGGGATAAATACGAGAAAAAGAATCGATTTTAATGCACGAGCGCGGTTAAGTCGTCTTTCTGCTTGTCTTTTCTCCTTCTCCAACCACCATGGCGCCTTTGTTGCGCAGGTACTTTGCTCCGAGGCAGCGATCACTACTCTCAACCCTATTCACAGCTACCTTCTTGGGCGCCGTCATCGTAGTCGCATTTCCTTGTCCTGCT-----------CGACCTTCCGATCGTTCTGCGATGCGTCTGGATGGCGAGCAGATGAACTCACGAGGAGCCAGGCAG----------------------GATGTTGTTGTCATGATGAATGAGAGA---GGAAAGCGGCGGTTCATTGAGGAACGCTAGGCC-----------AACTTG-----GTGAGTAC---------------------------------------------------------------------------------------------------------------------------------------CTGGAGTCTCTT---------CAG----CGACATGCTAACGAGGCCAGACATTT--GAGAAT----GCTGTTTCGGCTACTTGT-----------TTTC--------------------------------------------------------------------CTGGTTGTTTGACCCTTAGTACGTTCAGCTATACAGTTCTCAGCTAAA---------------------------------------------------------------------------------------------------------------------------------------------------------TACC-------TCCTAGAGTCTGTGAAGT--TCTGTATCAACACTATTCA------CTCTCGCAA-----CATTTACCCCGCACTTCGATACCATACTGCA-------TGCATTGCTACAATAGCGACTCAAATCATTCTCACGGCCCAGCTCCCTTCTGACCCGTCGCCTTCGTTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS VanFra/1-713 DE BEDY01000001.1:1277069-1277781 Vanrija fragicola DNA, scaffold: scaffold_1, strain: JCM 1530, whole genome shotgun sequence
VanFra/1-713                       -----------------------------------------------------------------------------------------------------------------------------AAATATCCTTGGGACCAATCGGCTGCCACAACTTTGAGAGGGCTCAGGAGCTCGTCACTGACAGACGACGTACTGCTCACTGCCATTACACACGCCGTCACTCTCACCACTACTCCTCACCACTCTCCCCTCATCCCCGCCCCCAAACCACCCACGCGCACTTCCCCCAACCCCTCGGCGCGACTCTCTACCCCAAAACCATGGCGCCCCTTCTCCTCACCCACTTTCGCGCCCGCCATCGCTCTGTCCTCACCACTCTCTTCACCGCAACCTTCCTCGGCGCCGTCGCCGTCGTTGCCTTCCCCTGCCCCGC---CGATAGCCGCCGCGCGCTCCTGTCCAGCCCCGAGAACGGAGAGGCGTC---ATCCAAGGCCACGCAAAAG---------------------------GAGGTTGTCGTCATGATGAACCAGCGCGCCGGCCGCAGGAGGTTTATGGAGGAGTTGTAGAGGGCAGACACGG------------GTGAGTATTGGGCAGACTGCTGCCTCTTCAGAACTCCCTGGTT-------------------------------------------------------------------------------------------------AATAATGAA---------------CAGCCGCCCTTGCCTCCATTTGGAAAACCAAAAGCGATACTCGCCATTGCCCCTCTCGTTGTA-CACTATTATTATCAAACACA------------------------------------------------------------CATTGCATGA-------------------------------------------------------------------GTGAGTTATGT--------CGACGACGATCTGTGCAAACCCCT----------------------CTAACAGCA--------------CAG---AACGACCACGGTTTGGTGT-CATACCCATTCCGCACACACAACCACATAACTAACCATTTATCATATTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS CryGC7/1-713 DE JALPBX010000021.1:65889-66601 Cryptococcus sp. GC_Crypt_7 iso00_79_21, whole genome shotgun sequence
CryGC7/1-713                       -----------------------------------------------------------------------------------------------------------------------------ACACCACACTACACGAACACATATATCACTATAGCTCTAGCTCTGCTTGGTTCGCTTGACACACACACAACACACTCGCGCGGCTCATCTTCAACTATTTATCGCATTTTATCAATCATACGAAACATCCCAGCGTCCTCTGTAAACAGCGAGCTTAGCCGGTCTTTCAACTACTTCGCTGTGATCGCCCACACTTCGCCATGGCACCATTACTCTTAACGCATTTCCGACCACGGCAGAGATCGCTCTTATCAACACTATTCACCGCAACTTTCTTAGGCGCTGTGATAGTCGTCGCTTTTCCTTGTCCAGCTAGATCGAGCGGAACACAACTCCAATCCGAGTCTCCATCTACTTCTATTTCGGCAAGTAATGGTAGAGATTCGCGTAGC---------------------GAGGTGGTTCTTATGATGAACCAAAGA---GGTAAAAGAAGATTCATGGAGGAACGTTAG-------------------------GTGTGTCATCGTCTCTTCTATCACCAATATTCTGTGGCGAATAATTGATCACGTCTACTGGTCACCCAATCAG--------------------------------------------------------------------------------------------------CCTCATATCTCTATCCCCTCTCATCAAC----------------------ATTGTAGCAACATTA------------------------------------------------------------------------CATCGGTTGTACCCA--------------------------------------------------------------GTGAGCTCTCTCAAATCGTTCGCCCATCGCTCATCA-----------------------------CTGACTCTCCG----------ATCAGTATATTAAGCATCAACGCATCAGCATCACCAACGACATTACGCCTCGC-ATTCGCATATATCATCATCTCGGGCCTTTTTTC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS PapLau/1-747 DE JAAZPX010000021.1:160009-160755 Papiliotrema laurentii strain IF7SW-F4 scaffold36_cov196, whole genome shotgun sequence
PapLau/1-747                       -------------------------------------------------------------------------------------------GGTAGCGTTGAAGAGGTTGGCCGACTGATATGGTCGGCCATACAACGTAAGACGCACACGGAGCGACCCGACGGAATCGGTCGATTGTGGGAGAAAGTAGATAAATAAACCAAAAACAAATTATATAATCGCTATTATCTCTTTCCTGCGCTGTGCCAATCGCCTCGTCGCTCTTTCTCAACCTCGAGCTCATCTCTACGGCCTAGCCTGCTGTTCCAACAGCCCTTCTTCCCCATGGCACCCTTATTACGAACCTATTTCGCGCCCAAGCAGCGTTCACTCTTGTCGACGCTTTTCACTGCCACCTTCCTTGGAGCCGTCGTTGTTGTCGCTTTCCCGTGCCCGGCTAGGCCCGGTGACCGCGCAAAGCCGACTGCCCGCC------------------TTGACAGTCCTTCTTTATCGGCCGAT---------------------CAGGTTGTGGTCGTGATGAAC-AGCAG--GGGCAAGCACAGATTCATGGAGGAGAGATGATCAG---------------------GTGGGTTTCATCGTCT--------------------------------------------------------------------------------------------------------------CTGATAGCGAAAAGTCGCCTGACGATTACA--------CAG------------------------------------------------------------------------------------------------------------------------------------------------ATGTTGATTAAAACTATGTCATTCGCGCCAGTATCTGTTCCTCATCCAACCAGGTAGGGCTTTCCC--------GTACGTGTCGCCTTT----------------------------------------GACACGGACGCTAATATGA-------------TCAGCCTCATTGTATACCCAGCACC------------------------------------------------------GTATCACCCGGC--AATCATTTAATTTGTATCTCCTAGGGTAGTCGCGTATCCCGTGTAAATCATTGGTCGGCATCGCCACGGTCTCCGACATTTTTGTACAAGAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS ApiBra/1-716 DE JAMALJ010000027.1:c71923-71208 Apiotrichum brassicae strain M2204 ctg_27, whole genome shotgun sequence
ApiBra/1-716                       -----------------------------------------------------------------------------------------------------------------------------CGTTACCGGAATGCGGTTTGCCCTCGGCAGCCAATAATCTTGCCGCCTATGCCAACGACCCGCCAAAGCTCAAGATTCCTCGAAGAATGGAGAGCAAGACTAGCGTGCAGCAGTTTAATGCCTCGAGCGATCCGGCGAGCTCGTTCGCTGATCATTACAATCAACAACAAAAGCCTCGACTACTTACAACATCAACCTCGATGGCACCCCTCCTCCTCACGCACTTTCGCGCGCGCCAGCGCTCGGTGCTCACCACCCTCTTTGCCGCCACGTTCCTCGGCGCGGTGGTCGTTGTCGCCTTCCCGTGCCCCGCCCGCGTCGAGGGTGCGCGCCTCGAGACGCCCAACCA---------------GGCAGACAGCAAAGCTGCCCAGAGC------------------------GAAGTTATCGTCATGATGAACCAGCGC---GGGCGGAGGCGGTTCATGGAGGAGTAGGAGTAGACGAGGAGAGAAAGATTGAAGCGTGAGTGTTGTGGCTCCATCCTATGTG------------------------------------------------------------------------------------------------------------------CCTATGAGTTCTAA---------CAGACCAGACACCACTCGCTTGCTCGCATGCTCGCATGCTCGTTTCGTCTCACTTGCCTCTTGACCTAAACGCATCAAAAACCGCATTTCGCTCGTCCACAAGTTCCA------------------------------------TTATAGTTGTATTAAACCAGCATTCACATG-----------------------------------------------GTGAGTTGGCGACTTCAAGATTG--------------------------------------CAAACTGACAG---------------ACAGA----GGGCATACCCCGCATC-----------------TTCCACACATTCATTACAATATGCAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS CryVH5/1-950 DE JANBXI010000009.1:c115719-114770 Cryptococcus sp. VH57_BW 9, whole genome shotgun sequence
CryVH5/1-950                       -----ATCCACGCAGTCTTGAAGCATCCACGGCAGGTCCCAGCCCAAT-CGCTCTTC----GTTCAAAAACACTTTCTTCACCCACATACAAACACTCGCCCCGTCTCTCCCCCCAACACACCCTCTCCCGCTCCCTCCCCGCCCGCCCCTCCTCTACCTCCCCGTACAAAATTCATCTCCCACACACCCGCCGTCTTGGTCTTCAGCCCGCCA---GTAAAACACATCGGCACGCCTCACATCCCCCGCCCGCACTCCTCGCACCCCACTACCCCCCCCCCCCCC------------ACACACACCCTCCACCTAGCCCGCACGATGGCTCCCCTCCTCGCCTCGCACTTCCGACCCCGCCAGCGCTCCATCCTCTCCACCCTCTTCACCGCCACCTTCCTCGGCGCGTTCGTTGTCGTCGCTTTCCCCTGTCCGGCAAGGAGCGGCGGGGGTGGGGCGCGGTTAGACGGGCCGCCGGCTGCAGAGGGCGTCCGGGACGGGCGGGGAAGG---------------------------GAGGTGGTGTTGTTGATGAATGAGAGG---GGGAAGCGGAGGTTCATGGAGGAGAGGTGATGGAGGGGAATG-CAGAGAG-----GTGAGCTTCCG-TTGGCTGTGACGGGTACAGGGGACAAG-------------------------------------------------------------------------------------------CGAGGGGGCGGATGCTGACGAGGCGCGCACGGTACAG-----------------TGGCATGT-GCTGGAAGGGGAAAACC------------TTGTGGAG-------------------------------------------------------------------------------AACAGTTGTAACACTACCCTATAGATGACTGCATTGTATAT-----------------------------------GTGAGTGTGGGGCCATCAGCTCCTGGTCTCTCGGTCACTCAAGTCTCGGGGGGAGCGATACAGGGCTGACGAGGGCGTCA--------CAGTACTTAACGAACAACCCCAT------------TCCGGCTCTCCTTGCACTGGTGGCATTCCCAACTCATCCA---------TCGC--------ATGATCCGGTTCGGC-----TCTTCAA----CGCCAGCGGGCCACCCG----TCCGAAGACATATGAAATGCATCTTCGTTGCTCAACCCGTCTTTTCCTGTACA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS TriCor/1-1018 DE JXYL01000005.1:492420-493337 Trichosporon coremiiforme strain JCM 2938 scaffold_0005, whole genome shotgun sequence
TriCor/1-1018                      -----------------------CCCAGGCCACTTCGAACTTTCAGCGTCCAATCCGGAATGCCAGGTTTCGTCGCCCAGCGCTGCAGGCCGTGCGTGCCCAGGCGACGACAAGCTTCACTCGCTACCGGTCGCTGTCAACCTCACCACCACTCAGTGCCAAAAGGTCCACACGTCGATCAGTGTGTGTGGGCTCATCCAGACTCTCCCGTTCTCCTCCTCAGTCGTCCGTTGACGACCCCGACTCGACCACTCCACCGTCTTTCGGAGTGATCGCCAAAACTTCAACCCTCCGCCCCTAATCACCCGAGCCAGATCGCAAGTCAATGGCACCCCTCCTCTTCTCGCACTTCCGCGCGCGCCACCGTTCAGTCCTGACCGGCCTGTTTGGCGCGACGTTCCTCGCCGCCGTCGCTGTTGTCGCTATGCCGTGTCCTGCGCGCGAGAAGCGAACTCTTCTCGATGAGCCGAGCCCTGCCCC-CGCTCCGGCTGGCAAACAG--------------------------------------GAGGTCATCGTCATGATGAACCAGCGG---GGACGGAGGCGGTTCATGGAGGAGTAAGCTGCAGGACACAGCAGGCTCCCGCAA--------------------------------------------------------------------------------------------------------------------------------------------GGGGGCTGAGGATGGC---------CAGGACATTCTAGTCTCCTCGCCGACACTGCTCCCAAGACCGAGTTTGAAGGACCGACACGCGGTCAATAACTAAGAAGGGCCCCCTCAACTGGAGCCGAGCCCGACACGAACCGATGCGATGTCCCAGTCAAGATTTCCATCAATTAAGTTGTATAATAAA-----------------------------------------------------------GTGAGTCCTCCCAGTTTCCGGT------------------------------CTGAAAGGCTGAGCTGACGGCCCTGGCCACATCA--TAGCATTAGATTTCCGGTTCGATG--CATT----GTTCATTGCATAATCTTCACGAGT----TGCAGACCGTCTGCAGGGGGAGGAAGGCAGGTGGCGGAATAGGGGGCATAAAGAAGCACACGGCAGACGCACACGTAAACATAGAAGGTACTGACTGATACTGACACTCGTTATGTTGGCATTGGTCATGAGGGAGAGGTCAGCGTTGCCTGCGGCAACCAGCATGCGTACATGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS TreMes/1-713 DE SDIL01000033.1:109121-109833 Tremella mesenterica strain ATCC 28783 supercont1.33, whole genome shotgun sequence
TreMes/1-713                       -----------------------------------------------------------------------------------------------------------------------------GTACTTTAATTCAACCTCCCACTTTACGTCCTGTCAATTCCTCACCCAACCATTCGTCCGTTCAAATCCATCCTTCTCAAACGTATTCTCGCTCGATACCATCCGCCATTGCATTTTTTCAATCGATCAAAACTACATACATAACCTACGAGAAACTTCGACCTTGCAATCTGAACAGAACCAAAGAGCCCCCGAGATACATGGCACCGCTTCTTCGTACTCTCTTTCGACCTCGTCAACGATCCCTACTCTCTTCACTTTTCACAGCTACTTTCCTCGGAGCGGTGGTGGTCGTCATGTTCCCTTGTCCCGCCAGGGAACGTTCTCTGGGTACGAGGCTGGAACATGA----------------GCGACATCAAGATGGCAAA-----------------------------GAGGTGGTGGTCATGATGAATGAACGG------CGGCGGAGGTTTATCGAGGAAAGATAGA---TAGGCCACGAGGTCGATC---GTGAGTTCTCACTCACGACCTTCCTTTTCCTTCGTCTGTGATATCAGTAGGACACTTGTCATTCCTCTCAATACTTCTTTCCCCT-------------------------------CCGATAGTAGCTGTGTTAGCCGTAGTTGCTGATGAT------------CAG------------------AGTATGAGA------------------TCATCGAATGTTGTAA----------------------------------------------------GAAAATGTACCAATCGTCGAATTAGCCATCTGAATTGCAA-----------------------------------------------------------------GTCAGTCGCTCTTCAATTGAAATATACGATTACTGGA----------------------------CTGATCAA---------------CAGTGCATCATACTCTATACTTGAACAATATATACATT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS KwoHev/1-316 DE ASQC01000054.1:173863-174178 Kwoniella heveanensis CBS 569 cont2.54, whole genome shotgun sequence
KwoHev/1-316                       -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGATCATTAATTCCGGAAATCCGTTTCCAACTGGCAGCTTCTTTCTCACGTACACGTACCACCAAATCTCGACCAAACACCCAATAACACAAATCG-------CGCCACAATGGCTCCCTTACTCTTAACGCATTTCCGACCGCGTCAACGATCGCTCCTCTCGACGCTGTTCACAGCTACTTTCCTCGGAGCCATCATCGTAGTGGCTTTCCCCTGTCCTGCCCAGTCTGCCGGTCAGGCCAAACTTGATTCAGCATCGGGAATGATGAGTAGTCTCGCTAGAAGTGGGAATGTGACAGGGAGTCAGCAGAAGGATAGGCGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS KwoHev/1-273 DE ASQC01000054.1:174061-174333 Kwoniella heveanensis CBS 569 cont2.54, whole genome shotgun sequence
KwoHev/1-273                       ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCTTTCCCCTGTCCTGCCCAGTCTGCCGGTCAGGCCAAACTTGATTCAGCATCGGGAATGATGAGTAGTCTCGCTAGAAGTGGGAATGTGACAGGGAGTCAGCAGAAGGATAGGCGGGAGGTGGTGCTGCTTATGAATGAGAGA---GGGAAGAGGCGGTTCATGGAGGAGAGATAACCGAGTGGATACGAGGGGGAATAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTGGGCAAGGGAAGAGAGAATGAATTAAGCCGCGACGAGGTGGGATCGAAGGGTTGTACACTATCATATCACA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
//

• Image source 4.1:

# STOCKHOLM 1.0
#=GF RW van Nues, September 2023
#=GF https://coalispr.codeberg.page/paper
#=GS pre-HACAcnag12434/1-479 DE 4:1360979-1361457:1
pre-HACAcnag12434/1-479         ATTTCTATCTCTTCTCTTCTTCTTTTGTTTTTCTATCCAGTTTTCATTCAGCAGCCAAAGTATAAGCAAGCGCCTTCGTTGCAACACATCCCACCCATAGGAGATGCAAAATTTCTTTATCCCTTGACTTTCTTTCCAGACCTCACTATCTTTTCTTCACCATACCCCACACCCATACGCAT-TTGCCTAGCCGCTCTC-ATCTCCT----------CACGAGAGCGTGCTTACTAGCCGTAATGGAATATCAACGCTTTAGGTCTAGACAACCTGTGTTCACTTTCCGTCTTCT---------------------------------------TCTATTTCGAAAGTCTTGGAAGGAGGCATCAGGAAGGTGA----------------------------------------------GCCGGCGCTTCGCCGTTCCACCCTTGATA------------------------------AACCAGA-CTATGTGGAGTATC-GAGGACTAAACTGCGCTGACACATCTCTCTGTATATTCTCAAGTTTTTTACGTAGATTTCAGTCCGTATGATGTGCGCGATGGATGTGATCTATCATTTTACCGTC
#=GS HACAcnag12434/1-229 DE AE017344.1:1361149-1361377 Cryptococcus neoformans var. neoformans JEC21 chromosome 4 sequence
HACAcnag12434/1-229             --------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCCATACGCAT-TTGCCTAGCCGCTCTC-ATCTCCT----------CACGAGAGCGTGCTTACTAGCCGTAATGGAATATCAACGCTTTAGGTCTAGACAACCTGTGTTCACTTTCCGTCTTCT---------------------------------------TCTATTTCGAAAGTCTTGGAAGGAGGCATCAGGAAGGTGA----------------------------------------------GCCGGCGCTTCGCCGTTCCACCCTTGATA------------------------------AACCAGA-CTATGTGGAGTATC-GAGGACTAAACTGCGCTGACACATCT--------------------------------------------------------------------------------
#=GS from-CNAG_12434/1-228 DE CP003824.1:c435997-435770 Cryptococcus neoformans var. grubii H99 chromosome 5, complete sequence
from-CNAG_12434/1-228           --------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCCATACGCAT-TTGCCTAGCCGCTCTC-ACCTCCC----------CACGAGAGCGTGCTTACTAGCCGTAATGGAATATCAACGCTTTAGGTCTAGACAACCTGTGTTCACTTTCCGTTTCCT---------------------------------------TCTATTTCGAAAGTCTTGGAAGGAGGCATCAGGAAGGTGA----------------------------------------------GCCGGCGCTTCGCCGTTCCACCCTTGATA------------------------------AACCAGA-CTATGTGGAGTATC-GAGGACTAAACTGCGCTGACACATC---------------------------------------------------------------------------------
#=GS WM276/1-229 DE CP000294.1:c420144-419838 Cryptococcus gattii WM276 chromosome I, complete sequence
WM276/1-229                     --------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACCATACGCAT-TTGCCTAGCCGCTCTC-GCCTTCT----------CACGAGAGCGTGCTTACTAGCCGTAATGGAATATCAACGCTTTAGGTCTAGACAACCTGTGTTCACTTTCTGTCTTCT---------------------------------------TCTATTTCGAAAGTCTTGGAAGAAGGCGTCAGGAAGGTGA----------------------------------------------GCCGGCGCTTCGCCGTTCCACCCTTGATA------------------------------AACCAGA-CTATGTGGAGTATC-GAGGACTAAACTGCGCTGACACATCT--------------------------------------------------------------------------------
#=GS R265/1-229 DE CP025767.1:c407885-407578 Cryptococcus gattii VGII R265 chromosome 9, complete sequence
R265/1-229                      --------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCCATACGCAT-TTGCCTAGCCGCTCTC-GCCTTCT----------CACGAGAGCGTGCTTACTAGCCGTAATGGAATATCAACGCTTTAGGTCTAGACAACCTGCGTTCACTTTCTGTCTTCT---------------------------------------TCTATTTCGAAAGTCTTGGAAGAAGGCATCAGGAGGGTGA----------------------------------------------GCCGGCGCTTCGCCGTTCCACCCTTGATA------------------------------AACCAGA-CTGTGTGGATTATC-GAGGACTAAACTGCGCTGACACATCT--------------------------------------------------------------------------------
#=GS CryWin/1-217 DE CP034269.1:c890233-889984 Cryptococcus wingfieldii strain CBS7118 chromosome 9, complete sequence
CryWin/1-217                    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCCATACGCAT-TTGCCTAGGTCCTCTCCATCCTTCGGGATTATACCACGAGAGCGATCTTACTAGCCGTAATGGAACATCAAGGGATTAGGTCTAGACAACCTGTGTCTTCTTTCAGTCCTTT--------------------------------------------------------------CGGGGACTGGAAGCTGA-----------------------------------------------CTGCCCTTTCGAAA-TCCACCCTTGTCGC------------------------------ACCAGTTTACTGTGGAGTGTCTGAGGACTAAATTTCGCTGGCATTCAT--------------------------------------------------------------------------------
#=GS CryAmy/1-217 DE MEKH01000009.1:379862-380181 Cryptococcus amylolentus CBS 6273 supercont2.9, whole genome shotgun sequence
CryAmy/1-217                    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCCATACGCAT-TTGCCTAGGTCCTCTCCATCCTTCGGGATCATACCACGAGAGCGATCTTACTAGCCGTAATGGAACATCAAGGGATTAGGTCTAGACAACCTGTGTCTTCTTTCAGTCCTTT--------------------------------------------------------------CGGGGACTGGAAGCTGA-----------------------------------------------CTGCCCTTTCGAAA-TCCACCCTTGTCGC------------------------------ACCAGTTTACTGTGGAGTGTCTGAGGACTAAATTTCGCTGGCATTCAT--------------------------------------------------------------------------------
#=GS CryFlo/1-217 DE RRZH01000012.1:376356-376675 Cryptococcus floricola strain DSM 27421 chromosome 11, whole genome shotgun sequence
CryFlo/1-217                    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCCATACGCAT-TTGCCTAGGTCCTCTCCATCCTTCGGGATTATACCACGAGAGCGATCTTACTAGCCGTAATGGAACATCAAGGGATTAGGTCTAGACAACCTGTGTCTTCTTTCAGTCCTTT--------------------------------------------------------------CGGGGACTGGAAGCTGA-----------------------------------------------CTGCCCTTTCGAAA-TCCACCCTTGTCGC------------------------------ACCAGTTTACTGTGGAGTGTCTGAGGACTAAATTTCGCTGGCATTCAT--------------------------------------------------------------------------------
#=GS CryVH5/1-249 DE JANBXI010000037.1:25051-25299 Cryptococcus sp. VH57_BW 37, whole genome shotgun sequence
CryVH5/1-249                    -------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCCCATACGCAT-TTGCCTAGTTACTCTCC-CCATCC----------CACGAGAGCGA-CTTACTAGCCGTAATGGAACATAAACGGCTTAGGTCTAGACAACCTGTGTTCTTTCTCCAGTCCCT-------------------------------------------CTCCTCGCTAACCTTCGGGGGCAGGGAGACGGCTGACGGGGATTGA------------------------------------GCCGGCGTTGCACCGTTCCACCCTTGATAC------------------------------ACCAGAACTGTGTGGAGTATC-GAGGACTAAACAGTGCTGATATTCCTTTTATATGCGATT-------------------------------------------------------------------
#=GS KwoSha/1-318 DE NQVO01000010.1:64047-64364 Kwoniella shandongensis strain CBS 12478 scaffold00010, whole genome shotgun sequence
KwoSha/1-318                    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCCATACGCATATTGCCTAGCTACTCTCCTCTATTC----------TACGAGAGATAGCTTACTAGTCGTAATGGAACATCAACGCTTTAGGTCTAGACAACCTGTGTTTTTCCCTCTTTGTATCTCTTTCCTTTCAGAAACACTCTTCATCCTATCTCTAAACTTTCTTTTTCTTCCGTAAAACGAAGGAGAAGAAGGGGGAGTTGGGTCTTTTTGGGAGGGGAAGATACTATTAAACGGGGGGAAAAGCCGGCGTTTCGCCGTTCCACCCTTGATA-----------CTTTTTT-------------AACAAA---TCGTGGAGTATC-GAGGACTAAACTGCGCTGACAATC----------------------------------------------------------------------------------
#=GS KwoHev/1-305 DE ASQB01000005.1:1189563-1189867 Kwoniella heveanensis BCC8398 cont1.5, whole genome shotgun sequence
KwoHev/1-305                    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCCATGCGCAT-TTGCCTAGTTATTCTCCCACA----AAACAAT--CACGAGAATCAACTTACTAGCCGCAATGGAAAATCAACGGCTTAGGTCTAGACAACCTGTGGTCATCTTCGCGTTCGC-------------GCAAAGTCGATTCTAC-GTCC-GAAATTTTTTTCCCTT-GTAAAAGGGAGAAAGGATGGAGGACGAGATGAAGAT---GAAGA--------------------------TGGCACGGCGGGACGTCGTTCCACCCTTGATACGCTAGCTTTATATCCCCCTCCTTAGCGGGAGCGGGGGCTACGTGGTGTATC-GAGGACTAAATGGCGTCAACACTTCT--------------------------------------------------------------------------------
#=GS KwoDej/1-268 DE ASCJ01000012.1:c228463-228196 Kwoniella dejecticola CBS 10117 cont1.12, whole genome shotgun sequence
KwoDej/1-268                    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCCAAGCGCAT-TTGCCTAGTTCCCCTCTCTTT-------GA----CAAGAGT-CGAACTTACTAGCCGTCTTGGAACATAAACGGCTTAGGTCTAGACAACCTGTGTTCTTCGTTGTGTTCTG-------------------------------------------TTTC---------------------AGAAACGACGAAGA-------------------------------------------AACGGCGTTGCGTCGTTCCACCCTTGATATTTTA-----TTCTCCCCG---------AGAGAAGTTTACAGATGATTTATC-GAGGACTAAATGACGCTGATATCCTACTATCACATTCACTCTTTTCTCACCTTATGTATGTATACATGTCC-----------------------------------
#=GS KwoBes/2-311 DE ASCK01000013.1:c1817710-1817401 Kwoniella bestiolae CBS 10118 cont1.13, whole genome shotgun sequence
KwoBes/2-311                    -------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACCCAAGCGCAT-TTGCCTAGTTCCTCTCCACCTCTTCGGAGACCACACAGGAGTTGAACTTACTAGTCGATTTGGAAAATCAACGGCTTAGGTCTAGACAACCTGTGTTGATTCATCCCCATTC---------------------------------------------TCCTT------GCAAAAGGGTGTGGTGGGGTGGATCA-------------------------------------------AACGGCGTTGCATCGTTCCACCCTTGATATGTCAG-----TTTTCTCTTC--------GGAGGAAAGGAAGATGATATATC-GAGGACTAAATGATGCTGATATCTCTTATATCATTAAAAAATTGTATGTATGTATCATGAGCGAACAATGTATATGATGTCTTACC--------------------
#=GS KwoMan/5-220 DE ASQE01000011.1:1535190-1535405 Kwoniella mangroviensis CBS 8507 cont2.11, whole genome shotgun sequence
KwoMan/5-220                    -------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTTCCTCTCTACCTCTCT-TCGCCGTAAGGCTTAAA--------GAAGATC--ATACGAGTTGAACTTACTAGTCGATTTGGAATAAAAACGCTTTAGGTCTAGACAACCTGTGTTTCAA----TTCATT--------------------------------------------------------ACTCACGCAAGTGAAAGTGATTGA----------------------------------------------GCCGGCGTTGCGTCGTTCCACCCTTGATATG---------TTAATTT--------------------AGAGATGATATATC-GAGGACTAAACTACGCTGATACTC----------------------------------------------------------------------------------
#=GS VanFra/1-230 DE BEDY01000005.1:c796168-795823 Vanrija fragicola DNA, scaffold: scaffold_5, strain: JCM 1530, whole genome shotgun sequence
VanFra/1-230                    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCCAGGCGCAT-TTGCCTAGAGCCTACCTACATC------------CCCCGGGAGGCCCTTACTAGCCGCACTGGAAGAAGAACGCTTTAGGTCTAGACAACCTGTGTCGGTG-----------------------------------------------------------------------------TCTTGCGTAGTGAGGCTTGCCTCGTTTGCGTGTTGCCC--------------------GGCCGGCGAAACGTCG-TCCACCCTTGTCCG----------CCCCT------GGCGAGCTTGCTCGC-CTCTTTGGGTGGTCCGAGGACTATACGTCGCTGATACTTCT--------------------------------------------------------------------------------
#=GS TriGue/2-208 DE BCJX01000005.1:523964-524260 Trichosporon guehoae DNA, scaffold: scaffold_4, strain: JCM 10690, whole genome shotgun sequence
TriGue/2-208                    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACCAGGCGCAT-TTGCCTAGAGCTCACCTACCTC------------CCCCGGGGTGCCCTTACTAGCCGCACTGGAAGAACAGCGCTTTAGGTCTAGACAACCTGTGTCAGCA-------------------------------------------------------------------------------TCCTCGGGTGCT--------------------------------------------GGCCGGCGCAGCGTCG-TCCACCCTCGA-----------CTCCTTTGCTGGGCCGCTTGCGGCCTGG--CCCATGGGCGGTC-GAGGACTATACGTCGCTTACATTTGT--------------------------------------------------------------------------------
#=GS ApiBra/1-251 DE JAMALJ010000026.1:c184990-184740 Apiotrichum brassicae strain M2204 ctg_26, whole genome shotgun sequence
ApiBra/1-251                    ---------------------------------------------------------------------------------------------------------------------------------------------------------------------CACATCCCCAGGCGCAT-TTGCCTAGAGGCCACCCAATTC------------CCAGGGGGGTCCCTTACTAGCCGCACTGGGAGAATAGCGCTTTAGGTCTAGACAACCTGTGTCGGTG-------------------------------------------------------------------TCCAAGTGCATTTATGCACGAGGATCCC----------------------------------------GGCCGGCGCGGCATCG-TCCACCCTTAC-------------------CT-GACCGC--GTT-CGCGC-AACCATGGGAAGATCGAGGACTATACGGTGCATACATTTCGCGATCTACCTTTTTTACTTTTTTACCACTATTA-----------------------------------------------
#=GS CutDas/1-273 DE BEDX01000001.1:3553162-3553434 Cutaneotrichosporon daszewskae DNA, scaffold: scaffold_1, strain: JCM_11166, whole genome shotgun sequence
CutDas/1-273                    ---------------------------------------------------------------------------------------------------------------------------------------------------------------CCCTACTAACACACCAGTCGC-T-TTGCCTAGAGCCCGCCCAGTC-------------CCCCGGCGGGCCCTTACTATGCGTCATGGAAGAGCAGCGGCTTAGGTCTAGACAACCTGTTCCCCG--------------------------------------------------------------------------------TGCGTGCTAGCGCGTGCGG-------------------------------------GGGCGGCGCAGCGGCG-TCCACCCTCGCAG-----------CCTTTACTT-------------------TTCGTGGGCGCGT-GAGGACTATACGTCGCGTACATTCGTACGCAGGTAGGTGCTTTGTATTATGAATGCACGAGTAGACCAGACATTTCAGCGACATGATTTTGTGC------------
#=GS CutOle/4-189 DE QKWL01000003.1:692516-692811 Cutaneotrichosporon oleaginosum strain ATCC 20508 ATCC20508_contig03, whole genome shotgun sequence
CutOle/4-189                    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACCACGCGCAT-TTGCCTAGAGCCCACCTCGTT--------------CACGGGGGGCCCTTACTAGTCGC-CTGGAAGATCAACGGCTTAGGTCTAGACAACCTGTGTCGCG----------------------------------------------------------------------------------TCTGCTTGCAGGCGC---------------------------------------GGCCGGCGGATCCTCG-TCCACCCTCGTCTG----------CCCTCGTTC-----------------------TGGGCATAT-GAGGACTAAACGAGGCGAACATCTCT--------------------------------------------------------------------------------
#=GS CrySki/1-288 DE BCHT01000016.1:438187-438476 Cryptococcus skinneri DNA, scaffold: scaffold_15, strain: JCM 9039, whole genome shotgun sequence
CrySki/1-288                    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCCAATCGCA-ATTGCCTAGACCCCCTTCATTCCC-----------AGAAGTGGGGC-CTTACTAGCCGAATTGGAATATCAAACGCTTAGGTC-AGACAACC-GTGGTTCTC---------------TCTTTCCTTCACGACTTCCCCCTATACGGTCATTCAATCTTGTTGGCGAGAGAAATCTTGACGGAGATTGGATGATTTGGGGGTTTGTTGGTTGGGGAGAGGG-----------------GACCGGCACAGTCCAG-TCCACCCTCGATGG-------TTCCCTCTTTATT--------------GAGAATTTTGGATCATT-GAGGACTATACTGGATTGATATTTAT--------------------------------------------------------------------------------
#=GS CryGC5/1-269 DE JALPBZ010000051.1:55641-55909 Cryptococcus sp. GC_Crypt_5 iso00_58_51, whole genome shotgun sequence
CryGC5/1-269                    -------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTACCATGCGCAT-TTGCCTAGTGTCTCCCTATTATTC---------TCTACGGGAGTCACTTACTAGCCGCAATGGAATAGAAACGCTTTAGGTCTAGACAACCTGTGTTTCCG-----------------------------------GCGTCTTCCTCTTTCTTCACTCTCGAGTACGAAAGTATTCTTGAGTGCG-GGGGAGGAACGCAGGCGCCGGAA----------------------------GCCGGCGTTGCGCCG-TCCACCCTTGATA-----------CCTTTTTCT-------------------ATCGTGGGGCATC-GAGGACTAAATGGCGCTGATACTCTTCCATATCCCCGTATCC----------------------------------------------------------------
#=GS CryGC7/1-257 DE JALPBX010000040.1:c101853-101597 Cryptococcus sp. GC_Crypt_7 iso00_79_40, whole genome shotgun sequence
CryGC7/1-257                    -------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTACCATGCGCAT-TTGCCTAGTGTCTCCCTAGATTCT---------TCAACGGGAGTCACTTACTAGCCGCAATGGAATATAAACGCTTTAGGTCTAGACAACCTGTGTTTCCG----------------------------------TGCGTCTTCCTCTTTCTT-ACTCTCGGGTA-------------------GGAGAGAGGAACGCAGGCGCCGGAA----------------------------GCCGGCGTTGCGCCG-TCCACCCTTGATA-----------CCTTTTTAT-------------------ATCGTGGGGCATC-GAGGACTAAATGGCGCTGATACTTCATATATCCCATACAACATATATA----------------------------------------------------------
#=GS CryGC3/1-270 DE JALPCB010000105.1:c51563-51294 Cryptococcus sp. GC_Crypt_3 iso00_45_105, whole genome shotgun sequence
CryGC3/1-270                    -------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTACCATGCGCAT-TTGCCTAGTGTCTCCCTATTATCT---------TCTACGGGAGTCACTTACTAGCCGCAATGGAATAGAAACGCTTTAGGTCTAGACAACCTGTGTTTCCG-----------------------------------GCGCCTTCCTCTTCCTTCATTCTCGAGTACGAAAGTATTCTTGAGTGCGGGGGGAGGAACGCAGGCGCCGGAA----------------------------GCCGGCGTTGCGCCG-TCCACCCTTGATA-----------CCTTTTTAT-------------------ATCGTGGGGCATC-GAGGACTAAATGGCGCTGATACTCTTCCGCATATCGTTTTTG----------------------------------------------------------------
//

• Image source 4.2:

# STOCKHOLM 1.0
#=GF RW van Nues, September 2023
#=GF https://coalispr.codeberg.page/paper
#=GS HACAcnag07413-in-CND05640/1-273 DE 4:1522260:1522532:-1 AE017344.1:c1522533-1522261 Cryptococcus neoformans var. neoformans JEC21 chromosome 4 sequence
HACAcnag07413-in-CND05640/1-273         ------------------ACCCACACTCCAGTCAGGGCCATACGCTTA--------------------ATTCCTACGCGAATGGACCGTTACGAGAGTGGAAGACCGAGGCGTTTC-TCCCGCCTTAT-ACCCCGCCTCTTT------GCCCTCGTTCTGAGTGGTTTCTT---AGAGAGGA-TTCAAGCCAT---GCCCGTTTTGGGCA--TGGTGAGGGG-TCAGGGAGTTA-TGGTGGTTGACCTGATTGAGTTGGGGC-TTGGATGATTGTC-----------ATCTTTGGATCGC--AAATG--TTCAATCCGGGTCCCTTAGTTC-GGTGTCACACATTTC-----------------------------------------------------------------------------------------------------------------------------------------------
#=GS in-CNAG_07413/1-277 DE CP003824.1:282835-283111 Cryptococcus neoformans var. grubii H99 chromosome 5, complete sequence
in-CNAG_07413/1-277                     ------------------ACCCACACTCCAGTCAGGGCCATACGCTTATC---------------------CCTACGCGAATGGACCGTTACGAGAGTGGAAGACCGAAGCGTTTC-TCCCGCCTTAT-ACCCCGCCTCTAT------GCCCTCGTTCTGAGTGGTTTTTTT--GTGGAGGA-TTCAAGCCAT---GTCCGTTTTGGGCA--TGGTGAGGGG-TCAGGGAGTTA-TGGTGGTTGACCTGATTGAGTTGGGGC-TTGGATGTT-TGCT-----ATTTCTTTGGGATTGCG---AAACG--TTTAATCCGGGTCCCTTAGTTC-GGTGTCACACATTTC-----------------------------------------------------------------------------------------------------------------------------------------------
#=GS WM276/1-270 DE CP000294.1:270644-270913 Cryptococcus gattii WM276 chromosome I, complete sequence
WM276/1-270                             ------------------CCCCACACTCCAGTCAGGGCCATACGCTTATG---------------------CCTACGCGAATGGACCGTTACGAGAGTGGAAGACCGAGGCGTTTC-TCCCGCCTTGT-ACCCCGCCTCTT------ACCACTCGTTTTGAATTGGTTTTTTAAAAAGAGGA-TTCAAGCCGTC--ATCCGTTTTGGATA--TGGTGAGGGG-TCAGGGAGTTG-CGGTGGTTGACCTGATTGAGTTGGGGC-TTGGATGTTTTGC--------------TGCTTTGCAA--AAACG--TTTAATCCGGGTCTCTTAGTTC-GGCGTCACACAT--------------------------------------------------------------------------------------------------------------------------------------------------
#=GS R265/1-283 DE CP025767.1:258945-259227 Cryptococcus gattii VGII R265 chromosome 9, complete sequence
R265/1-283                              ------------------ACCCACACTCCAGTCAGGGCCATACGCTTATG---------------------CCTACGCGAATGGACCGTTACGAGAGTGGAAGACCGAGGCGTTTC-TCCCGCCTTAT-ACCCCGCCTCTT------ACCACTCGTTTTGAGTTTTT-------TAAGAGGA-TTCAAGCCATC--ATCCGTTTTGGATA--TGGTGAGGGG-TCAGGGAGTTA-CGGTGGTTGACCTGATTGAGTTGGGGCATTGGATGTTTTGCTTGCTAAATTTTTAGTGTTTGCAAAAAAACGTTTTTAATCCGGGTCTCTTAGTTC-GGTGTCACACATT-------------------------------------------------------------------------------------------------------------------------------------------------
#=GS KwoSha/1-269 DE NQVO01000010.1:256236-256504 Kwoniella shandongensis strain CBS 12478 scaffold00010, whole genome shotgun sequence
KwoSha/1-269                            ------------------TCCCACACTCCAGTCAAGGCCATACGCGCG---CTTCGGCG--------ATTACCTACGCATTTGGACTGTTACGAGAGTGGAAGAACGAG-CACTCC-TCCCGCCTTAT-ACCCCACCTCTT-------GTCCTCGTTTTGAGGTACG-------TTTGAGGCCTTCAAGCCAC---GTCCGTTTTGGACG-TCGGTGAGGGG-TCAGGGAGGAG-TGGTGGTTGACCTGATAGAGTTGGGCT-TTGGATGTGCC-----------------TTTGTGCAACA------TTATAATTCGAATCCCTTAGTTC-GGTGTCAGACATTT------------------------------------------------------------------------------------------------------------------------------------------------
#=GS CryFlo/1-320 DE RRZH01000009.1:1026278-1026597 Cryptococcus floricola strain DSM 27421 chromosome 8, whole genome shotgun sequence
CryFlo/1-320                            ------------------TACCACACTCCAGTCAGGGCCATAAGCAG---------------------ATTATCACGCATATGGACCGTTACGAGAGTGGAAGAACGAG-CGTCCT-TTCCGCTTTATGACCCCACCTCC-------AACCCTCGTTTTGAGGAA---------TCGGAGGCCTTCAAGCCATT--GTCCGTTTTGGACG--TGGTGAGGGGTCCAGGGGG-GA-CGGTGGTTGATCCTATTGAGTTGGGACTCTGGCCTGTTCTT---------------TTGAACTATCG-------CTCAGTTGGAGTCCCTTGGTTTTGG-ATCGGACAACTCTTCAAGTATAGTCGGCGTTCTTAGATGGTGCATTGCGACATGTATGTTCTATGATAGTC------------------------------------------------------------------------------------
#=GS CryWin/1-400 DE AWGH01000029.1:59396-59796 Cryptococcus wingfieldii CBS 7118 supercont1.29, whole genome shotgun sequence
CryWin/1-400                            ------------------TACCACACTCCAGTCAGGGCCATAAGCAG---------------------ATTATCACGCATATGGACCGTTACGAGAGTGGAAGAACGAG-CGTCCT-TTCCGCTTTATGACCCCACCTCC-------AACCCTCGTTTTGAGGAA---------TCGGAGGCCTTCAAGCCATT--GTTCGTTTTGGACG--TGGTGAGGGGTCCAGGGGG-GA-CGGTGGTTGATCCTATTGAGTTGGGACTCTGGCCTGTTCTT---------------ATGAACTATCG-------CTCAGTTGGAGTCCCTTGGTTTTGG-ATCAGACAACTCTTCAAGTATAAACGGCGTTCTTAGATGGTGCATTGCAATATGTATGTCCTAGGATAGTCTGTAAAACGCACAGTTCTCCACAATTCTATT-GGGAATCGC---TCGAGAAATACAATCAAATGGAAAAGTGGGACCGGCAGCC
#=GS CryAmy/1-397 DE MEKH01000008.1:977563-977963 Cryptococcus amylolentus CBS 6273 supercont2.8, whole genome shotgun sequence
CryAmy/1-397                            ------------------TACCACACTCCAGTCAGGGCCATAAGCAG---------------------ATTATCACGCATATGGACCGTTACGAGAGTGGAAGAACGAG-CGTCCT-TTCCGCTTTATGACCCCACCTCC-------AACCCTCGTTTTGAGGAA---------TCGGAGGCCTTCAAGCCATT--GTCCGTTTTGGACG--TGGTGAGGGGTCCAGGGGG-GA-CGGTGGTTGATCCTATTGAGTTGGGACTCTGGCCTGTTCTC---------------TCGAACTATCG-------CTCAGTTGGAGTCCCTTGGTTTTGG-ATCAGACAACTGTT-AAGTATAAACGGCGTTCTTAGATGGTGCATTGCGACATGTATGTCCTAGGATAGTTTGTAAAATGCACAGTTCTCCACAATTCTACATGAGAATCGCTCTGTCAAGAAATACAATCGAGTGGAAAAGTGGGACC------
#=GS CryGC3/1-267 DE JALPCB010000096.1:c3106-2840 Cryptococcus sp. GC_Crypt_3 iso00_45_96, whole genome shotgun sequence
CryGC3/1-267                            -----------------GTCCCACACTCCAGTCAGGGCTATACGTGCG---CTTCGGCA---------ATACACACACGTTTGGACCGTTACGAGAGTGGGAGAACGAGCGCCTT---CCCATCTTAC-ACCCCATTTTCC-------AGCCTCGTTTTGAGGCAA---------TGGAAAACTTCAAGCCAC---GTCCGTTTTGGACG-TTGGTGAGGGG-TCCGGGAAGG--CGGTGGTTGACCTGATTGAGTTGGGGTTTGAGTGTGCCTT-------------------GTGCAGCA-------TTTAACCCAGATCCCTTAGTTC-GGTGTCAGACATCTTTAA--------------------------------------------------------------------------------------------------------------------------------------------
#=GS CryGC5/1-265 DE JALPBZ010000036.1:c3109-2845 Cryptococcus sp. GC_Crypt_5 iso00_58_36, whole genome shotgun sequence
CryGC5/1-265                            ------------------TCCCACACTCCAGTCAGGGCTATACGTGCG---CTTCGGCA---------ATACACACACGTTTGGACCGTTACGAGAGTGGGAGAACGAGCGCCTT----CCCTCCTAT-ACCCCATTTTCC-------AGCCTCGTTTTGAGGCAA---------TGGAAAACTTCAAGTCAC---GTCCGTTTTGGACG-TTGATGAGGGG-TCCGGGAAGG--CGGTGGTTGACCTGATTGAGTTGGGGTCTGAGTGTGCCTT-------------------GTGCAGCA-------TTTAATCCAGATCTCTTAGTTC-GGTGTCAGACATTCTTAG--------------------------------------------------------------------------------------------------------------------------------------------
#=GS CryGC7/1-265 DE JALPBX010000020.1:232481-232745 Cryptococcus sp. GC_Crypt_7 iso00_79_20, whole genome shotgun sequence
CryGC7/1-265                            ------------------TCCCACACTCCAGTCAGGGCTTCACGTGCG---CTTCGGCA---------ATACATACACGTTTGGACCGTTACGAGAGTGGGAGAACGAGCGCCTT----CCCTCCTAT-ACCCCATTTTCC------GCGCCTCGTTTTGAGGCAA---------TGGAAAACTTCAAGCCAC---GTCCGTTCTGGACG-TTGGTGAGGGG-TCTGGGAAGG--CGGTGGTTGACCTGATTGAGTTGGGTTTTGGGTGTGCCTT-------------------GTGCAGCA-------TCTAATCCAGATCCCTTGGTTT-GGTGTCAGACATACTTG---------------------------------------------------------------------------------------------------------------------------------------------
#=GS CryVH5/1-267 DE JANBXI010000007.1:10406-10672 Cryptococcus sp. VH57_BW 7, whole genome shotgun sequence
CryVH5/1-267                            -----------------GCCCCACACTCCAGTCAAGGCCATAAGCGCG---CTTCGGCA----------CCTAAACGCAGATGGACTGTTACGAGAGTGGAAGAACGAGCGTCCTT--CCCGCTTTAT-ACCCCACCTCTT-------GCCCTCGTTTTGAGGGTC-------TCCAAGGGGCTTCAAGCTGC---GTCCGTCTTGGACG--TGGCGAGGGG-TCAGGGGGGA--CGGTGGTTGACCTGATTGAGTTGGGGTCCGGATGCGCCTT--------------------CGCGGTGAAA----TTTAATCTGGATCCCTTGGTTT-GGTGTCAGACATCTC-----------------------------------------------------------------------------------------------------------------------------------------------
#=GS KwoHev/1-282 DE ASQB01000098.1:c58973-58692 Kwoniella heveanensis BCC8398 cont1.97, whole genome shotgun sequence
KwoHev/1-282                            ------------------TCCCACACTCCAGTCAGGGCTAGACGCACG---CTTCGGCA----------AATATACGCATCTGGACCGTTACGAGAGTGGAAGAACGAG-CATTTT-CCCCGCCTTAT-ACCCCACCTCC-------GACCTTCGTTTTGAAGGTTCATC----TTGGAGGCCAAAAAACCGGTC-GTCCGTTTTGGGCA-CTGGTGAGGGG-TCAGGGGATTA-TGGTGGTTGACCCGATTGAGTTGGGAT-TTGGATGGACCG--------------ATTTCTCTGGTCGTTAATTATCTAATCCGGATCCCTTGGTTT-GTGGTCAGACATTTC-----------------------------------------------------------------------------------------------------------------------------------------------
#=GS KwoMan/1-281 DE ASQF01000011.1:90241-90521 Kwoniella mangroviensis CBS 8886 cont1.11, whole genome shotgun sequence
KwoMan/1-281                            ------------------TCCCACACTCCAGTCAGGGCCATTCGCACCG-TCTTCTCAG-------ACACCTAAACGCGATTGGACCGTTACGAGAGTGGGAGAACGAG-CGTCATGCCCCGACTTAT-ACCCCACCTCC-------GGCTCCCGTTTTGGGATGCTTCT----TGCGAGGCCAAAAAGTCGGTCTGTTCGTTCTGAACG-CCGATGAGGGG-TCAGGGGAAGA-CGATGGTTGACACGATTGAGTTGGGTT-TTGGA-TGTGTCT---------------CTTTTGGACTG-----CTTTCAATTCGGATCCCTTGGTT-GGTTGTCAGACATAC------------------------------------------------------------------------------------------------------------------------------------------------
#=GS KwoBes/1-293 DE ASCK01000013.1:c1704334-1704042 Kwoniella bestiolae CBS 10118 cont1.13, whole genome shotgun sequence
KwoBes/1-293                            -----------------GTCCCACACTCCAGTCAGGGCCATTCGCACTGTCTTTATAAAG-----ACAATTCTTACGCGATTGGACCGTTACGAGAGTGGGAGAACGAGCGTCAT-GCCCCGACTTAT-ACCCCACCTCC-------GGCTCCCGTTTTGGGATGCTTTT----TGCGAGGCCAAAAAGTCGGTTCGTTCGTTTTGAACG-CCGATGAGGGG-TCAGGGGAGGA-CGATGGTTGACACGATTGAGTTGGGGTTTGGATGTGTCTC----------------TTTTTGACTGTTTA----TCTAATCCGGATCCCTTGGTT-GGTTGTCAGACATTCTATCTT------------------------------------------------------------------------------------------------------------------------------------------
#=GS KwoDej/1-290 DE ASCJ01000012.1:35630-35919 Kwoniella dejecticola CBS 10117 cont1.12, whole genome shotgun sequence
KwoDej/1-290                            ------------------TCCCACACTCCAGTCAGGGCCATTCGCACTGTCTCGTCAATGACGAAACAACTCATACGCGATTGGACCGTTACGAGAGTGGAAGAACGAGCGTCAT-GCCCCGATCTAT-ACCCCACCTT-------GGGCACCCGTTTTGGGTCTGCTTATT--TACGAGGCCAAAAAGTCGGTT-GACCGTTTTGGACA-CCGATGAGGGG-TCAGGGGAAGA-CGATGGTTGACACGATTGAGTTGGGATCTGAATGTGTCTAC------------------TTGACTGC------TTTCAATTCAGATCCCTTGGTTT-GTTGTCAGACATTCTA----------------------------------------------------------------------------------------------------------------------------------------------
#=GS CrySki/1-309 DE BCHT01000016.1:294637-294945 Cryptococcus skinneri DNA, scaffold: scaffold_15, strain: JCM 9039, whole genome shotgun sequence
CrySki/1-309                            ------------------CCCCACACTCAAGTCAAGGCCATGCGCACCG--CTTCAAGCGAG-------ACCCTACGCGTTCGGACTGTTACGAGAGTGGAAGAACGAG-TCTTCC-TCCCGCCTTAT-GCCCCACCTC--------AACCTTCGTCTTGAAGGGTT------TACCGAGGCCAAAAAGCTGTGTCACCCGTTTTGGGTA-CCGGTGAGGAGCTCAGGGAGGAGG-AATGGTCGTACCGACAGAGTTGAGAC-TCGGACCGCTGT----------------------ACAGCG----TTTCTACTCTGGGTCTCTTAGTTTC-GGGACGGACACGTTTTCTTTTCATTGCTTGGGATATGGCTTCGTGATATG-----------------------------------------------------------------------------------------------------------
#=GS BulAlb/1-313 DE CAMYTR010000150.1:c139887-139575 Bullera alba genome assembly, contig: jcf7180000012251, whole genome shotgun sequence
BulAlb/1-313                            --------------CCCATTCCACACTCAAGTCAAGTTCGCTCGTG--------CGGCCTTTTGTGCCAGTCTCACACGTCCGACCTGTTACGAGAGTGGAAGAACAAGCATCT---CTCCGCCTTTT-ATCCCACCTCATCTAGTGATCTCACGTCTTGTGAGAT-----TGCGCCGAGGCCAAAAAGCTGGTTTATCCGTCTTGGGTAGCCGGTGAGGGATTACCAGGAGAGATGGTGGTAGATCCGATTGAGTTGGGATCAGGGTGGTCGATTT--------------GATTCGACAAA-------TCCAGCCCCGATCCCTTGGTT-GGTGATCTGACATCTTTTCCCACGCGGTCTTCACT----------------------------------------------------------------------------------------------------------------------------
#=GS TriOvo/1-270 DE WEIQ01000007.1:20051-20320 Trichosporon ovoides strain 2NF903A scaffold7-size1128033, whole genome shotgun sequence
TriOvo/1-270                            ------------------CACCACCCTCCAGTCAAGGCCATGAGCG-----CTTC-----------AATTACCTACGCACTTGGACTGTTACGAGAGTGGAAGAACAAG-CACCT--CTCCGCCAGT--GTCCCACCC-------ACGCTTTCCGTTTTGGTAAAG----------TTGGGCCAAAAAGTCGGT--GTCCGTTTTGGACA-TTGATGAGGGTCCCAGGAGAGG--CTGTAAGAGGAACTAATGAGTTGGGATCCGAAC-CGCCCTT------------------GGGCATG--------CCTCGCTCGGATCCCTTGGTTAT-GGGCCATACATTTCATTTCCCAGGCA-----------------------------------------------------------------------------------------------------------------------------------
#=GS NaeEnc/1-286 DE MCFC01000058.1:c18790-18505 Naematelia encephala strain 68-887.2 BCR39scaffold_58, whole genome shotgun sequence
NaeEnc/1-286                            AATTCCCCTTCATCCTCATTCCACACTCAAGTCAAGTCCA-GAGATG---CCTTC-----------------TCACAACCCTGGACTGTTACGAGAGTGGAAGAACGAGCGTATC--TCCCGCCTTTA-GCCCCACCTCT--------ACCCCCGTCTTGGGGGTTC--------TCGAGGCCAAAAAGCCGGTCTGCCCGTTTTGGGTGACTGGTGAGGGG-CATGGGAGAT---CGTATTCGGCCTAATTGAGTTGGGATCCGGGTGGTCTTT------------------TCTGACGCTCTAA----CGAATCCGGATCCCTTGGTTGC-TGGCCATACATTTTTTCTCG-----------------------------------------------------------------------------------------------------------------------------------------
#=GS NaeAur/1-283 DE JAKFAO010000011.1:512910-513192 Naematelia aurantialba strain NX-20 Contig11, whole genome shotgun sequence
NaeAur/1-283                            ---------------CCATTCCACACTCAAGTCAAGTCCA-GAGATG---CCTTCTCACGCGAGATG---CCTTACAACTCTGGACTGTTACGAGAGTGGAAGAACGAGCGCATC--TCCCGCCTTA--GCCCCACCTCT--------ACCCCCGTATTGGGAGTTC--------TCGAGGCCAAAAAGTTGGTCTGCCCGTTTTGGGTGTCCGGCGAGGGG-CATGGGAGAT---CGCAATCGACCTAATTGAGTTGGGACCCGGATGGTCCTC-------------------GTGACGGTCA-------TAATACGGGTCCCTTAGTTGC-AGGCCATACATTTATCTTTAGTT--------------------------------------------------------------------------------------------------------------------------------------
#=GS TriInk/1-283 DE QAEE01004256.1:c1357-1075 Trichosporon inkin strain ATCC 18020 NODE_4313_length_1626_cov_7.05746_ID_85342, whole genome shotgun sequence
TriInk/1-283                            ---------------CTGCACCACCCTCCAGTCAAGGCCATGAGCG-----CTTCAATC-----------ACCTACGCACTTGGACTGTTACGAGAGTGGAAGAACAAGCACCT---CTCCGCCA--GTGTCCCACCCAC-------GCTTTCCGTCTTGGTGAAG----------TTGGGCCAAAAAGTCGGT--GTCCGTTTTGGACA-TCGATGAGGGACCCAGGGGAGG--CTGTAAGAGGAACTAATGAGTTGGGATCCGGACCGCCACTTT------------------GGCATG--------CTTCGCTCGGATCCCTTGGTTAT-GGGCCACACATGTCATACCCCTAGCGGCTGTCATC--------------------------------------------------------------------------------------------------------------------------
#=GS CutDas/1-285 DE BEDX01000002.1:c1080684-1080400 Cutaneotrichosporon daszewskae DNA, scaffold: scaffold_2, strain: JCM_11166, whole genome shotgun sequence
CutDas/1-285                            -------------CCTTTCCCCACACTCCAGTCAAGGCCATTTGCGGG---------------------ATCCTACGCATTCGGACTGTTACGAGAGTGGAAGAACGAGCGTCTC---TCCGCCA--GAGCCCCACCCCC---------GTCCCGTCTTGGGTTC----------TGGGGGCCAAAAAGCCGGT--GCGCGTTTTGCACA-CTGGTGAGGGGCCAAGGGAGA---CGATGGA-GACCTCATTGAGTTGGGCTCCGGACCGCCTCG--------------------CGCATGT--------CTCGTCCGGAACTCTTGGTTGC-AGGTCAAACATCTAGACTTTTCTTGACATCTTACTGACTCCAGGCC---------------------------------------------------------------------------------------------------------------
#=GS VanFra/1-285 DE BEDY01000005.1:c704177-703893 Vanrija fragicola DNA, scaffold: scaffold_5, strain: JCM 1530, whole genome shotgun sequence
VanFra/1-285                            ------------TTTGAACCCCACACTCCAGTCAAGGCCATTTGTGCG---CTTCGGCG---------TTTCCTACGCAGATGGACTGTTACGAGAGTGGGAGAACGAGCTCCTC---TCCGCCA--GTGTCCCACCTC------ACTTCCCCCGTTTTGGGGGTAC----------GAGGCTAAAAAGTCGGG--GCCCGTTTTGGGC-TCCTTCGAGGGA-TCAGGAGAGAG-AGTCGGATTGCCTAATTGAGTTGGGATACTAGACCGCCT-------------------CGCGCACTTC-------CTCGTCTGGATCTCTTAGTTTTGGGGCAAGACATATTCCTTGCGGTTCAGT---------------------------------------------------------------------------------------------------------------------------------
#=GS PapTer/1-409 DE JAHXHD010000516.1:c15895-15486 Papiliotrema terrestris strain LS28 scaffold-515, whole genome shotgun sequence
PapTer/1-409                            ------------------TCCCACACTCCAGTCAAGTACATCCGCAGC---CTTCGGGCAG---------TCCTACGCGTTTGAACTGTTACGAGAGTGGAAGAGCAAG-CGTCATCTCCCGCCTC-GTGCCCCACCTT-------GACACTACGTCTTGTAGTC--------TGTCGAGGCCACAAAGCTTTCT-CTCCGTCTTGGAGG-ATTGCGAGGGG-CCAGGGAGGTA-CGGTAGTAGGCCTAATTGAGTTGGGATCTGGGTGTCGCT------------GTTTCATTCAGCGAAA-----TTCCCAGCCTGGACCCCTTGGTTTT-TGGCATGACATCTGTTTCTCTATTCCCGTAACTTTGTTTGTGCGGGACTGACGAGCAGGCTCGATGGGTCAAGCACTTGTCCCTCTCTGCGCCGACGATCGCCTGCCATGCGAGCATCAACAACTCGTTCGGTAAAGGAGCTTTG------------
#=GS CryFla/1-309 DE CAUG01000363.1:c181738-181430 Cryptococcus flavescens NRRL Y-50378 WGS project CAUG00000000 data, contig NODE_681_length_189955_cov_46_433445, whole genome shotgun sequence
CryFla/1-309                            ------------------ACCCACACTCCAGTCAAGTACATTCGCAG---CCCTCGGGCAG---------TCCTACGCGTTTGAACTGTTACGAGAGTGGAAGAGCAAGCGTCACC-TCCCGCCTC-GTGCCCCACCTT-------GACACTGCGTCTTGCAGTCTG--------TCGAGGCCACAAAGCTTTC-TCTCCGTCTTGGAGGA-TTGCGAGGGG-CCAGGGAGGTA-CGGTAGTAGGCCTAATTGAGTTGGGATCTGGGTCTCGCT--------------GCTCTATAGCGAAC-----CTCCCAGCCTGGACCCCTTGGTTTT-TGGCATGACATCTGTTTCGCAAGCCCCATAACGTGTTTGTGCGGGAC--------------------------------------------------------------------------------------------------------------
#=GS PapLau/1-279 DE JAAZPX010000027.1:286990-287268 Papiliotrema laurentii strain IF7SW-F4 scaffold46_cov194, whole genome shotgun sequence
PapLau/1-279                            ------------------TCCCACACTCCAGTCAAGTTCATCCGCGGCCCTTTGCGGCA----------CTCCTACGCGTTCGGACTGTTACGAGAGTGGAAGAACAAGCGTTTT-CCCCCGCTTC-GTACCCCACCT-------AAGCCCCGCGTCTTGCGGGCCGCA--------TAGGCCACAAAGTCATC--TACCGTTTTGGGAGG-TGACGAGGGG-TCAGGGGGATCACGGTGGTAAGCCTTATTGAGTTGGGATCCAGGTGCTTCATT--------------------GCACATAG------CCAGCCTGGATCCCTTGGTTTT-AGGCATGACATCTTTTCAACTC---------------------------------------------------------------------------------------------------------------------------------------
#=GS TriGue/1-265 DE BCJX01000005.1:c744990-744726 Trichosporon guehoae DNA, scaffold: scaffold_4, strain: JCM 10690, whole genome shotgun sequence
TriGue/1-265                            ------------------ACCCACACTCCAGTCAGGGCTAGGCGCAGA---------------------TTATCACGCACCTGGACCGTTACGAGAGTGGAAGAACAAGCACCGT---TCCGCCA--GCGTCCCACCCTC--------GCGCCCGTTTTGGGTTTGC---------GGGGGCCCAAAAGTCGGC--GCCCGTTCTGGGCG-TCGGCGAGGGGCCCAGGAGCGG---TTGTCACGGCCTAATTGAGTTGGGCTCCGGACCGCCGTC-------------------GCGCACG--------TCTCGTCCGGAACTCTTGGTTTT-GAGCCCATACATTTTTACAAACATTTT----------------------------------------------------------------------------------------------------------------------------------
#=GS ApiBra/1-274 DE JAMALJ010000023.1:c571469-571196 Apiotrichum brassicae strain M2204 ctg_23, whole genome shotgun sequence
ApiBra/1-274                            -----------------TCCCCACACTCCAGTCAGGACTAGACGCACG---CTTCGGCATG----------TACACGCAGCTAGACCGTTACGAGAGTGGGAGAACAAGCACCT---CTCCGCCA--GTGTCCCACCTCC--------GACCCCGTCTTGGGTGT---------TCGGGGGCCAAAAAGTTGGC--GACCGTTTTGGTCG-TCGGCGAGGGGCCCAGGGGAGG---TTGCAGCGG-CTCACAGAGTTGGGTTCCGGGCCGCCTC---------------------GGCACC-------TTCTAGTCCGGACCCCTTAGTTGC-TAGCCACACATTTCTCCGATAATCTTTTT--------------------------------------------------------------------------------------------------------------------------------
#=GS TreMes/1-284 DE SDIL01000003.1:121990-122273 Tremella mesenterica strain ATCC 28783 supercont1.3, whole genome shotgun sequence
TreMes/1-284                            ---------------CCACACCACCCTCCAGTCAAGATCATATGCGCG---CTTCGGCA---------TTTCCCACGCACATGATCTGTTACGAGAGTGGAAGATCAAGGCAGT----CCCGTTTT---GCCTCTCCTC-------GGAACCTCGTCTTGAGCTTTC---------TGAGGATCAT--GTTGTC---TCCGTTCTGGGGG---CAGCTGGGGTTTTGGGATT----TTGCTGTAGACCTAAAGAGTTGGGATCAGGACCGTCCAAT------------------GGACACGA------TTGTCGTTTTGATCCCTTGGTTT-GAGGTCAAACATTTGTACTTCCATGCTCCGTCAGACTCT-----------------------------------------------------------------------------------------------------------------------
#=GS TreFuc/1-298 DE BRDD01000129.1:c29699-29402 Tremella fuciformis NBRC 9317 DNA, KCNB80TF.129, whole genome shotgun sequence
TreFuc/1-298                            ----------------TGCACCACCCTCCAGTCAAGATTATCTGCGCG---CTTCGGCA----------TTTCTACGCATTTGGTCTGTTACGAGAGTGGAAGAACGAGCGCTTT--CCCCGTCT--GTGCCTCTCCTCTTC------GTCACCGTCTTGGTGGC----------ACGAGGATCAT--GCTGCG---TCCGTTCTGGACG--CTGGCTGGGG-TCAGGGGAAG----CGATGGAGACCTAAAGAGTTGGGCTCTGGGCCGTC-------------------GAGAGACAC--------TTTTCGCCTGGATCCCTTGGTTT-GGGGTCTGACATCGTTTCGTTCGGCTTGCGTTTGTGCTGTAAAGGGCATCCGCTG-------------------------------------------------------------------------------------------------------
#=GS TreYok/1-277 DE BRDC01000025.1:c210276-210000 Tremella yokohamensis NBRC 100148 DNA, KCNB35TY.25, whole genome shotgun sequence
TreYok/1-277                            ---------------TTGCACCACCCTCCAGTCAAGATTATCTGCGCG---CTTCGGCA----------TTTCTACGCATTTGGTCTGTTACGAGAGTGGAAGAACGAGCGCTT---CCCCGTCT--GCGCCTCTCCTCTTC------GTCACCGTCTTGGTGGC----------ACGAGGATCAT--GCTGCG---TCCGTTCTGGACG--CTGGCTGGG-GTCAGGGGAAG----CGATGGAGACCTAATGAGTTGGGCTCTGGGCCGTC-------------------GAGAGACA--------TTTTTCGCCCGGACCCCTTGGTTT-GGGGTCTGACATCGTTTCGTTCGGCTTGCGTATG----------------------------------------------------------------------------------------------------------------------------
//

• Image source 5.1:

# STOCKHOLM 1.0
#=GF RW van Nues, September 2023
#=GF https://coalispr.codeberg.page/paper
#=GS HACAcnag12523/1-180 DE ncrna 5:175538:175718:1
HACAcnag12523/1-180                ---------------------------------------------------------AGATCA-AAAAAC---ATGGTTTTCCATCTGCCATGCT-----CCTACGTCAGATT--------ATTCTACGCGC---TAGGGGTGCTCATGGAGA----TTCACTAGACGGACGGATTAGTGTCTCGAAACTAT--TAGGAAACCCTTCTCTCGTTGCC-----------TACGTGGTATGAGAG-TCGGGTGCTGAATGTCTCGATACAGATTTTT---------------------------------------------------------------------------------------------------------------------------------------------
#=GS pre-HACAcnag12523/1-231 DE 5:175538:175769:1
pre-HACAcnag12523/1-231            ---------------------------------------------------------AGATCA-AAAAAC---ATGGTTTTCCATCTGCCATGCT-----CCTACGTCAGATT--------ATTCTACGCGC---TAGGGGTGCTCATGGAGA----TTCACTAGACGGACGGATTAGTGTCTCGAAACTAT--TAGGAAACCCTTCTCTCGTTGCC-----------TACGTGGTATGAGAG-TCGGGTGCTGAATGTCTCGATACAGATTTTTAC-TGGGGCTTGATGTGTCTTTTATGAATGTATGGGTTTTTCAGGCCAGCTT-----------------------------------------------------------------------------------------
#=GS CNAG_12523-expressed/1-228 DE 6: [164,107 - 164,335] (+228)
CNAG_12523-expressed/1-228         ---------------------------------------------------------AGATCA-AAAAAC---ATGGTTTTCCATCTGCCATGCT-----CCTACGTCAGATT--------ATTCTACGCGC---TAGGGGTGCTCATGGAGA----TTCACTAGACGGACGGATTAGTGTCTCGAAACTAT--TAGGAAACCCTTCTCTCGTTGCC-----------TACGTGGTATGGGAG-ATGGGTGCTGAATGTCTCGATACAGATTTTTAT-TGGGGCTTGTTGTGTCTTTTATAAATGTATGGGTCTT-CAGGACAGC-------------------------------------------------------------------------------------------
#=GS WM276/1-252 DE CP000290.1:160297-160548 Cryptococcus gattii WM276 chromosome E, complete sequence
WM276/1-252                        ---------------------------------------------------------AGATCA-AAAAAC---ATGGTTTTCCATCTGCCATGCT-----CCTACGTCAGATT--------ATTCTACGCGC---TAGGGGTGCTCATGGAGA----TTCACTAGACGGACGGATTAGTGTCTCGAAACTAT--TAGGAAACCCTTCTCTCGTTGCC-----------TACGCGGTATGGGAG-TCGGGTGCTGAATGTCTCGATACAGATTTTTAC-TGGGGCTTGTTGTGTCTTTCGTATGAATGTGTCATCAATGTTAATAGCATTTGTTTACAGAGCCATCCTG--------------------------------------------------------------------
#=GS R265/1-242 DE CP025764.1:c1158320-1158079 Cryptococcus gattii VGII R265 chromosome 6, complete sequence
R265/1-242                         ---------------------------------------------------------AGATCA-AAAAAC---ATGGTTTTCCATCTGCCATGCT-----CCTACGTCAGATT--------ATTCTACGCGC---TAGGGGTGCTCATGGAGA----TTCACTAGACGGACGGATTAGTGTCTCGAAACTAT--TAGGAAACCCTTCTCTCGTTGCC-----------TACGCGGTATGGGAG-TCGGGTGCTGAATGTCTCGATACAGATTTTTAC-TGGGGCTTGTTGTGGCTTTTTGTGTCTTCCGTATGAATGTGTCATCAATGTCAATAGCAT------------------------------------------------------------------------------
#=GS CryVH5/1-188 DE JANBXI010000019.1:109049-109236 Cryptococcus sp. VH57_BW 19, whole genome shotgun sequence
CryVH5/1-188                       ---------------------------------------------------------TTATCAAAAAAGC---ATGGTTTCTTATCTGCCATGCT-----CCTACGCCCGGCTTCAC---GGCAATACGCGA---TAGGGGTGCTCATAAGGA----CTCTCTAGACGGACGGATTAATGTCTCGAAACTAT--TAGGAAACCCTATTCTCGTTGCC-----------AAAATGGTATGGGAT-CGGGGTGCTGAATGTCTCGATACA-ATTTATATA------------------------------------------------------------------------------------------------------------------------------------------
#=GS KwoDej/1-193 DE ASCJ01000050.1:242508-242700 Kwoniella dejecticola CBS 10117 cont1.50, whole genome shotgun sequence
KwoDej/1-193                       --------------------------------------------------------CTCATCAAAAAAGC---ATGGTTTTTCCCCTGCCATACT-----CTTCGATCAGAGGCTTT---CTCAAGCAGACGTTGTAAGGGCGCTCA-GGAAA----TTCTCTAGACGGACGGATTAATGTCTCGAAACTAT-ATAGGAAACCTTGCTTTCGTGGCC-------ATTAATATTGGTGTGAAAG-TGAGGTGCTCACTGTCTCGATACA-ATTTTT---------------------------------------------------------------------------------------------------------------------------------------------
#=GS KwoBes/1-211 DE ASCK01000032.1:179475-179685 Kwoniella bestiolae CBS 10118 cont1.31, whole genome shotgun sequence
KwoBes/1-211                       -------------------------------------------TCTTTTCTTCTTTCAGATCA---AAAC---GTGGTTTCTCTTCTGCCGCACT------CTGGAAATGCTCCT-----CACATTAC--------CAGGGCGCTCA-AGAGA----TTCTCTAGACGGACGGATTAATGTCTCGAAACTAT-ATAGGAAACCTTTCTTTCGTTTGT-------TAAATTTAAAACGTGGAAG-TGAGGTGCTGAACGTCTCGATACAGGTTTATAAGTTGTGGAAATGCATA---------------------------------------------------------------------------------------------------------------------------
#=GS CryFlo/1-216 DE RRZH01000004.1:274536-274751 Cryptococcus floricola strain DSM 27421 chromosome 4, whole genome shotgun sequence
CryFlo/1-216                       -----------------------------------------------------CCTGCGCTACTTTCGAC----TCTCTCGCCTTCTGAAACATGGAGTGGGAGGGGGTCGTT------GGACTCTACGCGTC-TAAGGGGTGCTCATGGAGA----TTCACTAGACGAACGGATTAGTGTCTCGAAACTAT--TAGGAAACCCTTCTCTCGTTGCC-------------ATTGGTATGGGAA-TAGGGTGCTGAATGTCTCGATACAAGTTTTTACCTGGGGGCTCTGTCTATATGAAT--------------------------------------------------------------------------------------------------------------------
#=GS CryWin/1-215 DE AWGH01000007.1:217680-217894 Cryptococcus wingfieldii CBS 7118 supercont1.7, whole genome shotgun sequence
CryWin/1-215                       -------------------------------------TTCCATCTGCCATGCTCCTGCGCTACTTTCGAC----TGTCTCGCCTTCTGAAACATGGAGTGGGAGGGGGTTGTT------GGAATCTACGCGTC-TAAGGGGTGCTCATGGAGA----TTCACTAGACGAACGGATTAGTGTCTCGAAACTAT--TAGGAAACCCTTCTCTCGTTGCC-------------ATTGGTATGGGAA-TAGGGTGCTGAATGTCTCGATACAAGATTTTACCTGGGG-------------------------------------------------------------------------------------------------------------------------------------
#=GS CryAmy/1-245 DE MEKH01000006.1:c1317699-1317455 Cryptococcus amylolentus CBS 6273 supercont2.6, whole genome shotgun sequence
CryAmy/1-245                       ------------------------------------------------ATGCTCCTGCGCTACTTTCGAC----TCTCTCGCCTTCTGAAACATGGAGTGGGAGGGGGTCGTT------GGACTCTACGCGTTCCAAGGGGTGCTCATGGAGA----TTCACTAGACGAACGGATTAGTGTCTCGAAACTAT--TAGGAAACCCTTCTCTCGTTGCC-------------ATTGGTATGGGAA-TAGGGTGCTGAATGTCTCGATACAAGTTTGTACCTGGGGGCTCTGTCTATGAATTGTTGTTGTCTACACCTCTCGATTC---------------------------------------------------------------------------------------------
#=GS KwoSha/1-238 DE NQVO01000032.1:216528-216765 Kwoniella shandongensis strain CBS 12478 scaffold00032, whole genome shotgun sequence
KwoSha/1-238                       ----------------------------------------TGGTTCTTCTTCTGCCGCACTCT----------ATCGTTAG---TCTGATCTGGGCTTTTCAGCCATTATATT---TCATACCCCAACGCGAC---TAGGGCGCTCA-AGAGGA---TTCACTAGACGGACGGATTAATGTCTCGAAACTAT--TAGGAAACCCATATCTCGTTGGCGAGCAAA--AAAACTCGTTGTGGGAA-TTGGGTGCTGAATGTCTCGATATATCTTTTTATACTGTGCTTGCTGCTTGTCATCAGAATGT--------------------------------------------------------------------------------------------------------------
#=GS KwoMan/1-212 DE ASQF01000007.1:c551732-551521 Kwoniella mangroviensis CBS 8886 cont1.7, whole genome shotgun sequence
KwoMan/1-212                       -------------------------------CCTTTTCTTTTCTCTCTTCTTTCTTCCGATCA----AA----GTGGTTTCTCTTCTGCCGCACTCTGTAG----------------ATGACCTTCACAT---CAACAGGGCGCTCA-AGAGA----TTCTCTAGACGGACGGATTAATGTCTCGAAACTAT-ATAGGAAACCTTTCTTTCGTTTTTG--------TTAATATAACGTGGAAG-TGAGGTGCTGAATGTCTCGATACAA-TTTTTAATAGATATCT----------------------------------------------------------------------------------------------------------------------------------
#=GS CryGC7/1-231 DE JALPBX010000013.1:c201472-201282 Cryptococcus sp. GC_Crypt_7 iso00_79_13, whole genome shotgun sequence
CryGC7/1-231                       -------------------------------------------TCTTGTTTTTCTTCTTATCA--AAAGC---ATGGTTCCCCTTCTGCCACGGCTAGTCGCCAGGCCTATT---ATACAGGCACAACGCGACCTATATGCTGCTCA-AGGGG----TTCACTAGACGGACGGATTAATGTCTCGAAACTAT--TAGGAAACCCTCTGCTCGTCGCGG-------TCATACTCCGTATGGGCTCTGTGGTGCCAAATGTCTCGATATAGTTTTGTACTTCTCATCATACGTTTAGT------------------------------------------------------------------------------------------------------------------------
#=GS CryGC5/1-268 DE JALPBZ010000106.1:64558-64825 Cryptococcus sp. GC_Crypt_5 iso00_58_106, whole genome shotgun sequence
CryGC5/1-268                       --------------------------------TCTCACTCTTTCTCTTTCTTCTTCTTTATCA--AAAGC---ATGGTTCCCCTTCTGCCACGGCAAGTTGTCAGGCCTAT----ATACAGGCACAACGCGACCTATATGCTGCTCA-AGGGG----TTCACTAGACGGACGGATTAATGTCTCGAAACTAT--TAGGAAACCCTCTGCTCGTCGCGGC------CAAAAAACCGTATGGGCTCTGTGGTGCCAAATGTCTCGATATAGTTATGTACTTCTCCTTGTACCTTTATTGTTGTCATGTGATGTTACTGCTGCCT----------------------------------------------------------------------------------------------
#=GS CryGC3/1-368 DE JALPCB010000299.1:c4764-4397 Cryptococcus sp. GC_Crypt_3 iso00_45_299, whole genome shotgun sequence
CryGC3/1-368                       -------------------------------CTCTCATTCTTTCTCTTTCTTCTTCCTTATCA--AAAGC---ATGGTTCCCCTTCTGCCACGGCTAGTCGTCAGGCCTAT----ATACAGGCGCAACACGACCTA-ATGCTGCTCA-AGGGG----TTCACTAGACGGACGGATTAATGTCTCGAAACTAT--TAGGAAACCCTCTGCTCGTCGCGGCGACGTTCAGCGTTCCGTATGGGCTCTGTGGTGCCAAATGTCTCGATATAGTTATGTACTTCTCCTGTAGCCTTTTTGTTGTCATGCGATATTACTGCTGCCTCTACCGAAGCTGCTGCGTTGTTTCGTCACAGTTGTGCTCCCTCAAAGTGCGGGACTGAAGCAGGTGTCCTGTGCGCTTAGGGCTACCAGTGCACA
#=GS TreTag/1-261 DE CAJHEQ010000057.1:c12761-12501 MAG: Tremellales sp. Tagirdzhanova-0007 genome assembly, contig: TREM_57, whole genome shotgun sequence
TreTag/1-261                       -------------------------------------------------CCTGATCCCGAACA-----ACA--GTGGGCTCCCATCTGCCAT----GCCACCTCGGACCGATGTG---------CTCCACGCTGA-GGCGGTGCTCATGGGAGA---CGCACTAGACGGATGGAGTAGTGCCTCGAGACTAT-ATAGGAAGCCTACCCTCT-------------CACAACACTCGTATGAGGAAGTGGGCGCTGAATGTCTCGATACA-TTTTCTAGGTAGATTTGAACATTTTGTCGGGGAGATAGGTGGTGTCGTACTCGAGTACAGAAGACTGGGTGTCGTGAGCC-------------------------------------------------------------------
#=GS NaeEnc/1-298 DE MCFC01000002.1:c1065049-1064752 Naematelia encephala strain 68-887.2 BCR39scaffold_2, whole genome shotgun sequence
NaeEnc/1-298                       ---------AAAAAGTATATGGTTCGCTCTCTGCCGCAGCTTTAGTAG---TGTC-TTGATTCTCTC------TTGGATG-TAATCTGAAGAGAATCAAAC------ACCC----------------CATGACCTTTTAGCCGCTCA-GAGCGA---TTCACTAGACGAACGGATTAATGTCTCTGGACTAT--TAGGAAACTT---GTCAAT-------------------CTATGTGGTTGATCGAGTGCTGAATGTCTTGATACAATTCTACTTCTCTCTCTTCTCTCTCTCCCATCTTCTGTCTCGCTCTCTCTCCCATCTTCTGTCTCGCTCTCTCTCTCTCTCTCTCTCTCTCTCACTTCTT------------------------------------------------
#=GS NaeAur/1-304 DE JAKFAO010000009.1:c1294581-1294278 Naematelia aurantialba strain NX-20 Contig9, whole genome shotgun sequence
NaeAur/1-304                       -------------------TGGTACGTCCTCTGCCGCAGCT--CGCAG--------TCGACGCCAA--------CGCCCACGCCCACGCA-CGCATGCGTG------AC--GTGGTCGGTCAGTGGCCGCG-------AGCCGCTCA-GGACG----CTCTCTAGACGGACGGAGTCGTGTCTCGGGACTAT--TAGGAAATCCCCCGTCTGGCCTGCGG----TCGCCGTGGGTGGTGGGCGAGGGGGTGCTGAATGTCCCGATACA-TCGTGTTTTGCTTCTGCCTTCTCTCCTCTTCGCCACGTCTTCCCTCTGTCTCTCCCTTCTGTCACCTGTCGTTCAGGTCGCTTCTCTCGCGTGCTCTCGT-----------------------------------------------
#=GS CrySki/1-309 DE BCHT01000001.1:c395076-394768 Cryptococcus skinneri DNA, scaffold: scaffold_0, strain: JCM 9039, whole genome shotgun sequence
CrySki/1-309                       ---------------AGCCTCATCCACCTCTTATCAAATCCACACGAGAGACCCAGCTGACCAGAACCACA----GGTTCCTTCTCTGCCATGCCCTTC--CACGTTGATCC-------------AGACCG----GCAGGGTGCTCA-GAAGG----TTCACTAGACGAACGGATTAATGCCTCGAAATTGT-ATAGGAAACTGGCCTCCTTG-----------------AATGGTG-GGAGCGTTATGTGCTGAATATCTCGATACA-TATCATAGATTTCCAGTGTGGATCCTTGTATTGTTGTAACGTGTCTACATTGGGCTTTGATTGAGTCTGACGAAGATGAACAGAAAAGCTTAGTGCCATGTGA--------------------------------------------
#=GS TreYok/1-250 DE BRDC01000019.1:c274165-273916 Tremella yokohamensis NBRC 100148 DNA, KCNB35TY.19, whole genome shotgun sequence
TreYok/1-250                       ---------------------------------CCGCCGCGTCCTGTTCTTCTTCTTTGATCAAAACTTC---ATGGACTCCCT--TGCCATGCTGTTA---CCGACGCATAC-----TCCGTCCTCGTCGGGCA-----GTGCTGTGGGAGGATA-TTCACTAGACGGACGGATTAGTGCCTCGGATTCAT--TAGGAAACCCGGTCCTGCCT---------------AACGAAAATGGGGGATTGGGTGCTGAGAATCACGATACA-TATACA-GTACACATGCAGCAGGATACTGTGGGTTGTTATACGGCGGCTGGA-----------------------------------------------------------------------------------------------
#=GS TreFuc/1-304 DE BRDD01000062.1:158462-158765 Tremella fuciformis NBRC 9317 DNA, KCNB80TF.62, whole genome shotgun sequence
TreFuc/1-304                       ----------------------------------------GTCCTGTTCTTCTTCTTTGATCAAAACTTC---ATGGACTCCCT--TGCCATGCTGTTA---CCGACGCATAC-----TCCGTCCTCGTCGGGCA-----GTGCTGTGGGAGGATCTATCACTAGACGGACGGATTAGTGCCTCGGATTCAT--TAGGAAACCCGGTCCTGCCT---------------AACGAAAATGGGGGATTGGGTGCTGAGAATCACGATACA-TATACATATACACCTGCAGCGGGATGCTAGCAGTAGTCATACGACGGAGGGATGGAGACTGCGTTGCTTATCTTCGTATGCATCTCGTGTCACTCCTATGTCTTGCTTGAC------------------------------------
#=GS BulALb/1-305 DE CAMYTR010000141.1:666682-666986 Bullera alba genome assembly, contig: jcf7180000012242, whole genome shotgun sequence
BulALb/1-305                       ------------------ATTTCAACTCTCTTCTCCTCTTTCTTCCAGCCTTTTCTTTGATCAAA---------TGGTTCTTCCTACTGCCACA----GTGATTGGCGCCTAC------------CCAACGCCCTTCT--CCGTCCA--AGGAG---TTCACTAGACGAACGGATTAACGTCTCGATGACTATATAGGAAACCTCTCTTCTGT-------------CACGATCAGAGAGAAGACGACGGTGCTGAATGTCTCGATACA-TGTGTTTGGATATGTATGGTCATTGTCTGCCTGCGATGTATGTTTTGAATGTGGTTACCTCCTTCCGAGCAGATGGCACGATGGTGCTGCAGACTCTGGA-----------------------------------------------
#=GS PapLau/1-301 DE JAAZPX010000031.1:c105133-104833 Papiliotrema laurentii strain IF7SW-F4 scaffold57_cov212, whole genome shotgun sequence
PapLau/1-301                       --------------------------------------------TACACCTTTTCTTTGATCAAAA--------TGGTTCTCCCTCCTGCCACACTT-GCGCACTATAATCTCTGTAGAGAGATCGTACAGTGTGTGT-CTTGCGTCCAAGGGG---TTCACTAGACGGACGGATTAACGTCTCGAGATAAT--TAGGAAACCCCCCTTTCGTGTCCT--------CAACGAGGGCCAGGGGAGGGGGGTGCTCAGCATCTCGATACA-TTTTGTAGAATTCAGCTTTGGGGTTGTTTCTCCTCTCCGATGCACAGTTTGTCTGCTTTGCTCCTTGCTCTCGCTGCAGCCTGCTCCCGCTTGCCTAGGC-----------------------------------------------
#=GS CryFla/1-266 DE CAUG01000500.1:c45144-44879 Cryptococcus flavescens NRRL Y-50378 WGS project CAUG00000000 data, contig NODE_1113_length_92205_cov_46_442211, whole genome shotgun sequence
CryFla/1-266                       ------------------------------------------------------CAGGCATCAAAAAAGC---ATGGTCTCCCAATTGCCACGCTTAGGCGCAAGAACA-------------CTCCACGCGCAACACAA-GTGCTA--AGGGA----TTCACTAGACGGACGGATTAACGTCTCGAGGTTAT-ATAGGAAACCCCCTATTCGGTTTT---------------CAGGACGAATCTGGGGGTGCTCACAACCTCGATACA-TCTGTATACTTTCAGTCATGCATTTTATGGCGGATAGCTTGGGCCTGGAGCGAGGACTGAGATGCTTGAAAGGCTTGGGCATGGCTCGCGA--------------------------------------------------------
#=GS PapTer/39-314 DE JAHXHD010000801.1:6165-6478 Papiliotrema terrestris strain LS28 scaffold-800, whole genome shotgun sequence
PapTer/39-314                      GGTCGCTGCTGGGCAGCCCATCTTGATCTGTTCACCCTCACCCATCGTTTTTTTCTTTGATCAAA--------ATGGTTTCCCTTCTGCCACGCTTAGGCGCTAGACCA------------TCACCACGCGCA-CACAA-GTGCTCA-AGGGA----TTCACTAGACGGACGGATTAACGTCTCGAGGTTTT-ATAGGAAACCCCCTTTTCGGTTTTTT--------------CAGACGAAACTGGGGGTGCTCACAGCCTCGATACA-TTTGTACACCTGCGCGATATGCATCCAATGGCGGACACATAGTGATTGGA-------------------------------------------------------------------------------------------------
#=GS TriGue/1-297 DE BCJX01000008.1:1180690-1180986 Trichosporon guehoae DNA, scaffold: scaffold_7, strain: JCM 10690, whole genome shotgun sequence
TriGue/1-297                       ------------------------------GCGACCGTTGAACATTCTTTTCCCCTCAGATCAAATATT--TTATGGGCCCTCCTCTGCCACCGGAC-ACGCAC---GATCC---------------CACGCGCGTGTC-CTGCCTC-GGAGGGA--CTCACTAGACGGACGGATTAGTGTCTCGACACCGT--TAGGAAACCC---GCTCGTTTG--------------ACGCCATCGGCGAG-AGGGTGCTG-GTGTGTCGATACAGCTTTATGCACAACTCTTCTTTTTTCCCCTTTCATGTAGTGCCGTTGGCGAATGGATTTGGTGCTTGTCATGTTTTGTGTCGTGCTCGTTGTCGCCGCAACGTCG-------------------------------------------
#=GS CutDas/1-288 DE BEDX01000005.1:c105934-105647 Cutaneotrichosporon daszewskae DNA, scaffold: scaffold_5, strain: JCM_11166, whole genome shotgun sequence
CutDas/1-288                       ------------------------------TTGACGTTGCTTTCCTCTCTTCTTCTTTGATCAAA-------TCTGGGCACCTCACTGCCATGGGTCGCGCGCCGCTAA------------------CACGGTCGCGAC-CTGCCTC-GAGGGAG--CACACTAGACGGACGGATTAGTGCCTCGACACCAT-ATAGGAAACCCGCCCTTTGCTT-------------------ATATCGAGGTGCGGGTGCTG-GTGTGTCGATACA-TTTAGCGTATGCAGTAGTTTTTCACCAGCGTGAGGGGAGCGAGGTGCGAGGAGTGCGAGGCGAGGCGGGGTCTCCCAGCTAAGATTTCTGGCCGGATTTC-----------------------------------------------
#=GS TriASa/1-241 DE SCGW01000152.1:c1119-879 MAG: Trichosporon asahii isolate N5_275_008G1 N5_275_008G1_scaffold_220, whole genome shotgun sequence
TriASa/1-241                       ------------------------------------ACGACACTTTGTTGTCTCCTCAGATCAA-AAAAA--TATGGGCCCTTCTCTGCCATGGGTTTGGGGCACGGCTAC----------------CACGCCCCTCAC-CTGC-CATGAAGGAG--CACACTAGACGGACGGATTAATGCCTCGACACCGT--TAGGAAACGT---GCTCGCTTG--------------ACGCCATCGGCGTGGTGCGTGCTG-GTGTGTCGATACAACTTGTACTTTTTACTTCTATGATATTTTTGGTTGTCTGCGAAACTTTTGCT------------------------------------------------------------------------------------------------
#=GS TriCor/1-241 DE JXYL01000008.1:1628717-1628957 Trichosporon coremiiforme strain JCM 2938 scaffold_0008, whole genome shotgun sequence
TriCor/1-241                       -----------------------------------CGTCGTGCAGACGTTACTCCTCAGATCAA-AATAC---ATGGGCCCTTCTCTGCCATGGGTTTGGGGCACGGCTAC----------------CACGCCCCTCAC-CTGC-CATGAAGGAG--CACACTAGACGGACGGATTAATGCCTCGACACCGT--TAGGAAACGT---GCTCGCTTG--------------ACGCCATCGGCGTGGTGCGTGCTG-GTGTGTCGATACAATTGTAGCTCTACTCTTATGGTATCCTGTGTCTGCGAAAGTTTGGCTGCGTT------------------------------------------------------------------------------------------------
#=GS TriInk/1-241 DE JXYM01000008.1:1124185-1124425 Trichosporon inkin strain JCM 9195 scaffold_0008, whole genome shotgun sequence
TriInk/1-241                       ----------------------------------------GTCCTTCTTGTCTCCTCAGATCAAAAAAAAATCATGGGCCCTTCTCTGCCATGGACGTGCGAGCACGGCTAC---------------CACGCTCCTCGT-CTGC-CATGAAGGAG--CACACTAGACGGACGGATTAATGCCTCGACACCGT--TAGGAAACGT---GCTCGTTTG--------------ACGCCATCGGCGAG-CGCGTGCTG-GCGTGTCGATACAGTTTGTACATGTCGCCTGATGAAAGTTTTGCCCCCCCGGCCCGGCCTGTGTGG-----------------------------------------------------------------------------------------------
#=GS ApiBra/1-249 DE JAMALJ010000007.1:c251815-251567 Apiotrichum brassicae strain M2204 ctg_7, whole genome shotgun sequence
ApiBra/1-249                       ----------------------------------AACATACTACGAGATGAATCTTCAGATCAA---AACA--ATGGGCCCTTCTCTGCCATAGTACGAGCTGACATCTCC----------------CACGTCCTCGTG-CCGC-CATGAAGGAG--CACACTAGACGGACGGACTAATGCCTCAGCGCCAT--TAGGAAACCT---ACTCTCTTG--------------ACGCCATCGGCGAG-TGGGTGCTG-GCGCGCTGATACA-TCTTTTTATATAGCGTAAACTGTAGTTTTGTAGTGTTTTGGGGTGTGATGGAGAGAATAGC--------------------------------------------------------------------------------------
#=GS TreMes/1-242 DE AFVY01000033.1:84566-84807 Tremella mesenterica DSM 1558 strain Fries TREMEscaffold_1_Cont33, whole genome shotgun sequence
TreMes/1-242                       -------------------------------------TCTTTCTCCCCACCTCTTCCTCATCA--AAAGC--TATGGCCTC---ACTGCCATGCCGACCGGTTCGTTAACCACTCCGGG---------ACGG--TGCTA-CTG---AGAGGGTATTCAACACTAGACGAACGGATTAATGCCTCGGGCCCAT--TAGGAAACCTAGTCTCTTCTTTT----------------CAATGAGTGA-CGGGGTGCTG-GCGGCTTGATACA-TTTGGTTTTTTTTTGTCGTAGGATGATATGCAACGATGTTTGTGTTCGTCTTC----------------------------------------------------------------------------------------------
//

• Image source 6.1:

# STOCKHOLM 1.0
#=GF RW van Nues, September 2023
#=GF https://coalispr.codeberg.page/paper
Annot/1-13                          -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGrGT--------------------------------------------------------------CTGA-------------------------------YAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS pre-HACAcnag12714/6-462 DE (33177) 33182:33559:1
pre-HACAcnag12714/6-462             -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGAACTCCTCCTTATAGGTAAGCAAAACTTCCCATTC-AGCCCTC---------------------------ATCGTTCATCTTGCTGATTATCTCATAA-----------------CtatagAGTCGCTTGATTGTCAC-----------TACTCTCACGAC-ACTCAGGTGCTCGGAG--------GCGCTCAGATTAACGCAAGTCTCCCTCTTCTAACCCAAGACGGAGGTTCGTTACAGCAGTCTTCTTGCCGTTCGGTCGGCG----CCTTGCTTATTTT-----GGATTGGCGGGGAATTGAAGGGTGAACGATACATCTTTCTCACTTTCTCAAATGTTCCGTCTGTAATGCATGGATGGATGTCTCTTA--TATTACAAATCGTTCTGTCG-TTTCAACGAAGTATCTTCACCACACCATTATTATGATCACATAGCAACGTTGACCAAGTCTCGT-TTATCT--AGATCAGCGGTAAGAAATATTCGCA-TAGGTAGAAGAATGCAGAAAACGTCGCACATCCCTAG--
HACAcnag12714_spliced/1-194         -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGAACTCCTCCTTATAG----------------------------------------------------------------------------------------------------------AGTCGCTTGATTGTCAC-----------TACTCTCACGAC-ACTCAGGTGCTCGGAG--------GCGCTCAGATTAACGCAAGTCTCCCTCTTCTAACCCAAGACGGAGGTTCGTTACAGCAGTCTTCTTGCCGTTCGGTCGGCG----CCTTGCTTATTTT-----GGATTGGCGGGGAATTGAAGGGTGAACGATACATCTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS CNAG_12714/1-475 DE CP003826.1:c1370904-1370430 Cryptococcus neoformans var. grubii H99 chromosome 7, complete sequence
CNAG_12714/1-475                    -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTCCCTTTTCTTCTCCAAGAACTCCTCCTTATAGGTGAGCAAACCTACCCATTCTAATCCTC---------------------------ATTGTTCACCTTGCTGACTATCTCATTA-----------------CTATAGAGTCGCTTGATTGTCAC-----------TACTTCCACGAC-ACTCAGGTGCTCGGAG--------GCGCTCAGATTAACGCAAGTCTCCCTCTTCTAACCA-AGACGGAGGTTCGTTACAGCATTCTTCTTGCCGTTCGGTCGGTG----CCTTGCTTATTTT-----GGATTGGCGGGGAATTGAAGGGTGAACGACACATCTTTCTCACTTTCTCAAATGTTCCATTTGTAATGCATGTATA----TCTCTTATGTATTATGAATCGTTCTGTCGCTTTCAACGAACGAAGT-ATCGTCGTCATTATTATTATCCCATAGCAACGTTGATCAAGTTTCGTTTTATCTATAGACCACCGGCAAGAAATATTCGCAATAGATAGAAGAATGCAGAAAACGCCGCACATCCCT----
CNAG_12714-expressed/1-193          -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGAACTCCTCCTTATAG----------------------------------------------------------------------------------------------------------AGTCGCTTGATTGTCAC-----------TACTTCCACGAC-ACTCAGGTGCTCGGAG--------GCGCTCAGATTAACGCAAGTCTCCCTCTTCTAACCA-AGACGGAGGTTCGTTACAGCATTCTTCTTGCCGTTCGGTCGGTG----CCTTGCTTATTTT-----GGATTGGCGGGGAATTGAAGGGTGAACGACACATCTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS R265/1-485 DE CP025763.1:c1277536-1277052 Cryptococcus gattii VGII R265 chromosome 5, complete sequence
R265/1-485                          -------------------------------------------------------------------------------------------------------------------------------------------------------------ATTCCTTTTCCTACTGTTTCTCTTTTTCTTCTCCAAGAACTCCTCCTTATAGGTAAGCAAACTCCCC-------GTTCAGCCCCC----------------------ATTGCTCATCTTGCTGATCCTTTCCTTTA----------------TTACAGAGTCGCTTGATTGTCAC-----------TACTCCCACGAC-ACTCAGGTGCTCGGAG--------GCGCTCAGATTAACGCAAGTCTCCCTCTTCTAACCCAAGACGGAGGTTCGTTACAGCAGTCTTCTTGCCGTTCGGTCGGCG----CCTTGCTTATTTT-----GGATTGGCGGGGAATTGAAGGGTGAACGATACATATT--TCACTTTCGCGAATGTTCTATTTGTAATGCATGTTCACCT-TATCATG---------AATCGTTCTGTCGCTTTCAACACTGAAGTA--TCGCTGTCTTTAC-ATGATCAGATAGCAATGTTTACCAAGTCTCCTCATTTATCTAGACCATCGGTAAGAAACATCGGCAAAGATAGAAGAATGTAGAAAACGCTGCACAGAGCCGTAGA
#=GS WM276/1-480 DE CP000291.1:c1287796-1287317 Cryptococcus gattii WM276 chromosome F, complete sequence
WM276/1-480                         -------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCCTGCTGCTGCTGTTTCTCTTTTTCTTCTCCAAGAACTCCTCCTTATAGGTAAGCAAACTCCCC-------GTTCAGCCCCC----------------------ATTGCTCATCTTGCTGATCCTTTCCTTTA----------------TTACAGAGTCGCTTGATTGTCAC-----------TACTCCCACGAC-ACTCAGGTGCTCGGAG--------GCGCTCAGATTAACGCAAGTCTCCCTCTTCTAACCCAAGACGGAGGTTCGTTACAGCAGTCTTCTTGCCGTTCGGTCGGCG----CCTTGCTTATTTT-----GGATTGGCGGGGAATTGAAGGGTGAACGATATATCTT-CTCACTTTCGTGAATGTTCTATTTGTAATGCATGTTCACCTGTATCATG---------AATCGTT--GTCGCTTTCAACACTGAAATA--TCCCTATCTTTAC-ATGATCACATAGCAATGTTTACCAAGCCTCCTCATTTATCTAGGCCATCGGTAAGAAACATCGGCAAAGATAGAAGTATGTAGAAAACGCTGCACAGAGCT-----
#=GS KwoSha/1-287 DE NQVO01000034.1:84078-84364 Kwoniella shandongensis strain CBS 12478 scaffold00034, whole genome shotgun sequence
KwoSha/1-287                        -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCTCTTCTTCTTC-CATAACGCGCCTCCTTATAGGTATGTCTAGTACCA----TTTGTTCGTGACAC---------------------GATCTGACCACACGCTGACCTCTTTTCACTCCA-------------TTGTAGAGTCGCTTGATTGTCGAAAAA-----TATAACCTCACGAC-AACCAGGTGCTCGGAA--------GCGCTAAGAGTGAAGCAAGTCTCCCTTCTCTAACACAGGACGGAGGTTCGTT-CAGTAGTCTTCC-ACCGTTCGGTCGGGTA---TCTCATTGTCATTCT---AGAAGCATGAGAAATGGAAGGGTGAACGATACATCGTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS KwoHev/1-224 DE ASQC01000043.1:158920-159143 Kwoniella heveanensis CBS 569 cont2.43, whole genome shotgun sequence
KwoHev/1-224                        -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGAACCCCTCCTTATAG----------------------------------------------------------------------------------------------------------AGTCGCTTGATGATCTAACCAAACAAATCAATCCTACGATACATCAGGTGCTCGGAG--------GGGCTCAGAATAACGCACGTCTCCCTCTTCGCTTTT-AGACGGAGGTTCGAGGTAGTTTGCTTCC-ACCGTTTAGTCGGGG----TCTCGTCTTTTCTCT---GAGTGGGACGAGAGAGGAAGTCTGTTCGATACATCTTTATATATATATATCTGTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS KwoDej/1-315 DE ASCJ01000060.1:17900-18214 Kwoniella dejecticola CBS 10117 cont1.60, whole genome shotgun sequence
KwoDej/1-315                        ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTACTTAGAACTCTTCCTTATAGGTAAGCGCATCCCCACCTTCCACCTCATCCACACCTCTCAACAAGCAACCAATCGAAAATGCACGTTGCTGACATCTCATTTCTTTATGTA---------CTACAGAGTCGCTTGGCTGTCTA------------CTTCCTACGACAAGTTAGGTGCTCGGAA--------GAGCTCAGAATAACGCACGGTTCCCTTCTC-AACGTAGAACGGAAGTTCGTC----CTTGCTTCCCACCGTTTAGTCGGGGTCTTGTTCGTCTGTCTTTGTT--GAGAGAATGAGAAACGGAGGTTGGGCGATACATCATATCATATCATATTCCTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS KwoBes/1-381 DE ASCK01000001.1:362426-362806 Kwoniella bestiolae CBS 10118 cont1.1, whole genome shotgun sequence
KwoBes/1-381                        ---------------------------------------------------------------------------------------------------------------------------------ACAACGGTAAGTAGGTGAAAAAGTTGAATATCATCGTCCTTGTCTTTCTTCTCTCTTCTCCAAAGAACTCTTCCTTATAGGTAAGCACACCCCTCTTTGCTATGAGTTGCC----------------------------------AGACCGAAGCTCATGTGTGCAAATGTTTA-------TATAGAGTCGCTTGACTGTCTA------------CCTCCTACGACAAGTTAGGTGCTCGGAA--------GAGCTCAGAGTGACGCACGGTTCCCTCCTTTTT---AGGACGGAGGTTCATT--GGTCTTCTC---ACCGTTTTGTCGGGGG----TTCATCTTATTATTAT--GAGAG-GTGAAGAAGGGAGGATGGATGATACATCTTATTTTAGTGGTCTACCTATGCATCGTATGTTCTGTGATAGCCTTTGGCATTGATGTTTCGAAAATT-------------------------------------------------------------------------------------------------------------------------------------------------
#=GS CryVH5/1-257 DE JANBXI010000085.1:14008-14246 Cryptococcus sp. VH57_BW 85, whole genome shotgun sequence
CryVH5/1-257                        --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTTTTCTTCATAGCCCCTCCTTATAGGTATGTTGTCTCCTGTTCTCTCTTCGCGTCCC-----------------------GGTGGACCACACGCTGACTGTTTTGT--------------------CACAGAGTCGCTTGATTGTCGC-----------AAATCTCACGAC-ACTCAGGTGCTCGGAA--------GGGCTCAGACTACCGCACGCCTCCCTCCTTTT----AGGACGAAGGTTCGTT-CAGCAGTCTTCC-GCCGTTCAGTCGGGG----CCTCGTCAGTTATT---------GGCCAGGAGTGGAAGGGTGAACGATACATTTTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS CryFlo/1-376 DE RRZH01000006.1:c29657-29282 Cryptococcus floricola strain DSM 27421 chromosome 6, whole genome shotgun sequence
CryFlo/1-376                        CAGGAGTCGGAGTGACAGTGGGATAGCAAGATAGATTGTAGAGATGCAGTGTCACGAGCGAAATAGATGTCTGCCAGAAAAGAGAGGAAAGTGTGGATGCCCACGGTGGAGGCACACGGAAAATGCCACGTCACCCCTCGCCCGCCAAACT---ACTGAAAAG-TCGCATCTCTTCTCTCTTTTCTTCTTCATCTGCCCCTCCTTATAG----------------------------------------------------------------------------------------------------------AGTCGCTTGGGTGTCGC---------ATATTCTCCACGAC-CTCCAGGTGCTCGGAA--------GGGCATAGACTAACGCACCCCTCCCTCTTTT----CAAGACGGTGGGTCGTT-CAGCAGTCTTCC-GCCGTTCGCTCGGTGA---CCTCGTCGGTTTTT------ACAGATGGGGATTGGAAGGGTGAACGATACATAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS CryWin/1-277 DE AWGH01000043.1:c49609-49333 Cryptococcus wingfieldii CBS 7118 supercont1.43, whole genome shotgun sequence
CryWin/1-277                        -----------------------------------------------------------------------------------------------------CACGGTGGAGGCACACGGAAAATGCCACGTCACCCCTCCCCCACCAAACT---ACTGAAAAGGTCGCATCTCTTTTCTCTTTTCTTCTTCATCTGCCCCTCCTTATAG----------------------------------------------------------------------------------------------------------AGTCGCTTGGGTGTCGC---------ATATTCTCCACGAC-CTCCAGGTGCTCGGAA--------GGGCATAGACTAACGCACCCCTCCCTCTTTT----CAAGACGGTGGGTCGTT-CAGCAGTCTTCC-GCCGTTCGCTCGGTGA---CCTCGTCGGTTTTT------ACAGATGGGGATTGGAAGGGTGAACGATACATATC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS CryAmy/1-277 DE MEKH01000004.1:c1550016-1549740 Cryptococcus amylolentus CBS 6273 supercont2.4, whole genome shotgun sequence
CryAmy/1-277                        --------------------------------------------------------------------------------------------------------GGTGGAGGCGCACGGAAAATGCCACGTCACCCCTCGCCCACCAAACTTCTTATGAAAAGGTCGCATCTGTTTTCTCTTTTCTTCTTCATCTGCCCCTCCTTATAG----------------------------------------------------------------------------------------------------------AGTCGCTTGGGTGTCGC---------ATATTCTCCACGAC-CTCCAGGTGCTCGGAA--------GGGCATAGACTAACGCACCCCTCCCTCTTTC----TAAGACGGTGGCTCGTT-CAGCAGTCTTCC-GCCGTTCGCTCGGTGA---CCTCGTCGGTTCTT------ACAGATGGGGATTGGAAGGGTGAACGATACATATC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS CryGC2/1-340 DE JALPCC010000066.1:43783-44122 Cryptococcus sp. GC_Crypt_2 iso00_70_66, whole genome shotgun sequence
CryGC2/1-340                        -------------------------------------------------------------------------------------------------------------------------------CCGTTCATTTGCTCCCGCTCTTCCCCCCTATAGCCAAATTCCAATCCCTTCTCTTTCTCTTCTTCACGGCCGCTCCTT-TAGGTATGTTCATCAGTAAAGTT------------------------------ATGAGGTGAACACAGAAGCTAACAG-------------------------TAACAGAGTCGCTTGATTCTTGA--------TAACTCTTCCACGAG-AATCAGGTGCTCGGAGCGTATTATTTGCCGAGAGCGAGTTCCGCCTCCCTCTTTTTCGAAAG-ACGGAGGTTCGTC-TAGTAGTCTTCC-AGGGTTCAGTCACGCGTTGTATCTAGTATTCCGAGAGGGATGTGGTACAGCTGGAAGGGTGGACGTTACATTACTATGTAGTATCAGAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS NaeEnc/1-280 DE MCFC01000007.1:157820-158099 Naematelia encephala strain 68-887.2 BCR39scaffold_7, whole genome shotgun sequence
NaeEnc/1-280                        --------------------------------------------------------------------------------------------------------------------------------------------------------GTTAAAACCTCGCAAAGAATGTTGCTCTTTTCTTTGCTTCATAGATACTCCATTTAGGTAACTAACTCTCGAAACCTCTC--------------------------------ATAGTATAGCATGCTGACCGAG------------------------TACAGAGTCGCTTGACCGTCGA-------------GTCCCACGAC-TCTCAGGTGCTCGGAG--------AATCTCAGATTACAGCCCGCCCCCCTCCTATAC---AGGACGGGGGTTCGTC-CAGTAGTCTTCC-GCGGTTCAGTCCGGG---TCCTCATACTCCTT----GCAAGGGTGGAGGACATGAAGGGTGGTCGATACATCTTGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS NaeAur/1-277 DE JAKFAO010000010.1:490807-491083 Naematelia aurantialba strain NX-20 Contig10, whole genome shotgun sequence
NaeAur/1-277                        -------------------------------------------------------------------------------------------------------------------------------------------------------------ACTCGAGTTTGGGTTGGACATGTCTGTCTTGCTTCATATATTCTCCATTTAGGCGAGTCTTTGCTCAAGCAATCCCGCC-------------------------------ATGATACAAGCTGACAATG------------------------CGTAGAGTCGCTTGATCGTCGC-------------TCTCTACGAC-GCTCAGGTGCTCGGAG--------AATCTTAGAGCAGAGTCCGCCCCCCTCTTGTTC---AAGACGGGGGTTCGTC-CAGTAGTCTTCC-GCGGTTCAGTCCGGG---TCCTTGTACTCCTT----CACAGGGTAGAGGAGGCGAAGGGTGGTCGATACATCTTGCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS CrySki/1-383 DE BCHT01000002.1:c1429807-1429425 Cryptococcus skinneri DNA, scaffold: scaffold_1, strain: JCM 9039, whole genome shotgun sequence
CrySki/1-383                        ----------------------------------------------------------------------------------------------------------------------------------------------------ACAGGCTTTATATCGCGGTATAACGAACAACACCTTTTCTCTCAACATCTCCTCCTTATAGGTGAGTCGTATTTCCTTTGG-----------------------------ACGCAATTGAGCGAGATCACTAATATCTGCTGGG----------------CCCCCAGAGTCGCTTGATTGCCGA--------TAACGCTCCACGGCAATATCAGGTGCTCGGAA--------GAGATCAGAGCCAAGTCCGCCCCCCTCTCTTTGC---AGACGGGGGTTCGTT-CAGTAGTCTTCC-GAGGTTCGGTCCGGGG-----TTGCGTCGGTTT-------CACGATGCGATTGGAAGGGTGGGCGATACATGTTATCCACTATGCAGATTGTACTACTCTTCAGCTTGGCATTTTGTGCAGCACTGAGCAATCGATAGCTGAGGAAAGACAAAATGTTTCGAG--------------------------------------------------------------------------------------------------------------------------
#=GS CryGC7/1-296 DE JALPBX010000024.1:217346-217641 Cryptococcus sp. GC_Crypt_7 iso00_79_24, whole genome shotgun sequence
CryGC7/1-296                        ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATCTTGTTTTCTCTTCCATACCGCTCCTCCTTATAGGTACGT-CTGCTAAACCATTTGT-----------------------------ATGAAGAAGGAATGAGCTAACACGGCACGATTCACG------------TTGCAGAGTCGCTTGATTGTCGA---------TATATACACACGAC-ACTCAGGTGCTCGGAG--------GAGCAGAGATTAACGCACGTCTCCCTCCTT----ATAGGACGGAGGTTCGTC-CACTCTTCCCAC--TGGTTAGGTCTGGAATTTTCCTGGTTCATCT-------AGGACGGAGAAACCGGAAGGTGGTCGATACATCTCGTCAATGCTTCTATCTGTCTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS CryGC3/1-286 DE JALPCB010000133.1:c5505-5220 Cryptococcus sp. GC_Crypt_3 iso00_45_133, whole genome shotgun sequence
CryGC3/1-286                        --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTTCTCCATACCGCTCCTCCTTATAGGTACGT-CCGCTCTCCCATTTCTGTACC---------------------AAAGCGATGACATGACGAGCTGACAACAAGAA-------------------CCGCAGAGTCGCTTGATTGTCGA--------TACAATTTACACGAC-ACTCAGGTGCTCGGAG--------GAGCAGAGATCAACGCACGTCTCCCTCCTT----ACAGGACGGAGGTTCGGC-CATTCTTCCTGC--TGGTCAAGTCTGGGATTCCCCAGTAGTCTGT-AAACAAAAGACGGGGAGAGTGGAAGGTGGCCGATACATCTCGTCTGTGTCTGTAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS CryGC5/1-296 DE JALPBZ010000105.1:48070-48365 Cryptococcus sp. GC_Crypt_5 iso00_58_105, whole genome shotgun sequence
CryGC5/1-296                        --------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTTCCTTGTTTTCTTCTCCATACCGCTCCTCCTTATAGGTACGCTCCGCTCTACAATCTCTGTGCC---------------------AAAGCAATGACACGACGAGCTGACAACAA----------------------TCGCAGAGTCGCTTGATTGTCGA--------TACAATACACACGAC-ACTCAGGTGCTCGGAG--------GAGCAGAGATCAACGCACGTCTCCCTCCTT----ACAGGACGGAGGTTCGGC-CATTCTTCCCAC--TGGTCAAGTCTGGGATTCCCCAGTAGTCTGT-AAATGATTGACGGGGAAAGTGGAAGGTGGCCGATACATCTCGTCAATGTCCGTAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS TriCor/1-286 DE JXYL01000007.1:1450083-1450368 Trichosporon coremiiforme strain JCM 2938 scaffold_0007, whole genome shotgun sequence
TriCor/1-286                        -------------------------------------------------------------------------------------------------------TAGTCCCGCTGCACACTGGTGCGAAGCGGAGAGTGCACGCCAGCCAGTACATAAGCGGCAGCGCGCAGGATTTTTTGAGTTTTTCTCCA-TCACCTCTCCTTATAG----------------------------------------------------------------------------------------------------------AGTCGCTTGAGTGTCGC-----------ATCTCCCACGGC-TATCAGGTGCTCGGAG--------AGGCGTAGAGCGACGTCAGTCTCCCTCCCCTCACCACGGACGGAGGCGCGTG-CAGTTGTTTCCC-ATGGTTCGGTCCAGG--TCCCCTGTCTTTCTTT------ACAGCGGAGGAAACGGAAGGTGCACGCTACATTTTGTCTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS TriAsa/1-227 DE SCGW01000301.1:14952-15178 MAG: Trichosporon asahii isolate N5_275_008G1 N5_275_008G1_scaffold_417, whole genome shotgun sequence
TriAsa/1-227                        -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTCGACTTTTTCTCCA-TCACCTCTCCTTATAG----------------------------------------------------------------------------------------------------------AGTCGCTTGTGTGTCGC----------TACATCCCACGGC-TATCAGGTGCTCGGAG--------AGGCGTAGAGCGACGTCAGTCTCCCTCCCCTCACCACGGACGGAGGCGCGTG-CAGTTGTTTCCC-ATGGTTCGGTCCAGG--TCCCCTGTGTTTCTT-------GCAGCGGAGGAAACGGAAGGTGCACGCTACATTTTGTCTTTTATCACCCTCG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS TriInk/1-374 DE JXYM01000002.1:c2168186-2167813 Trichosporon inkin strain JCM 9195 scaffold_0002, whole genome shotgun sequence
TriInk/1-374                        --------------------------------------------------------------------------------------------------------CGCTCGCTGGTGCGAGGCGTCCTCCGTCCAAACTGTGCGAGCCAGGGCTATATAACCGCCGCGGGAGCGCTGTTTTCCGCTTTCTCCATTCACCTCTCCTTATAG----------------------------------------------------------------------------------------------------------AGTCGCTTGAGTGCCAC------------GATCCCACGGC-TATCAGGTGCTCGGAG--------AGGCGTAGAGCGAGGTCAGTCCTCCGCCTGTGACCCAGGTCGAGGGCGCGTG-CAGCAGTCTCCC-ATGGTTCGGTCCAGG--CCCGCTGTGTTT--------GACAGCCGGCGGGGTTGGAGGGTGCACGCTACATTTCCGTCTCCCGACGCTTCTTCATCCGTACAGTACCTGTTGTAGCCTAGGATCTATGCGTGGCACAGGAAGCACTGAGCAGCGGTAGCGGGGATGCGCAG------------------------------------------------------------------------------------------------------------------
#=GS TriOvo/1-327 DE WEIQ01000017.1:c607414-607088 Trichosporon ovoides strain 2NF903A scaffold17-size799176, whole genome shotgun sequence
TriOvo/1-327                        --------------------------------------------------------------------------------------------------------CTCTCCTGGTGCGAGGTGAGCTGGCCCGCGAAACTCTGGCGGAGGGGTACAAGACCGCTGGTCCAGGTGATTTTTCGACTTTTCCTCATTCACCTCTCCTTATAG----------------------------------------------------------------------------------------------------------AGTCGCTTGAGTGCCAC------------CATCCCACGGC-TATCAGGTGCTCGGAG--------AGGCGTAGAGCGAGGTCAGTCCTCCGCCTGTGACCCAGGTCGAGGGCGCGTG-CAGCAGTCTCCC-ATGGTTCGGTCCGCA--CTCCCCACGATC---------ACACGTGGGGGAACCGGAGGGTGCACGCTACAACCAACACTTCCAAATTCCCTTCCACCATAGAACGATCTGATGAAAATCGCGATG----------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS VanFra/1-390 DE BEDY01000001.1:3497156-3497545 Vanrija fragicola DNA, scaffold: scaffold_1, strain: JCM 1530, whole genome shotgun sequence
VanFra/1-390                        -----------------------------------------------------------------------------------------------------------------------------------------CTCCGCCAACGAAACTGCTATAAAGTTGGGTCAGAACCCATTTCTACTTCTTCATCCTGCCCCTCCTTATAGGTACGTTTTTAACATTATTAGGTC--------------------------------TGTCTTGCACTGCTAACGTATCG------------------------CAGAGTCGCTTGAGTGCCGC---------ATATATTTCACGGC-TATCAGGTGCTCGGAG--------GCGCATAGAGCGACGTCCGTCTCCCGCCTT---CATAGGTCGGAGGTTCGTG-CAGCAGTCTTCC-ACGGTTCAGTCCCAG----CCCCGTTGCTATT-------ACAAACGGGGAACCGAAGGGTGTCCGATACATTTCATTCCTTGTAGCACTATGCCATGTTGTTTATATCCTGCTGTGCTTGCTGGGATTTTGCTCCCTTGTGCATGTCTGCAGGTCCTTGCTGCGACTGCCT------------------------------------------------------------------------------------------------------------------
#=GS CutOle/1-323 DE QKWL01000001.1:3447900-3448192 Cutaneotrichosporon oleaginosum strain ATCC 20508 ATCC20508_contig01, whole genome shotgun sequence
CutOle/1-323                        ----------------------------------------------------------------------------------------------------------------------------------TGCTTCCGCTCAGCTCTCCTCGGCGCTCCTTTTTAAGGCGGACAGAGCAATTCTTTCACTTCATCGCCTCTCCTTATAGGTAAGTTTGGAGAACCGGAAAAGCCGCTCTGGTGTC----------------GATCGTCGAGTTTTAACTGACAA--------------------------TACAGAGTCGCTTGAGTGTCGC-----------ATTCCCACGGCT--ATCAGGTGCTCGGAA--------AGGCGCAGAGCGTGGTCCGCCCCCCTCCCTACCC---GGTCGGGGGTACGAG-CAGCAGTCTTCC--AGGTTCGGTCCA----TTCCCAGCT----------GAGGTCAGCTGGGAGTTGAAGGGTGCTCGTCACATTCATCGCGTCGTGTTGTAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS TreMes/1-295 DE AFVY01000378.1:88300-88594 Tremella mesenterica DSM 1558 strain Fries TREMEscaffold_17_Cont378, whole genome shotgun sequence
TreMes/1-295                        -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCACCACCGCCTCTCCAACT-GGTCAGTATGACATTCCTCTTTCTCCTCCACTACTTTT-------ACTGAAGGTATTAGAGATTAGTAGCTTAGGAGGAAGAGAAGAAGTACCAAGCTAACGGTCAGAGTCGCTTGATCATCTC----------GATACCCACGACG--GTCAGGTGCTCGGAG--------AGGCGGAGAACGAGGTCCGGCCTTCCTCCTTTT----GGACGG-GG-TCGTG-TTGCTCTTTATA------------------TGTTCATCTTATCTT--------GGTGGTAGGGTGAGAAGGAGTGATACCACATGTCTATCTACTTGCCTGGAGTGTTTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS BulAlb/1-295 DE BCIX01000002.1:2251440-2251714 Bulleromyces albus DNA, scaffold: scaffold_1, strain: JCM 2954, whole genome shotgun sequence
BulAlb/1-295                        ---------------------------------------------------------------------------------------------------------------------------------------------------------------TCAATTCGCAACTCGCCTTTCTCTTCTTCTTCAACGCTCCACCTTAATAGGTAAGTCTGTCCTAAGTATCT---------------------------------ACGCAAGATCCGCGCTGACAAGA---------------------TTTGACAGAGTCGCTTGATTGTTCG---------ATACACACCACGAC-AATTAGGTGCTCGGAG--------GAGCGAAGAATAACGCAAGTCACCCTTCTGCTAT---GGACGGTGGTACGGT-CATGGGCTCAAAGGTCTTTACGGCCGGG--TCGACGGTGGTTC--------ACCCTCTGTCTT-CCGAGCGCAAGGCGTTACATATTCGAACTGGCCAGACGATGCAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS ApiBra/1-316 DE JAMALJ010000002.1:c933093-932778 Apiotrichum brassicae strain M2204 ctg_2, whole genome shotgun sequence
ApiBra/1-316                        ------------------------------------------------------------------------------------------------------------------------------------------GGAGGCTCTCGCGCTATAAAAACCGGACGAGGCCTCCGATTTCTCTTTTTCCTTGTCGCCCTCCCTTATAGGTAAGTCATCACCATGGGATATCCATTTCACCCAGCC---------------------TATACGAATACTGACATG------------------------TACCAGAGTCGCTTGATGGCTGC-----------TATCCCAACGGC-CCTCAGGTGCTCGGAG--------CGGCGCAGAGCGAGTTCCGCCCCACTCCTGTTGACCCGGGTTTGGGGTTCGTGCTGCTTTGCCCTCGATGGTTCGGTCCAAGCTCGCGCACTTTGCCC--------AGTGTGCGGGATCGAGGGGCGCACGTTACATTCCCGAATAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
//

• Image source 6.2:

# STOCKHOLM 1.0
#=GF RW van Nues, September 2023
#=GF https://coalispr.codeberg.page/paper
#=GS HACAcnag12692/1-210 DE ncrna 6:271007:271217:-1 AE017346.1:c271217-271008 Cryptococcus neoformans var. neoformans JEC21 chromosome 6 sequence71219-271008 Cryptococcus neoformans var. neoformans JEC21 chromosome 6 sequence
HACAcnag12692/1-210                -----------------------------------------------------------------------------------------------------------CTCCCCTCCATAGCCGA--------GTAAC-CCTC----------GTGCCCC---CTGCCTCTAGCTCTCATCTATT---GGCGGTACCCATTGGAGGGGTATACAAAAGACCATTGCAAACTAGCATGT------------------------------CTGGTTTGCAATCCTGACTTTGATA-TAAGCCGGAGGCTCATTTATGTCTC--------ATACTCTTTGAGTATGGG-----ATAGATTGGAGGGCCTTGACTCGGGTTTAGGACATCT-------------------
#=GS CNAG_12692-expressed/1-210 DE CP003826.1:1126749-1126958 Cryptococcus neoformans var. grubii H99 chromosome 7, complete sequence
CNAG_12692-expressed/1-210         -----------------------------------------------------------------------------------------------------------CTCCCCTCCATAGCCGA--------GTAAT-ACTC----------GTGCCCC---CTGCCTCTAGCTCTCATCTATT---GGCGGTACCCATTGGAGGGGTATACAAAAGACCATTGTAAGCTAGGATGC------------------------------CTGGTTTGCAATCCTGACTTTGATA-TAAGCCGGAGGCTCGTTTATGTCTC--------ATACTCTTTGAGTATGGG-----ATAGATTGGGGGGCCTTGACTCGGGTTTAGGACATCT-------------------
#=GS WM276/1-215 DE CP000291.1:1061093-1061307 Cryptococcus gattii WM276 chromosome F, complete sequence
WM276/1-215                        ----------------------------------------------------------------------------------------------------------GCACCCCTCCATAGCCGACGGA----GTAAT-CCTC----------GTGCCCC---CTGCCTCTAGCTTCCATCTATT---GGCGGTACCCATTGGAGGGGTATACGAAAGACCATTGCAAACTAGCATGT------------------------------CTGGTTTGCAATTCTGACTTTGATA-TAAGCCGGAGGCTCGTTTATGTCTC--------ATACTCTTTGGGTATGCG-----ATAGATTGAGGAGCCTTGACTCGGGTTTAGGACATCT-------------------
#=GS R265/1-216 DE CP025763.1:1065112-1065327 Cryptococcus gattii VGII R265 chromosome 5, complete sequence
R265/1-216                         ----------------------------------------------------------------------------------------------------------CTCCCCCTCCATAGCCGACGGA----GTAAT-CCTC----------GTGCCCCC--CTGCCTCTAGCTTCCATCTATT---GGCGGTACCCATTGGAGGGGTATACGAAAGACCATTGCAAACTAGCATGT------------------------------CTGGTTTGCAATTCTGACTTTGATA-TAAGCCGGAGGCTCGTTTATGTCTC--------ATACTCTTTGGGTATGCG-----ATAGATTGAGGAGCCTTGACTCGGGTTTAGGACATCT-------------------
#=GS CryWin/1-212 DE CP034264.1:c283766-283555 Cryptococcus wingfieldii strain CBS7118 chromosome 4, complete sequence
CryWin/1-212                       -----------------------------------------------------------------------------------------------------------TCTCCCTCCATAGCCGA--------GTAAC-CCTC----------GTGCCC----CTGCTTCTAGCACCC-CCTAGT---AGCGGTACCCATTGGAGGGGCATACGAAAGACCTTGTACCTACCAGCCTCTGTG--------------------------CCGGTGTACTCGCCTGACTTTGATA-TAAGCCGGAGGCTACCTCATATCCC--------GTACTCTTTGAGTGCGTG-----ATACATTGGGAAGCCTTGACTCGGGTCCAGAACATCT-------------------
#=GS CryFlo/1-212 DE RRZH01000006.1:c247706-247495 Cryptococcus floricola strain DSM 27421 chromosome 6, whole genome shotgun sequence
CryFlo/1-212                       -----------------------------------------------------------------------------------------------------------TCCCCCTCCATAGCCGA--------GTAAC-CCTC----------GTGCCC----CTGCTTCTAGCACCC-CCTAGT---AGCGGTACCCATTGGAGGGGCATACGAAAGACCTTGTACCTACCGGCCTCTGTG--------------------------CCGGTGTACTTGCCTGACTTTGATA-TAAGCCGGAGGCTACCTCATATCCC--------GTACTCTTTGAGTGCGTG-----ATACATTGGGAAGCCTTGACTCGGGTCCAGAACATCT-------------------
#=GS CryAmy/1-213 DE MEKH01000004.1:1327743-1327955 Cryptococcus amylolentus CBS 6273 supercont2.4, whole genome shotgun sequence
CryAmy/1-213                       ----------------------------------------------------------------------------------------------------------TTCCCCCTCCATAGCCGA--------GTAAC-CCTC----------GTGCCC----CTGCTTCTAGCACCC-CCTAGT---AGCGGTACCCATTGGAGGGGCATACGAAAGATCTTGTACCTACCAGCCTTTGTG--------------------------CCGGTGTACTCGCCTGACTTTGATA-TAAGCCGGAGGCTACCTCATATCCC--------GTACTCTTTGAGTGCGTG-----ATACATTGGGAAGCCTTGACTCGGGTCCAGAACATCT-------------------
#=GS CryVH5/1-212 DE JANBXI010000068.1:c37019-36808 Cryptococcus sp. VH57_BW 68, whole genome shotgun sequence
CryVH5/1-212                       ----------------------------------------------------------------------------------------------------------TCCCCCCTCCACAGCCGA--------GCAAC-CCTC----------GTGCCC----CCGCCGCTAGCACCCCCTGGC----AGCGGTACCCACTGGAGGGGTACACCAACCACCAGGCGCATCAGCTCTATGC----------------------------AGCGTGCGTCCTTCTGACTTTGATA-TAAGCCGGAGGTCCCTTCATGTCCT--------GTACTCTTTGGGTGCGGG-----GCACATTGGGGGGCCTTGACTCGGGTCCAGCACATTCT------------------
#=GS TriInk/1-205 DE QAYW01011846.1:91-295 Trichosporon inkin strain C-2155 NODE_11862_length_517_cov_2.48636_ID_252983, whole genome shotgun sequence
TriInk/1-205                       -------------------------------------------------------------------------------------------------------CGACCACCCCCGGCTTGCCGTCACCTCTGTCTTGAAAGAACAGGAACAAGTGTCGGCCCCTGCTCATCACTCCCATTGATTT---GCGGTACCCA--GTTGGGGGTCAGAACGA-----------------------------------------------------------TATCCAGACCTTGATA-TAAGCCGGAGGCTCTCTATGCGCTT--------CTCACTACGTGAGCAGTTG-----CAAATTCGAGAGCCTTGACTCGGGTTCAGGACATCT-------------------
#=GS TriCor/1-229 DE JXYL01000021.1:c57128-56900 Trichosporon coremiiforme strain JCM 2938 scaffold_0021, whole genome shotgun sequence
TriCor/1-229                       --------------------------------------------------------------------------------CCCTTCCGCTTCCACTATTTTCGACACCCCCCCCAGCCTGCCGGCACCTCT-GCCT--CCAAGAGAGAACAAGTGCTGGCCCCTGCTCATCACTCCCATTGATTT---GCGGTACCCG--GTCGGGGGGGAGAGCGA-----------------------------------------------------------TATCCAGACCTTGATA-TAAGCCGGAGGCTCTCTATGCGCTT--------CACACTACGTGCGGAGTTG-----CAAATTCGAGAGCCTTGACTCGGGTTCAGGACATCCTTGT---------------
#=GS TriOvo/1-305 DE WEIQ01000045.1:c128666-128362 Trichosporon ovoides strain 2NF903A scaffold45-size260668, whole genome shotgun sequence
TriOvo/1-305                       -----------CATTGCGCTCATCGATTACTAAGCCACACACTGATATTGACGCAAAGTCCCGCTTTTCCCATTCACAA-CCCTTCCACCCCGCTTTCTCCTTCAAAACCCCCCAACCCGCTGTTCACCTCTGTCTT-CAAAGAAAGAAAACGTGTCGGCCCCTGCTCATCACTCCCATTGATTT---GCGGTACCCG--GTTGGGGGGAAGAACGA-----------------------------------------------------------CATCCAGACCTTGATA-TAAGCCGGAGGCTCTCTATGCGCTT---------CCCACTACGTGGGCGGTTG----CAGATTCGAAAGCCTTGACTCGGGTTCAGGACATCTCAAGCTCATG---------
#=GS TriGue/1-295 DE BCJX01000018.1:c34504-34210 Trichosporon guehoae DNA, scaffold: scaffold_17, strain: JCM 10690, whole genome shotgun sequence
TriGue/1-295                       TCTCATGTCCTGTCCTCCTCCTCTCCTCCTTCCCTCCTTCTCTCCTCCTTCCCTCCTCTCCCCC---CCTCCCACCCCTTTCTTTCCCAACATCCCTTCCCTCCCTCCCAACCCCCCGACCCG-------CTGGGC--GCTC--------GTCGCCCGGCCCCTGC----CAGCTCT--CTAGCT--CGCGGTACCCG--GCCGGGGGGAAGACAAACCCACAA----------------------------------------------------AACCAAGACCTTGATAATAAGCCGGAGGTCCCCTATACCGCG----------TCCTCGTTGGGGGCGGGG----TAGATTCGGGGGCCTTGACTCGGGTGCTGGACATTTATACC--------------
#=GS TriAsa/1-280 DE SCGW01000038.1:45406-45685 MAG: Trichosporon asahii isolate N5_275_008G1 N5_275_008G1_scaffold_73, whole genome shotgun sequence
TriAsa/1-280                       ------------------------------AATGAAAGTACTGACGACTGTCTTTCCATCTGCCTACCACTGTTTCCTTCATCCACGCCTTCGCCCTCCACCTCGACACCCCCTGGCCCGCCGGCACCT-CTGCCT--CCAAGAGAGAACAAGTGCTGGCCCCTGCTCATCACTCCCATTGATTT---GCGGTACCCG--GTTGGGGGGAAGAGCGA-----------------------------------------------------------TATCCAGACCTTGATA-TAAGCCGGAGGCTCCCTATGCGCTT---------CACACTACGTGTGCAGTTG----CAAATTCGGGAGCCTTGACTCGGGTTCAGGACATCCCTTCT--------------
#=GS KwoSha/1-216 DE NQVO01000034.1:c207647-207432 Kwoniella shandongensis strain CBS 12478 scaffold00034, whole genome shotgun sequence
KwoSha/1-216                       -----------------------------------------------------------------------------------------------------------TCCCCCTCCAGCGCCGAGC------GTAAAAACTC----------GTGCCC----CTGCTTTCTTCCCACTTTATAAGTTAGCGGTAACACCTGGAGGGGTATACGAATGGTCTTTTGTTGTAAATCA--------------------------------CAAATGTGCCAATTTGACTTTGATA-TAAGCCGGAGATCTTTGTGATGTCG--------ATTCACTCTTTGAGGGGTTG---ATAAATGGGGAGATCTTGACTCGGGTTCAGGACATGCT------------------
#=GS KwoMan/1-220 DE ASQF01000004.1:1472937-1473156 Kwoniella mangroviensis CBS 8886 cont1.4, whole genome shotgun sequence
KwoMan/1-220                       ----------------------------------------------------------------------------------------------------------CAACCCCTCCATAGCCGA--------GTCTACAATGAC--------TTGCGCCCC-CTGCTCTTACCTCCCATGTATG---AGCGGTACCCATTGGAGGGGTATAATAATACTC-----------------------------------------------TCGTAGAGTTTAACTGACTTTGATA-TAAGCCGGAGGTATTGATTTACATACAAGACGACTTTTCTGTTCTTTGAATGGAAGGTTGATGAGATTACCTTGACTCGGGTTCAGGACATACCATACTTG-----------
#=GS KwoDej/1-268 DE ASCJ01000059.1:200220-200487 Kwoniella dejecticola CBS 10117 cont1.59, whole genome shotgun sequence
KwoDej/1-268                       -----------------------------------------------------------------------------------------CCCAATCTATCCTCCCGCCACCCCTCCATAGCCGATCCCT-CTGCGGA---TC----------GCGCCCC---CTGCTCTTACGTCCCATGTATA---AGCGGTACCCATTGGAGGGGTATATCGACCCCACTTCCCTCGTCCGATCATTCTCATGAACTGTGCAGG--------TGATCAGAGCGGAAGGCTGACTTTGATA-TAAGCCGGAGGTTTCGATGTGACTC------CTCTTATCCTTTGGATGGGGG----AGGTATGAAGATACCTTGACTCGGGTTCAGGACATCTCGTACCGTGT---------
#=GS KwoBes/1-229 DE ASCK01000001.1:211330-211558 Kwoniella bestiolae CBS 10118 cont1.1, whole genome shotgun sequence
KwoBes/1-229                       --------------------------------------------------------------------------------------------CAATCCTCCCCCCACAACCCCTCCATAGCGCGGTTCCCTCTTGACTTATATCAAGTTCGAACCCCGCCCCCTGCTCTTACCTCCCATGTATA---AGCGGTACCCATTGGAGGGGAATAACAAACAAAA-------------------------------------------------------CACACTGACTTTGATA-TAAGCCGGAGGGATCGATATCCCCT---------TGATCCTTTGGATGAGGGG----ATTATGAGGTTACCTTGACTCGGGTTCAGGACATCTATATTTG------------
#=GS CryFla/1-284 DE CAUG01000242.1:96406-96689 Cryptococcus flavescens NRRL Y-50378 WGS project CAUG00000000 data, contig NODE_338_length_195656_cov_46_022861, whole genome shotgun sequence
CryFla/1-284                       --------------------------------------------GCCGATACTCATGTTCGACCCCTGCACCTGCCCCCTCCCGCTCACACCCCGCACCTATCTTGTTCCCCCTCCGCAGCCGTGCTCTT--GTAG---CTC----------GTGCCC----CTGCCTATCTTCTCTCGTAGAAT--GGCGGTACCC-GCGGAGGGAAAGATCAATGTTTATA-------CAATTTGATTC--------------------------AAATATTTTCTACCAGACTTTGATA-TAAGCCGGAGGTGCTCCGTTTTCC--------CATTTCCTTTGTAAGGGTGGG---AAGGGTTGGAGTGTCTTGACTCGGGTTCTGGACATTCTTCCATACG----------
#=GS PapTer/1-220 DE JAHXHD010001060.1:c23366-23147 Papiliotrema terrestris strain LS28 scaffold-1059, whole genome shotgun sequence
PapTer/1-220                       -------------------------------------------------------------------------------------------------------CCTGTCCCCCTCCGCAGCCGTGCTCTT--GTAG---CTC----------GTGCCC----CTGCCTATCTTCTCAC-GTAGATT-GGCGGTACCCG-CGGAGGG--AAAGATCAACACAATATACAATATGAT--------------------------------TCAAAACAATTACCAGACTTTGATA-TAAGCCGGAGGTGCTCCGTTTTCC--------CATTTCCTTGGCAAGGGTGGG---AAGGGTTGGAGTGTCTTGACTCGGGTTCTGGACATCTTTTCA--------------
#=GS CryGC4_incomplete/1-164 DE JALPCA010001043.1:c4562-4399 Cryptococcus sp. GC_Crypt_4 iso00_46_1079, whole genome shotgun sequence
CryGC4_incomplete/1-164            ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCATAGAAA----GGAGGTACTC---GGTGGGGGAAAGAGAAATACCTATAACAATTTAAAATACA---------------------------ATTTTCAACTTGCCTGACTTTGATA-TAAGCCGGAGGTGCTCTGTAGTTC--------CATTTCCTCTTTGAGGGTGGA---ATCGATTGGGGCTTCTTGACTCGGGTTCAGGACAT---------------------
#=GS NaeEnc/1-301 DE MCFC01000007.1:c275383-275083 Naematelia encephala strain 68-887.2 BCR39scaffold_7, whole genome shotgun sequence
NaeEnc/1-301                       ------------------------------------------------------CCCGAACTTCCCCTACCCAACCTTCCTTCTCTTCCTAAACAATCATCCTACCCCATCCAACCGCTCCTCCGTTACTGGGTACAAACCAT---------GTCCCAGCC-CTGTCTTTCTCCTCAATAGAA---GGACGGTACATATCGGAGGCACAGACCAAATACAAAAATGTTCTTAATTGCTCTCTATAACGAGGCAA-------------GAAAAGACTTTTGCTGACCTTGATA-TAAGCCGGAGACTACTTTTATTCGT-------CATTTCTTCGATGAGGGTGAT---GAGCGTGAGGTTGTCTTGACTCGGGCTCAGTACATCTTCTATC-------------
#=GS PapLau/1-297 DE JAAZPX010000035.1:10102-10398 Papiliotrema laurentii strain IF7SW-F4 scaffold64_cov208, whole genome shotgun sequence
PapLau/1-297                       ---------------------------CCCTGGCCGGGGCGACGATGTCGAATCGGCCCAAAGATATCTGACCCACACTAACCTACCTCTCCCCCTCCCCTCTCTCATCCTCCCCCGCGGCCGT--------GCTTACGCTC----------GTGCTC----CTGCTTGACTCTCCCATAGTCT---GGCGGTACAAG-CGGGGGAACAGAACAAGGCAAAACTACTTTTTGACAATAA----------------------------TACAAAACGCCATATGACCTTGATA-TAAGCCGGAGGATATCCGTCTTTT--------CATTTCCTCTACGAGGGTGGA---AATAGTTGGAGTTCCTTGACTCGGGTCCAGCACATTTAACA---------------
#=GS CrySki/1-252 DE BCHT01000002.1:c1462441-1462190 Cryptococcus skinneri DNA, scaffold: scaffold_1, strain: JCM 9039, whole genome shotgun sequence
CrySki/1-252                       ---------------------------------------------------------------------------------------------CTGCCTTCCATCACCCCTCCCCCACAGCTGC--------GATAA-CCTC----------CAGCC-----CTGCCTCCAGCCTCTCGCGGG----GGCGGTAAAACGTGGTGGGATATATCATCCGTCTCTCTCCTCCTCTGTTCCCTCGGGAACAGTGAGAAGAG--------TGGAGACATTATACCTGACTTTGATATTAAGCCGGAGGTCCTTGGGATACCT---------GATTTCCTCTGAGAGGGTCGTGGTAGATTGGGGGACCTTGACTCGGGTTCAGGACATGCTTGT---------------
#=GS BulALb/1-230 DE CAMYTR010000005.1:168160-168392 Bullera alba genome assembly, contig: jcf7180000012097, whole genome shotgun sequence
BulALb/1-230                       ------------------------------------------------------------------------------------------------------------CTCCCTCACCAGCCGAGTCTCTTCGGAGA-TCTC----------GTGCAC---CCTGCCTGTTCTCTCCCATAGACT--GGCGGTACCC---GGTGACCTTTGGGAAAGAACAAAACCAGTAATCATTCAATACAAT----------------------TTTCAATCATTACCTGACTTTGATA-TAAGCCGGAGGGTTCGCCGTCATCCT-------ACTTCCTCTACGAGGGTGGG---ATAAGTTGGGATCTCTTGACTCGGGTTCAGGACATCTAGAT---------------
#=GS CryGC7/1-260 DE JALPBX010000024.1:111970-112229 Cryptococcus sp. GC_Crypt_7 iso00_79_24, whole genome shotgun sequence
CryGC7/1-260                       -----------------------------------------------------------------------------------------------CCGGCGCGCAAGCCTCTGGCCATAGCTACGCT---TTGGCTACGCTT----------GCGCCC----CTGCCCTCTTCTACATAAGA----GGGCGGTACCACCCGGAGGGGCATAATGATC-TTTTT---CTGCTTTTGGCGAAAA-ACTCGTTTCAAAC-----------TATGCGACGAGCACTGACCTTGATA-TAAGCCGGAGACGCACTATATCCCT---------CTTACTCTTTGAGTGAGGG---ATAGATGAGGGCTTCTTGACTCGGGTCCAGCACATCCACCTATCTCACTATTTGTA
#=GS CryGC3/1-301 DE JALPCB010000289.1:c2358-2058 Cryptococcus sp. GC_Crypt_3 iso00_45_289, whole genome shotgun sequence
CryGC3/1-301                       --------------------------------------------TACTGATCCATCCTCACCCTCCCCCGCTACCCCGCTACCTACACTTCCCCTCCGGCGCGCAAGCCTCTGGCCACAGCTCAGCTGC---GGTCAAGCCT----------GCGCCC----CTGCCCTCTTCTACCTACATAAGAGGGCGGTACCTCCCGGAGGGGCATAATGACCTTTTTT---CGGTTAAACGGAAAAA-ACTCGTTTCAGAC-----------TATGCTACGAGTACTGACCTTGATA-TAAGCCGGAGACGCACTATATCCCT---------CTTACTCTTTGAGTGAGGG---ATACATGAGGGCTTCTTGACTCGGGTCCAGCACATCTCCTC---------------
#=GS CryGC5_incomplete/1-205 DE JALPBZ010000095.1:c76844-76640 Cryptococcus sp. GC_Crypt_5 iso00_58_95, whole genome shotgun sequence
CryGC5_incomplete/1-205            ------------------------------------------------------------------------------------------------------------------------------------------------------------CC----CTGCCCTCTTCTACCCACATAAGAGGGCGGTACCTCCCGGAGGGGCATAATGA-CTTTTTTTTTCGGTGAAACGAAAAAAGACTCGTTTCAGAC-----------TATGCTACGAGTACTGACCTTGATA-TAAGCCGGAGACGCACTATATCCCT---------CTTACTCTTTGAGTGAGGG---ATACATGAGGGCTTCTTGACTCGGGTCCAGCACATCTCCTC---------------
#=GS VanFra/1-301 DE BEDY01000001.1:c3443852-3443552 Vanrija fragicola DNA, scaffold: scaffold_1, strain: JCM 1530, whole genome shotgun sequence
VanFra/1-301                       ----------------------------------------------ATTCTATATCATCGAGCTCCCCTGCCTATCATATTCATTCATCCACTTTCGCCCATCACTTGCCCCCGGACCTGCTG--GTCGCTTGCAGT-TCTCTGCAAAT---GCGTCAGCCCCTGCCAGCTTCCTAATA-----GCGCGCGGTACCCGGTCTGGGGGCAGAAAAACCGCTCCGCACCGAAATGATACATTACTTT----------------------TGCGGAACGCGGCCTTACCTTGATA-TAAGCCGGAAGCCCTCTCATGCTTC----------TCTCCCGTTGGGTGGGCA---GCAGATTGGTGGGCTTTGACTCGGGTTTAGTACATTTCCCATCCT-----------
#=GS CryGC2/1-295 DE  JALPCC010000085.1:c59646-59352 Cryptococcus sp. GC_Crypt_2 iso00_70_85, whole genome shotgun sequence
CryGC2/1-295                       ------------------------------------------------------------------AATCTAAATATCGATAACCCCTCCCCCTTCCACCCATTCACACATCCCTACCAGCCGAGAGTCAACAACGATTCTC----------GTGCA-----CTGCCCTTCC-TATCCTAT-GGGAGAGCGGTAACAGGAAAGGAAAGATCAGCCCATCCTCCAATCTTTTACGAACTAGGAGATTGGATGGATTCATTTGTTCTACGAATGAAAAAGGCCAAACTTTGATA-TAAGCCGGAGGTCTCCCGTATTCTG-------ATTTCCTGAATTGGGTTGGA-----AGAGTTGGGGGATCTTGACTCGGGTTTTGGACATACTCGAT--------------
//

• Image source 6.3:

# STOCKHOLM 1.0
#=GF RW van Nues, September 2023
#=GF https://coalispr.codeberg.page/paper
#=GS CNAG_12684/1-168 DE exonic HACAsnoRNA 7: [988,529 - 988,697] (+168)
CNAG_12684/1-168                -------------------------------------------------------------------------------ATCGCTTTCAGTCCCCCGTCACAGCT---TGGTTCAACCTTTTGTTAACCC-GTGCTGAT--GTCGGGGTTATGG------CCTTTACGGTC------CAAAGCGAAGAGTGAA---------------GTCTTGACTGGGCATGTCCTCGTTCGTTTC---------ACTTCCACTGAATGTAGGACTAATCAGTCTTGTCGACATTTC---------------------------------------------------------------------------------------------------------------------
#=GS pre-HACAcnag12684/1-257 DE pre-HACAsnoRNA-259nt-in-CNF01490 ncrna 6:436788:437045:1
pre-HACAcnag12684/1-257         -------------------------------------------------------------------------------ATCGCTTTCAGTCCCCCGTCACAGCT---TGGTTCAACCTTTCGTTAACCC-GTGCTGAT--GTCGGGGTTATGG------CCTTTATGGTC------CAAAGCGAAGAGTGAA---------------GTCTTGACTGGGCATGTCCTCGTTCGTTTT---------ACTTCCACTGAATGTGGGACTAATCAGTCTTGTCGACACCTCTTGCTATGTATGCATCTACTCTTATTTCGTGCTCAAATTACCTTCTATTTATTGTCAAAACGCGGGGATGATGCAACAACAATTTGTCA----------------------------
#=GS HACAcnag12684/1-167 DE HACAsnoRNA-167nt-in-CNF01490 ncrna 6:436788:436955:1
HACAcnag12684/1-167             -------------------------------------------------------------------------------ATCGCTTTCAGTCCCCCGTCACAGCT---TGGTTCAACCTTTCGTTAACCC-GTGCTGAT--GTCGGGGTTATGG------CCTTTATGGTC------CAAAGCGAAGAGTGAA---------------GTCTTGACTGGGCATGTCCTCGTTCGTTTT---------ACTTCCACTGAATGTGGGACTAATCAGTCTTGTCGACACCT----------------------------------------------------------------------------------------------------------------------
#=GS CryWin/1-194 DE AWGH01000003.1:c435593-435400 Cryptococcus wingfieldii CBS 7118 supercont1.3, whole genome shotgun sequence
CryWin/1-194                    -------------------------------------------------------------------------------CACGCTTTCAGTCCCCCTTCATTGCT---CGGTTCGACCTTTAGTCAGCC-AGTGCTACC--GTCGGGGTTTTATAAG-ACCACTTTTGGTCTTG---CAAAGCGAAGAAAAAA---------------GTCAAAACTGGGCATGTCCTCGTTCGTTTAT---------TCTCCACTGAATGTGGGACTAATCAGTTTTGTCGACATTATTATATAATACCACACACC---------------------------------------------------------------------------------------------------
#=GS CryFlo/1-198 DE RRZH01000006.1:c505467-505270 Cryptococcus floricola strain DSM 27421 chromosome 6, whole genome shotgun sequence
CryFlo/1-198                    -------------------------------------------------------------------------------CACGCTTTCAGTCCCCCTTCGTTGCT---CGGTTCGACCTTTAGTCAGCC-AGTGCTACC--GTCGGGGTTTTATAAG-ACCACTTTTGGTTTTG---CAAAGCGAAGAAAAAA---------------GTCAAAACTGGGCATGTCCTCGTTCGTTTAT---------TCTCCACTGAATGTGGGACTAATCAGTTTTGTCGACATTACTATATAATACCACACCTTTTTG-----------------------------------------------------------------------------------------------
#=GS CryAmy/1-181 DE MEKH01000004.1:1067915-1068095 Cryptococcus amylolentus CBS 6273 supercont2.4, whole genome shotgun sequence
CryAmy/1-181                    ---------------------------------------------------------------------------TACACACGCTTTCAGTCCCCTTTCATTGCT---CGGTTCGACCTTCAGTCAGCC-AGTGCTACC--GTCGGGGTTTTATAAG-ACCACTTTTGGTCTTG---CAAAGCGAAGATAAAA---------------GTCAAAACTGGGCATGTCCTCGTTCGTTTAT---------TCTCCACTGAATGTGGGACTAATCAGTTTTGTCGACATTACT--------------------------------------------------------------------------------------------------------------------
#=GS CRyVH5/1-179 DE JANBXI010000073.1:41580-41758 Cryptococcus sp. VH57_BW 73, whole genome shotgun sequence
CRyVH5/1-179                    ----------------------------------------------------------------------------CACACCGCTTTCAGTCCCCCGACACAGCT---CGGCACGACCTTTTGTCAGCCT-GTGCTG--TATTCGGGGTTAGGG---TACTTTCCAAGGTCC----CAAAAGCGCATAGAAAA---------------GTCAAGACTGGGCATGTCCTCGTTCGATAT-------ATGCTTCCACTGAATGTGGGACTAATCAGCCTTGTCGACATACCA--------------------------------------------------------------------------------------------------------------------
#=GS CrySki/1-187 DE BCHT01000001.1:239088-239274 Cryptococcus skinneri DNA, scaffold: scaffold_0, strain: JCM 9039, whole genome shotgun sequence
CrySki/1-187                    -------------------------------------------------------------------------------CCCGCTTTCAGTCCCCCGTCCCAGCTCC-CGGTAAGACCTTTTGTCGAACC-ATGCTGGCCTGTCGGGGTTATG-----ATCATTATCGGT------CAAAAGCGTAGATAGATCTCAAGGGA-----CGTCTAGACTGGGCATGTCTCTTCTTGTTAT-------ATGC-TCCACTTAGCGAGGGACTAATCAGTCTGGTCGACATCTGAGC------------------------------------------------------------------------------------------------------------------
#=GS KwoSha/1-183 DE NQVO01000012.1:c138327-138145 Kwoniella shandongensis strain CBS 12478 scaffold00012, whole genome shotgun sequence
KwoSha/1-183                    -------------------------------------------------------------------------------TACGCTTTCAGTCCCCCATCTTGGCT---CGGTACGACCTTTTGTCAGCC-AGTGCTACGA--ATGGGGTTTTATAG---TACTTTTCAGTACTTT---AAAGCGAAGATAGAA---------------GACAAGACTGGGCATGTCCTCGTTCGTCTTTCTGAATTTACCCCCACTGAATGTGGGACTAATCAGTCTTGTCGACATTAC---------------------------------------------------------------------------------------------------------------------
#=GS NaeEnc/1-184 DE MCFC01000007.1:c90856-90613 Naematelia encephala strain 68-887.2 BCR39scaffold_7, whole genome shotgun sequence
NaeEnc/1-184                    -----------------------------------------------------------------------------AACCCGCTTATAGTCACCCATCCTAGCT----C-GCAGACATTCAGTCTTG-C-ATGCTAGAT--ATGGGCATTTACCGG----CCAATAGGTCGTTG-AAAAAGCGTAGAAGAACCTTTGA-------GCGTCTTGACTGGGCATGTCTTCGTTCGAT---------ATGCCTCTACTGGATGAGAGACTAATCAGTCTTGTCGACATTTATA-------------------------------------------------------------------------------------------------------------------
#=GS CryFla/1-188 DE CAUG01000242.1:143100-143287 Cryptococcus flavescens NRRL Y-50378 WGS project CAUG00000000 data, contig NODE_338_length_195656_cov_46_022861, whole genome shotgun sequence
CryFla/1-188                    -----------------------------------------------------------------------TCCCCCTCACCGCTTTCAGTCCCCCACC-CAGT----AAGAAGGACCTTTTGTCTCTTCCATATTGGTG--ATGAGGTTTATG-----------CTGTCT-CAGCACAAAGCGAAGATCAACCATATAT-----GGCGTCTTGACTGGGCATGTCTCTGTTCGTTT--------ATGCTTCCACTGGACAAGGGACTAATCAGTCTTGTCGATACTTTAG-------------------------------------------------------------------------------------------------------------------
#=GS PapTer/1-193 DE JAHXHD010000525.1:c12447-12230 Papiliotrema terrestris strain LS28 scaffold-524, whole genome shotgun sequence
PapTer/1-193                    -------------------------------------------------------------------------------CCCGCTTTCAGTCCCTCA-CCCAGT----AAGAAGGACCTTTTGTCCCTTCCATATTGGTG--ATGAGGTTTTTG-----------CTGTTT-CAGCACAAAGCGAAGATCAATCATATAT-----GGCGTCTTGACTGGGCATGTCTCTGTTCGTTTTT-------TGCTTCCACTGGACAAGGGACTAATCAGTCTTGTCGATATTTGTATGTACATCGCGA-------------------------------------------------------------------------------------------------------
#=GS PapLau/1-277 DE JAAZPX010000035.1:60106-60382 Papiliotrema laurentii strain IF7SW-F4 scaffold64_cov208, whole genome shotgun sequence
PapLau/1-277                    -----------------------------------------------------------CCCTCTTATTCCATATCTCCCACGCTTTCAGTCCCCCGGC-TGGC----AAGGAGGGCCTTTTGTCCGACC-ATGTC-AT--CCCCGGGTTATTT--AGAGTCTACAAGGCT-----CAAAAGCGAAGAAAGACCTTGCAAAA---GGCGTCTTGACTGGGCATGTCTCTGTTCGTTA--------ATGTCTCCACTGGACATGGGACTAATCAGTCTTGTCGATATCTCTTTCATAGTCTAGCATTTTTGCTCCATGCATCATGTCGCGGTCACCATCCACTTCGCAGGTGTCATATTGCTCG-------------------------------------------
#=GS KwoDej/1-189 DE ASCJ01000063.1:c23069-22881 Kwoniella dejecticola CBS 10117 cont1.63, whole genome shotgun sequence
KwoDej/1-189                    -----------------------------------------------------------------------GCAATGAGCCCGCTTTCAGTCCCCCATCCGGAT---AAGGT-TGACCTTTTGTCGACTC-ATATTTGAA-GGTGGGGTTAATCTTTTACATACGTGTGAA-TAGATAAAAGCGAAGAAAGAA---------------GTCTTGACTGGGCATGTCCTCCTTCGTTT--------ACGCTTCCACTGAATGTGGGACTAATCAGTCTTGTCGACATTATA--------------------------------------------------------------------------------------------------------------------
#=GS KwoMan/1-193 DE ASQE01000043.1:c25865-25663 Kwoniella mangroviensis CBS 8507 cont2.105, whole genome shotgun sequence
KwoMan/1-193                    -----------------------------------------------------------------------------AGTACGCTTTCAGTCCCTCATCTGAGT---AAGGT-CAACCTTTTGTTGTACCCATATTC-AA-GGTGCGGTTATTATGTT--ACCAATACAT-----AACAAAGCGAAGAAAAAATCAATC--------CGTCTTGACTGGGCATGTCCTCGTTCGTTTCCATT----TCACCCCACTGAATGTGGGACTAATCAGTCTTGTCGACATACCATATTG---------------------------------------------------------------------------------------------------------------
#=GS KwoBes/1-193 DE ASCK01000001.1:c654247-654055 Kwoniella bestiolae CBS 10118 cont1.1, whole genome shotgun sequence
KwoBes/1-193                    --------------------------------------------------------------GTCATTCAATACTCATACCCGCTTTCAGTCCCTCATCTGAAT---AAGGT-CAACCTTTTGTTGTACCCATATTC-AA-GGTGAGGTTATATGTCTT---CAAAACAT------ACAAAGCGAAGAAAGAA---------------GTCTTGACTGGGCATGTCCTCGTTCGTTTAT------ATCACCCCACTGAATGTGGGACTAATCAGTCTTGTCGACATTCCGT-------------------------------------------------------------------------------------------------------------------
#=GS TriGue/1-179 DE BCJX01000009.1:c1188579-1188401 Trichosporon guehoae DNA, scaffold: scaffold_8, strain: JCM 10690, whole genome shotgun sequence
TriGue/1-179                    ---------------------------------------------------------------------------TACCCACGCTTTCAGTCCCCCGTCACAGC-----GGCAAGACCTTTTGTTGAGCT-ATGCTGTTG--GTGGGGATT-CCAGCACTAC--TGTGCTGG------CAAGCGGAGAAAAACACA-----------CGTCTTGACTGGGCATGTCCTCGCTCGTTT--------ATGCCTCCACTGATTG-GGGACTAATCAGTCTTGTCGACACTTGTA-------------------------------------------------------------------------------------------------------------------
#=GS ApiBra/1-192 DE JAMALJ010000002.1:1036644-1036835 Apiotrichum brassicae strain M2204 ctg_2, whole genome shotgun sequence
ApiBra/1-192                    ---------------------------------------------------------------------------CTCCCACGCTTTCAGTCCCCCGTCAGAGC-----GGTAAGACCTTTTGTCGAGC-AGTGCTTTTG--GTGGGGTTTCCAACATTTCC-ATGTGTTGG------CAAGCGGAGAAGGACCACCCTTGCGGGGGCGTCTTGACTGGGCATGTCCTCACTCGTTTT--------TGCTTCTACTGAGTGTGGGACTAATCAGTCTTGTCGACATTTCT--------------------------------------------------------------------------------------------------------------------
#=GS CutDas/1-179 DE BEDX01000004.1:1797022-1797200 Cutaneotrichosporon daszewskae DNA, scaffold: scaffold_4, strain: JCM_11166, whole genome shotgun sequence
CutDas/1-179                    -------------------------------------------------------------------------CCTACCCACGCTTTCAGTCCCCCGTCACAGC-----GGCAAGGCCTTTTGTCGAGCT-ATGCTGTTG--GTGGGGATCCAACA-------CAATGTT------GGCAAGCGAAGATCCACTATTA--------GCGTCTTGACTGGGCATGTCCTCGCTCGTAAT--------TGCCTCCACTGCGTG-GGGACTAATCAGTCTTGTCGACATATGT--------------------------------------------------------------------------------------------------------------------
#=GS CutOle/1-264 DE QKWL01000001.1:2530415-2530678 Cutaneotrichosporon oleaginosum strain ATCC 20508 ATCC20508_contig01, whole genome shotgun sequence
CutOle/1-264                    -----------------------------------------------------------------------TGCCTCCCCACGCTCTCAGTCCCCCGTCACAGC-----GGTAAGACCTTTCGTCGAGCC-ATGCTGTTG--GTGGGGATATCCGG----CCTAAGTGGTTGG----ACGAGCGAAGAAGAA---------------TTATTCAACTGGGCATGTCATCG--CGTCTAT------ACGCATCCACTGCGCG-GAGACTAATCAGTTGAACCGACATTCTACTCTAGTATGAAATGCATCTCATCCTCTCGAGTTTTGGCAGCACGCCTTGATTTCTGTATCTCTGTCTGTCGATGCGTCGAACAA-------------------------------
#=GS CryGC2/1-309 DE JALPCC010000089.1:c12471-12163 Cryptococcus sp. GC_Crypt_2 iso00_70_89, whole genome shotgun sequence
CryGC2/1-309                    --------------------------------------------------------------CCCTCCTTCCCCCCAAAACCGCTTCCAGTCCCTCA-CCATGC---GAGAAACGACTTTTTCGTATCT-AATGCTACG--GATGAGGTTGAT-------CTTTATAG------ATCAGAAGCGTAGATTGAATCTCTTTA------CGTCTGAACTGGGCATGTCCTCGTCCGTTTAT-------TGC-TCTACTGGGCG-GGGACTAATCAGTTTGGTCGACACTCTTTCATAGCTTTACACTCTGTTGTCATTCAAATGCATGTCATTGTTCATCTTGTCTCTTTCACGCAGATTGGGCGGTCTGCTTGCTTGATACACTCAACCATTCGCAGTAAATATGCC
#=GS CryGC3/1-189 DE JALPCB010000044.1:c48915-48727 Cryptococcus sp. GC_Crypt_3 iso00_45_44, whole genome shotgun sequence
CryGC3/1-189                    ----------------------------------------------------------------------------CATACCGCTTTCAGTCCCCCGTCCCAGCTCT-CGGC-TGGCCTT-TGTCAGTCC-GTGCTGGA--GTCGGGGTTATATAGATCTCCTTCGAGAT----CTGAAAAGCGCATATTGTACTAGA---------CGTCAGGACTGGGCATGTCATCATTCGTTAT-------ACGCTTCCACTGGATGCGTGACTAATCAGTCTTGCCGACACTCCGA-------------------------------------------------------------------------------------------------------------------
#=GS CryGC7/1-266 DE JALPBX010000024.1:19383-19648 Cryptococcus sp. GC_Crypt_7 iso00_79_24, whole genome shotgun sequence
CryGC7/1-266                    ----------------------------------------------------------------------------TGCACCGCTTTCAGTCCCCCGTCCCAGCTCT-CGGC-TGGCCTT-TGTCAGCCC-GTGCTGGA--GTCGGGGTTATATAGACCTCCTTCGAGGT----CTCAAAAGCGCATATTGTACCATA---------CGTCAGGACTGGGCATGTCATCATCCGTTAT-------ACGCTTCCACTGGATGCGTGACTAATCAGTCTTGCCGATATTCTCCATTCGTTCCCTACCTTGTGGTTCTATGCATATCATTCGTTGTTTACCTAATCGTGCTGCATCCAGCTCAGTTGAGCA--------------------------------------
#=GS CryGC5/1-283 DE JALPBZ010000055.1:c83555-83273 Cryptococcus sp. GC_Crypt_5 iso00_58_55, whole genome shotgun sequence
CryGC5/1-283                    -----------------------------------------------------------------------------ACACCGCTTTCAGTCCCCCGTCCCAGCTCT-CGGC-TGGCCTT-TGTCAGTCC-GTACTGGA--GTCGGGGTTATATAGATCTCCTTCGAGAT----CTGAAAAGCGCATATTGTAATAAA---------CGTCAGGACTGGGCATGTCATCATTCGTTAT-------ACGCTTCCACTGGATGCGTGACTAATCAGTCTTGCCGACACTCTCAATTCTTCTACCTCGTAGTTCTGCTTTGTCGTAATTCCATGCATCTGAAATATTGCTTGATACACTGTGCTGCGCCATGTCCCATAGTTATAACGT--------------------
#=GS KocImp/1-216 DE NBSH01000003.1:c1012008-1011793 Kockovaella imperatae strain NRRL Y-17943 BD324scaffold_3, whole genome shotgun sequence
KocImp/1-216                    ----------------------------------------GGACTGAAACCTCCCTCCCTCAGCCTCCTGCCTTCCTTGCCGCTTGTCAGTCCCTCGTCCTGGCGTCTGGCCTCGACCTTTCGAGAGTC--ATGCTTGAG--GCGAGGTTTTATA-------CCAATAT------AACAAAGCGAAGAACGATCAT------------GTCTTGACTGGGCATGTCTCTATCCGATCT--------TGCTTCCACTGGATCAGGGACTAATCAGTCTTGTCTACATCTGTAGC-----------------------------------------------------------------------------------------------------------------
#=GS TreTag/1-189 DE CAJHEQ010000205.1:21165-21353 MAG: Tremellales sp. Tagirdzhanova-0007 genome assembly, contig: TREM_205, whole genome shotgun sequence
TreTag/1-189                    -------------------------------------------------------------------------------CCCGCTTCCAGTCCCTCGTCCCAGCT-----GTGTGACCTTTTGTCACGCT-GTGCTGAG-TTTCGAGGATAAATTGG----CTTGATAGT----CAATGAAGCGCAGAGAGAAT--------------GACTCGACTGGGCATGTCCTGGGCCTTTT---------TAAACCCACCGG-TTTGGGACTAATCAGTCTTGTCGACACGATGTCTTGCTATGCATATGC---------------------------------------------------------------------------------------------------
#=GS TreFuc/1-248 DE LBGW01002244.1:72038-72285 Tremella fuciformis strain tr26 contig2244, whole genome shotgun sequence
TreFuc/1-248                    CGGTGGTGAAAAGAGTCCCCTGAGCTAGGATTGTCGCACCTTACTGACCTCACACCTCACCCCTGCAGCCAACCCTACGCCCGCTCTCAGTCCCTCGGACCAGC----GTCGAGGACCTTTTGTCCCTCT-GTGCTGTCC--CCGAGGTGTGTCG----------ATAT---CGATACGCAGCGCAGAAGCAA--------------GCTCTTGACTGGGCATGTCCTCGATCCGTCTT-------TGCCTCCACTGGACG-GGGACTAATCAGTCTTGACGACATGTGT--------------------------------------------------------------------------------------------------------------------
#=GS TreYok/1-209 DE BRDC01000029.1:c32580-32372 Tremella yokohamensis NBRC 100148 DNA, KCNB35TY.29, whole genome shotgun sequence
TreYok/1-209                    -------------------------------------ATCATACTGACCATCACCTTATGCCCCT--CGTGAGATCACACCCGCTCTCAGTCCCTCGGACCAGC----GTCGAGGACCTTTTGTCCCTCT-GTGCTGTCC--CCGAGGTGTGTCGTTTT-------------CGATACGAAGCGCAGAAGCAA--------------GTTCTCGACTGGGCATGTCCCCGATCCGTCTT-------TGCCTCCACTGGACG-GGGACTAATCAGTCTTGACGATATACGT--------------------------------------------------------------------------------------------------------------------
#=GS NaeAur/1-214 DE JAKFAO010000010.1:c422045-421832 Naematelia aurantialba strain NX-20 Contig10, whole genome shotgun sequence
NaeAur/1-214                    ---------------------------------------ACCCTGCAATGTGACCGCACCTCCTTGTCCCCTCCCACGTCCCGCTCACAGTCACCCGTCCCAGC-----TCGCAGACATTCAGCC-TGC--ATGCTGCG--GTCGGGAGGAG----------CCTTCGGG-CATATCGAGAGCGCAGAAGAACCGAT--------GGCGTCTTGACTGGGCATGTCTTGGTTCGATT---------TGCTTCTACTGGGCACGAGACTAATCAGCCTTGTCGACATTGTAT-------------------------------------------------------------------------------------------------------------------
#=GS TriInk/1-179 DE QAEE01001344.1:c2265-2070 Trichosporon inkin strain ATCC 18020 NODE_1372_length_3543_cov_5.52048_ID_79456, whole genome shotgun sequence
TriInk/1-179                    -----------------------------------------------------------------------------AAATCGCTCTCAGTCCTCTTTCACAGC-----GGCGAAGCCCTTTGCTTAGCT-ATGCTGTC--GGCGGAGTGT----------CACCTCGGTG----ACAGAAGCGAAGACGAACCCTCT------GGGCGTCTCGATTGGGCATGTCCTCACTCGTTA--------ACTCCTCCACGGAGTGTGGGACTAATCAATCTTGTCGACATCTCTAA------------------------------------------------------------------------------------------------------------------
#=GS TriOvo/1-249 DE WEIQ01000003.1:778437-778685 Trichosporon ovoides strain 2NF903A scaffold3-size1597232, whole genome shotgun sequence
TriOvo/1-249                    --------------------------------------------------------------------------------TCGCTCTCAGTCCTCTTTCACAGC-----GGCGACGCCTTTTGCTTAGCT-ATGCTGTCG--GCGGAGTGT----------CACCTCGGTG----ACAGAAGCGAAGAAGAACCCTCT------GGGCGTCTCGATTGGGCATGTCCTCACTCGTAA--------ACTCCTCCACGGAGTGTGGGACTAATCAATCTTGTCGACATTTATAGACAAATCCCATGCATCATTGTTGTTCTCGCATTTGCTACATCGCTGCGTGCTTCTTGCCTTGTGTACTACCCA-----------------------------------------
#=GS TriCor/1-184 DE JXYL01000008.1:c992443-992260 Trichosporon coremiiforme strain JCM 2938 scaffold_0008, whole genome shotgun sequence
TriCor/1-184                    ---------------------------------------------------------------------------AGAATTCGCTTTCAGTCCTCCTTCACAGC-----GGCGAAGCCTTTTGCCTAGC-GATGCTGTCG--GCGGAGTTGT---------CACCTCGGTG----ACAAAAGCGAAGAAGAACCCTCT------GGGCGTCTCGATTGGGCATGTCCTCACTCATAA--------ACTCCTCCACGGAGTGTGGGACTAATCAATCTTGTCGACATTTGTACAT----------------------------------------------------------------------------------------------------------------
#=GS TriAsa/1-243 DE SCGW01000331.1:c2965-2723 MAG: Trichosporon asahii isolate N5_275_008G1 N5_275_008G1_scaffold_462, whole genome shotgun sequence
TriAsa/1-243                    -----------------------------------------------------------------------------AGTTCGCTTTCAGTCCTCTTTCACAGC-----GGCGAAGCCTTTTGCCTAG-CAATGCTGTTG--GCGGAGTTGT---------CACCTCGGTG----ACAAGAGCGAAGAAGAACCCTCT------GGGCGTCTCGATTGGGCATGTCCTCACTCGTAA--------ATTCCTCCACGGAGTGCGGGACTAATCAATCTTGTCGACATTTGTATTCTCATGCATTCTCATTTCTGCCTACTCTTCTGTTCGCTGCTGTGAACTGTTGCAGTGTCGTG---------------------------------------------------
#=GS BulAlb/1-302 DE BCIX01000002.1:2420480-2420781 Bulleromyces albus DNA, scaffold: scaffold_1, strain: JCM 2954, whole genome shotgun sequence
BulAlb/1-302                    ------------------------------------------------------CACCATCCTCTTTACTCCTTGACTCCACGCTTTCAGTCCCTCGTCCTGGCT----AGGTGGACCTTTTGTCTTATCGATGCTTTGC--GCGAGGTTAGT-----CGTATTATAGTGCG----ACAAAGCGGAGAAAGAATATCCTTA------CGTCAAGACTGGGCATGTCTCTGTCTGTTTAC------ATGCCTCTACTGGACATGGGACTAATCAGTCTTGCCGATATATGTTACATAGTTGATCCTGAATATCATGCATCTCTTGCTGGTACTCTCCTCTCTTTCTGCTGAGCTCGTGACGCCTGGTCGAGTAGAGCGTGTCTT-----------------------
//

• Image source 6.4:

# STOCKHOLM 1.0
#=GF RW van Nues, September 2023
#=GF https://coalispr.codeberg.page/paper
#=GS HACAcnag12677-1/1-142 DE ncrna 6:592176:592317:-1 AE017346.1:c592317-592176 Cryptococcus neoformans var. neoformans JEC21 chromosome 6 sequence
HACAcnag12677-1/1-142           ------------ACGGCCCCATCTGCTCGTATTCGCTTCT---CCCACGCG-AACTGCGATTCCTGAATGGGCCAATAGCAAATAC----TCTCTTCTTCCCCATTCTATCTCTTCC---------------------GTCTCATAACCAT-GGCAGT------------------------------------TGAGGA-------------------------GAGAA-GATAAGATGACACGT------------------------------------------------------------------------------------------------------------------------------
#=GS from-CNAG_12677-1/1-143 DE 7:839805-839948:1 (+143) CP003826.1:839806-839948 Cryptococcus neoformans var. grubii H99 chromosome 7, complete sequence
from-CNAG_12677-1/1-143         ------------ACGGCTCCATCTGCTCGTATTCGCTTCT---CCCACGCG-AACCGCGATTCCTGAATGGGCCAATAGCAAACAA----TCTCTTCTTCCCCACTCTATCTCTTCT---------------------GTCTTATAACCACGGGCAGT------------------------------------TGAGAA-------------------------GAGAA-GACTAGATGACACAC------------------------------------------------------------------------------------------------------------------------------
#=GS R265/1-145 DE CP025763.1:769076-769220 Cryptococcus gattii VGII R265 chromosome 5, complete sequence
R265/1-145                      ------------ACGGCTCCATCTGCTCGTATTCGCATCT---CCCACGCG-AACCGCGATTCCTGAATGGGCCAATAGCAAACGA----TCTCTTCTTCCCCACTCCATCTCTTCC---------------------GTCTCAAAGCCACAGGCAGT------------------------------------TGAGAG-------------------------GAGAA-GACCAGATGACACATTC----------------------------------------------------------------------------------------------------------------------------
#=GS WM276/1-144 DE CP000291.1:765828-765971 Cryptococcus gattii WM276 chromosome F, complete sequence
WM276/1-144                     ------------ACGGCTCCATCTGCTCGCATTCGCATCT---CCCACGCG-AATCGCGATTCCTGAATGGGCCAATAGCAAACGA----TCTCTTCTTCTCCACTCCATCTCTTCC---------------------GTCTCAAAACCACAGGCAGT------------------------------------TGAGAG-------------------------GAGAA-GACTAGATGACACACT-----------------------------------------------------------------------------------------------------------------------------
#=GS CryVH5/1-157 DE JANBXI010000020.1:c229728-229572 Cryptococcus sp. VH57_BW 20, whole genome shotgun sequence
CryVH5/1-157                    --------CCCCATGGCTCCATCTGCTCGTACTCGCTTCA---CCACCGCGAAAA-ACGATTCCTGAATGGGCCTATAGCAA------TCCTTCATCTCATCTTCCTCACGCCATCTCCTTC----------------GCTTTATCTCCACGGGCGCA------------------------------------GGAGGG-------------------------GGGAA-GATCCGATGACATCTTCTCACC-----------------------------------------------------------------------------------------------------------------------
#=GS CryAmy/1-186 DE MEKH01000005.1:1270984-1271169 Cryptococcus amylolentus CBS 6273 supercont2.5, whole genome shotgun sequence
CryAmy/1-186                    --------------GGCTCTATCTGCTCGTATCAGCATCT---CCACCGCT-GTTTGCGTTTCCTGAACGGGCCTAGATTAAACACCACATCTTTTCTTTTCTCATCAATATTATCTTCTCT----------------GTTCTTGCTCAAACGGACAGA-----------------------------------GGAGAG-------------------------AGGAAAGGCTAGATGACATTCTTATCATCGATAATTATGTTTGTGGGATCCGACG--------------------------------------------------------------------------------------------
#=GS CryWin/1-189 DE AWGH01000001.1:1503571-1503759 Cryptococcus wingfieldii CBS 7118 supercont1.1, whole genome shotgun sequence
CryWin/1-189                    -----------AAAGGCTCTATCTGCTCGTATCAGCATCT---CCACCGCT-GTTTGCGTTTCCTGAACGGGCCTAGATTAAACACCACATCTTTTCTTTTCTCATCAATATATTATCTTCTCT--------------GTTCTTGCTCAAACGGACAAA-----------------------------------GGAGAG-------------------------AGGAAAGGCTAGATGACATTCTTATCATCGATGATCGTGTTTGTGGGATCCGA----------------------------------------------------------------------------------------------
#=GS CryGC2/1-274 DE JALPCC010000045.1:c97232-96959 Cryptococcus sp. GC_Crypt_2 iso00_70_45, whole genome shotgun sequence
CryGC2/1-274                    ----CACACCACATGGCTCCATCTGCTCTCACTCGTAGCA---CCAACGCGAAAA-GGGATTCCTGAATGGGCCTATAACAAC------------------CTTGTCTCGTA-----------------------------CAAGGCTGCTCAGATCTCCATCACATGTC----------------------TGCGACCTTATATTCGCGGGTAGTGGA------CGGAGTGAAGAGTGAACATATGTACATGTATGTCGTCAATCCATTATGCATTGTTCTTCCACGTTATCGCGGGCAGTTCCTTCCAATTAGGCATTCTGATCATCACTACTGATTCCTCCACCCCAACATAGG---------------
#=GS CryGC4/1-212 DE JALPCA010000772.1:c2837-2626 Cryptococcus sp. GC_Crypt_4 iso00_46_806, whole genome shotgun sequence
CryGC4/1-212                    ------------ACGGCTCCATCTGCTCGTCCTCGCCTCAA--CGTACGCGTTG--ACGATTCCTGAATGGGCCAATAATGAATCAAACA-----CATGA------------TTCAACTTCGAAAGGGGTTGGG-------TCATGTTTCCTAGAATCTCTATACTTGTC----------------------TTTGTCTTCACTTAAGTGAGATGAAG-------CGGGATGAAGGGAAGATATATGTATGTAATTATCTATCTTTGTTTGTATGCAATGT-------------------------------------------------------------------------------------------
#=GS CryFla/1-276 DE CAUG01000349.1:c15848-15573 Cryptococcus flavescens NRRL Y-50378 WGS project CAUG00000000 data, contig NODE_621_length_15855_cov_46_842133, whole genome shotgun sequence
CryFla/1-276                    --CCACCCACCCACGGCTCCATCTGCTCGTCCTCGCCTCAC--CGTACGCGTTG--GCGATTCCTGAATGGGCCCAGAACAACCTGCTATGGAGGGCTGATGTCCTGCCTCCTTCCTCCACGGGAACGGGGGCAGGGCGGG--CTCTTCCCTTGATTTCACTCGCCGGGCCGGTGG--------CTCATACCCACGAGCGAC--------------------CGGCGCGGCGCGTTGGCGACATCTGTACCTGCTATACTACTATGCATCTATGAATATGCACACCAGTTTGCTGCTCGTCGTGTTGACTCG------------------------------------------------------------
#=GS CryGC3/1-267 DE JALPCB010000052.1:c81449-81183 Cryptococcus sp. GC_Crypt_3 iso00_45_52, whole genome shotgun sequence
CryGC3/1-267                    --CTTCTTAAACACGGCTCCATCTGCTCGTGCCCGTATCT---CTTACGCGGGT--ACGATTCCTGAATGGGCCTAGAAGGAC------TCGTACTCTG------------------CCTCTCGCCATCAC-----ACGTTCTAACGACGTATGATGCTGTTCTCGGCGTTGCAGCT-----------CAACGTCGAGC--------------------------TGGGAGGTGGGGTGTACATCCACCAATGACCTCTTTTCTTCCCATATTCCATGGACTTGTATCTACTCTCTACATATAGCTTTCTCCCTCTTATGGCATACTCTGATCTCTCCAA--------------------------------
#=GS CryGC5/1-267 DE JALPBZ010000253.1:c274-8 Cryptococcus sp. GC_Crypt_5 iso00_58_253, whole genome shotgun sequence
CryGC5/1-267                    --CTTCTTAAATACGGCTCCATCTGCTCGTGCCCGTATCT---CTTACGCGGGT--ACGATTCCTGAATGGGCCTAGAAGGAC------TCGTTCTCTG------------------CCTCTCATCATCAT-----ACGTTCTAACGACGTATGATGCTGTTCTCGGCGTTGCAGCT-----------CAACGTCGAGA--------------------------TGGGGGGTGGGGTGTACATCCACCATCAAACCTTTCCATTTTATATCCTATACAGCTTCATCTTCCCATATGCTATCAGTCTACCTTCTTGCAATTTCCCTCTGCTCGATTCGAG--------------------------------
#=GS CryGC7/1-267 DE JALPBX010000008.1:c90557-90291 Cryptococcus sp. GC_Crypt_7 iso00_79_8, whole genome shotgun sequence
CryGC7/1-267                    --TTACTTAAACACGGCTCCATCTGCTCGTGCCCGCTACC---TTGACGCGGGT--ACGATTCCTGAATGGGCCTAGAAGGAG-------CGTACTCCG------------------TTTCTCATCGTCAT-----ACGT-CGTGAGACGTGTGATGCTGTTCTCGACGTTGTTCTA-----------CGACGTCGAGA--------------------------TGGGATTTGGAGTATACATCTACCACTAAATTCTTTTCATCCTATATCCTTATAGTCGTATCTCTCTTGTCTATATTGTCTCCTACTTCATATGCTATCCGGTTATCTTCTCGCAAT------------------------------
#=GS KwoMan/1-166 DE ASQF01000004.1:1425738-1425903 Kwoniella mangroviensis CBS 8886 cont1.4, whole genome shotgun sequence
KwoMan/1-166                    ------------ACGGCTCCATCTGCTCGTATTTGCTTCT---CCACCGCG-AATTACGATTCCTGAATGGGCCAATAACAATC--------TTTTGAGA------TCTTTCTTTTTCCTCCACCTTTTTTAGGTGTTATCTCTCTACCTCTCGATG------TCGAGT----------------------TAGGGAGTG-------------------------AGGAAAAGTCAGATTACATGCTTT---------------------------------------------------------------------------------------------------------------------------
#=GS KwoHev/1-183 DE ASQC01000091.1:c95820-95638 Kwoniella heveanensis CBS 569 cont2.91, whole genome shotgun sequence
KwoHev/1-183                    -----------CATGGCTCCATCTGCTCGCTCTCGCTTCA---CCACCGCGAG-TCGCGATTCCTGAATGGGCCTATAATAAGTCGCTG-GCTCTAGAAGCTAGCGACTATCTTCACTTCCTCACTTATTTCTCACTTTCATTCGGCTTT---GTTCACCATGCCGAGT----------------------AAGGGAG---------------------------GGGGAGGCGCTGGTAACATTCTTTTG-------------------------------------------------------------------------------------------------------------------------
#=GS KwoBes/1-293 DE ASCK01000001.1:c234388-234096 Kwoniella bestiolae CBS 10118 cont1.1, whole genome shotgun sequence
KwoBes/1-293                    ------CACACAACGGCTCCATCTGCTCGTATTTGCTTCT---CCACCGCGAATT-ACGATTCCTGAATGGGCCAATAACAAATCTTACTATCTCTCTTTCCCTCCATCCTT----------------TTAGGTTGTTTGCTCTTCTGCTTTCGATG------TCGAG----------------------GGGAAGAGCG-------------------------AGGGAAGGTCAGATTACATCTCTAGTTTATTAGTGTCGGTTCTTGTTGTATTATCAATGTTATACATCATTTTTACTTGAACTTGGATTACTACCTTTCGTTTACTATCGAAGGCTATTGTATCTGTTATCAGATGTAGATACCGGT
#=GS KwoDej/1-207 DE ASCJ01000059.1:141874-142080 Kwoniella dejecticola CBS 10117 cont1.59, whole genome shotgun sequence
KwoDej/1-207                    --CACACACACTACGGCTCCATCTGCTCGTATTTGCTTCA---CCACCGCAAATC-ACGATTCCTGAATGGGCCAATAACAAACCTACCTATCTTTCTTTTCCTCC---------------------------TTGTTATCTCTCTTGCTATCGATT-----------------------------CCCAATATCGAAAAA-----------------GGGGGTGGGGAAAAGCTAGATTACAATCAACCTAGTTCCATATTCTCTCTACATTCTCATTGTCTTCG--------------------------------------------------------------------------------------
#=GS KocImp/1-149 DE NBSH01000003.1:1331477-1331625 Kockovaella imperatae strain NRRL Y-17943 BD324scaffold_3, whole genome shotgun sequence
KocImp/1-149                    ------------ACGACCCCATCTGCTCGTTTTCGCCATATCACCTACGCGC--TAGCGATTCCTGAATGGGCCAAGAACAAAACGCATAGCCT---CGAATCCATGGCCACG--------------------------------------TCGAGTCTAAAA-CTTACTT-----------------------GGCAAT----------------------GGCGCAAAAGAGAGGCCAACATGTTGTA--------------------------------------------------------------------------------------------------------------------------
#=GS PapLau/1-199 DE JAAZPX010000060.1:14430-14628 Papiliotrema laurentii strain IF7SW-F4 scaffold221_cov208, whole genome shotgun sequence
PapLau/1-199                    -----------CCCGGCCCCATCTGCTCGTCCCTGCTTGACCTCCTACGCAAGG--GCGATTCCTGAATGGGCCAAGACCAAACACCCCATCGTTCCTCCCCCTCTGGCCT----AGCCGGAGGACAGGAGCGCGGCGGTCCGGCAATCACACGCTTATAACCCGGGCCCG---------------CCGTCCGTGGACAA------------------GGGCCGGGGCGTGACGAGGAGGACATGTTGT---------------------------------------------------------------------------------------------------------------------------
#=GS PapTer/1-208 DE JAHXHD010001429.1:c3292-3085 Papiliotrema terrestris strain LS28 scaffold-1428, whole genome shotgun sequence
PapTer/1-208                    ------------ACGGCTCCATCTGCTCGTCCTCGCCCCA--CCCCCCGCGTTG--ACGATTCCTGAATGGGCCAAGAACAAACTTGCTATGGAGGGCTGATGCCCTGCCCTTCTTCCTCCACGGGAAGGGGGTATGGGCGGGCTCTTCCCTTGATTTCACTCGCCGTTCC-----GTTCACTCGTCGATAGACCGAGTGA--------------------GGGGCGCGGCGCGTTGGCGACATCTGTA---------------------------------------------------------------------------------------------------------------------------
#=GS CryFla/1-206 DE CAUG01000349.1:c15838-15633 Cryptococcus flavescens NRRL Y-50378 WGS project CAUG00000000 data, contig NODE_621_length_15855_cov_46_842133, whole genome shotgun sequence
CryFla/1-206                    ------------ACGGCTCCATCTGCTCGTCCTCGCCTCA--CCGTACGCGTTG--GCGATTCCTGAATGGGCCCAGAACAAC-CTGCTATGGAGGGCTGATGTCCTGCC-TCCTTCCTCCACGGGAACGGGGGCAGGGCGGGCTCTTCCCTTGATTTCACTCGCCGGGCC----GGTGGCTCATACCCACGAGCGACC------------------------GGCGCGGCGCGTTGGCGACATCTGTACCT------------------------------------------------------------------------------------------------------------------------
#=GS NaeEnc/1-201 DE MCFC01000029.1:91188-91388 Naematelia encephala strain 68-887.2 BCR39scaffold_29, whole genome shotgun sequence
NaeEnc/1-201                    ------------ACGGCCCCATCTGCTCTCTGCCGCTTGTA-ACCTACACG--GCTGGGATTCCTGAATGGGCCAAGAAAGATCCTCATTGCTCTCAATTT------GCGATTTCTTTTAATAGTAGTTGAGAGTGATGCTTTAAAGTCCCTTGAGTTTGCCCTTTGTGTT------------TATCTCCCTTTTTAAA----------------------GGGCCGGACGGATGAGCGAACACTTTCCCAAATCT--------------------------------------------------------------------------------------------------------------------
#=GS NaeAur/1-191 DE JAKFAO010000010.1:c126190-126000 Naematelia aurantialba strain NX-20 Contig10, whole genome shotgun sequence
NaeAur/1-191                    ------------ACGGCCCCATCTGCTCCCGGCCGTCTACG-ACCCACACG--GCTGGGATTCCTGAATGGGCCAAGACCGAGTATCCTCCCTTCCGCGCT------------------------------CGTCGCGCTGTGGAGGGCTCTTGATGTCCCTGTTGCCCTTT-----------GCCGCGTTCTCGGACA----------------------GGGCGGGGCTGACCAGCGGACATTCTGGCTCAAAGTGGCATTCCGAGC-------------------------------------------------------------------------------------------------------
#=GS CrySki/1-267 DE BCHT01000002.1:c705162-704896 Cryptococcus skinneri DNA, scaffold: scaffold_1, strain: JCM 9039, whole genome shotgun sequence
CrySki/1-267                    ---CTATCATACCCGGCTCCATCTGCTCCGTACCGTATCC---CCCACGCG-GTCCGCGATTCCTGAATGGGCCCAAACGAACCCCCCAT---CTACATGACTGGGGGACC--TCCTTCGTCCTCCCATCCCTCCCTCACCCGTCACTGGGCTGAGGGGTACAGGGGTGGATAGGGCGATGGAGGGCTATCCTGCGACTGTCCCTTGTACTTGTATAGGTGACGGTTAAGGTGATAGCAGACATCTTTTTTGTTTCATCACTCCCTTCTCAGGCGTACG---------------------------------------------------------------------------------------------
#=GS TreTag/1-161 DE CAJHEQ010000704.1:100-260 MAG: Tremellales sp. Tagirdzhanova-0007 genome assembly, contig: TREM_704, whole genome shotgun sequence
TreTag/1-161                    ------------TCGGCCCCATCTGCTCGCCCTCGCTTTCT--CCCACGCTTGG-TGCGATTCCTGAATGGGCCAAGATAAAAACCA---TAT----------------------------TTTCCCGCTTTGACCATCCATGGCCGTCTCCCGATCAACCCTCGG--------------------GTTTCAAAGGAG---------------------GGGGGGCGCAGAGACAAGTGGACATGTTG----------------------------------------------------------------------------------------------------------------------------
#=GS TreFuc-a/1-165 DE LBGW01000382.1:5835-5999 Tremella fuciformis strain tr26 contig382, whole genome shotgun sequence
TreFuc-a/1-165                  ---------CACTCGGCCCCATCTGCTCCGCTTCGCTAGC---CTCCCGCGTTGCTG-GATTCCTGAATGGGCCAACAGAAACT----TCGCT-------------------------------------------------CTGACATCCATGATCCG------------------------CCGTCCGAGTAAGAC---------------------GGTGGACGCAAAGACGAGCGTACATTCAAGCCGAGGCTGGAACTTCAATAAGCAGTC------------------------------------------------------------------------------------------------
#=GS TreYok/1-161 DE BRDC01000054.1:6571-6731 Tremella yokohamensis NBRC 100148 DNA, KCNB35TY.54, whole genome shotgun sequence
TreYok/1-161                    -----------GCCGGCCCCATCTGCTCCGCTTCGCTAGA---CCCCCGCGTTGCTG-GATTCCTGAATGGGCCAACACAGACT----CTGCT-------------------------------------------------CTGATATCCATGAT----------------------TCGCCGATGACATAGACGAC---------------------GGGGGACGCAAAGACGAGCATACACTCACCTCAAATTCAGTCACGGGCATGAA----------------------------------------------------------------------------------------------------
#=GS TreFuc-b/1-161 DE BRDD01000206.1:94144-94304 Tremella fuciformis NBRC 9317 DNA, KCNB80TF.206, whole genome shotgun sequence
TreFuc-b/1-161                  -----------GCCGGCCCCATCTGCTCCGCTTCGCTAGA---CCCCCGCGTTGCTG-GATTCCTGAATGGGCCAACACAGACT----CTGCT-------------------------------------------------CTGATATCCATGAT----------------------TCGTCGACGAGAAACACGAC---------------------GGGGAACGCAAAGACGAGCATACACTCACCTCAACTTCAGTCACGGATGTGAA----------------------------------------------------------------------------------------------------
#=GS CutDas/1-267 DE BEDX01000005.1:618070-618336 Cutaneotrichosporon daszewskae DNA, scaffold: scaffold_5, strain: JCM_11166, whole genome shotgun sequence
CutDas/1-267                    ---CACGGCGACACGGCTCCATCTGCTCTGCCTCGCATCC---CCCACGCGAGAC-AAGATTCCTGAATGGGCCCAGAAGCACT------GCA--------------------------------------------------TCTACAAATTGACCCGCCCTGGG--------------TCTCT-CTACTCCTTGGC---------------------GGGGTCTCATTT--GGTGCATACATCCGTATTGTAAGTATGCATTGTGTTTTCGAGCTGCGCGGGGGCATGGAGGTTGGTCGTGCTGTGGAGTGTTAGGGGGAGGAGAAGATTGAGTGATAGGAGGTGTTCACTTGGCATCCATTTTGG----
#=GS VanHum/1-277 DE QKWK01000015.1:126900-127176 Vanrija humicola strain CBS 4282 CBS4282_scaffold15, whole genome shotgun sequence
VanHum/1-277                    TCTTCCTCATCCCCGGCTCCATCTGCTCTGTCTCGCTGCT----CCGTGCGTACG-CAGATTCCTGAATGGGCCTAGAGCAACCGCGCGCCGAGGTGTACTGCGCTTGCGCGG----------TACACCGACGCGCGCTATGCACTACAAATTGACCCGCTCCGGG--------------TCTCTTCTACTCCGGAGC---------------------GGGGTCTCATCT--GGTGCCTACAGAGGTCAGTACATAGTATGCATTTACGTGTCTCAGCGGCGGCGGCGGCGGTAGCAGCAGCAGCAGCGGCGGCGTCGGCGCGTCTCG-------------------------------------------
#=GS BulAlb/1-268 DE CAMYTR010000035.1:c110766-110499 Bullera alba genome assembly, contig: jcf7180000012128, whole genome shotgun sequence
BulAlb/1-268                    --CACTCCTCACACGGCCCCATCTGCTCGTCCTCGCTGGTA--CCCACGCGTTG--GCGTTTCCTGAATGGGCCTAGAACCA-----GGCGGATTGCGACCA----------------------------TTGTGTCCTTTTGCCAACCTTTTGAACTTTGCG--------------------TACCGCGCCTCTGAACGCAT---------GGGGGTGGGGGTGCACGGTGACTAGGGGACATGCCAGTGCAAGTATAATGGAGATAGGTTGGATGGGGAGATGCGTATGTATTGATGGACGAGGAGTTTTGGTTGTGCTTCTTCGAGATGGGCA------------------------------------
#=GC RF_cons                    ------------ACGGCUCCAUCUGCUCGUACUCGCUUCU___CCCACGCG_AGC_GCGAUUCCUGAAUGGGCCAAGAACAA
#=GC SS_cons                    ------------..(((.(((((...((((...(((............))).....)))).....)).))))))........
//

• Image source 6.5:

# STOCKHOLM 1.0
#=GF RW van Nues, September 2023
#=GF https://coalispr.codeberg.page/paper
#=GS HACAcnag12677-2/1-172 DE ncrna 6:591774:591945:-1   >AE017346.1:c591945-591774 Cryptococcus neoformans var. neoformans JEC21 chromosome 6 sequence
HACAcnag12677-2/1-172           CTGGCTTGACTCAAGACGTCTTCCTTTTATTTCACAGGAAGGTGTCAACTGAACCGGCCTAGAACAAAATCCTGCCTA-TACCCC-TCTAT--CTGCCCGTTTCGACAA-GCAAAGTT-CAA-TGTAGTACTTGGGCTGGCCACGGAATGGATTCGTTGAGTGGTGCTGGCTTACATGT
#=GS from-CNAG_12677-2/1-175 DE XR_001045983.1:704-878 CP003826.1:840185-840359 Cryptococcus neoformans var. grubii H99 chromosome 7, complete sequence
from-CNAG_12677-2/1-175         TTGGCCTGACTCAAGACTTCTTCCTTTTTATTCACAGGAAGGTGTCAACTGAACTGGCCTAGAGCAAAATTCTGCCTA-TACCCCACTTATATTCGTCCATCTCGACAA-GCAAGGTTCCAA-TGTAGTACTT-GGCTGGCCACGGAATGGGTTCGTTGAGTGGCGCTGGCTTACATAT
#=GS WM276/1-176 DE CP000291.1:766206-766381 Cryptococcus gattii WM276 chromosome F, complete sequence
WM276/1-176                     CTGGCCTGACTCAAGACCTCTTCCTTTTTATCCACAGGAAGACGTCAACTGAACTGGCCTAGAGCAAAACCCTGCTTGTTACTCCACGTATATCCGCCCGTTTCGACAA-GCAAGGTCCCGATTGTGGTACTT--GCTGGCCACCGAATGGGTTCGTTTAGTGGCGCTGGCTTACATAT
#=GS R265/1-178 DE CP025763.1:769440-769617 Cryptococcus gattii VGII R265 chromosome 5, complete sequence
R265/1-178                      CTGGCCTGACTCAAGACCTCTTCCTTTTTATCCACAGGAAGACGTCAACTGAACTGGCCTAGAGCAAAACTCTGCTTGTTACTCCACTTATATCCGCCCGTTTCGACAAAGTAAGGTCCCGATCGTGGTACTT-GGCTGGCCACCGAATGGGTTCGTTGAGTGGCGCTGGCTTACATAG
//

• Image source 6.6:

# STOCKHOLM 1.0
#=GF RW van Nues, September 2023
#=GF https://coalispr.codeberg.page/paper
#=GS HACAcnag12667-1/1-173 DE AE017346.1:777517-777689 Cryptococcus neoformans var. neoformans JEC21 chromosome 6 sequence
HACAcnag12667-1/1-173            -----------------------------------------------------------------TGGTATACGCCTTCGTC--TTTGACGGCCTCACA-------------TTCACACTGATGGTGGGTTCCGCAGAGAAGGGGGCCAGAA-----------------------------CATTCTTTTTGC-----------------------GAGAGT---------------GCGCCCCGCAGGACTGT--------TCAT-GCCCGTTCCCTCGGAACGTCGGTGGTTGGGCGGTTGTATGGGGATTCAAATGCTCACATTTT---
#=GS from-CNAG_012667-1/1-172 DE CNAG_12667 CP003826.1:c652379-652208 Cryptococcus neoformans var. grubii H99 chromosome 7, complete sequence
from-CNAG_012667-1/1-172         ----------------------------------------------------------------ATGGT--ACGCCTTCGTC--TTTGACGGCCTCACA-------------TTCACACTGATGGTGGGTTCCGCAGAGAAGGGGGCCAGAA-----------------------------CGTTCTCTTTGC-----------------------GAGAGT---------------GCGCCCCGCAGGACTGT--------CCAT-GCCCGTTCCCTCGGGACGTCGGTGGTTGGGCAGTTGTATGGGGATTCAAATGCTCACATTTT---
#=GS R265/1-175 DE CP025763.1:c588245-588071 Cryptococcus gattii VGII R265 chromosome 5, complete sequence
R265/1-175                       ---------------------------------------------------------------TATGGTATATGCCTTCGTC--TTTGACGGCCCCACA-------------TTCACACTGATGGTGGGTTCCGCAGAGAAGGGGGCCAGAA-----------------------------CGTTCTCTTTGC-----------------------GAGAGT---------------GCGCCCCGCAGGACTGG--------CCAT-GCCCGTTCCCTCGGAACGTTGGTGGTTGGGCGGTTGTATGGGGATTTAAATGCTCACATTTT---
#=GS WM276/1-175 DE CP000291.1:c584807-584633 Cryptococcus gattii WM276 chromosome F, complete sequence
WM276/1-175                      ---------------------------------------------------------------TATGGTATATGCCTTCGTC--TTTGACGGCCTCACA-------------TTCACACTGATGGTGGGTTCCGCAGAGAAGGGGGCCAGAA-----------------------------CGTTCTCTTTAC-----------------------GAGAGT---------------GCGCCCCGCAGGACTGG--------CCAT-GCCCGTTCCTTCGGAACGTTGGTGGTTGGGCGGTTGTATGGGGATTTAAATGCTCACATTTT---
#=GS KwoSha/1-260 DE NQVO01000008.1:500000-500259 Kwoniella shandongensis strain CBS 12478 scaffold00008, whole genome shotgun sequence
KwoSha/1-260                     -------------------------------------------------------TTCTTCTTCATGGT--ACGCCATCA---TTTTGATGGACCCTTGTCAATCTACGGATTTACTCCTATCCGAGGGCTCGTTGAAGCAGGTGGCCAGAAGAAACACCTCTCCTATTCTCTCCCTTTTTCGATCTTTGCAAAAAGAAAGAGGAACGCAGGTGTAGAGAGTAAGAGGGGTATAAGGGCGCCCCGCAGGACTGTCTTGCGACGAATA--TACC--AATAGGTCGGACGGTTGTATGG-GGATATTTG-------AAATGCTCACATTCTCAT
#=GS CryVH5/1-244 DE JANBXI010000020.1:203218-203461 Cryptococcus sp. VH57_BW 20, whole genome shotgun sequence
CryVH5/1-244                     ----------------------CGAAACTTCCACCCACCTCTTCGCTTCTCTTTCCTCTTCTCTATGGT--ACGCCTTCATACTTTTGACGACCCCACGC-------TGCCCTTACAACCGGTACAACCGCGGGGGAGCAATCTGAGGA-------GGCCAGAG-----------------CGTTTCTTTTCCTC---------------------GCAAGAGGAAAAAAA----GGGCGCCCCGCAGGACCGGTTGGC------CCCCTACTTGAAAAGGCGGGACGGTGGTCGGGCGGTTGTATGGGGACTCAAATGCTCACATCTCA--
#=GS CryGC7/1-275 DE JALPBX010000004.1:57651-57925 Cryptococcus sp. GC_Crypt_7 iso00_79_4, whole genome shotgun sequence
CryGC7/1-275                     CTCACCAAACTTGTACTGTACCATATTTTCCAGGAGCCAACTCTCTCTTCTCTTCTTTTTCTTCATTCC--ACGCCATCACACTTTTGACTGCCCATCGCACGA------TCTCGCAACACGCAGTCGTATCATCGAAGGGCATGATGAAGCAGGTGGCTAGACCTAGTCTTCGACT--CGCATTCTC---------------------------AGAATGTGTAGAACGTAGACGGGCGCCCCGCAGGACCGG-----------TCAAGCTTCTTCTCGGTATTT--------GGGCGGTTGTATGGGGACTCAAATGCTCACATCTCGA-
#=GS CryGC5/1-246 DE JALPBZ010000009.1:32221-32466 Cryptococcus sp. GC_Crypt_5 iso00_58_9, whole genome shotgun sequence
CryGC5/1-246                     ----------------------------------------TTCTCTCTTTCTCCTCTCTTCTTCATTCC--ACGCCATCACACTTTTGACTGCCCATCGCACGACCTCGACTTCGCAGT-TGCAGTCGTATCATCGAAGGGCATGATGAAGCAGGTGGCCAGACCGAGTCT-CGTCT--CGCGCTCTTCCT--------------------CGGAAGAGTGCGTAAGACGCAGGCGGGCGCCCCGCAGGACCGG-----------TCGAGCTTCTTCTCGGTATTT--------GAGCGGTTGTATGGGGACTCAAATGCTCACATCTCGA-
#=GS CryGC3/1-246 DE JALPCB010000001.1:96065-96310 Cryptococcus sp. GC_Crypt_3 iso00_45_1, whole genome shotgun sequence
CryGC3/1-246                     ----------------------------------------TTCTCTTCTTCTCTTCTCTTCTTCATTCC--ACGCCATCACACTTTTGACTGCCCATCGCACAACGTCCGTCTCGG----CGCCGTCGTACCGTCGAAGGGCATGATGAAGCAGATGGCTAGACCGAATCT-CGTCTCACCCTCTCTCTTTTT-------------------GATTGAGTGTGCAGCACGCAGGCGGGCGCCCCGCAGGACCGG-----------TCGAGCTTCTTCTCGGTATTT--------GAGCGGTTGTATGGGGACTCAAATGCTCACATCTCGA-
//

• Image source 6.7:

# STOCKHOLM 1.0
#=GF RW van Nues, September 2023
#=GF https://coalispr.codeberg.page/paper
#=GS HACAcnag12667-2/1-167 DE ncrna 6:777884:778051:1
HACAcnag12667-2/1-167           --------CTGCCACTT-TTATCTTCCTCCCGACACCATAAC-CCAGGTTGGG---GGGATAAACTAGGTGGCTACAGTA-ATCCAACCACGA-CTTGTTTT------CGAGACTTGTGTGTGGGCAAGCTT-----CAGAGCGCGCTTCTCATTT-CCC---------------------ACGAGACGCGCGTTTTGAAGGCTTGCGACATGCT------------------------------------------------------------------------------------------------------------------------------------
#=GS from-CNAG_12667-2/1-165 DE CP003826.1:c652008-651844 Cryptococcus neoformans var. grubii H99 chromosome 7, complete sequence
from-CNAG_12667-2/1-165         --------CTGCCACTT-TTATCTTCCTCCCGACACCATAAC-CCAGGTTGGG---GGGATAAACTAGGTGGCTACAGTA-ATCCAACCACGA-CTTGTTTT------CGAGACTTGTGTGTGGGCAAGCTT-----CAGAGCGCACTTCTCATGTTTTT---------------------ACGA-ACGCGCGTTTTGAAGGCTTGCGACATG--------------------------------------------------------------------------------------------------------------------------------------
#=GS R265/1-166 DE CP025763.1:c587840-587675 Cryptococcus gattii VGII R265 chromosome 5, complete sequence
R265/1-166                      --------CTGCCACTT-TTATCTTCCTCCCGACACCATAAC-CCAGGTTGGG---AGGATAAACTAGGTGGCTACAGTA-ATCCAACCACGA-CTTGTTTT------CGAGACTTGTGTGTGGGCAAGCTT-----CAGAGCGCACTTCTCATTTTTCC---------------------ACGGGAAGGGCGTTTTGAAGGCTTGCGACATG--------------------------------------------------------------------------------------------------------------------------------------
#=GS WM276/1-166 DE CP000291.1:c584402-584237 Cryptococcus gattii WM276 chromosome F, complete sequence
WM276/1-166                     --------CTGCCACTT-TTATCTTCCTCCCGACACCATAAC-CCAGGTTGGG---GGGATAAACTAGGTGGCTACAGTA-ATCCAACCACGA-CTTGTTTT------CGAGACTTGTGTGTGGGCAAGCTT-----CAGAGCGCACTTTTCATTTTTCC---------------------ACGGGAAGGGCGTTTTGAAGGCTTGCGACATG--------------------------------------------------------------------------------------------------------------------------------------
#=GS CryAmy/1-182 DE MEKH01000010.1:c515906-515719 Cryptococcus amylolentus CBS 6273 supercont2.10, whole genome shotgun sequence
CryAmy/1-182                    -------CATGCCTCT--TTATCTACTTTCCGATTCGTT-----CACGTCGG--CAAAGTTAAACTAGGTGGCTAGATCA-ATCCCTCCA-GCTCTTTTTT-------CGAGACTTGCAGCTGGGCGGGCT-----ACAGAGCGTGTCTCTCCCTCACAGAGGTGT-------------AAATGAGAGATGGGTTTTGAAGGCCTGCGACAGATAGTATCGTAGA--------------------------------------------------------------------------------------------------------------------------
#=GS CryFlo/1-182 DE RRZH01000011.1:c616351-616164 Cryptococcus floricola strain DSM 27421 chromosome 10, whole genome shotgun sequence
CryFlo/1-182                    -------CATGCCTCT--TTATCAACTTTCCGATTCGTT-----CACGTCGG--CAGAGTTAAACTATGTGGCTAGATCA-ATCCCTCCA-GCTCTTGTTT-------CGAGACTTGCAGCTGGGCGGGCT-----ACAGAGCGTGTCTCTCCCTCACAGAGGTGT-------------AAATGAGAGATGGGTTTTGAAGGCCTGCGACAGATAGTATCGTAGA--------------------------------------------------------------------------------------------------------------------------
#=GS CryVH5/1-181 DE JANBXI010000020.1:203630-203810 Cryptococcus sp. VH57_BW 20, whole genome shotgun sequence
CryVH5/1-181                    CACGCGCAACGCCACTT-TAATCTTCCTCCCGGCTGCAAG-CCCAACGCCG--AGGGGGATAAACTAGGTGGCAACATCA-ACCCCATCA-GCCCTTGAGT-------CGAGACTTG-GGCTGAGCAGGTTT-----CAGAGCGTGTTTCTCCTGTTGTT---------------------ATGAGAAGTGTGTTTTGAAGGCTTGCGACAGCTCTTCCTG------------------------------------------------------------------------------------------------------------------------------
#=GS CryGC5/1-246 DE JALPBZ010000009.1:32740-32985 Cryptococcus sp. GC_Crypt_5 iso00_58_9, whole genome shotgun sequence
CryGC5/1-246                    ---CATCCGCGCCACT--TTATCATCCCCCCAGCCAA---ACTTCACGTTGGG-ACGGGATAAACTAGGTGGCTACATGG-ATCCATAC-CG-TCTCGTTTT------CGAGAACTGAGGC-GGGCAAACTTTTT--CAGAGCGTGCTTTGCTCTTTCCCATCG--------AGAACCATCAAGCAGAGGGCGTTTTGAA-GTTTGCGACAGCTATCACATCGGGTCTATATCGTGTCCATCATGCACAGCGTGTTCGCGGATAATCCTATTGCGT-----------------------------------------------------------------------
#=GS CryGC7/1-231 DE JALPBX010000004.1:58191-58421 Cryptococcus sp. GC_Crypt_7 iso00_79_4, whole genome shotgun sequence
CryGC7/1-231                    CCTGCTACGCGCCACTT-TTATCTTCTCTCCAACCAG---TCTTCACGTTGG--AAGGGATAAACTAGGTGGCTACATTG-ACCCATAC-CG-TCTCTTTTT------CGAGAACTGGGAC-GGGCAAACTTTTT--CAGAGCGTGCTTTGCTGTTTCTCAGCG--------AAAACGTCAAAGCAGAGGGCGTTTTGAA-GTTTGCAACAGCTATCACACTTGATTCATCTCGTGTTCGCTCATACTCAAATTCGTC-----------------------------------------------------------------------------------------
#=GS CryGC3/1-225 DE JALPCB010000001.1:96600-96824 Cryptococcus sp. GC_Crypt_3 iso00_45_1, whole genome shotgun sequence
CryGC3/1-225                    ------CCGCGCCACT--TTATCATCCCCCCAACCAA---TCTTCACGTTGGG-ACGGGATAAACTAGGTGGCTACATGG-ATCCATAC-CG-TCCCGTTTT------CGAGAACTGGCGC-GGGCAAACTTTTT--CAGAGCGTGCTTTGCTCTTTCTCAGCG--------AAAATGATCAAGCGGAGGGCGTTTTGAAGGT-TGCGACAGATATCACGTATGGCGTATGTCGTGTGTAACGTGATCGCGGGTAATC-----------------------------------------------------------------------------------------
#=GS KwoSha/1-175 DE NQVO01000008.1:500648-500822 Kwoniella shandongensis strain CBS 12478 scaffold00008, whole genome shotgun sequence
KwoSha/1-175                    --------ATGCCACTT-TTATCTTCCTCCCGACCTTTTCCC-CCACGTCGG---ACGGATAAACTAGGTGGCTATATCA-ATCCCCCCAAG---TCATTTT------CGAGAATGATCCTTGGGCAGACTTTTT--CAGAGCGTGTTT-CGAGTC-AAAACAT-----------------GTGCGAAAGGCGTTTTGAA-GTCTGCGACAAGCAATCTC-------------------------------------------------------------------------------------------------------------------------------
#=GS KwoMan/1-198 DE ASQD01000052.1:c316359-316162 Kwoniella mangroviensis CBS 10435 cont2.52, whole genome shotgun sequence
KwoMan/1-198                    --------ACGCCACTT-TTATCTTCCCACCAACTACCATTCATCATGTTGGAAAAGGGATAAACTAGGTGGCTACATCAAATCCAAAA----TCATTATTTT-----CGAGAATAACGATTTGTAAAAAACTTT-GCAGAGTGTGTTCTCGAATATCATTCCT-----------------ATGAGAA-GGCACTTTGAAGTTTTTCGACATTCCATTGATTTCTTTATTAGTCG----------------------------------------------------------------------------------------------------------------
#=GS KwoDej/1-269 DE ASCJ01000068.1:c135408-135140 Kwoniella dejecticola CBS 10117 cont1.68, whole genome shotgun sequence
KwoDej/1-269                    CCGCTTCCCCGCCACTT-TTATCTTCCCTTCAACAAACA---ACAATGTTG--AAAGGGATAAACTAGGTGGCTAGATCAAA--CCCA----TTTTCCTCTTTTT---CGAGAATCAGGAATTTGTAAAACTTTTAGCAGAGCGTGTTCTCGTGTTCTGGATTCTGTATTATTCAGAACAAGAAGGGAAGGCGCTTTGAAGTTCTACTACATCATCGTCGTCAAATTCATTCATCAGTATCAGTATCAGTATCAGTATGAACGGTATCATGTATCTTGATATGT---------------------------------------------------------------
#=GS TriInk/1-171 DE QAEE01000162.1:3078-3269 Trichosporon inkin strain ATCC 18020 NODE_164_length_7480_cov_5.55802_ID_77040, whole genome shotgun sequence
TriInk/1-171                    --------CCGCCACTT-TTATCTTCCTTCCGACTAGC---TTCCACGTCGG---AGGGATAAACTAGGTGGCTACATCC-ATCAG-----------------------CTGACTG---------------------CAGATCGCTTGACTCTTTCCCTTTGTGG------------ACCCGTGGGTCACGCGTTTTGAATGTCTGCGACATCTCCA-TTTCCAGTATTCATGTATTAGATGAA-------------------------------------------------------------------------------------------------------
#=GS TriOvo/1-166 DE WEIQ01000018.1:731638-731803 Trichosporon ovoides strain 2NF903A scaffold18-size875202, whole genome shotgun sequence
TriOvo/1-166                    -------TCCGCCACTT-TTATCTTCCTTCCGACTAGC---TTCTACGTCGG---AGGGATAAACTAGGTGGCTACACT--ATCAG-----------------------CTGACTG---------------------CAGATCGCTTGACTCTCTCCCTCTGTGG------------ACCTGTGGGTCACGCGTTTTGAATGTTCGCGACATTTCCAAATTCCAATATTTACGTAT-AG------------------------------------------------------------------------------------------------------------
#=GS TriCor/1-217 DE JXYL01000002.1:203580-203796 Trichosporon coremiiforme strain JCM 2938 scaffold_0002, whole genome shotgun sequence
TriCor/1-217                    ----GTCCCCGCCACTT-TTATCTTCCTTCCGACTAGC--TACCTACGTCGG---AGGGATAAACTAGGTGGCTACACC--ATAAG-----------------------CCGACTG---------------------CAGATCGCTTGACTCTTCCCTTCGGGG-------------ATCTGTGGGTCACGCGTTTTGAACGTCAGCGACATTCCTTCACGTCGTCAAATGATTTCTGTGTAGTCAGTGAATAGCTGTGTTATCGTAATGAATGAATGCTTGTCTC-------------------------------------------------------------
#=GS TriAsa/1-270 DE SCGW01000053.1:7110-7379 MAG: Trichosporon asahii isolate N5_275_008G1 N5_275_008G1_scaffold_93, whole genome shotgun sequence
TriAsa/1-270                    -CTCGCGCCCGCCACTT-TTATCTTCCTTCCGACTAGC--CATCTACGTCGG---AGGGATAAACTAGGTGGCTACACC--ATCAG-----------------------CCGACTG---------------------CAGATCGCTTGACTCTTCCCTTCGGGG-------------ATCCGTGGGTCACGCGTTTTGAATGTCAGCGACATCTCATACCGTCTCTCAACTCGTTTGTGTGCAGTCAGTGATAGAGTCCTCATCATAGCGAATGCAAACTTGTCGGATGTCATGTTGTTCGTTATGCTGAGAGCGATTAATCTTCCGCAAAGTCAG-----------
#=GS TreMes/1-160 DE AFVY01000317.1:92628-92788 Tremella mesenterica DSM 1558 strain Fries TREMEscaffold_12_Cont317, whole genome shotgun sequence
TreMes/1-160                    -------ATCGCCATTTTTTATCTTCCCCCCGATTCGT-----ACACGTCGG---TGGGATAAACTAGGTGGCTATATC--GTATGCTA------------------CGCAGACT-------------------TCGCAGAGCGTGTCTTC----------------------------ATTGTGGAGAGATGTTTTGAA-GTCTGCTACATCATCCATTCGTCTTTGTCGATCTCTATCGTT--------------------------------------------------------------------------------------------------------
#=GS TreYok/1-168 DE BRDC01000029.1:384691-384858 Tremella yokohamensis NBRC 100148 DNA, KCNB35TY.29, whole genome shotgun sequence
TreYok/1-168                    --------ACGCCACTT-TTATCTTCCTGTCGACCCGCATG--ACACGTCG---AGGGGATAAACTAGGTGGCTATAGCA-ATGAAATTA-------------------CAGACT-------------------TCGCAGAGCGTCCCTCGGGATCTTGTCG-------------------GCGAGAGGGGCGTTTTGAA-GTCTGCGACAGACTCTGGCGTTCCCTTTGCTCAACTAAGA----------------------------------------------------------------------------------------------------------
#=GS TreFuc/1-168 DE LBGW01000398.1:25300-25467 Tremella fuciformis strain tr26 contig398, whole genome shotgun sequence
TreFuc/1-168                    -------CACGCCACTT-TTATCTTCCTGTCGGCTCGCATGACA--CGTCG---AGGGGATAAACTAGGTGGCTATAGCAAA-GAATTTT-------------------GAGACT-------------------TCGCAGAGCGTCCCTTGGGATCTTGTCG-------------------GCGAGAGGGGCGTTTTGAA-GTCTGCGACATACCTCGGCTCGCAGCTGGATTTATTATC-----------------------------------------------------------------------------------------------------------
#=GS PapTer/1-176 DE JAHXHD010001360.1:16-191 Papiliotrema terrestris strain LS28 scaffold-1359, whole genome shotgun sequence
PapTer/1-176                    -------TTTGCCGTTT-TTATCTTCCTCCCGATCATTCATACCTCCATCGGCGC-AGGATAAACTAGACGGCGATAGTA-ATCCACCTCGGCGGGGCTCGCCTCG-TCGAGGTCGGAGG---------TCTTCTTGCAGAATGTACCAGTCGCAAACACCCCC-----------------ACGGCTGGCACGTTTTGATAGAGGGACACACC--------------------------------------------------------------------------------------------------------------------------------------
#=GS NaeAur/1-163 DE JAKFAO010000010.1:852422-852584 Naematelia aurantialba strain NX-20 Contig10, whole genome shotgun sequence
NaeAur/1-163                    -------CACGCCTCTC-TTATCTTCCCTCCGACTACAAGCCAC---GTCGGCG---GGATAAACTAGGTGGCAACATGGACCGTCCCTCGAGGACGTTTCGC------CAGACTG---------------------CAGATCGGGTGTCCCTTGTC------------------------GTGGGATATCCGTTTTGATCGTCTGTGACATTATCCTCTCGTCGAAG-----------------------------------------------------------------------------------------------------------------------
#=GS NaeEnc/1-171 DE MCFC01000064.1:70893-71064 Naematelia encephala strain 68-887.2 BCR39scaffold_64, whole genome shotgun sequence
NaeEnc/1-171                    -------AACGCCTCTC-TTATCTTCCCTCCGACTGCACAACCCA-CGTCGGCG---GGATAAACTAGGTGGCAATACCAACCACTTTGTCCTTCGCGGACAATGCTGTCAAACTG---------------------CAGATCGGTTCTTCCTCTTTACTTTGGT------------AATCGTGGAAGACTCGTTTTGATCGTTTGTCACATTTTC-----------------------------------------------------------------------------------------------------------------------------------
#=GS VarHum/1-271 DE QKWK01000007.1:713470-713740 Vanrija humicola strain CBS 4282 CBS4282_scaffold07, whole genome shotgun sequence
VarHum/1-271                    ------ACCTGCCACTT-TTATCTTCTTACCGACTACAA-CCTTCAGGTCGG---TGAGATAAACTAGGTGGCGAAAGTG-AT----------GTCTTTCGAGACACGGAAGCCTG---------------------CAGATCGCCCCACTCTTCATTG--------------------ACGTGGGTGGTGCGTTTTGATGGCAGCCGACATACCAACCCTCTAGCGGCTCATACCCGTGCTTACCCTTGCGGTGCAGCTTATTGGGCGTTGTTAGCGTGTCATCAGAAAGTGGAACCGAGCTGTTAGTTTCTCGTAGCGGTCGAACCGAGCTG-------------
#=GS CutDas/1-270 DE BEDX01000004.1:502600-502869 Cutaneotrichosporon daszewskae DNA, scaffold: scaffold_4, strain: JCM_11166, whole genome shotgun sequence
CutDas/1-270                    ----TTCAACGCCACTC-ATATCTTCGTCCCGACCTCTG---CCCACGTCGGGG---TGATAAACTAGGTGGCAACAGTAACT-------------------------GTTGGTCG---------------------CAGATCGTACTACTTTCAAAC--------------------ACTCCGAGTAGCGCGTTTTGAAGGCCAGCAACATGCCACTCTATCGTGGATAGAGTTGCTTCCTCATGCATGTGAATAGCTCCAATCCTCGGCCAGTTCCTCTCGGACGCTCCACTTCGGACGCTCCAAGCACGATTCCGATTCCAGCGAACGCATTGCAAACCCACAC
#=GS CutOle/1-268 DE QKWL01000005.1:c178028-177761 Cutaneotrichosporon oleaginosum strain ATCC 20508 ATCC20508_contig05, whole genome shotgun sequence
CutOle/1-268                    -----CGCTCGCCACTT-TTATCTTCCTTCCGACTTG---ACTTTACGTCGGGG---GGATAAACTAGGTGGCAACAAT--AT----------GTTGCTTGACAGCCACTAGATTG---------------------CAGATCGCTCTGCTCTCCCCTT---------------------CGTGGGCTGCGCGTTTTGAAGTCTAGTGACATTTTGTATAGGGTGGCTATGAATCATTGCTCTGCCGACCGTTGTGGAGCACGGGGAAGGTAGATATAAATACTCATGCACGGTACTCCACAGATGTTGCTCTTGTGAGACCGAGCGACGCGGG-------------
//

• Image source 6.8:

# STOCKHOLM 1.0
#=GF RW van Nues, September 2023
#=GF https://coalispr.codeberg.page/paper
#=GS H99/1-284 DE CP003826.1:335438-335720 Cryptococcus neoformans var. grubii H99 chromosome 7, complete sequence
H99/1-284                     ------------------------------------------------cAAAACCAACCTCGATGCACCG-TATAGCGGTGCTCTCTCCCCCCG-------ACCTCTTTTACGGG-------ACGG-----TGAGAAACGGAGCGGGGTAAGAATAATCC-------------TTTGGCGGGTTGATCTACTAGGCACTTTCT-------GTGCTTGGATA--GG-------TTGCTGATTGTGCTCGAAAGTCAGTAAT---TCTTTGGGAT-ACTCGACATAATTTCAAGGTCTATTAGATGTGTTATAATGCATGACGATCTTATAGTACAATAGCAGTTCAAACAGAGTTGAAACAATTATTCCATGGTCAAGACACTGCT---
#=GS from-CNAG_12640/1-184 DE CP003826.1:335437-335620 Cryptococcus neoformans var. grubii H99 chromosome 7, complete sequence XR_001045946.1:1-170 Cryptococcus neoformans var. grubii H99 hypothetical RNA (CNAG_12640), ncRNA
from-CNAG_12640/1-184         ------------------------------------------------caaaacCAACCTCGATGCACCG-TATAGCGGTGCTCTCTCCCCCCG-------ACCTCTTTTACGGG-------ACGG-----TGAGAAACGGAGCGGGGTAAGAATAATCC-------------TTTGGCGGGTTGATCTACTAGGCACTTTCT-------GTGCTTGGATA--GG-------TTGCTGATTGTGCTCGAAAGTCAGTAAT---TCTTTGGGAT-ACTCGACATAA-------------------------------------------------------------------------------------------------------
#=GS HACAcnag12640/1-188 DE AE017346.1:c1123662-1123475 Cryptococcus neoformans var. neoformans JEC21 chromosome 6 sequence
HACAcnag12640/1-188           ------------------------------------------------tAAAATCAACCTCGATGCACCG-TATAGCGGTGCTCTTTCCCCCCG-------ATATCTTTTACGGG-------ACGG-----GGAGAAACGGAGCGGGGTAAGAGTGATCC-------------TCTGGCGGGTTGATATGCCAGGCGCTTTCT-------GTGCTTGGATAATGG-------TTGCTGATTGTGCTCGAAAGTCAGTAAT---CATTTGTGAT-ACTCGACATAAtt-----------------------------------------------------------------------------------------------------
#=GS WM276/1-183 DE CP000291.1:294919-295101 Cryptococcus gattii WM276 chromosome F, complete sequence
WM276/1-183                   ------------------------------------------------TAAAACCAACCTCGATGCACCG-TATAGCGGTGCTCTCTCCCCCCG--------AATCTTTTACGGG-------ACGG-----TGAGAAACGGAGCGGGGTAAGAGTGATGT-------------TCTAACGGGTTGATCTGCTACGCACTTTCT-------GTGCTTGGATAATGG-------TTACTGGTTGTTTTT--AAGCCAGTAAT---TTATTGGGAT-ACTCGACATAA-------------------------------------------------------------------------------------------------------
#=GS R265/1-187 DE NPNA01000009.1:306313-306499 Cryptococcus gattii VGII strain R265 tig00000017, whole genome shotgun sequence
R265/1-187                    ------------------------------------------------TAAAACCAACCTCGATGCACCG-TATAGCGGTGCTCTCTCCCCCCG--------AATCTTTTACGGG-------ACGG-----TGAGAAACGGAGCGGGGTAAGAGTGATGT-------------TCTAGCGGGTTGATCTGCTACGCACTTTCT-------GTGCTTGGATAATGG-------TTACTGATTGTTTTTAAAAGTCAGTAAT---TCATTGGGAT-ACTCGACATAATT-----------------------------------------------------------------------------------------------------
#=GS Ram5/1-189 DE ASCM01000088.1:c182273-182084 Cryptococcus gattii VGII Ram5 cont1.88, whole genome shotgun sequence
Ram5/1-189                    ------------------------------------------------TAAAACCAACCTCGATGCACCG-TATAGCGGTGCTCTCTCCCCCCG--------AATCTTTTACGGG-------ACGG-----TGAGAAACGGAGCGGGGTAAGAGTGATGT-------------TCTAGCGGGTTGATCTGCTACGCACTTTCT-------GTGCTTGGATAATGG-------TTACTGATTGTTTTTAAAAGTCAGTAAT---TCATTGGGAT-ACTCGACATAATTTC---------------------------------------------------------------------------------------------------
#=GS CryGC3/1-338 DE JALPCB010000001.1:324256-324593 Cryptococcus sp. GC_Crypt_3 iso00_45_1, whole genome shotgun sequence
CryGC3/1-338                  -----------GCCCAAAATCAATTTTGTACAAACTATTTTGATGGCTCTCATCACACCCCGATGC-TCGAACTAGTCGAGCTCTCTCCCCTCGCG-------TCTCGTATCGGGACCATTCACGAGAAGGGGAGAAACGGAGCGGGGTGAGAGAGACGA------------TATGTTCT--TTGTCCATGAGC-GATCTC----GGTC-GTTTGTGGATGTCAATAA----TTGCGGACTGG-TCGATAGACGATCAGCCCGGATGGAGGAT--ATCGACATCTATCTTAGCTTTCTTCTTCGCTTCCTCTGTGGAGTGGATGCTACCGACTATGCATATGTGCAATGAAGTATGGAATATAAAATTACAACAAGGTCGATTG----
#=GS CryGC5/1-335 DE JALPBZ010000087.1:63264-63598 Cryptococcus sp. GC_Crypt_5 iso00_58_87, whole genome shotgun sequence
CryGC5/1-335                  --------------CCCAAAATCAATTTTGAACAAACTATTTTGATAGCTCATCACACCCCGATGC-TCGAACTAGTCGAGCTCTCTCCCCTCGCG-------TCTCGTATCGGGACCACTCACGAGAAGGGGAGAAACGGAGCGGGGTGAGAGAGACGA------------TATGTTCT--TTGTCCACGAG-CGATCTC----GGTC-GTTTGTGGATCTCAACAA----TTGCGGATTGG-TCGATAGACGAGCAGTCCGGATGGAGGAT--ATCGACATCTATCTTAGCCTTCTTCTTTGCTTCCTCTGTGGAGTCGATGCTACCAACTATGCATGTATGCAATGAAGTATGGAATATAGAAATACAACAAGATCAACGA----
#=GS CryGC7/1-331 DE JALPBX010000004.1:296870-297200 Cryptococcus sp. GC_Crypt_7 iso00_79_4, whole genome shotgun sequence
CryGC7/1-331                  ---------------------AAAATCAGTCGTCCACTTTCATAGTGCAGCATCACACCCCGATGC-TCGAACTAGTCGAGCTCTCTCCCCTCGAGTCCTATACTTTGTATCAGGACCATCCACGAGAAGGGGAGAAACGGAGCGGGGTGAGAAGGACGA------------TATGTTCT---TGTCCATAAGACGATCTC----GGTCGTTTTGTGGCTGATAATT-----GCGGATTGGTC-GTGCTAGACGATCAACACGGATGGGAGAT--ATCGACATTATCACTTCCTTCACTGCTTCTCTTGGGAGTGGTCAACCATGCATATATGCAGTATGCAGAACATTGCAGATATAAGATTACAACAAGGTTAATAGC--------
#=GS CryWin/1-213 DE AWGH01000019.1:c244892-244679 Cryptococcus wingfieldii CBS 7118 supercont1.19, whole genome shotgun sequence
CryWin/1-213                  ------------------------------------------------CTCCTCCAACCTCGATGCACTG-TCTAGCGGTGCTCTCTCCTCCCG-----ACAAAACTTTTACGGG-------ACGG----ACGAGAAACGGAGCGGGGTGAGAGTAATAT-----GGGCTGGACTGGTCTGGTGGAAATGCCTTGGCCCTC---GGGTTGGGGCTTGGAAACTGG-TTTTCGTTGCTGTGAGCCTTTGGGCGTGAGCAGTGATGAC-TGGGATGACTCGACATTTCTA----------------------------------------------------------------------------------------------------
#=GS CryFlo/1-212 DE RRZH01000011.1:988847-989059 Cryptococcus floricola strain DSM 27421 chromosome 10, whole genome shotgun sequence
CryFlo/1-212                  ------------------------------------------------CTCCTCCAACCTCGATGCACTG-TCTAGCGGTGCTCTCTCCTCCCG------ACAAACCTTTACGGG-------ACGG----ACGAGAAACGGAGCGGGGTGAGAGTGATAT-----GGGCTGGACTGGTCTGGTGGAAATGCCTCGGCCTAT---GGGTTGGGGCTTGGAAACTGG-TTTTCGTTGCTGTGAGCCTTTGGGCGTGAGCAGTGATGAC-TGGGATGACTCGACATTTCTA----------------------------------------------------------------------------------------------------
#=GS CryAmy/1-217 DE MEKH01000010.1:866385-866602 Cryptococcus amylolentus CBS 6273 supercont2.10, whole genome shotgun sequence
CryAmy/1-217                  ------------------------------------------------CTCCTCCAACCTCGATGCACTG-TCTAGCGGTGCTCTCTCCTCCCG----ACAAAACTTTTTACGGG-------ACGG----ACGAGAAACGGAGCGGGGTGAGAGTGATAT-----GGGCTGGACTGGTCTGGTGGAAATGCCTTGGCCCTTCTTGGGTT-GGGCTTGGAAACTGGTTTTTCGTTGCTGTGAGCCTTTGGGCGTGAGCAGTGATGAC-TGGGACGACTCGACATTTCTA----------------------------------------------------------------------------------------------------
#=GS KwoShan/1-214 DE NQVO01000008.1:240394-240607 Kwoniella shandongensis strain CBS 12478 scaffold00008, whole genome shotgun sequence
KwoShan/1-214                 -------------------------------------------TCTCTTCTTCTCAACCTCGATGCACT---TTAGCAGTGCTCTCCCCCCTC-----ATAACAA---TTACG---------ACGAGGAAGGGAGAAACGGAGCGGGGTGAGAGTGAAG-------ATATAGAGTTGTCTG----CTTCTTTTGGATGCTTGCGTCGAAAAGGAGTAGAAAGTG------CGT-ATCGCTTTTTTAC---CGATTTGGTGATACGGTAAGGATGACTCGACATACCATGATTATGAAT------------------------------------------------------------------------------------------
#=GS KwoMan/1-201 DE ASQF01000038.1:595989-596189 Kwoniella mangroviensis CBS 8886 cont1.38, whole genome shotgun sequence
KwoMan/1-201                  ------------------------------------------------TTCAACAAACCTCGATGCATCGATTCAGCGGTGCTTTCCTTCCTC-------AACCA-TATATC----------ACGAGCAAAGGAGAAACGGAGCGGGGTGAGAGAGAACT------TTATAGAGTAGTCTAATGAGATCTTTTTGAAGATCTTGTAATATTGCTTCTTCAACTG-----------------TTTTATTTGGGTTATTGAAGAAGGTGATGGAC-ACTCAACATCGCCATAA-------------------------------------------------------------------------------------------------
#=GS KwoBes/1-218 DE ASCK01000014.1:320360-320578 Kwoniella bestiolae CBS 10118 cont1.14, whole genome shotgun sequence
KwoBes/1-218                  ------------------------------------------------CTCAACAAACCTCGATGCATCGACTCAGCGGTGCTTTCCTTCCTC-------ACCCA--TTATA----------ACGAGTAAAGGAGAAACGGAGCGGGGTGAGAGAGAACC-----TATATAGAGTAGTCTTGGGA--TCTCTT-GACTTTTGTTGGG-AC-GA-TCTGCAAATATTGCTGCTTCAACTTGTGTTTACACTGGTTATTGAAGGAGGGAATGGAT-ACTCGAAATTACAAAATTGCTAT-------------------------------------------------------------------------------------------
#=GS CryVH5/1-292 DE JANBXI010000052.1:c20427-20136 Cryptococcus sp. VH57_BW 52, whole genome shotgun sequence
CryVH5/1-292                  --------------------------------------------CTCTCCTCCCCAACCTCGATGCGCCGAA-CCGCGGTGCTCTCCCCCCCC--------ACAC--TTCAC----------ACGGGGGCGGGAGAAACGGAGCGAGGTCAGAGCGAGAGTGGGTCCGTTTCCTGGTCCTGGTGCGTGCCGTCTGTTTTTACTTGTAAGGGTAGGCGGGGCGGGCTGGGAGTTGCGTTGCTGCGTTGGTTTGAGCGCTGGTGATGGGCAGGGGGGCCTGACATCTTTTTGATTGTACGTATGTTGTATTTTGTCCGGCTTGCAATGGAATAGAACAGACCAATGCATGCAATGTACA-------------------------------
#=GS CrySki/1-333 DE BCHT01000002.1:1506016-1506348 Cryptococcus skinneri DNA, scaffold: scaffold_1, strain: JCM 9039, whole genome shotgun sequence
CrySki/1-333                  CAAGCGCTTGCAGGCCTTACAAAATACTCCGCCGTCAAAGTGGTACGCTTTCTTCATCCCCGATGCATT----CAGAAATGCTCTCTT--CATGC------TTTACTTGCTTGGG-------ACGA-----GGAGAAACGGAGCGGGGTCAGAGAGAGATGAG-CTGTCAGTGAAGTGACGATTTAGGTCGTTGGCTTCGTTAGATTGTACGCGTCGGACACA------------TCGTCGGCGTGG----------------TCAGCTGAA--GCTGGACACAACTTAGCATGTATTGGGAATAGTTCTGTTGCTTCTTTCCACTGGTAACATTGGCTATGCAATGTACTCGTACTGTGTACGCATTGTGACCTTAGAGACGATCAT
//

• Image source 7.1:

# STOCKHOLM 1.0
#=GF RW van Nues, September 2023
#=GF https://coalispr.codeberg.page/paper
#=GS HACAcnag03509-upstream-CNG00840/1-217 DE ncrna 7:231865:232080:1 AE017347.1:231866-232080 Cryptococcus neoformans var. neoformans JEC21 chromosome 7 sequence
HACAcnag03509-upstream-CNG00840/1-217         ---CATACACAATCAACTCTGGCTTATACCATAACACCTTCTCTCACAAAAAA--TGCCATAGAAGGGCTA-GTTTAATGGCGCCGGAGAAGATGGACTGTTTTACAA--GG----AGCCTGTTTAAAATGCGTCCCTTGTTTTTACGTGT---TGCCCGTGTTTTCCTGTTT----ACAGGGGACGTGTGCGGCATCG---ATGTGCGGGGGGGGTTTCGCTTAGGGCTTACACTA-------------------------------------------------------------------
#=GS CP003827.1:c1150122-1149900/1-223 DE Cryptococcus neoformans var. grubii H99 chromosome 8, complete sequence
CP003827.1:c1150122-1149900/1-223                ----TCCACACATCAACTCTGGCTTATACCATAACACCTTCTCTCACAAAAAA--TGCCATAGAAGGGCTA-GTTTAATGGCGCCGGAGGAGAGTGACTTTGTAAAAA-GGG----AGCCTGTTTAAAATGCGTCCCTCGTTT------GTTCATC---------------------------------------------------TGGGGGAGGTTTCGCTTAGGGCTTACACTGTTTTGTATCGTGTCTTGCGTTGTGTTGTCCATGTATTGTGTGTTTGAAAAGTATC------------
#=GS CNAG_03509-upstream/1-169 DE pyruvate dehydrogenase X component CP003827.1:c1150119-1149951 Cryptococcus neoformans var. grubii H99 chromosome 8, complete sequence
CNAG_03509-upstream/1-169                        ------CACACATCAACTCTGGCTTATACCATAACACCTTCTCTCACAAAAAA--TGCCATAGAAGGGCTA-GTTTAATGGCGCCGGAGGAGAGTGACTTTGTAAAAA-GGG----AGCCTGTTTAAAATGCGTCCCTCGTTT------GTTCATC---------------------------------------------------TGGGGGAGGTTTCGCTTAGGGCTTACACTGTTT----------------------------------------------------------------
#=GS WM276/1-224 DE CP000292.1:c1097258-1097035 Cryptococcus gattii WM276 chromosome G, complete sequence
WM276/1-224                                      ----CATACACATCAACTCTGGCTTATACCATAACACCTTCTCTCACAAAAAA--TGCCATAGAAGGGATA-GTTTAATGGCGCCGGAGAAGACTGACTCTCAAAAAAGGGG----AGCCTGTTTAAAATGCGTCCCTCGTCTTGTGTGGATCGTGCAAACCGTTCTGTCCCTCGT-GGCAGGATGGTGGGCAAGGTTGCATATGTGTGGGGGAGGTTTCGCTTAGGGCTTACATT--------------------------------------------------------------------
#=GS R265/1-220 DE CP025765.1:c1027971-1027752 Cryptococcus gattii VGII R265 chromosome 7, complete sequence
R265/1-220                                       ----CATACACATCAACTCTGGCTTATACCATAACACCTTCTCTCACAAAAA---TGCCATAGAAGGGATA-GTTTAATGGCGCTGGAGGAGACTGACTCTCAAAAA-GGGG----AGCCTGTTTAAAATGCGTCCCTCGTTTTGTGTGAATC-TGCAAATCGTTCTGTCCCTTGTGGGCAGGATGGTGTGCAAGTTTGCATATG--TGGGGGAGGTTTCGCTTAGGGCTTACACT--------------------------------------------------------------------
#=GS CryAmy/1-185 DE MEKH01000002.1:1822144-1822328 Cryptococcus amylolentus CBS 6273 supercont2.2, whole genome shotgun sequence
CryAmy/1-185                                     -CTTTACACATAACAACTCTGGCTTAAACCATAACGTCTTCTCACACACAAATATTACCCCACAGATGACACGTTTAATGGCGCCGGAGGAGAGGAAACCCACTATTTAAAGTAGTAGCCTGTTTATAATACTT------------------------GTCCGATATGCCTCTCGCGGG---------------------------GTGGAT-AGGTTTCGCTTAGGGCTGACATACC------------------------------------------------------------------
#=GS CryFlo/1-190 DE RRZH01000001.1:c424250-424061 Cryptococcus floricola strain DSM 27421 chromosome 1, whole genome shotgun sequence
CryFlo/1-190                                     TCTTTACACATAAAAACTCTGGCTTAAACCATAACGTCTTCTTACACACAAATATTACCCCACAGATGACACGTTTAATGGCGCCGGAGAAGAGGAACCCCACTATTTAAAGTAGTAGCCTGTTTATAATACTT------------------------GTCCGATATGCCTCTCGCGGG---------------------------GTGGAT-AGGTTTCGCTTAGGGCTGACATACCAATC--------------------------------------------------------------
#=GS CryWin/1-185 DE AWGH01000020.1:63731-63915 Cryptococcus wingfieldii CBS 7118 supercont1.20, whole genome shotgun sequence
CryWin/1-185                                     -CTTTACACATAAGAACTCTGGCTTAAACCATAACGTCTTCTTACACACAAATATTACCCCACAGATGACACGTTTAATGGCGCCGGAGAAGAGGAAACCCACTATTTAAAGTAGTAGCCTGTTTATAATACTT------------------------GTCCGATATGCCTCTCGCGGG---------------------------GTGGAC-AGGTTTCGCTTAGGGCTGACATACC------------------------------------------------------------------
#=GS KwoSha/1-260 DE NQVO01000002.1:c568334-568075 Kwoniella shandongensis strain CBS 12478 scaffold00002, whole genome shotgun sequence
KwoSha/1-260                                     ---CCTTACACATCAACTCTGGCTTAAACCATAGCGACATCTTTTCGCCTCCATAGATGAACAAAATTCGAC--TTAATGGCGCTGGAGAAGATTGACTCAATACACAAGAG----GGCCTGTTTATAATACGTCCTTTT----------------------GAGGTTGG---CGGCTTCACGTCGTGG----------ACCAATAAGGGGGGACGATTCGCTTAGGGCATACATATAATTACGTTTTGTTTTGTTGGATATGAATGTATGATCTTGGTTGTGAGTGATGTGTTGTGCTTCAAT
//

• Image source 7.2:

# STOCKHOLM 1.0
#=GF RW van Nues, September 2023
#=GF https://coalispr.codeberg.page/paper
#=GS HACAcnag12764/12-176 DE ncrna 7:552741:552905:1
HACAcnag12764/12-176              ----------------------------------------------------------------------------------------------------------------ACACCTCCATTCCCCTACATTACGGG---------AACTGT---TAG----CTTCTAATAG-ATGCT--TTCCTC-AGTTGGGA---------------------------------------------------------------TAGAGG-----------------------------------------------------TAGAGAGA----AAGGGAATAAGACACCTGT-------AGCTCACGTATCTCCCGTCTCCTTTGATTCGTTCA----------GTGGGGAGATGGGTCGAAGA-GGGGCGAACATAA--------------------------------------------
#=GS CNAG12674-expressed/1-209 DE CP003827.1:c824620-824412 Cryptococcus neoformans var. grubii H99 chromosome 8, complete sequence
CNAG12674-expressed/1-209         ----------------------------------------------------------------------------------------------------------------ACACCTCCACTCCCCCACATCACGGG---------AACTGT---TAG----CTTCTAAAAG-ATGCT--TTCCTC-AATTGGGA---------------------------------------------------------------TAGAGG-----------------------------------------------------TAGAGAGA----AAGGGAATAAGACACCTGT-------AGCTCACGTATCTCCCGTCTCCTTTGATTTGTTCA----------GTGGGGAGATGGGTCGAAGA-GGGGCGAACATAAAACCTCTATGTTGAAGAATGGATCATGTTGCTTTGGGTGAAAGA
#=GS from-CNAG_12764/1-167 DE CP003827.1:c824620-824454 Cryptococcus neoformans var. grubii H99 chromosome 8, complete sequence
from-CNAG_12764/1-167             ----------------------------------------------------------------------------------------------------------------ACACCTCCACTCCCCCACATCACGGG---------AACTGT---TAG----CTTCTAAAAG-ATGCT--TTCCTC-AATTGGGA---------------------------------------------------------------TAGAGG-----------------------------------------------------TAGAGAGA----AAGGGAATAAGACACCTGT-------AGCTCACGTATCTCCCGTCTCCTTTGATTTGTTCA----------GTGGGGAGATGGGTCGAAGA-GGGGCGAACATAAAA------------------------------------------
#=GS pre-HACAcnag12764/1-230 DE AE017347.1:552712-552941 Cryptococcus neoformans var. neoformans JEC21 chromosome 7 sequence
pre-HACAcnag12764/1-230           -----------------------------------------------------------------------------------AAGCGTTTCAAGTTTCATTCCCTTTTCTCACACCTCCATTCCCCTACATTACGGG---------AACTGT---TAG----CTTCTAATAG-ATGCT--TTCCTC-AGTTGGGA---------------------------------------------------------------TAGAGG-----------------------------------------------------TAGAGAGA----AAGGGAATAAGACACCTGT-------AGCTCACGTATCTCCCGTCTCCTTTGATTCGTTCA----------GTGGGGAGATGGGTCGAAGA-GGGGCGAACATAAAACCACCATGTTGAAAAATGGATGATTATTATGTTG--------
#=GS WM276/1-177 DE CP000292.1:c791340-791164 Cryptococcus gattii WM276 chromosome G, complete sequence
WM276/1-177                       ----------------------------------------------------------------------------------------------------TCCCTTTTCTC-ACACCTCCGCTCCCCCACTTTACGGG---------AACTGT---TAG----CTTCTAATAG-ATGCT--TCTCTC-AGTTGGGA---------------------------------------------------------------TAGAGG-----------------------------------------------------TAGAGA-A----AAGGGAATAAGACACCCGT-------AGCTCACGTATCTCCCGTCTCCTTTGATTTATTCA----------GTGGGGAGATGGGTCGAAGA-GGGGCATACATGAAA------------------------------------------
#=GS R265/1-178 DE CP025765.1:c722943-722766 Cryptococcus gattii VGII R265 chromosome 7, complete sequence
R265/1-178                        ----------------------------------------------------------------------------------------------------CCCTTTTTCTC-ACACCTCCACTCCCCCACATTACGGG---------AACTGT---TAG----CTTCTAATAG-ATGCT--TCTCTCAC-TCGGGA---------------------------------------------------------------TAGAGG-----------------------------------------------------TAGAGAAA----AAGGGAATAAGACACCCGT-------AGCTCACGTATCTCCCGTCTCCTTTGATCTGTTCA----------GTGGGGAGTTGGGTCGAAGA-GGGGCATACATAAAA------------------------------------------
#=GS CryVH5/1-303 DE JANBXI010000022.1:c176244-175942 Cryptococcus sp. VH57_BW 22, whole genome shotgun sequence
CryVH5/1-303                      -----------------------------CGCTCCGCTGTCCGCCACGTGGCCCCCGCCGCCCAGCCGCCACACTACCCCACCGCAAATGCCGCACGTAACCCCGCCGCC--ACATCCTTAT--GCGCCCATCC-------------AACTGC--------CTCCCCTCCTCCTCTGCATACCTCCCCGGCCGTG--------------------------------------------------------------TCAAGAGTCGCCCATCGCCTCGCGCGCAAGCCGGACGACTCTGTAACAGGCGATGGGACGAGGGAGAGGCA--AGGGGATTAAGACCCCCGT-------AGCTCACGTATCTCCCGTCTCCTTTGACTTCGGTTG---------GTGGGGAGATGGGTCGAAGA-GGGGCATACATACATC-----------------------------------------
#=GS CryGC4/1-290 DE JALPCA010000101.1:11048-11337 Cryptococcus sp. GC_Crypt_4 iso00_46_131, whole genome shotgun sequence
CryGC4/1-290                      ----------------------------------------------------------GGCTTTTCCAACTCCAAGCCAAATTTCCAATCTCGCACCTAGGGCTGTATTCATCAATCCTCAATCC--GCCCTTTCAG----TCTCTACACCACAG-----------CATATAG--TGAT--CTC-----TCTGG---------------------------------------------------------------TCAATCTC---CGGATGACTTGTAGTGAGGTGACATTGCTATGTACGTGGGAGA-CTGAAGGGAAGACG-----ATTTAGGTCGTACTTTTAATCCA--AGCTCACGTATCTCCTGTTCCTTCTGCCCTTGAGAGGGAGTC---GTGGGGGGATGGGTCGAAGA-GGGGCAAACAGATTGGTCTGTAGAATGTTG---------------------------
#=GS CryGC2/1-279 DE JALPCC010000005.1:42970-43248 Cryptococcus sp. GC_Crypt_2 iso00_70_5, whole genome shotgun sequence
CryGC2/1-279                      --ATTGCTGGTTGCTTCCGTGTGAACGCAGGTTAGGCTCATCACCCAGTGACCAAGATAGGCGTGTGGGAGATGGTACGGCAGTTTGGCGTAATGTTTGAAATGCTTCTATCACATCTCTCGCAGGGCGTCTTAGGGG---------CATCTAC-------TTGGCTCTTTTGGTCGCG-----------CTGGG-----------------------------------------------------------------GGAGG-----------------------------------------------------TAGAATCA-----AGTCGGATTGACGTCTGACAA----AGCTCACGTATCTCCTGTCGTTTCTCTTATTTTC-----------GTGGGGCGATGGGTCGAAGTT-GGGCATAAATATATTTATCGGATT--------------------------------
#=GS CryFlo/1-200 DE RRZH01000001.1:c175439-175240 Cryptococcus floricola strain DSM 27421 chromosome 1, whole genome shotgun sequence
CryFlo/1-200                      ------------------------------------------------------------------------------------GATCTCACTCAAGCGCCGCTCTCTCTATACATCTCCTCCCGGAAAGCTCATAAG---------GACTGTGCATAGACATCCCCT-----CGCGCGTTTCCTTCAGGCCGGG--------------------------------------------------------------TCAAGAGG-----------------------------------------------------TAGACTCA----AAGGGCGTAAGACCCCCGT-------AGCTCACGTATCTCCTGTCTTCTCTGAACCTCGTTCA--------GTGGGCAGATGGGTCGAAGA-GGGGCATACAT----------------------------------------------
#=GS CryAmy/1-202 DE MEKH01000002.1:2066218-2066419 Cryptococcus amylolentus CBS 6273 supercont2.2, whole genome shotgun sequence
CryAmy/1-202                      -----------------------------------------------------------------------------------AGATCTCCTTCAAGGGCCGCTCTCTCTAT-CATCTCCTCCCGGAAAGCTCATAAG---------GACTGTGCATAGACGTCCCCT-----CGCGCGTTTCCTTCAGGCCGGG--------------------------------------------------------------TCAAGAGG-----------------------------------------------------TAGACTCA----AAGGGCGTAAGACCCCCGT-------AGCTCACGTATCTCCTGTCTTCTCTGAACCTCGTTCA--------GTGGGCAGATGGGTCGAAGA-GGGGCATACATTT--------------------------------------------
#=GS CryWin/1-202 DE AWGH01000020.1:302357-302558 Cryptococcus wingfieldii CBS 7118 supercont1.20, whole genome shotgun sequence
CryWin/1-202                      ------------------------------------------------------------------------------------GATCTCACTCAAGGGCCGCTCTCTCTATACATCTCCTCCCGGAAAGCTCATAAG---------GACTGTGCATAGACATCCCCT-----CGCGCGTCTCCTTCAGGCCGGG--------------------------------------------------------------TCAAGAGG-----------------------------------------------------TAGACTCA----AAGGGCGTAAGACCCCCGT-------AGCTCACGTATCTCCTGTCTTCTCTGAACCTCGTTCA--------GTGGGCAGATGGGTCGAAGA-GGGGCATACATTT--------------------------------------------
#=GS CryGC5/1-280 DE JALPBZ010000034.1:17151-17430 Cryptococcus sp. GC_Crypt_5 iso00_58_34, whole genome shotgun sequence
CryGC5/1-280                      -----------------------TACCGATCAAAACGCCTCAAGCATTCGGCCTCCACTCCAGCTCAATCACCTAGCCACGCAGTGCAGTTGAAATATTGTTATTGTTGCGTACTGTCTCTCTTCTCTCTA---CAAC--------AAAC-------------------------------CTTTCCACTATTGG---------------------------------------------------------------CAAGAG--------CCGTCTTGCTTCA-CAGCGATAGTCGGCTCTACA-------------TGCGTGG---AAAGGCAGAGAGATCATTATAATAT--AGCTCACGTATCTCCTGTCTCTTCTGGTCTCTCAGCAGGCTTTA-GTGGGGGGATGGGTCGAAGA-GGGGCACACATATTC------------------------------------------
#=GS CryGC3/1-290 DE JALPCB010000215.1:29888-30177 Cryptococcus sp. GC_Crypt_3 iso00_45_215, whole genome shotgun sequence
CryGC3/1-290                      ---------------------ATCACCGATCAAAACGCCACAAGCACCCAACCTCCACTCCACGTCAATCACCTTGCCACGCAGTGCACTTGAAATATTGCTGTTGTTGCATACTGCCTCT--TCTCTTCA---CAAC--------AGAC-------------------------------CTTTTCACAATTGA---------------------------------------------------------------CAAGAG--------CCGTCTTGCTTCA-CAGCGATAGTCGGCTCGACA-------------CGCATGA---GAAGGCAGAGAGATCATTATTACAT--AGCTCACGTATCTCCTGTCTCTTCTGGTCTCTTAGCAGGCTCTA-GTGGGGGGATGGGTCGAAGA-GGGGCACACAAATTCAACGTACAAA--------------------------------
#=GS CryGC7/1-291 DE JALPBX010000015.1:124103-124393 Cryptococcus sp. GC_Crypt_7 iso00_79_15, whole genome shotgun sequence
CryGC7/1-291                      -------------AACGCCACAACCACTTGAACCTCCACTCCAGCTCTCAACCACGATGCCACGCCGTGCAC---GCAGTG-AGTGTACTAGAAATG------TTGGTTCATACTTACTCTTGTCTC--TA---CAAC---------AAATGAC---------------------------CTTTTCACAATTGG---------------------------------------------------------------CAAGAG--------CCGTCT-GCTTCA-CAGCGATAGTCGGCTCTACA-------------TGCAGGA---AAAGGCAGAAAGATACTTATAATAT--AGCTCACGTATCTCCCGTCTCTTCTGGTCTCATAGCAGGCTTAACGTGGGGGGATGGGTCGAAGA-GGGGCATACAATTCTATAGTACCAA--------------------------------
#=GS TriCor/1-269 DE JXYL01000050.1:c59468-59200 Trichosporon coremiiforme strain JCM 2938 scaffold_0050, whole genome shotgun sequence
TriCor/1-269                      -------------------------------------------------------GCCTGGGGGGAGGATAAAGGGAGAAAAACCTGTGCATGGATG---TTCTTTCTC-CTACACCTCTCCTATTCCGTTTTGCGGCC-CATTGCT--CGATGGCCCA--------TCAACG--TGCT---------AATTGGGA-------------------------------------------------------------GGTAGATGAA--CCAGCTGGTGC-CCG-TATGGTCCAG-AGGCTTGAAC--CCGAGAGGGATCGCCCGA----GGGCCGG-GCGCTGGTTGACCGA---GGCTCACGTATCTCCCGCCTCTTCTTCTC----------------GTGGAGAGGTGGGTCGAAGA-GGGGCACACATTTCATTCTTG------------------------------------
#=GS TriAsa/1-269 DE SCGW01000165.1:c34473-34205 MAG: Trichosporon asahii isolate N5_275_008G1 N5_275_008G1_scaffold_234, whole genome shotgun sequence
TriAsa/1-269                      -----------------------------------------------------------AGTCGCCAGGCAGGGAGGATAAAATCTGTGCATGGAGGAGTTCTCTTCTCTCTACACCTCTCCTATTCCGTTGTGCGGCC-CAGTGCT--CCGTGGCCCA--------TCAACG--TGCT---------AATTGGGA-------------------------------------------------------------GGTAGATGAA--CCAGCTAGTGC-CCG-TATGGTCCAG-AGGCTTGAAC--CCGAGAGGGATCGCCCGA----GGGCCGG-GCGCTGGTTGACCGA---GGCTCACGTATCTCCCGCCTCTTCTTCTC----------------GTGGAGAGGTGGGTCGAAGA-GGGGCACACATTTCCAAGTCT------------------------------------
#=GS TriInk/1-269 DE JXYM01000003.1:c2106923-2106655 Trichosporon inkin strain JCM 9195 scaffold_0003, whole genome shotgun sequence
TriInk/1-269                      --------------------------------------------------------ACCTCGCCCTCCCGCACCTCAAAAGAAAAT-CTCTTGCGCTCGTCG---TCT-TCTACACCTCTCCTATTCCGTTGTGCGGCCTTTTTGCT--CTGTGGCTCA--------CCAACG--TGCT---------AATTGGGA-------------------------------------------------------------GGTAGAAGAA---CAGCAGGTGCTCCG-CATGGCCCAG-AGGCTTGAAC--CCGGAAGGGATCGCCCGA----GGGCTGGGGCGGCTGCTGATGGA---GGCTCACGTATCTCCCGCCTCTTCTTCTC----------------GTGGAGAGGTGGGTCGAAGA-GGGGCACACATCTGTAGCGTT------------------------------------
#=GS TriOvo/1-269 DE WEIQ01000029.1:183766-184034 Trichosporon ovoides strain 2NF903A scaffold29-size595818, whole genome shotgun sequence
TriOvo/1-269                      ------------------------------------------------------------CTGCCCGGGCCGCATAAAAGCAAAACTGGAGTGCGTGTCTCGTCTCTTCTCCACACCTCTCCTATTCCGTTACGCGGCCTTTTCGCT--CTGTGGCTCG--------TCAACG--TGCT---------AATTGGGA-------------------------------------------------------------GGTAGAAGAA---CAGCAGGTGTCCCACTATGGCCTA--AGGCTTGAAC--CCGAGAGGGATCGC-CGA----GGGTTGGGGCGCCTGTTGATAGA---GGCTCACGTATCTCCCGCCTCTTCTTCTC----------------GTGGAGAGGTGGGTCGAAGA-GGGGCAGACATTTCCATCGCA------------------------------------
#=GS TriGue/1-264 DE BCJX01000003.1:c1791573-1791310 Trichosporon guehoae DNA, scaffold: scaffold_2, strain: JCM 10690, whole genome shotgun sequence
TriGue/1-264                      -------ACCCACCGTCTTCAAAACGCGATGCAACCATCGTTGTTTCTTTTCTCCAGCCTCTCCTATTCCGCTCCGGGCAACAGTCGCGACGGCGCCCAGCGTCTGTCGCCGACACCTC------ACAG---CCCGGG-----------CCGCG---------------------TGCT---------AATTGGGA-------------------------------------------------------------GGCAGAG-------------TG-------ACGGCG----CGGAT--CCC--TCGTCTT-GCTCGC---A----AGGTGGGGTCGAGCCGCGTCGCA---CGCTCACGTATCTCCCGCCCTTTCTTTT-----------------GTGGAGGGGTGGGTCGAAGA-GGGGCGGACATGTCGCG----------------------------------------
#=GS TreMes/1-271 DE SDIL01000002.1:200758-201028 Tremella mesenterica strain ATCC 28783 supercont1.2, whole genome shotgun sequence
TreMes/1-271                      ------------------------------------------------------------------------------------------CTGATGCGATCTTGAATGTGGCACCCCTTTTCTGGCAT------CAAACCGCCACATTCAACTTGACACGCGGC------------GTTT-------------GGT--CCAAGACTGCATGACCTAGAGAAGCTACCCGTAACCATCTTGTCATCTCCCCTATTATACCTCATGGCCTGC-------TCTCG-TTTTCGAAG----TGG-----------ATCAGTGCCAACTTA-----GGGGAGACAGAGTATCTCTAG-----AGCTCACGTATCTCCCGTCTCTTCTTTATA---------------ATGGAGGGCTGGGTCGAAGA-GGGGCTTACATCGTAAAATAT------------------------------------
#=GS TreTag/1-287 DE CAJHEQ010000079.1:c13623-13337 MAG: Tremellales sp. Tagirdzhanova-0007 genome assembly, contig: TREM_79, whole genome shotgun sequence
TreTag/1-287                      ------------------------------------------------------------------------------------------------GCCACGCGGCTCATGATCATCATCCC-TTTCCAAA---TTTGTTTTTGGCAACGAGCGAGGGGGAGGC--------------------------CAGGGC-------GCTAATCAAATTTAAATTCTCCCTTAAAATTTACAAATCACCCTCAGACCGAAACGCAGAGCCGATGTTCCGCATCTCGCCGCTTCGTCT--CGCGTGC----------ATCCAATTATGAGAA---GGAGGGGAGAAGGACCAGTGA-----AGCTCACGTATCTCCTGTCCCATCTGCTTTTCAAGCACTTTTGA-GTGGTCGGATGGGTCGAAGA-GGGGCGCACAAGTAAATAGC-------------------------------------
#=GS TreFuc/1-274 DE BRDD01000006.1:c453032-452759 Tremella fuciformis NBRC 9317 DNA, KCNB80TF.6, whole genome shotgun sequence
TreFuc/1-274                      ------------------------------------------------------------------------------------------------ATCAAATCCTTCTGCCACATCACCCCAAATCCCAT---CGGCGTTTCTTCCCCCTGGCCCCCCCCC----------------------------CCGGGT-----GCCACAAAGAGACAACGATGTGTGCTGTTTCCCTCAGCATCTCCCGGCGTCATCCATAACGAGCT-------CTTCACTCTATCAGCGGAT-----GGAGCGATCA--CGACGCCAGGAGAGAGAGC--GGAGGGGTCATTCATCCTTGT-----AGCTCACGTATCTCCCGCCTCTTCTCGTTTC--------------GTGGAGGGGTGGGTCGAAGA-GGGGCGTACAATGCAATCCA-------------------------------------
#=GS TreYok/1-274 DE BRDC01000032.1:486356-486629 Tremella yokohamensis NBRC 100148 DNA, KCNB35TY.32, whole genome shotgun sequence
TreYok/1-274                      -------------------------------------------------------------------------------------------TGACTATCAAATCCATCTGCCACATCACCCCAAATCCCAT---CGGCGTTTCTTTCCCCTG--------------------------------------CCGGGTCTGCTGCCACATAGAGACAACGACGTGTGCTGTTCCCTTCAGCAATCTCCAGCGTCATACATAACGAGCT-------CTTCACTCTGTCAGCGGG-----TGGAGCTATCA--CGACGCCAGGAGAGAGAGC--GGAGGGGTCATGGATCCTTGT-----AGCTCACGTATCTCCCGCCTCTTCTCGTTTC--------------GTGGAGGGGTGGGTCGAAGA-GGGGCGTACAATACAAATCA-------------------------------------
#=GS KwoSha/1-314 DE NQVO01000002.1:c768673-768360 Kwoniella shandongensis strain CBS 12478 scaffold00002, whole genome shotgun sequence
KwoSha/1-314                      ------CCACACTCGTTCATCTATCTCCAAACTCCTAAATTCCGTCTGTACAACGACCAACGGTCAGCTCACCGTGCATCCACGTCCACTCACTCAAAACTACCAAGTTGT-ACATGTCCTTCTTCTCCCTTCCCCTCACACCTCCCCATACTCGA-------------------------------TAAT-AGGATCGACTCGTTCTTTCGTC------------------------------------------TTGACGATTCTTC-----GTGTGAATATTGTGGGATT------------------GAAGAGGGAGAAGGA----AAGGGTTTAAGACTCCCGT-------AGCTCACGTATCTCCCGCCTCCTTTTTATTTGC------------GTGGGGAGATGGGTCGAAGA-GGGGCATACATATTGACTAG-------------------------------------
#=GS KwoMan/1-285 DE ASQF01000014.1:844724-845008 Kwoniella mangroviensis CBS 8886 cont1.14, whole genome shotgun sequence
KwoMan/1-285                      --------------------------------------CACTTTATGCCACGCACGATACCTCCCCTCTCGAACGGTAGTGCTGCTGTGCCAGCACTAGAAATTTTCAACCTACGCAACCTTCTTTTCTTCTCCCTCTACG--TCGCCTTCTGGC----------------------------TTTTCAATATGGGTCGATAGTCTATCTGGTA--------------------------------------------GTCGATC---------------------TTGGATT-GGGCG----------AAAGAAGGGGAGAAAGA------CAGGATGTGACAATTCAA------AGCTCACGTATCTCCCGTCTCCTTTGGTTTTGTTAAACGAAACTGGTGGGGAGATGGGTCGAAGA-GGGGCAAACATTCATAGATT-------------------------------------
#=GS KwoMan-b/1-286 DE ASQE01000001.1:725378-725663 Kwoniella mangroviensis CBS 8507 cont2.1, whole genome shotgun sequence
KwoMan-b/1-286                    --------------------------------------CACTTTATGCCACGCACGATACCTCCCCTCTCGAACGGTAGTGCTGCTGTGCCAGCACTAGAAATTTTCAACCTACGCAACCTTCTTTTCTTCTCCCTCTACG--TCGCCTTCTGGC----------------------------TTTTCAATATGGGTCGATAGTCTATCTGGTA--------------------------------------------GTCGATC---------------------TTGGATT-GGGCG----------AAAGAAGGGGAGAAAGA------CAGGATGTGACAATTCAA------AGCTCACGTATCTCCCGTCTCCTTTGGTTTTGTTAAAAGAAACTGGTGGGGAGATGGGTCGAAGA-GGGGCAAACATTCATAGATTT------------------------------------
#=GS KwoDej/1-274 DE ASCJ01000041.1:c35415-35142 Kwoniella dejecticola CBS 10117 cont1.41, whole genome shotgun sequence
KwoDej/1-274                      --------------------------------------------------AAGGTTGAGCCTGTGCAATTTCCAGTCAACGATTGATTAAGATATTCGTGTTGGCTTTCCGT-CCTTCCTCTCCTTTTTCATATCGCCTTCAAG---CTTG----------------------------------TTAACGAGGGGTCGACTTTGCAGCAATGCAATGCATTTGCCGAG---------------------------TCGTCGATCT----------------------GGCATAGT-------------CCAGAAGGGTAGAAGGA-----GGGGATTGTAATACTATCCATCCATAGCTCACGTATCTCCCGTCTCCTCTGGTCGTCAGACTG-------GTGGGGAGATGGGTCGAAGA-GGGGCGAACATCCAG------------------------------------------
#=GS KwoHev/1-282 DE ASQC01000025.1:c30254-29973 Kwoniella heveanensis CBS 569 cont2.25, whole genome shotgun sequence
KwoHev/1-282                      ----------------------------------------------------GCCGCAACCCGGCACACTCACCTCTGCCTTGAAAATTCACCCCTCGCTCCTGTCG-TTGTACCTCTCTTTTCTCTTCCTTCAAGCCTTCCCGCGCTCTACATCCA---------------------------TTTCA--ATGGG-TGTGAG----TCTGGTG---------TCATTC---------------------------TCGTCGATCAGCC--AGAGTCGTC------TTGGACG-CGCGG----------TACGGAGGGGAGAACGA------AAGGATGTGACAGTTCGT------AGCTCACGTATCTCCCGTCCTCTCTTCTATCCGTAGAA-------GTGGGGGGATGGGTCGAAGA-GGGGCAAACATATCATTCGTGT-----------------------------------
#=GS KwoBes/1-305 DE ASCK01000027.1:c491267-490963 Kwoniella bestiolae CBS 10118 cont1.26, whole genome shotgun sequence
KwoBes/1-305                      CGCCACAATACACGATGCTTTATAACTCCGCATCAGAAACCATTCGCCACGAATGCACCGCGAGGTTGGGACTGAGCGGTAGCACCAAAAATTCATTTTAGATGCATCTGCTATCCGTCCTCCTTCT-CCATATAGCCTTCT-A-TGCTTTG---------------------------------TATACAA-GGGTTGATAGATCATTCGGTG--------------------------------------------GTCGATTC--------------------TTC-ACA-AGCTG-----------AGGAAGGTGAGAGAGA------TAGGATGTGACAATTCGG------AGCTCACGTATCTCCCGTCTCCTTTGGTTTTGCTAAACTG-----GTGGGGAGATGGGTCGAAGA-GGGGCGGACATCTTT------------------------------------------
#=GS PapLau/1-271 DE JAAZPX010000036.1:c201010-200740 Papiliotrema laurentii strain IF7SW-F4 scaffold73_cov189, whole genome shotgun sequence
PapLau/1-271                      --------------------GTCACGGACCTTTCACACAACTTTATCCGTTCCCCCCCCGGTTTGTCTCAGCCCCCAAATT---------------ACATTGCCG-------AT-ACCTACCCTTTCATTCTCT-ACACCCTC----TCTCTACGTCT-GCAAAGAGTCGGC--AGCCAG------TCCTCGTGACT-GGT------------------------------------------------------TATGAAACACT-----CGCGCGGCG-----------------TG----------ACGAGAGGGGAGAACGA-----TTCCTGTTAGACGCAGGG-------AGCTCACGTATCTCCCGTCTTCTCTTCAATC--------------GTGGGGGGATGGGTCGAAGA-GGGGCAGACATCCAGTCGAG-------------------------------------
#=GS PapTer/1-273 DE JAHXHD010000482.1:c11115-10843 Papiliotrema terrestris strain LS28 scaffold-481, whole genome shotgun sequence
PapTer/1-273                      ------------------------------------------------------AAACGTTGTTTCAGTAGCCCACATAGTCGACACAAACGACGCATCAAGCGATGTCC--ATCACCTCCTGATCTTTTCACTTCATCCCTC-----GTTCAGCTCATATACGTACGACTGCGAACGAGCTCG----TCCTCGGAT-G-TGTATCGTC-----------------------------------------------AGGAGGAGT------AGTACAG-------------------------------CTACGACGAGGGAAAGA-----CGGACTGGTACCGCTACAAACGGGGAGCTCACGTATCTCCCGTCCTTTCTTACTTC--------------GTGGAGGGATGGGTCGAAGA-GGGGCATACATATTGCGTTCGA-----------------------------------
#=GS CryFla/1-269 DE CAUG01000266.1:2671-2939 Cryptococcus flavescens NRRL Y-50378 WGS project CAUG00000000 data, contig NODE_391_length_126884_cov_46_527451, whole genome shotgun sequence
CryFla/1-269                      -------------------------------------------------------TTCGGTCCCCCGTTTGACGCTAGCTGTTCGCCGGGGCATGCATCAAGCGAAGCCCGTCTCG-CTGATGA-CTTTTCACTTCATCCCTC-----GTTCCGCTCAATCACGTACGACTGCGAGCGAGCGCA----TCTTCGGGT-GATGCTTCGTA-----------------------------------------------AGGAGGAGT------AGTACAG-------------------------------CTATGACGGGGGACAGA-----CGGAATGGTACCGCTATAAACGGGGAGCTCACGTATCTCCCGTCCTTTCTT--CTC--------------GTGGAGGGATGGGTCGAAGA-GGGGCATACATACTGCGATG-------------------------------------
#=GS NaeAur/1-280 DE JAKFAO010000006.1:c1203461-1203182 Naematelia aurantialba strain NX-20 Contig6, whole genome shotgun sequence
NaeAur/1-280                      -----------------CTGCCATATCTTGCCGCCACACGCCAAAAGTCCGTAAAATTTTGCTTCCGCCTTTGTGCCCAATACGACCTGCTCGTCGCCTATTGATTTCCTCCAACTCTCTTCTATTCCGTGAATCTGCGACTC-------------------------------------------TCTTCTCGG---------------------------------------------------------CAGTCTTTCGCGT----GCTATGTTGT-----------------------------AGAGAGAAGGACCACCGC----TTTATCGGTTCAACGACAATGCGG--AGCTCACGTATCTCCTGTCTCTTCTGCGAAATGCC----------GTGGGGGGACGGGTCGAAGA-GGGGCATACAGGCCTCGTATGCATT--------------------------------
#=GS CrySki/1-285 DE BCHT01000005.1:c185854-185570 Cryptococcus skinneri DNA, scaffold: scaffold_4, strain: JCM 9039, whole genome shotgun sequence
CrySki/1-285                      --------------------------------------------------------------CGCCACAAGCGGACAGAGTATTACGTAAAGGATTTCTGCCCCGCCGTCGCACAATATTATCTGGTCTTCAGGTTGTATCTC----------------------GTCTTCTCTCTTCACCCTCGTCGTTTTTGG--CAAGCG--------------------------------------------TTTTCTAGTTACTCGAAGCTGT-CACGCGTGCAACGGCCTATATTCGTATAG----------ATCGAGGGAGAAGAAGG---TTCTCCCAGGAGTATCCGGT-------AGCTCACGTATCTCCCGTTCCTTCTGGCTGTCATATGCTTA----GTGGGGGGATGGGTCGTAAGTTGGGCTGACATTCAGGCT---------------------------------------
#=GS CutDas/1-266 DE BEDX01000004.1:c1136819-1136554 Cutaneotrichosporon daszewskae DNA, scaffold: scaffold_4, strain: JCM_11166, whole genome shotgun sequence
CutDas/1-266                      ------------------------------------------------------------------------AGTCCAGATCGCCGCTTTTCTTATGTCGTCCCCCTGGGTAACAAGTTGCTCTTCAACGCGCAGCATGGAT---------------------GCCTTCTCTGCACCTCTCCTATTCCGCTGCGGGCTCGAATACGCC--------------------------------TGTCTGCGTGCTAAATGGGAGGAAGA----CGGACGGGCAACGCGTTCCCCT------------------GCTGGTGAAAACCAG------TGGGGTTGAGCACCGCGTCTAG---AGCTCACGTATCTCCTGATCCTTCTTCTGCA--------------GTGGGGGGTTGGGTCGAAGA-GGGGCAGACATCTTG------------------------------------------
#=GS VanHum/1-266 DE QKWK01000001.1:2280694-2280959 Vanrija humicola strain CBS 4282 CBS4282_scaffold01, whole genome shotgun sequence
VanHum/1-266                      -----------------------------------------------------------------------------------CGGAACCAATCCCCGCGGCATCTGCCAGCAACCCTCGCACCCGCGCCCTGGTTAAATACC----------AGCCTGGCAA-CGCGCCGCCGTCTCCCCATCCTCGTCTGCACCGCGCCGC----------------------------TGTGCTACCCCGCGGCTGTGGTTCTCACACGAGGCAGAGAGGGCGCGTGGCGATCCCC-----------------------GCTTTCACGAGCGG---------GTCGAACGCCGCGCGCTG---GGCTCACGTATCTCCCGCCCCCTCTTCTT----------------GTGGGGGGGTGGGTCGAAGA-GGGGCATACATTTGTTAG---------------------------------------
#=GS SaiPod/1-280 DE CABVUR010000050.1:246456-246735 Saitozyma podzolica genome assembly, contig: NODE_50_length_377782_cov_22.7599, whole genome shotgun sequence
SaiPod/1-280                      -----------------------------------------------------------------CCCTCGTAATCCCGCTCATAACGCCGCATCCCACCGACACCTGCTATACAACTCCAGCACCCCCCTTCTCCTCCTCCTCACCCTCGCTGATTTGGCAAGCGACATTGCTCGTCATGGTAGCTGTACTCGCGTGCA-------------------------------------------TCGGTTTCGAGGGATAACGAGGCC---GGGGCGC---TCGCGTTGA--------------------CTCGCGGCGGTCCCCGAG-------TCTGGA----------------GGCTCACGTATCTCCCGCTCCCTCTGCCCCGAGTGGGTTAC----GTGGGGGGGTGGGTCGAAGA-GGGGCGGACAACCAACGTAG-------------------------------------
#=GS BulAlb/1-280 DE BCIX01000005.1:579347-579626 Bulleromyces albus DNA, scaffold: scaffold_4, strain: JCM 2954, whole genome shotgun sequence
BulAlb/1-280                      --------------------------------------------------------------------TCCTCATAATGCCCTGACCGCGTTTCACCTAAATTTCCACCACCACCTCCTCTTGCCTTTCATCATCCTGTCTATT------------------CCGCGGATTTTCGCCCAGAGCACCTCTCCTCGGACAC----------------------------------------------------GTTCGAGGGAGAGGT-GTCTCGTAGCTAGTCGTCGTCAGGTTTA---------------TCGACAGGAAGAGCGAA--TATGTCCCGTCAAAGGGACATTTCGAAAGCTCACGTATCTCCTGTTCTTTCTCGAACACTGTTCGC------GTGGGGGGACGGGTCGAAGA-GGGGCGTACATCGGGTAGCAT------------------------------------
#=GC RF_cons                      --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCUCACGUAUCUCCCGUCUCCUCUGCUUUU______________GUGGGGAGAUGGGUCGAAGA_GGGGCAUACAUA---------------------------------------------
#=GC SS_cons                      --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.((((.....((.(((((((((((.......................)))))))))))..)).....)))).......---------------------------------------------
//

• Image source 8.1:

# STOCKHOLM 1.0
#=GF RW van Nues, September 2023
#=GF https://coalispr.codeberg.page/paper
#=GS transcript-with-ncRNAs-as-CNAG_05651/1-388 DE 14: [881,099 - 882,066] (+967)
transcript-with-ncRNAs-as-CNAG_05651/1-388         --------------------------------------------------------CATTCCCATTGTCGCTACCTACACACCACATTCCATTCAACCCGCGGTTCTTAGATCCACGACTAGGAG-GATTATCTTCCTTCCCTCCGTTCCTCCTTCT--------------------------------------------------------------------------------------------CCAGATAGGTTGAGCGGAGCATA-AGGTTAAT----------------GGGTCCTCCGCCAGCCCTGCCAGGCTGTGCGATTGGTCGCTGTATGAGTCAACCCGTGGAAGAGC-ATTGCCCATGTTAA--CTGTGTCTCGTCATGTTCTG--CTCGTTTTGAGTGGGATTGGTGCGGTCGGTTTACTTATTTGCCA---TGCCGTTTTGGCTAGGTG---AATGGGCTGCTGGTAGGTGG-------------------TGCCAGGTCTGAC-TATCTCATGTTGGTCTGGATTA-------------------------CCTTTGTAGCAAAAATCTTT-TGACATTTCATATATTCTAGT----------------------------------------------------------------------------------------------
#=GS AE017348.1:c304553-303587/1-386 DE Cryptococcus neoformans var. neoformans JEC21 chromosome 8 sequence
AE017348.1:c304553-303587/1-386                    --------------------------------------------------------CGTTCCTGATGTCGTTATCTACACACCACATTCCATCCAACCCGCGGTTCTTAGATCCACGACTAGGAG-GATCATCGCCCTTTCCTCCGTTCCTCCT-----------------------------------------------------------------------------------------------CCAAGTAGGTTGAGCGGAGCATG-AGGTTAGT----------------GGGTCCTCCGCCAGCCCTGCCAGGCTGTGCGATTGGTCGCTGTATGAGTCAACCCGTGGAAGAGC-ATTGCCCGTGGTAA--CTGTGCCCCATCACGTTCTG--CTCGTTTTGAGCGGGATTGTTGCGGTCGGTCTACTGATCTGCCA---TGCCGTTTTGGCTAGGTGG---ATGGGCTGCTGGTAGGTGG-------------------TGCCAGGTCTGAC-TGTCTCATGTCGGTCTGGATAA-------------------------CCTTTGTAGCAGAAATCTTT-TGACTCTTCGTATATTCTAGCT---------------------------------------------------------------------------------------------
#=GS HACAcnag05651-1/1-327 DE 327nt-ncRNA ncrna 8:304130:304457:-1
HACAcnag05651-1/1-327                              ----------------------------------------------------------------------------------------------AACCCGCGGTTCTTAGATCCACGACTAGGAG-GATCATCGCCCTTTCCTCCGTTCCTCCT-----------------------------------------------------------------------------------------------CCAAGTAGGTTGAGCGGAGCATG-AGGTTAGT----------------GGGTCCTCCGCCAGCCCTGCCAGGCTGTGCGATTGGTCGCTGTATGAGTCAACCCGTGGAAGAGC-ATTGCCCGTGGTAA--CTGTGCCCCATCACGTTCTG--CTCGTTTTGAGCGGGATTGTTGCGGTCGGTCTACTGATCTGCCA---TGCCGTTTTGGCTAGGTGG---ATGGGCTGCTGGTAGGTGG-------------------TGCCAGGTCTGAC-TGTCTCATGTCGGTCTGGATAA-------------------------CCTTTGTAGCAGAAATCTTTT-------------------------------------------------------------------------------------------------------------------
#=GS HACAsnoRNA-in-exon1-CNAG_05651/1-326 DE 14: [881,195 - 881,521] (+326)
HACAsnoRNA-in-exon1-CNAG_05651/1-326               -----------------------------------------------------------------------------------------------ACCCGCGGTTCTTAGATCCACGACTAGGAG-GATTATCTTCCTTCCCTCCGTTCCTCCTTCT--------------------------------------------------------------------------------------------CCAGATAGGTTGAGCGGAGCATA-AGGTTAAT----------------GGGTCCTCCGCCAGCCCTGCCAGGCTGTGCGATTGGTCGCTGTATGAGTCAACCCGTGGAAGAGC-ATTGCCCATGTTAA--CTGTGTCTCGTCATGTTCTG--CTCGTTTTGAGTGGGATTGGTGCGGTCGGTTTACTTATTTGCCA---TGCCGTTTTGGCTAGGTG---AATGGGCTGCTGGTAGGTGG-------------------TGCCAGGTCTGAC-TATCTCATGTTGGTCTGGATTA-------------------------CCTTTGTAGCAAAAATCT----------------------------------------------------------------------------------------------------------------------
#=GS WM276/1-382 DE CP000297.1:774992-775955 Cryptococcus gattii WM276 chromosome L, complete sequence
WM276/1-382                                        --------------------------------------------------------CGTTCCCGTTGCCTCTACCCATACACCACATTCCATCCAATCCGCGGTTCTTAGATCCACGACTAGGAG-GATCATCGTCCTTTCCTTCGTTCCTCCT-----------------------------------------------------------------------------------------------CCCAGTAGGTTGGGCGGAGTATG-AGGTTAAT----------------GGGTCCTCCGCCAGCCCTGCCAGGCTGTGCGATTGGTCGCTGTATGAGTCAACCCGTGGAAGAGC-ATTGCCCATGGTAA--CTGTGCCC-ATCATGTTCTG--CTCGTTTTGAGCGGGATTGTG-TGGTCAGTATACCGATTTGCCA---TGCCGTTTTGGCTAGGTG---AATGGGCTGCTGGTAGGTGG-------------------TGCCAGATCTGAC-TATCTCGTGTCGGTCTGGATAA-------------------------CCTTCGTAGCAAAAATCTT-TCGACATTCATATTTACTAGT-----------------------------------------------------------------------------------------------
#=GS R265/1-386 DE CP025768.1:770439-771405 Cryptococcus gattii VGII R265 chromosome 10, complete sequence
R265/1-386                                         --------------------------------------------------------CGTTCCCGCTCCCTCTATCCATACACCACATTCCATCCAATCCGCGGTTCTTAGATCCACGACTAGGAG-GATCATCGCCCTTTCCTTCGTTCCTCCTTCT--------------------------------------------------------------------------------------------CCCAGTAGGTTGGGCGGAGTATG-AGGTTAAT----------------GGGTCCTCCGCCAGCCCTGCCAGGCTGTGCGATTGGTCGCTGTATGAGTCAACCCGTGGAAGAGC-ATTGCCCATGGTAA--CTGTGCCCCATCATGTTCTG--CTCGTTTTGAGCGGGATTGGTGCGGTCAGTATACTGATTTGCCA---TGTCGTTTTGGCTAGGTG---AATGGGCTGCTGGTAGGTGG-------------------TGCCAGATCTGAC-TATCTCATGTCGGTCTGGATAA-------------------------CCTTTGTAGCAAAAATCTT-TCGACATTCATATTCACTAG------------------------------------------------------------------------------------------------
#=GS CryVH5/1-373 DE JANBXI010000016.1:49850-50222 Cryptococcus sp. VH57_BW 16, whole genome shotgun sequence
CryVH5/1-373                                       --------------------------------------------------------------------------------------------CCCACCCGCGGTTCTTAGATCCACTTCCAGGAGGTACCAACCCCCTTCCCATCCCTCCCCTCTTCCC----------------------------------------------------------------------------------------AGAGTTCTCGAGTG-GGCGCACA--AGGGTCAAC----------------GGGTCCTCCGCCAGCCCTGCAAGGCTGTGCGATTGGTTGTTGTATGAGTCAACCCGTGGAAGAGC-GTTGCCTGTGCCCC--CT---CTTCGCC-TTTTCTG-GCCCGTCTTGGGCTGGGGAAG-GCGGGAGGGACAGCGGCCCGCCC---GGCCGTTTTGGAAGGGCGGG---AAGGCTGCTGGGAGGTG------------------TGAGCCTGAGCTGAA-GCGATGGTGTCGGCTTAGATAA-----------------------CCCTTTTTCAGCAGAGATTTTTTCGACCAACCCACTGGTTCTTATTGTG---------------------CTTGGTGAGTCTA-------------------------------------------------------
#=GS CryWin/1-398 DE CP034264.1:951319-952310 Cryptococcus wingfieldii strain CBS7118 chromosome 4, complete sequence
CryWin/1-398                                       --------------------------------------------------------TGACTTTTACCACACCTCCCCTCCCTCTCCCACTCTCCCACCCGCGGTTCTTAGATCCATTACCAGGA-TGACTATCCCCCTTCCCTCTCTTCACCCCGCACCTCTTTCTCCTC---------------------------------------------------------------------GGAGACTGGAACATGGGCTGTGAAGTGAGCATAAGGGTTAAC----------------GGGTCTTCCGCCAGCTCTGCAAGGCTGTGCGATTGGTTTTTGTTTGAGTCAACCCGTGGAATAGTGATTGCCC---------CT--TTTTCG---GTCCTCG---ACTTTTTG-------TTGGGTTGACTGGATTCTTTTCCTTTTT----GCCGTTTTGGCGAGCTGG--ATGGGGTTGCTGGGAGGTG-------------------TGGCCTGAGCTAAT-CTCATA---GTGGCTTGGATCAG------------------------TCCTCTCTGCAGACATTTATCAACATCGCCTTTCATAGGTATTCCCAA----------------------------------------------------------------------------------------
#=GS CryFlo/1-368 DE RRZH01000006.1:937000-937588 Cryptococcus floricola strain DSM 27421 chromosome 6, whole genome shotgun sequence
CryFlo/1-368                                       -------------------------------------------------------------------------------------CCACACTCCCACCCGCGGTTCTTAGATCCATTACCAGGA-TGACTATCCCCCTTCCCTCTCTTCACCCCGCACCTCTTTCTCCTC---------------------------------------------------------------------GGAGACTGGAACATGGGCTGTGAAGTGAGCATAAGGGTTAAC----------------GGGTCTTCCGCCAGCTCTGCAAGGCTGTGCGATTGGTTTTTGTTTGAGTCAACCCGTGGAATAGTGATTGCCC---------CT--TTTTCG---GTCCTCG---ACTTTTAG-------TTGGGTTGACTGGATTCCTTTCCTTTTT----GCCGTTTTGGCGAGCTGG--ATGGGGTTGCTGGGAGGTG-------------------TGGCCTGAGCTAAT-CTTACA---GTGGCTTGGATCAG------------------------TCCTCTCTGCAGACATTCATCAACATCGCCTT-CATAGGTATTCCCAA----------------------------------------------------------------------------------------
#=GS CryAmy/1-368 DE MEKH01000004.1:c639260-638672 Cryptococcus amylolentus CBS 6273 supercont2.4, whole genome shotgun sequence
CryAmy/1-368                                       -------------------------------------------------------------------------------------CCACACTCCCACCCGCGGTTCTTAGATCCATTACCAGGA-TGACTATCCCCCTTCCCTCTCTTCACCCCGCACCTCTTTCTCCTC---------------------------------------------------------------------GGAGACTGGAACTTGGGCTGTGAAGTGAGCATAAGGGTCAAC----------------GGGTCTTCCGCCAGCTCTGCAAGGCTGTGCGATTGGTTTTTGTTTGAGTCAACCCGTGGAATAGTGATTGCCC---------CT--TTTCCG---GTCCTCG---ACGTTTTG-------TTGGGTTGACTGGATTCTTTTCCTTCTT----GCCGTTTTGGCGAGCTGG--ACGGGGCTGCTGGGAGGTG-------------------TGGCCTGAGCTAAT-CTTATA---GTGGCTTGGATCAA------------------------TCCTCTCCGCAGACATTCATCGACATCGCCTT-CATAGGTATTCCCAT----------------------------------------------------------------------------------------
#=GS KwoShan/1-392 DE NQVO01000005.1:266109-267155 Kwoniella shandongensis strain CBS 12478 scaffold00005, whole genome shotgun sequence
KwoShan/1-392                                      --------------------------------------------------------ACCTCCCTCCGTCCTCCTCACTCTACATCCCCATCT-CAACCCGCGGTTCTTAGATCCACTACCAGGAGTGACTATCCCCTCTCCCTCTTCTTCC---------------------------------------------------------------------------------AGTCGCAAAATTAAAAACTTTCGATTGGAAGAGGAACATGGAGGTTAAT----------------GGGTCCTCCGCCAGCTCTGCAAGGCTGTGCGATTGGTCGTCGTATGAGTCAACCCGTGGAATAATGCTTGC-----------CTAAATACCGCTTTATC----GTCAGATAATG------TGGTGTTTCTCGAAAA----------------GCCGTCTTGGCGATTCGAA--AAGGTTGCAAATGGGGTGT----AAAGAATCTTCTCATAAGCCGAGCT----CTCCA----AGAGCTTGGAGTTACA------------------------TCTCAAGCAGACATATCTTTATCACACTTCGACAACGATTTTCTTTCTTT------------------------------------------------------------------------------------
#=GS NaeEnc/1-390 DE MCFC01000068.1:78283-79199 Naematelia encephala strain 68-887.2 BCR39scaffold_68, whole genome shotgun sequence
NaeEnc/1-390                                       -------------------------------------------------------------------------TCTTACCACTCCCCCAACT-ATTCCCGCGGTTCTTAGATCCGCGACCAGGAG--ATCAGCTCCTCTCCCCTCCCAACCTCTCTTTC-GTACTC-------------------------------------------------------------------GGTATGA-TCCAAGAGTCAGGTTTGGTGATTTCAAGCGGGAGAAGCAG----------------GAGCCCTCCGCCACCTCTGCAAGGGTGTGCGATTGGTCGTCGCATGAGTCAACCCGCGGAACATCTACCAGGCC--TTTG--TGATTCCCTTTATAAAA----CCTCGCTC-GCGGGGTTAAGGGTGAATTTCTGCTAGAA----------GATCGTTTTGGTCGTCGAG---CGGGCTTGCTACGG---TC---ATAAGTGTCTTG--TCGTTCTGACTAT------------GATGCTTTGATCAA------------------------------CAGCAGAGATCTTCTTACCTTTTTGCTCTATTTTCTTTCTTTCTGTCC----------------------------------------------------------------------------------
#=GS NaeAur/1-408 DE JAKFAO010000004.1:751858-752914 Naematelia aurantialba strain NX-20 Contig4, whole genome shotgun sequence
NaeAur/1-408                                       --------------------------------------------------------AAATAATTTTGTCTCTTCCTGGCGACTCCCCACGCT---CCCCGCGGTTCTTAGATCCACGACCAGGAG-GACCAGCTCCTCTCCCCTCCCAGCCTCTCCTTTCGTCCCC-------------------------------------------------------------------GGTACGAATCCCGGAGCCAGGT-TGGCGATT-CAGGTGGGAGATGCAAG---------------GAGCCCTCCGCCACCCTTGCCAGGGTGCGCGATTGGTCGTCGCATGAGTCAACCCGCGGAAAATCTACCCGGCC-TTTAT--TGCCTTTACCTTAATCGCTT-TTTAGCAT-GAGGGG-TCTGGG-GAATCTTGGCTCGAG----------GACCGTCTTGGTTGTCGAG---CGGGCTTGCTACGA---TT---CACAGTGTCTTGC-TGTTCCAGA--AGA--TCACT-------GT--GGACCA------------------------------CTAGCAGAGATGCTTTCTTTCATCTTCCCTTCCTGTGCGGAGTCGTCT-----------------------------------------------------------------------------------
#=GS CryGC4/1-411 DE JALPCA010000812.1:c2113-1703 Cryptococcus sp. GC_Crypt_4 iso00_46_846, whole genome shotgun sequence
CryGC4/1-411                                       ---------------------------------------------------------------------------------------TTCATTCAATCCGCGGTTCTTAGATCCCCGACCAGGGG-GACATTAGCTCGACATCCAGCGTCTTCCAGGAAAATTATTC----------------------------------------------------------------GAGAGAATGTGATTACTGGAAGTTTAGATTCATCTTGTAATCGCTGAGATTTGTATCGA-------GTGTCCTCCGCCAGCCTTGCCAGGCTGTGCGATTGGTCGTTGTATGAGTCAACCCGTGGAAGATTGACTCGAACC-------------TCATATTCTTTCTT--CTCGTCTTGAGTTGATCT---TGAAT---GGCTATC-----------GACCGTTTTGGTTGATAG---AGAGGTTTGTTGGAGATCATTCACGGTTATATCGTTCATCCTCAATGAC----------------GATTTGACTTGA-------------------------TCTTTGACAGACACCTTTGGTTTGTAGAGTAGATTTA------------------------------TCTGTGAGTACACCTTCCTTGCTTCTTTTCATCTACCA-----------------------------
#=GS CrySki/1-396 DE BCHT01000004.1:c997544-996802 Cryptococcus skinneri DNA, scaffold: scaffold_3, strain: JCM 9039, whole genome shotgun sequence
CrySki/1-396                                       -----------------------------------------------------------------------------------CGTTCACCTTCGATCCTCGGTTCTTAGATCCGCGACTAGGAG-GACGCAATCTCTACCCTTTTCCCCTCGAGGTCCCCTCCCATCCTTCACCTCT------------------------------------------------------------GTCATGGAGACTGAAGGACGGTGACGA-TCTAGAGTTGAGGATTAGGCTGTACGA----GAGTTCTCCGCCAGCTCTACCAGGCTGAGCGATTGGTCGTCGTATGAGTCAACCCGTGGAAGAGC------------------TTCTTGTCCAAATCCCTTCTTGGTGTTTTGGTCTTACCGGGAGGGAGAGTTGACCTGTCGTCTT----GACGGGTCTGCATGGACGGC-TTTGGTAGTCTTTGAT---ACCATGGTGA-ATCGTCTCT---------CGAT--TCATC----------AGACA------------------------------TCGAGCCGAAATTTCTTCGCCGCTTTCACGATATTTTCTTGTATCAGACA----------------------------------------------------------------------------------
#=GS VanHum/1-392 DE QKWK01000004.1:c153520-153129 Vanrija humicola strain CBS 4282 CBS4282_scaffold04, whole genome shotgun sequence
VanHum/1-392                                       -----------------------------------------------------------------------------CCCTTCCTCCCTCACCCCAACCGCGGTTCTTAGATCCGCGACCAGGAG-GACACATGTGCTGGCCGGCTCTGCTCACT-----------------------------------------------------------------------------GGGCCCCTGGGCTCTGCTTATGCCTGGTGAG-----TTGGGGTACGGACTCCCCAGC--------GCGTCCTCCGCCA-CCCTGTC-GG-TGTGCGATTGGTCGTCGTATGAGTCAACCCGTGGAAGAGC-----ACCACCCATT--GCGGGCTCTGCGAAGGCTGC--CTCGTTTTGGGGCT-GGCCGGCT-GCG-GGCCCGTGTCTTCCACCGCTCCCGTTCTGGGGGCACGGTTGGGGTGTGCTTGGGAT--------------------------------CAAT--AT------GCGGTTGTGCG--------------------------------CACGCACAGCTCTACCGATCCCGTAGCAGACATTCCTCGTTCGACCTGCATTTGTTTGTTGTTTCTGGTGAGT----------------------------------------------------------
#=GS VanFra/1-466 DE BEDY01000002.1:c787081-786616 Vanrija fragicola DNA, scaffold: scaffold_2, strain: JCM 1530, whole genome shotgun sequence
VanFra/1-466                                       --------AGCATGCAGCTCTTACGCCCAGCCCATCCTGTCTCTCCCTAACTTTCCTTCCGCGTCCCCCACTCCTTTCCTCTTCATCCCCTCCCCATCCGCGGTTCTTAGATCCGTGACCAGGAG-GACACATGCTTCAGCCGCGTCTGCTGCGT--------------------------------------------------------------------------------GTACCGCTGGACCTCGCGTTCATGTGCA------CCAGCAGATGACGGGATCACTGAA----GCGTCCTCCGCCA-CCCTATC-GG-TGTGCGATTGGTC-TCGCATGAGTCAACCCGTGGAAGAGT---GTCGCCCCTTTGCGTGTCTATTGCTTTTAGTCTGCTCTCGTCTTGAGAGTTGGGCTGCTTGCGCGGACCGCACCTGCCACCGTACCCGTTTTGGGTGCACGGCTGGGGCGTGCTTGGGGGTCACGCCGCGGGCTGG------TGCATGCCA---------------GCTTGCTCGA-----------------------------TCTCTGAGCAGACATCTTCAAGTCTATCCTTGTTCATTA------------------------------TGGTGAGTGTCTC-----------------------------------------------------
#=GS TreFuc/1-337 DE BRDD01000107.1:217708-217976 Tremella fuciformis NBRC 9317 DNA, KCNB80TF.107, whole genome shotgun sequence
TreFuc/1-337                                       --------------------------------------------------------ACTATTGACCCCTCGATCCACCTCTCCCCCCCACCT-CGACCCGCGGTTCTTAGATCCGCTACCAGGAG-GATCCCTCCCCTCTTCCCCTCCACCCGACTACCC-----------------------------------------------------------------------------------TTGACCGGGGAAACGGTGGAATGGTTT------GCGAAGAGGACAG--------AGGCCCTCCGCCAGC-CTGCC-GGCTG-GCGATTGGTCAGCGCATGAGTCAGCCCGTGGAAGAGT-AT-CTCCCA---------GCCCTCTCCGAGG--------TTGTTTTGATCGACGAGAGGG----------------------------CGCTTTGCTGCGGATCAATGAGAATATCGCGGGC-------------------------TGTCCA-------AT------GATGGATTGACCGTTTA-----------------------CACCCAGCGCAAATTCCTTGTATACATTGCAC------------------------------------------------------------------------------------------------------
#=GS TreYok/1-377 DE BRDC01000026.1:c857689-857313 Tremella yokohamensis NBRC 100148 DNA, KCNB35TY.26, whole genome shotgun sequence
TreYok/1-377                                       --------------------------------------------------------------------------------------TCTCCCCCGTCCCGCGGTTCTTAGATCCGCTACCAGGAG-GATCCCTCCCCTCTTCCCCTCCTCCCGACTACCC-----------------------------------------------------------------------------------TTGACCGGGGAAACGGTGGAATGGTTT------GCGAAGAGGCCAG--------AGGCCCTCCGCCAGC-CTGCC-GGCTG-GCGATTGGTCAGCGCATGAGTCAGCCCGTGGAAGAGC-AT-CTCCCA---------GCCCTCTCCGAGA--------TTGTTTTGATCAACGAGAGGG----------------------------CGCTTTGCTGCGGATCAAAGAGAATATCGCGGGC-------------------------TATCCA-------AT------GATGGATTGACCGTTTA-----------------------CACCCAGCGCAAATTCCTTTTCTATACATTGCAC---------------------------------TTGGTGAGTCCCCCCTCCATCCTCACTGCCTTTCCCTTCTACCCACTCGCGATGAAGAAGCAAAACT
#=GS TreTag/1-369 DE CAJHEQ010000099.1:c4138-3402 MAG: Tremellales sp. Tagirdzhanova-0007 genome assembly, contig: TREM_99, whole genome shotgun sequence
TreTag/1-369                                       --------------------------------------------------------GCATGCACGCGTTCGACAACACCTCTTCCCTCCCGTATATCCCGCGGTTCTTAGATCCACGACTAGGAG-GACACCATCCTCGCTTTCCCCCTAGATCCCTTT----------------------------------------------------------------------------GTCCTTGTATAGAGGGGGTTTTGGTGGGGTT----------------CGCGA----------GCGTCCTCCGCCAGC-CT-CCAGGCTGCGCGATTGGTCGTCGCATGAGTCAACCCGCGGAACATCGATAGCTCCT-----------GCTTTTTCC------------GTATATGGTCTGCGGAAAGGCTTACTCGCT--------------GATCGTCTTGGT------CGAAGAG-------TGGGCTTGCTGGGACGCTTACGTGGG----CTACGACGT-------------GTGGTCTGCTTAGCG--------------------------TTTGGCAGAAATTCCTGATTCCCATTGGATCACTCTCGTCTTTTTCCGCT----------------------------------------------------------------------------------
#=GS TreMes/1-457 DE SDIL01000010.1:293026-293482 Tremella mesenterica strain ATCC 28783 supercont1.10, whole genome shotgun sequence
TreMes/1-457                                       -TCGCGAGCGCTCTCATCTTTTCTTTCTTACCTTCTTCACCTCCTTCTACATCTCTGGCAATCATCTGAACTGATTCTCCCACTCCTTGACCCCCATCCGCGGTTCTTAGATCCGTGACTAGGAG--ATCCCCTCTACCCACTTTATTTTCTTATTAGACACTTTCC--------------------------------------------------------------------GAGTGTCCGAACAGAGAACAAAAGTGGGA------------------CCAGA-----------GG-CCTCCGCCAGCCTTAT--GGCTGTGCTATTGGTCG-CGCATGAGTCAACCCGTGGAAGAGTCGTCGTTTCG-------------TTAAC------------CCGTTATGGGTCTAACGAACGTGCTGGGGAGAATATCTC-------GGTCGGTCCATTGTGGATCAATCGA-----TTGGTCTT------------------------CAGCGA-------ATAT--------GTCTGAA-----------------------------CTTCTCGCAAACATCTCAAACATGTTAACTCGTATA-------------------------------CTGGTGAGTCTTTAATTTTCATCTCGGTCCATATCCCTATTCCAACCTTAGTCGCCATG--------
#=GS TriGue/1-376 DE BCJX01000002.1:c2258075-2257700 Trichosporon guehoae DNA, scaffold: scaffold_1, strain: JCM 10690, whole genome shotgun sequence
TriGue/1-376                                       ------------------------------------------------------------------------------------CCCTCCCCCCAACCCGCGGTTCTTAGATCCGTGACCAGGAG-GACACATGCCTCGGCCGCCTCGGCCTCCTCCC-------------------------------------------------------------------------------------GGCGCTCACGCGTCGGTGGGGCCGGGGAC----GGGTCTCCCGAG---------GCGTCCTCCGCCAGCCTT-TCA-GCTGTGCGATTGGTCGTCGTATGAGTCAACCCGTGGAAGAGTGTCGCCTGC------------GTCTCGTGCGTCGCGG--CTCGTCTTGAGTTTG--TGGCGCACAAGAGTCG---CTTGTCGT---GTCCGTTCTGGG-CTCGGCGTGGCGTGCTTTGGGG---TCAATATGCAGGCTGGCA-----TGGCCCAGC---------------TCGCTCGA------------------------------TCTCGAGCAGAAATTTTATTCCGACCCACATACCCTTT-----------------------------CTGGTGAGTGACTTGTCCCGTCTTGCTC---------------------------------------
#=GS TriInk/1-371 DE JXYM01000003.1:c2483108-2482763 Trichosporon inkin strain JCM 9195 scaffold_0003, whole genome shotgun sequence
TriInk/1-371                                       --------------------------------------------------------ACCATCGTTCCTGCCGTTCCCTCTCTACCCTTCTCTCCAACCCGCGGTTCTTAGATCCGCGACTAGGAG-GATCACGCCAATGGTCTCTGTCGAGCTTCGCGCTT-------------------------------------------------------------------------------------------------------------------GATACATCAGACA--------GCGCCCTCCGGGAGCCTT-TC--GCTCGCCGATTGGTCG-CGTATGAGTCAACCCGTGGAAGAGCGTTGCTGTC------------GCCAAGCCT---------CTCGTTCTGAGTTGGCTCGGTGTTTTTCTGGATACTA----------CTCCGTTTTGGAGCATCCGGCCGGCATGCTTGGATCCCGACCGCTGGCTGAGGGCAGCTC-TGCCTGAGCGTTCTCTCCTTC-AGACAGTGGTAGGG---------------------------TCCGGGCGAACATCGCTCTGTACGTCAATTTTTTTTTCTTTGA------------------------------------------------------------------------------------------
#=GS TriAsa/1-372 DE JAMALY010000015.1:205888-206279 Trichosporon asahii strain Y3 ctg_15, whole genome shotgun sequence
TriAsa/1-372                                       --------------------------------------------------------TCCTCCGTTCCCCGCTCCTCTCCCTGCCTCTA--TCCCAACCCGCGGTTCTTAGATCCGCGACTAGGAG-GATCACGCCAATGGTCACTGCCGGGCT-CACGCTC-------------------------------------------------------------------------------------------------------------------GGCACATCAGAAC--------GCGCCCTCCGGGAGCCTT-TC--GCTCGCCGATTGGTCG-CGTATGAGTCAACCCGTGGAAGAGCGTTGCTGTC------------GCCAGGTCG---------CTCGTTCTGAGTCGGCCTGGTGTTTTTCTGGAAATCA----------CCCCGTTTTGGGGCTTCCGGCCGGCATGCTTGGATCCCGACCGCTGGCTGAGGGCAGCTCCTCG-CGAGCACTCCATCCTTC-AGGCGGTGGTAGGG---------------------------TCTGAGCGAACATCGCTCTGTACCGATCGCATAAT-TTCTGCTAAAAA-------------------------------------------------------------------------------------
#=GS TriCor/1-354 DE JXYL01000025.1:617681-618034 Trichosporon coremiiforme strain JCM 2938 scaffold_0025, whole genome shotgun sequence
TriCor/1-354                                       ------------------------------------------------------------------------------------CCTCTATCCCAACCCGCGGTTCTTAGATCCGCGACTAGGAG-GATCACGCCAATGGTCACTGTCGGGCT-CACGCTC-------------------------------------------------------------------------------------------------------------------GGCACATCAGAAC--------GCGCCCTCCGGGAGCCTT-TC--GCTCACCGATTGGTCG-CGTATGAGTCAACCCGTGGAAGAGCGTTGCTGTC------------GCC-GGTCG---------CTCGTTCTGAGTCGGCCTGGCGTTTTTCTGGAAATCA----------CCCCGTTTTGGGGCTTCCGGCCGGCATGCTTGGATCCCGACCGCTGGCTGAGGGCAGCTCCTCG-TGAGCACTGCATCCTTC-AGGCGGTGGTAGGG---------------------------TCTGAGCGAACATCGCTCTGTACCAATCGCATCTTTTTCTGCTAAAAA-------------------TTGTGAGT----------------------------------------------------------
#=GS TriOvo/1-356 DE WEIQ01000002.1:390175-390661 Trichosporon ovoides strain 2NF903A scaffold2-size1541096, whole genome shotgun sequence
TriOvo/1-356                                       ----------------------------------------------------------------------------TCACCGACTCTA--CACCAACCCGCGGTTCTTAGATCCGCGACTAGGAG-GATCACGCCAATGGTCTCTGTCGAGCCTCGCGCTC-------------------------------------------------------------------------------------------------------------------GATACGCCAGAAC--------GCGCCCTCCGGGAGCCTT-TC--GCTCGCCGATTGGTCG-CGTATGAGTCAACCCGTGGAAGAGCGTTGCTGTC------------GCCAAGTCC---------CTCGTTTTGAGTGGATTCGGTGTTTT-CTGGAAATCA----------CTCCGTTTTGGAGCTTCCGGTCGGCATGCTTGGATCCCAACCGCTGGCTGAGGGCAGCTCCTCGTCGAGCA--CTATCCCTTCAGACAGTGGTAGGG---------------------------TCTGAGCGAACATCGCTCTGTACTGAACCTCGATTTTTGGGGTTTTCTATA----------------------------------------------------------------------------------
#=GS CryFla/1-373 DE CAUG01000665.1:c226167-225789 Cryptococcus flavescens NRRL Y-50378 WGS project CAUG00000000 data, contig NODE_2199_length_286162_cov_45_720577, whole genome shotgun sequence
CryFla/1-373                                       --------------------------------------------------------GATCACCCTCTTCCCCTTCCCCCTCCCCTTCTCCGACCCTCCCGCGGTTCTTAGATCCACGACCAGGAGCGACATCCCC-TCGGACCCCTCTCGGCC---CGATA---------------------------------------------------------------------------------TCAGATGTAATACTCGGTA-TGGGTC--------GATGGTGCATCGA--------GCGTCCTCCGCCAGCGC--TCA-GCTGTGCGATTGGTCAGTGTATGAGTCAACCCGTGGAAGAA-TCAACGCTC------------GCCTCGCTTGGTCTGCATCCCGTCTTGGGATCGGCCGGGTNNNNNNNNNN-----CCGGATG---CACCGTCTTGGTGC------GTCCGGG-CCCGAGGCATTGCTCGGGTCTGATGGGG----TTGCCTGATGGC--TATCT----------GCGACGA---------------------------CTATGAGCAGAGATCCCATCAGATCGTACTCTAG----------------------------------------------------------------------------------------------------
#=GS PapTer/1-337 DE JAHXHD010000244.1:1-462 Papiliotrema terrestris strain LS28 scaffold-243, whole genome shotgun sequence
PapTer/1-337                                       --------------------------------------------------------------------------------------CTCCCCCCCTCCCGCGGTTCTTAGATCCACGACCAGGAGTGACATCCCC-TCGGAGCCCCTCTCGACC--CGATA---------------------------------------------------------------------------------TCAGACTAACAA-TCGGTA-TGGGTC--------GACGGTGCTTTGA--------GCGTCCTCCGCCAGCGC--TCA-GCTGTGCGATTGGTCAGTGTATGAGTCAACCCGTGGAAGAA-TCAACACTC------------GCCTCGCCTGG-ACGCATCCCGTCTTGGGATCGGCCGGGTTCGCC----------TCGGGCA---CACCGTCTTGGTGC------GCCCGGG-CTCGAGGCATTGCTTGGGTCTGATGGG----TTTGCCTGATGGC--TATCT----------GCGACGA---------------------------CTATGAGCAGAGATCCCATCAGGTCGTGCAATAG----------------------------------------------------------------------------------------------------
#=GS ApiBra/1-386 DE JAMALJ010000009.1:587447-587832 Apiotrichum brassicae strain M2204 ctg_9, whole genome shotgun sequence
ApiBra/1-386                                       ---------------------------------------------------------------------------TCTCTCTCTCTCCCTCCCCCACCCGCGGTTCTTAGATCCCCGACTAGGGG-GACACATGCCCCGGCCGCTCCGGTCT------------------------------------------------------------------------------GGGTGCAGCTGCTCGCAGCTCGCGCAAGC---TGGA----------GACGGAGTTACCTCG------GCGTCCCCCGCCACCCTT-CC--GGTGTGCGATTGGTCGTTGTATGAGTCAACCCGTGGAAGAGCGCCGCTCTC--------------TGGGCTGCGTGGCAACCTCGTCTTGAGCGCGCTACGTAGCCC--------GGTTCGCATC---CCCCGTTCTGGGGTTT----------GCACAGCGTGCTTG---GGGTCGTCTTGTC---GCTCGCAGACATG--TATTCT-------GCGGGTACACAGA-----------------------TCTCGAGCAGACATCCCATCAATAAATCTCCCCTT--------------------------------TTCGTGAGTGTCTTTTGTCCTACCCTCTC--------------------------------------
#=GS KwoDej/1-397 DE ASCJ01000022.1:c146382-145986 Kwoniella dejecticola CBS 10117 cont1.22, whole genome shotgun sequence
KwoDej/1-397                                       --------------------------------------------------------------------------CTTATCCACCCACCCACCCAAACCCGCGGTTCTTAGATCCACGTCCGGAAAGAACACCCCCCATATTCCTTATAC-CTCAGCA-CTCACTCTCTCTC---------------------------------------------------------------------GAAAGAAAGGGAGGCTGGGTATTT----------------GACTGAACAGGGTCAATGGTTCTTTCGCCTGCTCTACCAGGCAGTGCTATTGGTCGTTGTATGAGTCAACCCGTGGAATAATCATCGCCTTATTTCCATCTTCCCTTCGTCCTCCTCTGTCGTTCTGACGGAGGGGTTGAGGTGGGGATGGAGTTGATCTC-------GATCGTTTTGATCTTGAT------CTAAAGGTTGCTTCAT--GGGTGTTTCCTTTTTCATCTTTCCGATGATTG--TTCC---GAGCCATCGGGATATCATGACG------------------CTCTTAGCAGAAATTCAATCCCATT-------------------------------------------------------------------------------------------------------------
#=GS KwoBes/1-375 DE ASCK01000002.1:c1082295-1081921 Kwoniella bestiolae CBS 10118 cont1.2, whole genome shotgun sequence
KwoBes/1-375                                       ------------------------------------------------------------------------------------CCACCACCCAAACCCGCGGTTCTTAGATCCACCTCCAGGAAAGAACGTCCCCCTAGATTCCTCTTACCCTCTCCATC----------------------------------------------------------------------------------------GGGCAGAGGGTAATTGATTGAATT--------GGGTTTATAC------GGTTCTTTCACCTGCTCTACCAGGCAGTGTTATTGGTCGTTGTATGAGTCAACCCGTGGAATAGTCAATACCTTTTCTTTTGCCTA---------------CCCCCCGTTCTGGGGAGTGGGTGGAA-------------GGCTGATCC--GGTCGTTTTGACGGGGTT------GGAGAGGTTGCTTTT--------GGGTGGTTTATTGTTATGTCGGGCTGTGTTTTATTGGCCAGGTCGACGGTTTCACG---------------------CTTTAGCAGAAATTTTTTCAATAGTATCAAAAACAACTTTGGTATTGTACAAAA-------------------------------------------------------------------------------
#=GS KwoMan/1-374 DE ASQF01000019.1:c167233-166860 Kwoniella mangroviensis CBS 8886 cont1.19, whole genome shotgun sequence
KwoMan/1-374                                       ------------------------------------------------------------------------------------CTACCACCCAAACCCGCGGTTCTTAGATCCACTTCCAGAAAGAATATCTCCTTTTTCCTCTCGCTCCTTTCTACA----------------------------------------------------------------------------------------GAGAAAAGGTGGTGATTGATTGAAAA------CATAGGAATCAC------GGTTCTTTCACCTGCTCTACCAGGCAGCGTTATTGGTCGTTGTATGAGTCAACCCGTGGAATAATCATCACCTTATTCCCTTCAAA---------CCGC---GTCTCGTTCTGAGGTGTGACCCGA----GGGGAGCCGATACCGAT-------CGTTTTGATCGAATT------GGAAAGGTTGCTATGAT------GGGTGTTGTCATCTAGTTAAATTGTGTTTAAAGTTGACCAATTTGATGCTTCCGACG--------------------CTTTAGCAGAAATTTCCTAGTATAATAACAAATTTGGTCAT--------------------------------------------------------------------------------------------
#=GS KwoHev/1-522 DE ASQC01000174.1:20223-20744 Kwoniella heveanensis CBS 569 cont2.174, whole genome shotgun sequence
KwoHev/1-522                                       -------------------------------------------------------------------------------------CCCCCACCCTACCCGCGGTTCTTAGATCCACGATCAGGACAGGTATCCCCCTTATGCCTCTGACTCTCACCAAACCGCTCCTCCCCCTGGCCTCGCGCTCGTGAATTCACTCTACATCCTCGTGATGTACCGGGTGGATGAGCGAGCTCAAGCGTGAGGGGGATGACGTTCTGGTGGTTTCCAGAGAGATCTAGAGGATAAAAAGGGTTAAAGGTCTGTCCGCCTGCTCTACAAGGCAG-GCGATTGGTCGCTGTATGAGTCAACCCGTGGAATAGCCATGCCTTGCCCGCTTTTCTTTCTCAGCTTCCGTCTTGGGAGCTGGTGAGATCATAGCGGGCTTGCTTGCACCGAAATGGAC---GGTCCGTTCTGGATCTGTTATTTTTCGGAAGGTTGCTTAGGGGTGTTGGGGTGATCTTCTCGTTTGAATTCGCCTTTGCATCGAGCTCGGTTGGTTCTTTGTCATCAGCTTGATCTACAT----CCCACAGCGGAAATCTCTTCATTTCTTTGTCTTCTTCGTTTCTT------------------------------------------------------------------------------------------
#=GS BulAlb/1-391 DE CAMYTR010000006.1:c193798-193408 Bullera alba genome assembly, contig: jcf7180000012098, whole genome shotgun sequence
BulAlb/1-391                                       -----------------------------------------------------------------------------------------CGATCAGCCCGCGGTTCTTAGATCCGCGACCAGGAG-GATCGCAACGTCGACCTCGCCTCTCAATTCTCTGACCCATCTCTTC-------------------------------------------------------------------GGATCGGGTCAGCAGACGCGTGACAAGTTGAGAGGTGAGCGTGGGA------------AGATCCTCCGCCAGCTCTGCAAGGCTGTGCGATTGGTCGTCGTATGAGTCAACCCGTGGAAGATTGACTCGGCAC----------CCTCACCATCCGGTCTC--TTCGTCTTGAAGAGGTC-----GGATCTCGGTTC--------------GCCGTCTTGGCGGATC------GTACGAGGGTCACTT--GCTCAAAGGGTCTATCAACCACGAGAAGGCTG---TT---GTGGTCTTCTCGATCCTGGG------------------------CTCTTGCATACATCCTCCCATCCAAGTTCATATACTT----------------------------CCTTGTGAGTAACGTCTCCT------------------------------------------------
#=GS CutDas/1-363 DE BEDX01000001.1:c3937094-3936732 Cutaneotrichosporon daszewskae DNA, scaffold: scaffold_1, strain: JCM_11166, whole genome shotgun sequence
CutDas/1-363                                       --------------------------------------------------------------------------------------CCATCTCCCTCCCGCGGTTCTTAGATCCGCGACCAGGAGGGCACATGTCGCGGCCGCCCTGGCTGCCGGCCTCAC---------------------------------------------------------------------------------------------GGCTGAACG--CCGGGGACGGAAC-----TCCCCCG-------ACGTCCTCCGCCAGCCTC-T---GCTG-GCGATTGGTCTGCGTATGAGTCAACCCGTGGAAGAGTGCCGCCCAGCC-GCT------------GGCGCTGAGGGGCTCGTCTTGAGTCTCCTCTTCG---CCGGCAGCCGCCAC--------GTCCGTTCTGGACCGG-----------------------------CAGGGCGTGCTCGGGGCCTGCTGGTG----CTC-------GCAAGAGTCTCCATTGG---------------------CCCAGAGCAGACATTTCTCTTCAACCCCGTCTGA---------------------------------TTTGTGAGTCTCTCTTCCACCTCATC-TTTGTGATGAAAAAC-------------------------
#=GS CutOle/1-462 DE QKWL01000004.1:c2103386-2102925 Cutaneotrichosporon oleaginosum strain ATCC 20508 ATCC20508_contig04, whole genome shotgun sequence
CutOle/1-462                                       TCTCCGTCTCAGAGGCATGCACGCTTACATCTAGCTCCAGTTTCTCTTCCCTCCCCCTCCCCCTCCCCCTCCCCCTCCCCCTCCCCCTCCAACCAACCCGCGGTTCTTAGATCCGTTTCCAGGAGGGCGCTAACCCCGGCCGCTTCGCGCGTTGGCACTCTC--------------------------------------------------------------------------------------ACGAGCCGCCGCGCG---CGGAGACGGGC-------TCACCGGG-----GTGCCCTCCGCCAGCCTC-T---GCTG-GCGATTGGTCT-CGCATGAGTCAACCCGTGGAAGAGTGCTGCCCAG---GCTT--CTTGCCGTG-----------ACCCGTCTTGGGTTGT-----------GGCACGCCGTCGTGTCCA-----CCGTTTTGGGGGGCGCA----------------------------GGGTGTGCTCGG--CATCTCGGAG------CGCGTG-CAGGTGTGCGCGCATCTGA--------------------TCTCGAGCAGACATTCGTCTCGTCTCCCTGCTATCA--------------------------------CAGTGAGTGTCCATCCAGATCCATCATCTATGATGAAAAACAAAGCTCTAA---------------
#=GS KocImp/1-392 DE NBSH01000018.1:129865-130256 Kockovaella imperatae strain NRRL Y-17943 BD324scaffold_18, whole genome shotgun sequence
KocImp/1-392                                       ------------------------------------------------------------------------------------TTCCCACTCCAACCCGCGGTTCTTAGATCCGAGACCAGGAGGGTACCAAGACGATGGATCGAAAGGTCATTCTCTCCCCCCCCCCTTCCC-----------------------------------------------------------------------GTAAGGGACGAGAGTTTCTTCCTCTTTCTTTT------CCAGACATCT----TCCTCCAAGCGCTGTAAT----GGCTCC-TGATTGGTCTTTTGACGAGTCAACCCGTGGAATAATA-----------------------------GATGAT-GGTTCACCTCGCGAATGATCATA----------------------------TCGTCTTGATATGGTTGTTCACTTCTTTTTCTCACAAAAAAGGTCAGAGGTGGACATGCG-CCGAGGC----TTCTGAGTTTCGGAGGAGATACCCTAGCTGGGCTCCTCTCTTTATTCGACCCTTGGCAGACATTGCAATTAGTCACTATACAACAA--------------------------------TGTGAGTCTCATCTCTC------------------------------------------------
//

• Image source 8.2:

# STOCKHOLM 1.0
#=GF RW van Nues, September 2023
#=GF https://coalispr.codeberg.page/paper
#=GS HACAcnag05651-1/1-150 DE HACAsnoRNA-151nt ncrna 8:303617:303767:-1  AE017348.1:c303767-303618
HACAcnag05651-1/1-150         -------------------------------------------------------ACTCCCCCTCT-------GAAGAGTTCTCGTCTGCTT---TTAGCACTTTG-----ATGGCGAGCACTTTCATAAGGCTGG-GAAAGA---GCAAACT---------------CGCCCTATGGATTTCGGCTTT-GTCCTT--GCAT------------CAGCGGTGGACTG-GGTCGATTGAAAGGGCGCGTACATTAT--------
#=GS from-CNAG_05651/1-150 DE CP003833.2:881886-882035 Cryptococcus neoformans var. grubii H99 chromosome 14, complete sequence
from-CNAG_05651/1-150         -------------------------------------------------------ACTCCCCCTCT-------GAAGAGTTCTCGTCTGCTT---TTAGCACTTTG-----ATGGCGAGCACTTTCATAAGGCTGG-GAAAGA---GCAAACT---------------CGCCCTATGGATTTCGGCTTT-GTCCTT--GCAT------------CAGCGGTGGACTG-GGTCGATTGAAAGGGCGTGTACATAAT--------
#=GS R265/1-149 DE CP025768.1:771227-771375 Cryptococcus gattii VGII R265 chromosome 10, complete sequence
R265/1-149                    -------------------------------------------------------ACTCCCCCTCT-------GAAGAGTTCTCGTCCGCTT---TTAGCA-TTTG-----ATGGCGAGCACTTTCATAAGGCTGG-GAAAGA---ACAAACT---------------CGCCCTATGGATTTCGGCTTT-GTCCTT--GCAT------------CAGCGGTGGACTG-GGCCGATTGAAAGGACGTGTACATTAT--------
#=GS WM276/1-149 DE CP000297.1:775776-775924 Cryptococcus gattii WM276 chromosome L, complete sequence
WM276/1-149                   -------------------------------------------------------AATCCCCCTCT-------GAAGAGTTCTCGTCCGCTT---TTAGCA-TTTG-----ATGGCGAGCACTTTCATAAGGCTGG-GAAAGA---ACAAACT---------------CGCCCTATGGATTTCGGCTTT-GTCCTT--GCAT------------CAGCGGTGGACTG-GGCCGATTGAAAGGACGTGTACATTAT--------
#=GS CryVH5/1-173 DE JANBXI010000016.1:50544-50716 Cryptococcus sp. VH57_BW 16, whole genome shotgun sequence
CryVH5/1-173                  --------------------------------------TCATTCCCCAACCACCAACCTCCCCCATGT-----GAACAGTCCTTGCTCCCTTCTTACAGCA------------GGC--ACACATTCAT---GCAGGAGGGAAGACGAACCAAC-----------AACACATCCTATGGATTTCGGCATGAGTTCTA--GCAC------------ATGCGGTGGACCA-GGCCGATTGAATGGGCGCGTACATTCATCGT----
#=GS CryGC7/1-192 DE JALPBX010000033.1:c186573-186382 Cryptococcus sp. GC_Crypt_7 iso00_79_33, whole genome shotgun sequence
CryGC7/1-192                  ------------TTTGCATTTGTATTCTCGTGTCAGTCTGATGAGCAATTGCTCAACTCCCCCTCAC------TAAAAGGTTTCGCCTCAATTTCCC--------------ACGGCGAG-ATTTTT------CAGAGGAGGGAAAGAGAGACT-----------ACTACGCCCTATGGATTTCGGCCTT-GTTCTCTTGCTT------------ATGCTGTGGATTG-GGTCGATTGAAAGGGCGCAGACACGAGA-------
#=GS CryGC5/1-202 DE JALPBZ010000236.1:c13557-13356 Cryptococcus sp. GC_Crypt_5 iso00_58_236, whole genome shotgun sequence
CryGC5/1-202                  -ATTCGTCTTCTCACGCCATTCTGTCACTCTGTCATTCTACTGGGCACTCGCTCAACTCCCCCTCAC------TGAAAGGTTTCGCCTCGATCTCC---------------ACGGCGAG-ATTCTC------AAGAGGAGGGAAAAAGAGACT-----------TTTGCACCCTATGGATTTCGGCCTT-GTTCTTTTGCTT------------ATGCTGTGGATTATGGTCGATTGAAAGGGCGCATACATTCA--------
#=GS CryGC3/1-198 DE JALPCB010000238.1:c13574-13377 Cryptococcus sp. GC_Crypt_3 iso00_45_238, whole genome shotgun sequence
CryGC3/1-198                  -----------TCGCGTCATTCTGTCAATTTGTCATTCTATTGGGCACTCGCTCAACTCCCCCTCAC------TGAAAGGTTTCGCCTCGATTTCC---------------ACGGCGAG-ATTCTC------AAGAGGAGGGAAAGAGAGACT-----------TTTGCACCCTATGGATTTCGGCCTT-GTTCTTTTGCTT------------ATGCTGTGGATTATGGTCGATTGAAAGGGCGCATACAATCACGTCGC--
#=GS CryFlo/1-155 DE RRZH01000006.1:937638-937792 Cryptococcus floricola strain DSM 27421 chromosome 6, whole genome shotgun sequence
CryFlo/1-155                  ------------------------------------------------------TATCCCCCCGCG-------AAAGGGTTCTCGTCTGCT---ACAAGCACACCC-----ATGACGAGCACTTCTATA----TGGGGAGGATA-GACAGACT-----------GATTCGTCCTATGGATTTAGGCATC-ATTCT--AGCAA-----------TTTGCGGTGGATGG-GGTCAATTGAAAGGACGTGCACATACT--------
#=GS CryWin/1-155 DE AWGH01000003.1:858038-858192 Cryptococcus wingfieldii CBS 7118 supercont1.3, whole genome shotgun sequence
CryWin/1-155                  ------------------------------------------------------TATCCCCCCGCG-------AAAGGGTTCTCGTCTGCT---ACAAGCACACCC-----ATGACGAGCACTTCTATA----TGGGGAGGATA-GACAGACT-----------GATTCGTCCTATGGATTTAGGCATC-ATTCT--AGCAA-----------TTTGCGGTGGATGG-GGTCAATTGAAAGGACGTGCACATACT--------
#=GS CryAmy/1-154 DE MEKH01000004.1:c638623-638470 Cryptococcus amylolentus CBS 6273 supercont2.4, whole genome shotgun sequence
CryAmy/1-154                  ------------------------------------------------------TATCCCCCCGCG-------AAAGGGTTCTCGTCTGCT---ACAAGCACACCC-----ATGACGAGCACTTCTATA----TGGGGAGGATA-GACAGACT-----------GATTCGTCCTATGGATTTAGGCATC-ATTCT--AGCAAA-----------TTGCGGTGGATGG-GGTCAATTGAAAGGACGTGCACATAC---------
#=GS KwoMan/1-161 DE ASQF01000019.1:c166475-166301 Kwoniella mangroviensis CBS 8886 cont1.19, whole genome shotgun sequence
KwoMan/1-161                  -----------------------------------------------ACCCATACAATCCCCATCACT-----GAAAGGTTCTCGTTTTCTTTGTATCCACA---------ACGAGCGCT----CTC-AAATATGGGGAAAGATCAAACCCC------------ACTTCGTCTCATGGATTTCGGCTTT-ATTCT--TGCTT------------TTGCTGTGGATCA-GGTCGATTGAAGAGGCAAAGACAGATA--------
#=GS KwoBes/1-158 DE ASCK01000002.1:c1081492-1081301 Kwoniella bestiolae CBS 10118 cont1.2, whole genome shotgun sequence
KwoBes/1-158                  -------------------------------------------------------ACACCCCATCACT-----GAAAGGTTCTCGTT--CTT-ATACAATCACA-------ACGAGCGCT----CTC-AAATATGGGGAAAGATTAAACCCC------------ACTTCGTCTCATGGATTTCGACTTT-ATTCTTTGGCTT--------TTTCAAGCCGTGGATCG-GGTCGATTGAAGAGGCAAGGATATATC--------
#=GS KwoDej/1-165 DE ASCJ01000022.1:c145407-145229 Kwoniella dejecticola CBS 10117 cont1.22, whole genome shotgun sequence
KwoDej/1-165                  -------------------------------------------------------ATTCCCCATCACT-----GAAAGGTTCTCGTATG-----TACACACCCACG-----ACGAGCGCT----CTC-AAATATGGGGAAAGAATAAACCCC------------ACTTCGACTCATGGATTTCGGCTTT-GTTCT-TTGCCTTGAATAATATTTTCGGTGTGGATAA-CGTCGATTGACGAGTCAAGGATATCTC--------
#=GS KwoHev/1-197 DE ASQC01000174.1:21401-21587 Kwoniella heveanensis CBS 569 cont2.174, whole genome shotgun sequence
KwoHev/1-197                  --------------------------------------------------TCTTTATTCCCCCTAGAATTGTCGAAAGTCCTCGTCGGCGTCACGCACACCCCACG-----ACGAGAGCGCTTCACAACCAACGGAGGGATAGAATGACCAGCAA--------CACCGCGTCCCATGGATTTCGGCTT-GGTTCTTGTGCCTTCTCTTATCGAG-AGGTGTGGATCA-CGTCGATTGAAGGGGCACGGACATCGCTTCTTCTC
#=GS TriGue/1-194 DE BCJX01000002.1:c2257433-2257240 Trichosporon guehoae DNA, scaffold: scaffold_1, strain: JCM 10690, whole genome shotgun sequence
TriGue/1-194                  ----------------------------CACCTTTCCCCCCTCTCTACCCCATATACCTTCCCCACCACT---GAAGAGCACTAGCCGCGGCATCAGCCGTCAAATCCGGTCTGGGCTTTCATTTTGTGGAGGAAAGA--GCGAACA---------------------CGTCCCATGGATTTCGGCTT-GGACCT-TGGCACC------ATGTGTGCTCGTGGTTCG-CGTCGATTGAAGGGGCGCGGACATTTCAA------
#=GS ApiBra/1-201 DE JAMALJ010000009.1:588085-588285 Apiotrichum brassicae strain M2204 ctg_9, whole genome shotgun sequence
ApiBra/1-201                  ------------------------------TTTCCATTCACTCTTTCATCTCACCACTTCTCCCCACCACT--GAAGAGCACGAGTCGTGTCTGCACTTGTTGCAGTCAGTTCCGGCATGGGCTTTCATTATGTGGAGGAGAGAATGAACACCACCA-----------CGTCCCATGGATTTCGGCACCGG----CCGGCCTT---------TTGGCCAGTGGGTGGTCGCCGATTGAAGGGGCGGGGACATCTGTA------
#=GS CutOle/1-182 DE QKWL01000004.1:c2102705-2102524 Cutaneotrichosporon oleaginosum strain ATCC 20508 ATCC20508_contig04, whole genome shotgun sequence
CutOle/1-182                  -------------------------------------TCTCTTCTACTCATCCACACCCTTCCCCACCACT--GAAGACCGCTAGCCGGGCTACCAC----------------GGCCAGT-GGTTTCAATGTGTGAGGGATAAACCATCGCTTTCGGGCGTC-----ACGTCCCATGGATTTCGGCGCGGGTCTT--GGCTCT------------GCCCGTGG-TTCGTGTCGATTGAAGGGGCGGGGACACTGTACT-----
#=GS VanHum/1-202 DE QKWK01000004.1:c152841-152640 Vanrija humicola strain CBS 4282 CBS4282_scaffold04, whole genome shotgun sequence
VanHum/1-202                  --------------------TGACGTTGCCGTCCGCCCCCATCCTATTCCATCCCATCCCCGCTCACT-----GAAGAGCACTAGCCG-CCCCTTCC----------------GGCCAGA-GCTTTCATTTTGCGGAGGAGACAACAACTGTCCTAACACGACGGCCACGTTCCATGGATTTCGGCGCGACTCTT---GCCTC-----------GTGCTGTGGGTCTGTGTCGATTGAAGGAGCGGGGATATTATACCA----
#=GS TreFuc/33-236 DE LBGW01000269.1:18044-18279 Tremella fuciformis strain tr26 contig269, whole genome shotgun sequence
TreFuc/33-236                 CTAACGCTTCCCTTCACACTCGTCCCTACCCGAACTTCGAGCTCTGTGCTCTGGCACCCCCTTCTCACT----GAAGAGCGCTCGCCTT-ACCGAT-----------------GGCCCTC-GCTTTCATATTGTAGGGAGAGAACGATTT-----------------CCTTCCCATGGATTTCGGCGCT-GCC----GGCCTTCTC-----GTGAGGCGGTGGGTA-GCGTCGATTGAAGGGGCGGGCATAATTT--------
#=GS TreYok/1-204 DE BRDC01000026.1:c857114-856911 Tremella yokohamensis NBRC 100148 DNA, KCNB35TY.26, whole genome shotgun sequence
TreYok/1-204                  TGCTACTGCCCGGAGTGCCATCCGGGTCAATCTTCGTCCACCTTTGTGCTTTAGCACTCCCCACTCACT----GAAGAGCGCTCGCCTT-TCCGAT-----------------GGCCCTC-GCTTTCATAACGTGGGGAGAGAATTATTA-----------------CCATCCCATGGATTTCGGCGCT-GCC----GGCCTCCTT-----GTGGGGCGGTGGGTAT-CGTCGATTGAAGGGGCGGGTATATGTC--------
#=GS TreTag/1-206 DE CAJHEQ010000099.1:c3321-3116 MAG: Tremellales sp. Tagirdzhanova-0007 genome assembly, contig: TREM_99, whole genome shotgun sequence
TreTag/1-206                  -TTCACCTTTTCATGTATTCTTTGTCTGATTTTCGAAGTTCGATAAGCAAGTAGTAGCCTCATACA-------GAAAAGCGATTGCCAAAGCCACTCCAT-------------GGCAGTCAGCTTTCCAAGATTGGGGCAATAGCAATAT-----------------CCGTCCCATGGATTTCGGCGTGACT-----GGCGCC-------GAAGACGCAGTGGGTCC-TGTCGATTGAAGGAGCGGGGACAAGTCAT------
//

• Image source 8.3:

# STOCKHOLM 1.0
#=GF RW van Nues, September 2023
#=GF https://coalispr.codeberg.page/paper
Annot/1-13                        ------------------------------------------------------------------------------------------------------------------------------------------------GTGrGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGA-----------------------YAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS pre-HACAcnag13196/1-392 DE AE017348.1:c357100-356709 Cryptococcus neoformans var. neoformans JEC21 chromosome 8 sequence
pre-HACAcnag13196/1-392           ----------------------------------------------------------------------------------------------------------------------TTTCTTTGAACAATTTT----ACGGAGTGAGTGTACAACCTTACTTTTC------------------------------------------------------------------------------------------------------------------------------------------------------CCCATTAACCGTTGCTGACC---------TTCATCTTCTTGCAG--GACATAAAAGTTCGATTCCCTA-CCTTACTCCCGATGGAGGGTCTCGCGTTCCCGTCTCCAATAACGAAAAGAGGGGGGCC----------CAAGGGTCCTCTGTGTCTCTCCC-TGTGATAACCAAA-CAGTTTG---GCATCCCTATTATCCTTCCTTTAGCTGAATAT-----GAGGCGCCTGG-CTTTT-------GAG--------------CATGTGG--TGC-GATGACGTTCGGCGGGG----TTGTG-AGG-GGGTGTTTGGAAGACCGACATATCTTTAGCTTTATGTAATTTTTTTTACGACGATTATCGGCGGTGTCTTACTATGCGAACGATGCATCTTTTACAAGCGTGA--------------------------------------
HACAcnag13196-exon1/1-16          ----------------------------------------------------------------------------------------------------------------------------TGAACAATTTT----ACGGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS HACAcnag13196-exon2/1-232 DE ncrna 8:356789:357020:-1
HACAcnag13196-exon2/1-232         ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACATAAAAGTTCGATTCCCTA-CCTTACTCCCGATGGAGGGTCTCGCGTTCCCGTCTCCAATAACGAAAAGAGGGGGGCC----------CAAGGGTCCTCTGTGTCTCTCCC-TGTGATAACCAAA-CAGTTTG---GCATCCCTATTATCCTTCCTTTAGCTGAATAT-----GAGGCGCCTGG-CTTTT-------GAG--------------CATGTGG--TGC-GATGACGTTCGGCGGGG----TTGTG-AGG-GGGTGTTTGGAAGACCGACATAT----------------------------------------------------------------------------------------------------------------------
CNAG_13196-exon2/1-232            ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACATAAAAGTTCGATTCCCTA-CCTTACTCCCGATGGAGGGTCTCGCGTTCCCGTCTCCAATAACGAAAAGAGGGGGGCC----------CAAGGGTCCTCTGTGTCTCTCCC-TGTGATAACCAAA-CAGTTTG---GCATCCCTATTATCCTTCCTTTAGCTGAATAT-----GAGGCGCCTGG-CTTTC-------GAG--------------CATGTGG--CGC-GATGACGTTCGGCGGGG----TTGTG-AGG-GGGTGTTTGGAAGACCGACATAT----------------------------------------------------------------------------------------------------------------------
#=GS CNAG_13196/1-390 DE CP003833.2:827230-827619 Cryptococcus neoformans var. grubii H99 chromosome 14, complete sequence
CNAG_13196/1-390                  ----------------------------------------------------------------------------------------------------------------------TTTCTTTGAACAATTTT----ACGGAGTGAGTGCACATCCTTAATTTTCC-----------------------------------------------------------------------------------------------------------------------------------------------------TTCATTAGCCG-TGCTGACC---------ATCATCTTCTTGCAG--GACATAAAAGTTCGATTCCCTA-CCTTACTCCCGATGGAGGGTCTCGCGTTCCCGTCTCCAATAACGAAAAGAGGGGGGCC----------CAAGGGTCCTCTGTGTCTCTCCC-TGTGATAACCAAA-CAGTTTG---GCATCCCTATTATCCTTCCTTTAGCTGAATAT-----GAGGCGCCTGG-CTTTC-------GAG--------------CATGTGG--CGC-GATGACGTTCGGCGGGG----TTGTG-AGG-GGGTGTTTGGAAGACCGACATATCTTTTTAGCTCAGTATTTATTTTTCCTCGTCCATTATCGGTGTCTTTT--ATGGGTGCGATATATATTTTACAACTGTGA--------------------------------------
#=GS R265/1-392 DE CP025768.1:717897-718333 Cryptococcus gattii VGII R265 chromosome 10, complete sequence
R265/1-392                        ----------------------------------------------------------------------------------------------------------------------TTTCTTTGAACAATTTT----ACGGAGTGAGTGCACATCCCTACTTTTTCT----------------------------------------------------------------------------------------------------------------------------------------------------CGCATTAACCATTGCTGACC---------GTCATCTTCTTGCAG--GACATAAAAGTTCGATTCCCTAACCTTACTCCCGATGGAGGGTCTCGCGTTCCCGTCTCCAATACTGAAAAGAGGGGGGCC----------CAAGGGTCCTCTGTGTCTCTCCC-TGTGATAACCAAA-CAGTTTG---GCGTCCCTACTATCCTTCCTTTAGCTGAATAT-----GAGGCGCCTGG-CTTTC-------GAG--------------CATGTGG--TGC-GATGACGTTTGGCGGGG----TTGTG-AGG-GGGC-TTCGGAAGACCGACATATCTTTTAGCTTTTATGTATTTTTTGCTACTTG-CTATAGTTTGTTGTCTTCTGTGGATGCAGTGCA-TTTTTTATTATTGC--------------------------------------
#=GS WM276/1-395 DE CP000297.1:722343-722750 Cryptococcus gattii WM276 chromosome L, complete sequence
WM276/1-395                       ----------------------------------------------------------------------------------------------------------------------TTTCTTTGAACAATTTT----ACGGAGTGAGTGCACATCCCAACTTTTTCT----------------------------------------------------------------------------------------------------------------------------------------------------CGCATTAACCGTTGCTGAC---------TATTATCTTCTTGCAG--GACATAAAAGTTCGATTCCCTAACCTTACTCCCGATGGAGGGTCTCGCGTTCCCGTCTCCAATACTGAAAAGAGGGGGGCC----------CAAGGGTCCTCTGTGTCTCTCCC-TGTGATAATCAAA-CAGTTTG---GCGTCCCTACTATCCTTCCTTTAGCTGAATAT-----GAGGCGCCTGG-CTTTC-------GAG--------------CATGTGG--TGC-GATGACGTTTGGCGGGG----TTGTG-AGG-GGGCGTTTGGAAGACCGACATATCGTTTAGCTTTTATATATTTTTTGCTGCTTAGGTGTAATTTGGTGTGTACTGTGGTAGCAATGCAATTTTTTACTACTGC--------------------------------------
#=GS CryWin/1-392 DE CP034264.1:c966590-966074 Cryptococcus wingfieldii strain CBS7118 chromosome 4, complete sequence
CryWin/1-392                      ----------------------------------------------------------------------------------------------------------------------CTTCTTTGAACAAAATCC---ACGGAGTGAGTCTGCCCATATCCTTT--------------------------------------------------------------------------------------------------------------------------------------------------------CGCTTTGAGTCTTGCTGACCC----------------TTTCCAG--GACATAAAAGTTCGATTCCCTA---CTACTCCCGATGTTGGGTCTCGCGTTCCCGTCTCCAATAGTAAAAAGAGGGGGACTGT--------CGCAAGTCCCCTGTGTCCTTCCC-TGTGATAACCAAA-CCGCTTAG--GTGCTCCTGCTACTTCTATGCTCGTAACAAACATT--GAGGCGCCCGG-CT----------GGAAACAG---------CAAGTGG--CGC-GATGACGTTTGGCGGG---CATT-TGAAGGGGGGTGTCTGGAGGACCGACATACTTTTGTACTTTCATATCTGTTGCTTGCCATGCCCATGTATCCATCCCATCGTAACTCTTTGCAGCCATGGTTTCTGTTGC--------------------------------------
#=GS CryAmy/1-314 DE MEKH01000004.1:624092-624405 Cryptococcus amylolentus CBS 6273 supercont2.4, whole genome shotgun sequence
CryAmy/1-314                      -----------------------------------------------------------------------------------------------------------------------TTCTTTGAACAAAATCC---ACGGAGTGAGTCTGCCCATATCCTTT--------------------------------------------------------------------------------------------------------------------------------------------------------CACTTTGAGTCTCGCTGACCC----------------TTTCCAG--GACATAAAAGTTCGATTCCCTA---CCACTCCCGATGTTGGGTCTCGCGTTCCCGTCTCCAATAGTGAAAAGAGGGGGACTGT--------CGCAAGTCCCCTGTGTCCCTCCC-TGTGATAACCAAA-CCGCTTAG--GTGCTCCTGCTACTTCTATGCTCGTAACAAACATT--GAGGCGCCCGG-CT----------GGAAACAG---------CAAGTGG--CGC-GATGACGTTTGGCGGG---TATT-CGAAGGGGGGTGTCTGGAGGACCGACATACTTT-------------------------------------------------------------------------------------------------------------------
#=GS CryFlo/1-315 DE RRZH01000006.1:c952299-951968 Cryptococcus floricola strain DSM 27421 chromosome 6, whole genome shotgun sequence
CryFlo/1-315                      ----------------------------------------------------------------------------------------------------------------------CTTCTTTGAACAAAATCC---ACGGAGTGAGTCTGCTCATATCCTTT--------------------------------------------------------------------------------------------------------------------------------------------------------CACCTTGAGTCTTGCTGACCC----------------TTTCCAG--GACATAAAAGTTCGATTCCCTA---CCACTCCCGATGTTGGGTCTCGCGTTCCCGTCTCCAATAGTAAAAAGAGGGGGACTGT--------CGCAAGTCCCCTGTGTCCTTCCC-TGTGATAACCAAA-CCGCTTAG--GTGCTCCTGCTACTTCTATGCTTGTAACAAACATT--GAGGCGCCCGG-CT----------GGAAACAG---------CAAGTGG--CGC-GATGACGTTTGGCGGG---CATT-CGAAGGGGGGTGTCTGGAGGACCGACATACTTT-------------------------------------------------------------------------------------------------------------------
#=GS CryVH5/1-340 DE JANBXI010000016.1:41760-42099 Cryptococcus sp. VH57_BW 16, whole genome shotgun sequence
CryVH5/1-340                      -----------------------------------------------------------------------------------------------------------CATCTCATCCTTTTCCTTGAACAAATCTT---ACGGAGTGAGTCTGCCCCCCATACTTGCATCGTCGA----------------------------------------------------------------------------------------------------------------------------------------------CACAGAACACGGCGCTGACCA---------TCTATACGTTACAG--GACATAAAAGTTCGATTCCCTA-CCCTACTCCCGATGGAGGGTCTCGCGTTCCCGTCTCCAAGACTGAAAAGAGGGGGGCCGT--------CGCAGGCCCCCTGTGTCCCTCCG-TGTGATAACCAAA-CCGCTACG--GCGTTTCCTATTACCCCTATCCCTGCTGTACCC----GAGGCGCCTGG-CCCTC-------GTGG-------------CATGTGG--CGC-GATGATGTCTGGCGAGGA---TTGCGGGAGGAGGCGTCTG-AGGACCGACATTCT---------------------------------------------------------------------------------------------------------------------
#=GS CrySki/1-463 DE BCHT01000004.1:974777-975266 Cryptococcus skinneri DNA, scaffold: scaffold_3, strain: JCM 9039, whole genome shotgun sequence
CrySki/1-463                      ----------------------------------------------------------------------------------------------------------------------CTCCTTTGAACAATTT-----AAAGTGTAAGTTTCCCTTCACCTGCATCCCAAGGGCATGCTACCCTTCCTTCTCAATCCTATCCAAACGCTCGAGTGCT---------------------------------------------------------------------------------------------------ATAAAGACAATCAACTAACAAAA--------------TCTCCAG-GGACATAAAAGTTCGA-TCCCTA--CCAACTCTCGATGGAGGGCATCGCGTTCCCGTCCCCAAGACTGAACCTAGGGCCTGCAACGCAA--GCAGTTTTGCCCCGTGTCCTACCCG-GTGATATTCAATACCGCATCACTTCTTCCTATATCCATACTCGACGTGAAATACCTT-GGGAGGCGCCTGGTC-----------GGGATAATACCCGATA--GTGTGG--TGC-TATGATGGGTCGCGTTGGG-TTTTGGGGGAGA--GGTT-GGAGGACCGACAAATTTGGAGAATTATGATAGGATTTGCTTTGTGCTCTGTATTCTGTGCTCTGTATTCTTGGTATGAATGTGTTTTGCATATGT--------------------------------------
#=GS KwoSha/1-449 DE NQVO01000005.1:c272988-272532 Kwoniella shandongensis strain CBS 12478 scaffold00005, whole genome shotgun sequence
KwoSha/1-449                      ----------------------------------------------------------------------------------------------------------------------TCTCCTTGAACAATTTT----ACGGAGTGAGTTGAACTACCACCTTTTAGCATCTCATTCCCTGTCTCCCTTCCTGCCCTCCTACAAGACAGTCCATGATTCATCCTCCTACCAAACACTCTCGCACGCTGTTAC----------------------------------------------------------------AACTACACCCAATACTGACAA--TCTCCTTTCCCCCCCTTATAG--GACATAAAAGTTCGATTCCCTA-CCTAACTCTCGATGGAGGGTCTCGCGTTCCCGTCTCCAAGACCGATCA-AGGGGGAGTAACCTTCCAAAAAGGGCTTCTTTGGTTCTTTCCG-GTGATAACCAAAACCGTTAGCACGTCTCTCATTACCCCCTTCCCTTTTACCA-GACA--AGAGGTGGCCTGATCTC--------GAAAGGGA---------TATGTGGT-CGC-GATGATGTTTGGTGGGGATCGTTTTGGGGAGAGGCGTTAGGAGAACCCACATTTATACTATGTACTTATCA-----------------------------------------------------------------------------------------------------
#=GS KwoBes/1-422 DE ASCK01000002.1:c1106980-1106559 Kwoniella bestiolae CBS 10118 cont1.2, whole genome shotgun sequence
KwoBes/1-422                      ----------------------------------------------------------------------------------------------------------------ATCCTTCTTCTTTGAACAAAATCCT--ATGTGGTGCGTATACCCCTACATTTGCCCTCTCTCATCCCCCTCACCCACCTTCTACCCCTCCTCACTGCTCCTTCTCTCGCTCTCGACGTC--------------------------------------------------------------------------------------GAAAAAGAACCATGCTGA-TATCGTTGTTGGTCGTTGGTTACAG--GACATAAAAGTTCGATTCCCT--CTCTACTCCCGATAGAGGGTCTCGCGTTCCCGTCCCCTATACCAAATTAGTTTTAGGT-----------ATAGCACCTAATTGTCTTTCTCG-ATGATAACCAAA-TCGATAGGG-CGTTCTCAATGTTCC-CACTTGTTCAACTCGATA--GGAGGTGCTACCTCATCTCTTTA--GGGGGGTG--------TAGCGAAGG-CGC-GATGAAA-TTGAGTTGGATGATTT-GGGGAGGA-CGTCTGAAGGACCGACATACTTTTACTTGTAC----------------------------------------------------------------------------------------------------------
#=GS KwoMan/1-398 DE ASQD01000022.1:317159-317526 Kwoniella mangroviensis CBS 10435 cont2.22, whole genome shotgun sequence
KwoMan/1-398                      ------------------------------------------------------------------------------------------------------------------------TCTTCGAACAAAAAATCCTATGTGGTGAGTGTACTACCATTGCCTTTGTTTTCATTGTTAGCTATGGCATTACCCTCGTGCAGCGTACAATAACGTG----------------------------------------------------------------------------------------------------GAGAGAGACTTGAGCTGA-----TATTGTCTGCTTGATTTGTAG--GACATAAAAGTTCGATTCCCT--CTCTACTCTCGATAGAGGGTCTCGCGTTCCCGTCCCCTATACCAACTGTTTCTTAGGT--ACAA----CCAAACCCTAAATTGTCTTTCTCG-ATGATAACCAAA-TCGATACGG-CGTTCTCATTCCAACCACTTATCCCGACTCGATAC--GAGGTGCTACCTTGTCTCTTTATTGGGATAG----------AGCGAAG--CGC-GATGAAA-TTGAGCTGGAT-ATTT-GGGGAGGA-CGTCTGAAGGACCGACATTCTTTATTCT--------------------------------------------------------------------------------------------------------------
#=GS KwoHev/1-425 DE ASQC01000055.1:154361-154795 Kwoniella heveanensis CBS 569 cont2.55, whole genome shotgun sequence
KwoHev/1-425                      ----------------------------------------------------------------------------------------------------------------------TTCTTTTGAACAAAATCC---ATGTGGTCAGTATACCCCTACATTTCATCTTTTCCATCATTCATACGCTCTATTAGAGCTCATAATGACAACCACATCGGTTGTAGCTCCCGAACCATA-------------------------------------------------------------------------------CGAATTAATGCCAACTAA--TAACCCTCGTTGTCGTTTTTACAG--GACATAAAAGTTCGATTCCCT--CCTTACTCTCGATGGAAGGTCTCGCGTTCCCGTCCCCTATAATGACCATCGGGACCGTCCACAAAACGGTCCCTCGTCCTACTTTATTCCCG-GCGATAACCAAG-CTGT-AGTACCGTTCCCGTAGACCTCTCTTCTTTGCGCTCGT----AGAGGCGCCTGA-TCTTTTTTCCTGTAAAAGGGAAGAGGGGTACCGTGG--CGC-GATGA-G-TCGAGGGGGAAGATTG-GGGGAGAGCGGTT-GGAGGACATACAAA-----------------------------------------------------------------------------------------------------------------------
#=GS KwoDej/1-441 DE ASCJ01000022.1:c163939-163499 Kwoniella dejecticola CBS 10117 cont1.22, whole genome shotgun sequence
KwoDej/1-441                      -----------------------------------------------------------------------------------------------------ATCTTCTTCTTTCTTCTTCTCTTTGAACAAAATCC---ATGTGGTGAGCTTTCCCCTACCTTTTACGGACCATATGGAT-----------------------------------------------------------------------------------------------------------------------------------------CCATGGCCAAGCAGCTAACGATGTGAGTGTCAACGGTAACATAG--GACATAAAAGTTCGATTCCCT--CTTTACTCCCGATAGAAGGTCTCGCGTTCCCGTCCCCTATACCGATCTAGGGGTAAGATCCAAA----GTGACTTGCCCTGTGTCTTTCTCG-ATGATAACCAAA-TCGATGCGT-CGTTCTCACTACCT-CTAATCTTTCATCTCGATAC--GAGGCGCCTGACATCT-------GTGAAAGGATG------TAATGTGG--CGC-GATGAT-CTCGAGTGGGATTAGTTT-GGGAGGATGG-CTGAAGGACCGACATTCTTTAATTGGATGAATCCATTTTCAGGACTTGCTGTAACCTTTGTGAGTTGTATATAGTGATGGAAATT--------------------------------------------------
#=GS KocImp/1-438 DE NBSH01000018.1:c62993-62556 Kockovaella imperatae strain NRRL Y-17943 BD324scaffold_18, whole genome shotgun sequence
KocImp/1-438                      ---------------------TATCGACCTCGCGCCGCCGGCCGCCCGCATCCGGCAAAGCAGAAATGCCACGTCATGAAACAGGAGGTCAAAACTTTCAGACCTCGTCTCTTTCTTCCTTCTTTGAACAATAACCA--AGGTGGTGAGTGTGACCCATGGCATC--------------------------------------------------------------------------------------------------------------------------------------------------------GCATTGGGAAGCGACTGAC------TCTCGCTCTCGCTCGCCAG--GACACAAAAGTTCGATTCCTC--TCTTACTCTCGATGAGAGGTCTCGCGTTCCCGTCCCCCAGACTCGAAATGG--------------------------------TTTTCTCCGCGTGATAGCCAAA-CCGTCAAAG-CGTCTTGCAATGACCCGCTTGACCTCACTTTT---GGATCGTGCC-G-CTTTTTCTTT----GGC-----------------TGG--CGC-AGTGATGAAAGGGGGTTG--AGTC-GGTGCAAGGCGTC-GAGGAACCGACATGTCGATTGTCCATGCATAGTATTCTAGTAGATACCGGGTATAAAC---------------------------------------------------------------------------
#=GS PapLau/1-407 DE JAAZPX010000005.1:271871-272281 Papiliotrema laurentii strain IF7SW-F4 scaffold9_cov211, whole genome shotgun sequence
PapLau/1-407                      ----------------------------------------------------------------------------------------------------------------------CTCTTTAGAACAATTT-----ACGT-GTAAGTCGCCGGCCCACGCCCACATCCCACCTCACCCACCCATCCCCGTCTCCCCGTCACCTACCCAGCA-------------------------------------------------------------------------------------------------------CCACAGAGCACACGCTGA------------------TTCAGCAG-GGACATAAAAGTTCGATCTCCT--CCTTACTCTCGATGGAGGTCATCGCGTTCCCGTCCCCAAGA-CGAA-CGGTTCTGTGGCACGCTCCAAAAGCGGCATGGGCTGGTACCCCCCGGTGATAACCAAA-CCGATTATG-CGCTCCTCATTACACCCTCCCTTCTTTTACT-GCGCGGTCGA-TGCGCCTGCCCTTT--ACGGGG-------------AGCGTGG--CGC-GATGAGCCGCGCGAAAGAGGATTTTGGGGGGGAGTGCA-GGGGGACCTACAATTTTTATCGGTCGTCGACATGGTTTTTTTCCTTTG-------------------------------------------------------------------------------------
#=GS PapTer/1-425 DE JAHXHD010000004.1:c2424-2000 Papiliotrema terrestris strain LS28 scaffold-3, whole genome shotgun sequence
PapTer/1-425                      -------------------------------------------------------------------------------------------------------------------------TTTAGAACAATTTT----ACGT-GTAAGTCGAGCCGGATCCTTCCCTGTCCCCCAGCCTTCGGGTGCCTCTTGGCGGTGTATCCCACATGCATCGTCCCCGTTCG-------------------------------------------------------------------------------------------CTTGTCCGTCGTCGAAGAGCAG----------TGCTCACTCCAG-GGACACAAAAGTTCGATCTCCT--CCTTACTCCCGATGGAGGTCATCGCGTTCCCGTCCCCAAGACCAACCCGACCGTCCGGCATGTCTTTACAGCGGACGG--CGGTCCTTTCCGGCTGATAACCAAA-CCGTCTTATATGCTCTCCGCTACCTACTCCGTACAACCCAT-----GGACGTGCCTGT-TCGCTCTC--ACGGGC----------GAAAATGTGC-GCGC-GAGGATAT-GGGTTGTTGGAATT--AGGGGGGAGTGTATGGAGGACCCACACGTTGTACTCGTAGTCCAGCTCTTGTTGTTATGTACC------------------------------------------------------------------------------------
#=GS CryFla/1-460 DE CAUG01000665.1:c163978-163519 Cryptococcus flavescens NRRL Y-50378 WGS project CAUG00000000 data, contig NODE_2199_length_286162_cov_45_720577, whole genome shotgun sequence
CryFla/1-460                      --------------------------------------------------------------CTCCCTCTTACCGTCTGGCCGCCCTACAAAAGTTGAGCGAAACTGGTCTGCATCTTCTCTTTAGAACAATTTT----ACGT-GTAAGTCGAGCGATATCCCACCCCCTCCCATTCCCGGCCCCAGGCCGTCTCTGAGCCATGGAGATCACTACCGCCGTCCCCGCGCAGACGAACACCGC---------------------------------------------------------------------------TCAAACGAGCCGCGCTGA--------------------TCCCAG-GGACACATAAGTTCGATCTCCT--CCCTACTCCCGATGGAGGTCATCGCGTTCCCGTCCCCAAGACCAACCCGACCGTCCGGCATGTACTTACAGCGGGCGG--CGGTCCTTTCCGGCTGATAACCAAA-CCGTCTTATATGCTCCTCGCTACCTACTCTACACGACCCCA-----GGATGCGCCTGTTCCGCTTTC--ACGAGCG--------GAAAGGTGTG---CGC-GAGGATA-GGGGTTGTCTGAGCT--AGGGGGGAGTGTATGGAGGACCCACACTTTGT-------------------------------------------------------------------------------------------------------------------
#=GS TriGue/1-366 DE BCJX01000002.1:2636025-2636390 Trichosporon guehoae DNA, scaffold: scaffold_1, strain: JCM 10690, whole genome shotgun sequence
TriGue/1-366                      --------------------------------------------------------------------------------------------AGATTCAAACGCGCGCATCTCTAAGTCTTCTTTGAACAAAATCC---ACGG-GTGAGTCGAGCCTACTACCTTGAGCGC--------------------------------------------------------------------------------------------------------------------------------------------------TTGGGACAACGTCGCTGACCACG--------------TCTACAG-AGACATAAAAGTTCGATTCCCT--CCTTACTCTCGGTAGAGGGTCTCGCGTTCCCGTCTCCAAGACCAA---GGGTGGCCGTCTCCT-CAAAGAGGGGGCGGCCCACGTCCTCGCGGCTGATAACCAAA-CCGCAAAGC-TGCCCTAATACCCGCCGTGCGGCCCC-----------GAGGCGCCCG--CTCTT-----ACGAGC-----------------TGAGGCGC-GACGAC---GGGCCAAGCGG--CGACG-TGGGGGTGGTCGGGGGACCAACATTTGTAGCTTTTCTGAGGGTGACTTTGTG--------------------------------------------------------------------------------------------
#=GS VanHum/1-399 DE QKWK01000004.1:299621-300019 Vanrija humicola strain CBS 4282 CBS4282_scaffold04, whole genome shotgun sequence
VanHum/1-399                      ---------------------------------------------------------------------------------------------------GCCCAGGACCATCAGGTGTTAAAGTTGAACAAAATCC---ACGG-GTGAGTTTGAGACGATATGGTCGCTGCGACGACGCTGCCAGGGCCGCCAGCTCCCTCCCC-----------------------------------------------------------------------------------------------------------------TTCCTTCACAGCCGCTGACGCCCC--------------TCCCAG-AGACATAAAAGTTCGATTCCCT---CCCACTCTCGATGTTGGGTCTCGCGTTCCCGTCTCCAAGACCTAAACGGAGGGTCCCCT---------CGCAGGGGCTCTGGTCTGCCCA--GCGATAGCCAAG-CTGG------CGCACTTCTAATAGCCCGGTATATCTGCCCC------GAGGTGCCCG---TTCC-----GCAAGGA--------------TCTGCGGCGC-GACGAC---GGGCAGTGTG--CCGGAGCTGGGGGTGCT-GGCGG-CCGACATTTGTAGCGCGCCACGGGGGATTGGTGGTGCTGGTTGTATTGT------------------------------------------------------------------------------
#=GS TriOvo/1-366 DE WEIQ01000023.1:440509-440961 Trichosporon ovoides strain 2NF903A scaffold23-size702783, whole genome shotgun sequence
TriOvo/1-366                      ----------------------------------------------------------------------------------------------------------------------CTTCTTTGAACAAAATCC---ACGG-GTGAGTTGTGACCGTCTTGGTCT------------------------------------------------------------------------------------------------------------------------------------------------------ACGACCGGGCTGCGCTGAC-------------------GACCAG-AAACATAAAAGTTCGATTCCCT-----TCTCTTCGGTGTTGGGTCTCGCGTTCCCGTTTCCAAGAACGAACCGAGGGGGGCTT----------CGCAGCCCTCTGTGTCTGCACC--GT-CTAAACG-----GCTTG---CGTCTTCATGTCAAGTCAATCCTGCACC----------AGGCGCCCG--CCTTC-------GGG----------------TGTGAGGCGC-GATGATCTGCGGGATTGC---TTGGTCCGAGG--CGTT-GGCAGACCGACATTTGTATCTTCTGTACTTGACTATGCTCTATTCCG-TCATGCATGCTTGAACTCTGAAAACTTTGTCGCATGAACACACGAAA--------------------------------------
#=GS TriInk/1-372 DE QAEE01001966.1:1344-1866 Trichosporon inkin strain ATCC 18020 NODE_2001_length_2889_cov_6.15078_ID_80714, whole genome shotgun sequence
TriInk/1-372                      ----------------------------------------------------------------------------------------------------------------------CTCCTTTGAACAAAATCC---ACGG-GTGAGTCGCGGCCGTCTTGGTGGCTG---------------------------------------------------------------------------------------------------------------------------------------------------CAGCGGGAGCTTGGCTGA-----------------TGATCCCAG-AAACACAAAAGTTCGATTCCCT-----TCTCTTCGGTGGTGGGTCTCGCGTTCCCGTTTCCAAGAACGAACCGAGGGGGGCTT----------CGCAGCCCTCTGTGTCTGCACC--GT-CTGAACG-----GCTTG---CGTCTTCATGCCGAGTCAATCCTGCACT----------AGGCGCCCG--CCTTC-------GGG----------------TGTGAGGCGC-GATGACCTGTGGCATTGC---TTGGTCCGAGG--CGTT-GGCAGACCGACATCCATCTGTATCTTCTGTACTCTGCTCTCTCATGCATGCTTCTCTGGAAACTTTTGTCGCACTGAGCAGCACCTGTGCTGGCG--------------------------------------
#=GS TriAsa/1-368 DE SCGW01000509.1:2750-3192 MAG: Trichosporon asahii isolate N5_275_008G1 N5_275_008G1_scaffold_698, whole genome shotgun sequence
TriAsa/1-368                      ----------------------------------------------------------------------------------------------------------------------CTTCTTTGAACAAAATCC---TTGG-GTGAGTTTTGACCTATGTGGTCGG-----------------------------------------------------------------------------------------------------------------------------------------------------CACTGGGGATGCAGCTGAC------------------AACGCAG-AAACATAAAAGTTCGATTCCCT-----TCTCTTCGGTGTTGGGTCTCGCGTTCCCGTTTCCTAGAATGAACCGAGGGGGGCTT----------CGCAGCCCTCTGTGTCTGCACC--GT-CTAAACG-----GCTG----CGTCTTCATGCCAAGTTAATACTGCACT----------AGGCGCCCG--CCTTC-------GGG----------------TGTGAGGCGC-GATGACCTGTGGAATTGC---TTGGTCCGAGG--CGTT-GGCAGACCGACATTTGTAACCTTTGTACCACTGTTTTTCTTGCTACATGTATTCAGTTCTGTGACTTTTGCTGCGTCCGTTTCGAAAGCTGTTGC--------------------------------------
#=GS TriCor/1-476 DE JXYL01000003.1:c1444590-1444115 Trichosporon coremiiforme strain JCM 2938 scaffold_0003, whole genome shotgun sequence
TriCor/1-476                      ---------AGACAGCCGGACATGAGTGAGAGTGCGAGCGAACGGGGCGAACTATGGCGGGACCAAACCGGCAGGCTCAGCGGTCCATAAATTCGTGGACGCGCTGCATCCTCGAGTTCTTCTTTGAACAAAATCC---ACGG-GTGAGTTTTGACCTACTTGGTCGA-----------------------------------------------------------------------------------------------------------------------------------------------------AGCTAGAGCTGCAGCTGACG------------------ACGCAG-AAACATAAAAGTTCGATTCCCT-----TCTCTTCGGTGTTGGGTCTCGCGTTCCCGTTTCCAAGAACGAACCGAGGGGGGCTT----------CGCAGCCCTCTGTGTCTGCACC--GT-CTAAGCG-----GCTG----CGTCTTCATGTCAAGTTAATACTGCACT----------AGGTGCCCG--CCTTC-------GGG----------------TGTGAGGCGC-GATGACCTGTGGAATTGC---TTGATCCGAGG--CGTT-GGCAGACCGACATTTGTATCCTTTGTACTGCTTTTTCCGCACAATGTATCGATTTCTCTGAACTTTTTGAACTTTCGCTGCATCCTTTTCAAGT---------------------------------------
#=GS CutOle/1-334 DE QKWL01000005.1:1268000-1268333 Cutaneotrichosporon oleaginosum strain ATCC 20508 ATCC20508_contig05, whole genome shotgun sequence
CutOle/1-334                      ----------------------------------------------------------------------------------------------------------------TTCTCGCTTCTTCGAACAAAATCC----TGG-GTAAGTTTGCGGCATTCTTGGCCGTGCTACTCGTTGCTGTGCACCCTTCAGTGGTTCACAGCGACGAGCGCAGGCG-------------------------------------------------------------------------------------------------TTACAGAGCATCCGCTGAC--------------------TGCAG-AAACATAAAAGTTCGATTCCCTA--CCTACTCCCGATGGAGGGTCTCGCGTTCCCGTTTCCTATAGCGA-TG--------------------------------GTCTTGCCC---GGTGATAGCCAAA-CTGCGTG---CGCTCCTGCTACACCCCATGTCTTTGCGCC-------GAGGCGCTCG--CCCTC-------GGGC-----------------TGAG-CGC-GACGACTCGCGGA-----GGCGTGCGGTGGGGGGTGAC-GGCGGACCGACATTCAACGT-----------------------------------------------------------------------------------------------------------------
#=GS CutDas/1-368 DE BEDX01000004.1:1347085-1347452 Cutaneotrichosporon daszewskae DNA, scaffold: scaffold_4, strain: JCM_11166, whole genome shotgun sequence
CutDas/1-368                      -------------------------------------------------------------------------------------ACCGAGCACAAAACTCGGCTCGCACCTTTGATGAATCTTTGAACAAAACATA--ACGG-GTGAGTAGCGCATTGCTTCA---------------------------------------------------------------------------------------------------------------------------------------------------------TCTCAAAGCTCCAGCTGACG-------------------TCCAG-AGACATAAAAGTTCGATTCCCTG--CCTACTCTCGATGGAGGGTCTCGCGTTCCCGTCTCCAAGACCGACTG--------------------------------GTGCGTCCC---GGTGATAGCCAAA-CTGCATG---TGCCTTCTTTAGCCCC-ATGACT--GCCCC-------GACGCGCCC---CCTTC-------GGGT---------------TGTGG--CGC-GACGACGGGTGGAA----GTGGCCGGTGTGAGGGTGCT-GGTGTACCGACATTTGTACGACTTGCCTTGTATTAATCGTTATGGATGTGGATTTCTGCTAAGACCGAAACTCGAGCTCTG----------------------------------------------------
#=GS CryGC2/1-447 DE JALPCC010000032.1:c9984-9538 Cryptococcus sp. GC_Crypt_2 iso00_70_32, whole genome shotgun sequence
CryGC2/1-447                      ----TTCACGTTTGATGAGAATACGTTAGGCGCGTCAATCAACAGGAAAGATCGGAATAACACGTCATGAGTTTCGCCCTGCGCACCCATATAAACTGGAACATTCCTGTTTCTCTTTCTTCTTTGAACAAATCC----ATG--GTATGTTATCCCCACCCAACCCTTCAC--------------------------------------------------------------------------------------------------------------------------------------------------ATCTTGTGCTCAAGCTAAC-----------------TTTATCAGTGGACATTAAAGTTCGATGCCTTA-CCTCACTCTCGATGGAGGGTATCGCGTTCCCGTCTACTAGATAGAGTGGAGTTG-----------------GAAAAA---GTTCCGGCC-----TGTCTGTAAAA-----------CGTCTCTTTATTCTGTTTTCTCGACTTT--------GGAGGCGCCTG--GCGT------AAAAGCA--------------TGTGG--TGC-TATGATAGAGTT--------GGGGGATAGTGGGGC-----GTGGACCTACACTTTTTAATTGTTTAGTTCAATTTCGTAATCTTGATGTATCGTCAATGTGGTCTACTTG--------------------------------------------------------------
#=GS NaeEnc/1-519 DE MCFC01000038.1:59402-59920 Naematelia encephala strain 68-887.2 BCR39scaffold_38, whole genome shotgun sequence
NaeEnc/1-519                      --------------------------------------------------------------------------------------------AAATCGATCGTTTTCAACTTTTTCTCTTTCTTTGAACAAAACAA---ATGG-GTACGTCTATACCTCATATTTCCTCCCCACTATACATCTCTCTCATTGCTAGGTGACCCGGCACCTATCTGCTCCTCTCCCCCACTTCACTCTCCCATTTCGTCCTCCAAAAGAAAGCATGACCCCTTCGAAGCCCTATTCTCAAATCTTCCTCTACCACCTACCTATTTACAAAGTCTTCCTTGACCTGAA-------TACTAACCCCCCTCTTAG-GCACATTAAAGTTCGACTCCCT--CTCTACTCGCGATAGAGGGTTTCGCGTTCCCGTTCCCAAGACTAAATCTCACG------------------GCTCCCC---CGCGTGATACC----CAAACCGAA-CCGCTTTC--CAACCTTGCCTTTAAAAAGCAGGGACTCTCTTCCAGAGCTCCGTAAGATGTGCCC-------GGCTCTTTGTAGCA----TGTGGCACGAGGATGACGGGT--CTGGTTGTTTTAGAGTGGAAAGTGTT-GGAGAATCGACATTTTCTTTTCTTTTCTTTTTGCT--------------------------------------------------------------------------------------------------
#=GS NaeAur/1-500 DE JAKFAO010000004.1:848600-849099 Naematelia aurantialba strain NX-20 Contig4, whole genome shotgun sequence
NaeAur/1-500                      -----------------------------------------------------------------------------------------GACTGAATGTTTTCGCTCGACGTCTTCTACTTCTTTGAACAAAACAAAC-ACGG-GTACGTTGTGTCTTCCATATGTTCAGTCCATGTCTCCACTCCTCACCGTTCACTGCCTCGGCTCACTCTTCTCATCCTTGTCTTATCGCTTCTCCCTCTCTTGCTACTCCTCGCTGTCTGCCGTTTCTTCTGCTGCTGCCACTCGCCGTCTTT--------------------TGCCCCCAGCCTCGCTGACCCGAG-----------------TAG-GCACATTAAAGTTCGACTCCCT--CTCTACTCCCGATAGAGGGTTTCGCGTTCCCGTTCCCAAGAGCGACCTTTGCAGG--------------CGATTCTCC---CGCGTGATACC----CAAACCGAC-GCGCTTTCCATGCTCCTAGCGAGCTCTCTCTCGAGACTCTGT---AAGAGGCGCCCGG-CTCTC------GTAGCA--------------TGTGGCGCGAGGATGACGGGT--CTGGAG----TCGAGTGGAAAGTGCT-GGAGAAGCGACATGCCGTGTTTCATAGCTGTGTCGCTCTTGAGCGCACCATG---------------------------------------------------------------------------------
#=GS TreTag/1-514 DE CAJHEQ010000032.1:c43265-42752 MAG: Tremellales sp. Tagirdzhanova-0007 genome assembly, contig: TREM_32, whole genome shotgun sequence
TreTag/1-514                      TCTAGGCAATCATTGAACGAAATGCAGCAACGCGTTGAAATTAAAGGCATCCCAATTTCCGGGTCACGTGAGTCCCCCCTTGTTTAATCTGCGAAAAATTCTGCTCTCCGCTTTCTTTCTCTTCAGAACAATTTTTT--TCGG-GTCAGTCCACCGATACAAAGAGAT-----------------------------------------------------------------------------------------------------------------------------------------------------CTCTCCGCCTTGAGCTGACACC-----------TCGCTCATCAG-GTACACAAAAGTTCGAGATCCA---CCCAAAATCGATGGAGGGTCTCGCGTTCCCGTCCCCAAAATCGAATCAAGGATGCGCTACCGCTCGTCCGGGTCTCCC--CGAGTGTTAGC----CAAACCGAA-----------TGTGTCTCCTTTTTCCTGTTCCGAGTCTTTCAC-----GAGCGCCTGG-CTTCT---------GCA--------------CGTGG--TGC-GATGAAGGT-GGACGAGGAATTTGG---AGGGGATGCT--GGGAACCGACATGTCATCTTTTTGCTTAGTCATGGACTGGGTGATGCAGAATTTTCTCCATGATGTTCTTTATATTATAGAGTGTTACGTCGCCGGTCTAGTA-----------------------------
#=GS TreYok/1-456 DE BRDC01000026.1:844626-845081 Tremella yokohamensis NBRC 100148 DNA, KCNB35TY.26, whole genome shotgun sequence
TreYok/1-456                      -----------------------------------------------------------------------CTCCCTCCCCTGCGCGCTTCGAAATTCTGGTTTGGTGCTTCTGTCTTCTTCTTTGAACAATTTA----AAGG-GTGAGTTGGAGCTTTACTATCTCCCCCAGCCTCCCAGAAGCCTCTGCATCGAGCCTCTCCACAGACCAATCTGACTGACCTGTGCAAACACATCTTTGGACCCGACG------------------------------------------------------------------TCGTCGTTCCAGAGCTGA--------------------CCGCAG-GGACATAAAAGTTCGATTCTCC--TCTTACACC--ATGAGGAGTCTCGCGTTCCCGTCCCCTAGACCAACGCTCGCCGGGGGG-------AACCCTCGGCAGATGTCTTCCAGG---GCGATAACCAAGCTCGATGG---CGTTCTCGTTACACCTCTCTCTGCGTC---GGAGGACTGGGCGCCTGG-TCATCCCTTTCGGGGG----TTTGGCA----TGTGG--TGC-GATGAG---CCCGGCTGGAGAGACGG-TGGGGGGCGTCTTGGAGACGGACATCCACTTCAGA--------------------------------------------------------------------------------------------------------------
#=GS TreFuc/1-463 DE BRDD01000107.1:c230510-230048 Tremella fuciformis NBRC 9317 DNA, KCNB80TF.107, whole genome shotgun sequence
TreFuc/1-463                      ----------------------------------------------------------------CTTCCCCTCCCTCCCCTGGCGCGCTGCGAAATTCTGGTTTGGTGCTTCTTTCTTCTTCTTTGAACAATTTA----AAGG-GTGAGTCAGAGCTTTACTACCATCCCCAGCCTCCCAGAAACCTCTGCATGAGACCTCTCCACAGGCCCACCTGAGCGACCTGTTCAAACACATCTTTCGACCGGACG------------------------------------------------------------------TCATCGTTACAGAGCTGA--------------------TTACAG-GGACACAAAAGTTCGATTCTCC--TCTTACACC--ATGAGGAGTCTCGCGTTCCCGTCCCCTAGACCAACGCTCGCCGGGG-------AACAACCTCGGCAGATGTCTTCCAGG---GCGATAATCAAGCTCGATGG---CGTTCTCGCTACACCTCTCTCTGCGTC---GAAGGACGGAGCGCCTGG-TCATCCCTTTCGGGGG----TTTGGCA----TGTGG--TGC-GATGAG---CCCGGCTGGAGAGACGG-TGGGGGGCGTCTTGGAGACGGACATCCACTTCAGA--------------------------------------------------------------------------------------------------------------
#=GS TreMes/1-461 DE SDIL01000010.1:276877-277337 Tremella mesenterica strain ATCC 28783 supercont1.10, whole genome shotgun sequence
TreMes/1-461                      ------------------------------------------------------------------------------GCCTCTCCCCCCTTTCTTCGGATCGAAACTTTTTCTCTTTCTTCAGTGAAC----------CGGG-GTGAGTGATCTTTCCATTTGACAATACTTTCTCCATCTCCTATCATAGCACTCTCCGGTCTGAAAGCTTGGTATTCGACTATATCACAGTGATCTGAAAGCGCATAATGGAAAGAAGCT------------------------------------------------------ACTATGAAGAAGAGCTGAC-------------------TCTCAG-GGACATAAAAGTTCGATTCTCC-CCTCTACGCC--ATGAGGAGTCTCGCGTTCCCGTCCCCCATATTGACCGTCTTCACGG-------------------------------------CGATAACCAAGCT-GTT-----CGTACTTCCCTTTTGACCCTTTTTCAATTTT-GAGGATAAGCGTCTGACATTC-----GTGAGAGTGTA-----------TGTGA--TGC-GATGAG---ACTTATTGAAGGAATCGTCGGGTGGTATT-TGAAGACGTACATTTTTCTGTGATCCAACCTCAATCATCGATCGTGCTTTCCTTTTCATTTC-----------------------------------------------------------------------
#=GS VanFra/1-509 DE BEDY01000006.1:1167431-1167939 Vanrija fragicola DNA, scaffold: scaffold_6, strain: JCM 1530, whole genome shotgun sequence
VanFra/1-509                      --------------------------------------------------------------------------------------------------TGGTCAGTAGTACTCCTTACGGCAACTGA-CGCGCGCCG--ATGG-GTGGGTGGCGTGTCCATTTACACGTGGCATTGTATGTGGAATTGATAAGCGTCGCCCAATTTGCCTCCGCTCGCCCTCCCCTCGCACCGCTGCAGCCGTATAAAATAATCGCGAGCA--------------------------------------------------------ACACAGTGACTCCCTTGAACAAAAAA------------TCCATGGAGACACTAAAGTTCGAGCCCCG--TCCTACTCTCGATGGGGGGGTTCGCGTTCCCGTCTTCTATATCGACCGAGGGGGAG---CTTCGCAGCTCTCCGTGTCC-GTCCCGGTGATACC--CAAACCGAGCGCG-------CTCCCACTTTTTCACCGACGCTCATCCAACCTGCCCCGAGGCGCCCGCCGCAA---------GGC-----------------TGAGGCGC-GAAGAC-----TGGTGGGGAGTCGACGTGGGGGGTGACTGGCGGACCGACATTTCTATTGTACTGCTCTACTCTTTTTAATGTGTTTATGGATGTTTGCGGAAACTGCTTTGGGCATGCTGCGTGGACTGAGC---------------------------------------
#=GS ApiBra/1-383 DE JAMALJ010000008.1:113514-113896 Apiotrichum brassicae strain M2204 ctg_8, whole genome shotgun sequence
ApiBra/1-383                      --------------------------------------------------------------------------------------------------------GCATCCAGTCTTGTTTCCTTTGAACAAAACC----AAGG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGACACAAAAGTTCGATACCTT----CTACTCAATA-GAGGGATAACGCGTTCCCGTCTCCAAGACGAAAAAGAGGAGGG---TGTCGCAACCCTCTGTGTCCTGTCCCGGTGATACC--CAAACCGTG-----------CG--CATCTCTCAACCCCCAGCCCATTCTATCCCTC-GAGGCGCCCCCCGTAC--------GGA-----------------GCGCGGCGC-GACGAC----AGGGATACGGGTTACGGGGAGGGGTG-CCGGCGGACCGACATTTAGTACGATGAAATTGATTATGTTTGTGAGACGTGAGCGGTGAAGAGATGGGGGAGAGGAGCTTTGGTGAAGACTGTTGTGACCACACTGTAGAGTTTGTTGAGATTTTCGTTGCTGGG
//

• Image source 9.1:

# STOCKHOLM 1.0
#=GF RW van Nues, September 2023
#=GF https://coalispr.codeberg.page/paper
#=GS HACAcnag04334/1-155 DE HACAsnoRNA-in-3UTR-CNI021507-155nt XM_024657822.1 AE017349.1:598671-598825 Cryptococcus neoformans var. neoformans JEC21 chromosome 9 sequence
HACAcnag04334/1-155         --------CAGGCTCTTTCGAAGCCCCTCTGTGTCGC---ACTTCACGGTCAGAGGGGTCAAAAAGTAAGCCAAAAAAGA---ACGTAATACA----------AGATA----TTCTAGCC-TTGTT-TATTCCTCTATGTCTGCTTAT------GCCACAGA-CAAAGAGTTATGCTTAAAGGAGACACGTC------------------------------------------------------------------------------------------------
#=GS R265/1-155 DE CP025766.1:c584552-584398 Cryptococcus gattii VGII R265 chromosome 8, complete sequence
R265/1-155                  --------CAGGCTCTTTCGAAGCCCCTCTGTGTCGC---ACTTCACGGTCAGAGGGGTCAAAAAGTAAGCCAAAAAAGA---ACGTAATACA----------AGATA----TTCTAGCC-TTATT-TATTCCTCTATGTCTGCTTAT------GCCACAGA-CAAAGAGTTATGCTTAAAGGAGACATTTC------------------------------------------------------------------------------------------------
#=GS WM276/1-155 DE CP000293.1:684394-684548 Cryptococcus gattii WM276 chromosome H, complete sequence
WM276/1-155                 --------CAGGCTCTTTCGAAGCCCCTCTGTGTCGC---ACTTCACGGTCAGAGGGGTCAAAAAGTAAGCCAAAAAAGA---ACGTAATACA----------AGATA----TTCTAGCC-TTATT-TATTCCTCTATGTCTGCTTAT------GCCACAGA-CAAAGAGTTATGCTTAAAGGAGACATTTT------------------------------------------------------------------------------------------------
#=GS in-CNAG_04334/1-156 DE 40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11, mitochondrial XM_012196349.1 CP003828.1:c594828-594671 Cryptococcus neoformans var. grubii H99 chromosome 9, complete sequence
in-CNAG_04334/1-156         --------CTGGCTCTTTCGAAGCCCCTCTGTGTCGC--ACTTACACGGTCAGGGGGGTCAAAAAGTAAGCCAAAAAAGA---ACGTAATACA----------AGATA----TTCTAGCC-TTGTT-TATTCCTCTATGTCTGCTTAT------GCCACAGA-CAAAGAGTTATGCTTAAAGGAGACATTTC------------------------------------------------------------------------------------------------
#=GS CryWin/1-159 DE CP034273.1:372227-372385 Cryptococcus wingfieldii strain CBS7118 chromosome 13, complete sequence
CryWin/1-159                --------TAGGCTCTTTCGAAGCCCCTCTGTATCGC---TTCATACGGTCTGAGGGGTCAAAAAGTAAGCCAACAGAAA---ACGTAATACATC--------AGATA----TTCTAGCC-TCGTT-TTATCCTCTATGTCTGCT-AT---ACCGCCACGGG-CATAGAGTTATGCTTAGAGGAGACACCTT------------------------------------------------------------------------------------------------
#=GS CryFlo/1-159 DE RRZH01000014.1:c686042-685884 Cryptococcus floricola strain DSM 27421 chromosome 13, whole genome shotgun sequence
CryFlo/1-159                --------TAGGCTCTTTCGAAGCCCCTCTGTATCGC---TTTATACGGTCTGAGGGGTCAAAAAGTAAGCCAACAGAAA---ACGTAATACATT--------AGATA----TTCTAGCC-TCGTT-TTATCCTCTATGTCTGCT-AT---ACCGCCACGGG-CATAGAGTTATGCTTAGAGGAGACACCTT------------------------------------------------------------------------------------------------
#=GS CryAmy/1-159 DE MEKH01000012.1:352779-352937 Cryptococcus amylolentus CBS 6273 supercont2.12, whole genome shotgun sequence
CryAmy/1-159                --------TAGGCTCTTTCGAAGCCCCTCTGTATCGC---TTCATACGGTCTGAGGGGTCAAAAAGTAAGCCAACAGAAA---ACGTAATACATT--------AGATA----TTCTAGCC-TCGTT-TTATCCTCTATGTCTGCT-AT---ACCGCCACGGG-CATAGAGTTATGCTTAGAGGAGACACCTT------------------------------------------------------------------------------------------------
#=GS KwoSha/1-161 DE NQVO01000011.1:485976-486137 Kwoniella shandongensis strain CBS 12478 scaffold00011, whole genome shotgun sequence
KwoSha/1-161                --------CCGGCTCTTTCGAAGCCCCTTTGTATCGC---TCCTCACGATCAGAGGGGTCAAAAAGTAAGCCAACAGACA---ACGTAATACAAA--------AGATA----TTCTAGCC-TCGTT-ATATCCTCTCTATCTGCT-ATCAT-AAGCCACAGA-CGAAGAGTTATGCTTAGAGGAGACATCCA------------------------------------------------------------------------------------------------
#=GS KwoHev/1-189 DE ASQC01000068.1:c147289-147100 Kwoniella heveanensis CBS 569 cont2.68, whole genome shotgun sequence
KwoHev/1-189                --------ACGGCTCTTTCGAAGCCCCCTTGTATCGC-TATCCACACGATCGAGGGGGTCAAAAAGAAAGCCAACATAGA---ACGTAGATCATCAAACTTGATGATA----GTTTAGCC-TCATTTATATCCTCTTTTTCCAGACAAAATTCAACCACGGATTGCAGAGTTATGCTTGGAGGAGACACAACAAACACTCGGTACT----------------------------------------------------------------------------------
#=GS CryVH5/1-160 DE JANBXI010000001.1:253710-253869 Cryptococcus sp. VH57_BW 1, whole genome shotgun sequence
CryVH5/1-160                -----CCCCCGGCTCTTTCGAAGCCCCTCTGCATCGC---TCTCTACGATCCGAGGGGTCAAAAAGTAAGCCAACAAAAT---ACGTAATACATC--------AGATA----TTCCAGCC-TCGTT-TTATCCTCTTTGCCCACCTAT-------CCACGGG-CGGGGAGTTATGCTTTGAGGAGACACTTAT-----------------------------------------------------------------------------------------------
#=GS KwoMan/1-178 DE ASQF01000006.1:c353057-352880 Kwoniella mangroviensis CBS 8886 cont1.6, whole genome shotgun sequence
KwoMan/1-178                --------CAGGCTCTTTCGAAGCCCCCTCGTATCGCTTTCTTATACGATCAAGGGGGTCAAAAAGAAAGCCAACATGAA---ACGTTCAAAATAGGATACCCATCTTGTTCAATGAACCCTCATTATATTCCTCTCTACATAGATTATTAT--CCCACATA-TAGAGAGTTATGCTTAGAGGAGACATCCC------------------------------------------------------------------------------------------------
#=GS CryGC5/1-158 DE JALPBZ010000254.1:c4046-3889 Cryptococcus sp. GC_Crypt_5 iso00_58_254, whole genome shotgun sequence
CryGC5/1-158                -----CACCTGGCTCTTTCGAAGCCCCTCTGCATCGC---CTTTCACGATCTGAGGGGTCAAAAAGAAAGCCAAAAGAAA---ACGTGACACAATATCG-------------TCCTAGCC-TCGAT-TATTCCTCGACGCTCACTCAT-------TCACGAG-CGTAGAGTTATGCTTAGAGGAGACAAACT------------------------------------------------------------------------------------------------
#=GS CryGC7/1-161 DE JALPBX010000009.1:144286-144446 Cryptococcus sp. GC_Crypt_7 iso00_79_9, whole genome shotgun sequence
CryGC7/1-161                -----CCACTGGCTCTTTCGAAGCCCCTTTGCATCGC---CTTCTACGATCAGAGGGGTCAAAAAGAAAGCCAAAAGAAA---ACGTAACATGATAAACG------------TTCTAGCC-TCGATTTATTCCTCGACGCTCACTCAT-------TCACGAG-CGCAGAGTTATGCTTAGAGGAGACAACTAC-----------------------------------------------------------------------------------------------
#=GS KwoDej/1-168 DE ASCJ01000046.1:341242-341409 Kwoniella dejecticola CBS 10117 cont1.46, whole genome shotgun sequence
KwoDej/1-168                -----TCCCTGGCTCTTTCGAAGCCCCCTCGTATCGC---TATTCACGATCAAGGGGGTCAAAAAGTAAGCCTAAATGGA---ACGTCGACAGATTCCAATCTG--------TCCAAGCC-TCATTATATTCCTCTTTATTT-CTCATTC----GCTACAAA-CAAAGAGTTATGCTTAGAGGAGACATCTGAC----------------------------------------------------------------------------------------------
#=GS CryGC3/1-160 DE JALPCB010000117.1:c33104-32945 Cryptococcus sp. GC_Crypt_3 iso00_45_117, whole genome shotgun sequence
CryGC3/1-160                -----CACCTGGCTCTTTCGAAGCCCCTCTGCATCGC---CTCTCACGATCTGAGGGGTCAAAAAGAAAGCCAACAGAAT---ACGTAGCGAAATAACG-------------CTCTAGCC-TCGAT-TATTCCTCGACGCTCACTCAT-------CCACGAG-CGTAGAGTTATGCTTAGAGGAGACAACCTAC----------------------------------------------------------------------------------------------
#=GS KwoBes/1-170 DE ASCK01000031.1:252860-253029 Kwoniella bestiolae CBS 10118 cont1.30, whole genome shotgun sequence
KwoBes/1-170                -----CCGCAGGCTCTTTCGAAGCCCCCTCGTATCGC---TCCTCACGATCAAGGGGGTCAAAAAGTAAGCCAAAATAGA---ACGTCGATAGGATACCCA------TCTTATTCAAGCC-TCATTATATTCCTCCTTATTTAGATTGT---ACACCACATA-TAGGGAGTTATGCTTAGAGGAGACATCCT------------------------------------------------------------------------------------------------
#=GS CryGC2/1-214 DE JALPCC010000077.1:31653-31866 Cryptococcus sp. GC_Crypt_2 iso00_70_77, whole genome shotgun sequence
CryGC2/1-214                --------CAGGCACTTTCGAAGCCCCT-TGAATCGC----TTTCCCGGTTCATGGGGTCAAAAAGT-CGCCAACATGACCACTCGTTACAGAAATACGTTTCAG----TATCGCAGACC-TCATTTATTTCTCCTTATCCACACTT--------TCACGGG-TATCGAGATATGCTTTGAGGATACATATATCAGTCGTAGGCTATATGATGTGATGCATTATTTGAACACGATACATGCG----------------------------------------------
#=GS CutDas/1-199 DE BEDX01000002.1:2280485-2280683 Cutaneotrichosporon daszewskae DNA, scaffold: scaffold_2, strain: JCM_11166, whole genome shotgun sequence
CutDas/1-199                ----GCCCACGGCACTTTCGAAGCCCCCCTGCG-TGC---TCCTCCACGCTGCGGGGGTCAAAAAGT-CGCCAACATCAATCCCCGTACTCGGTCTCTGACAG---------AGACGGCC-TCGTTATATTCCTTCCAGGCGACG-------CCCGCTCGGC-CTGGGGGGTATGCTTAGAGGGCACATCTACATCATTCTCAAGTCCGGTCGCCGTAACCCACAG--------------------------------------------------------------
#=GS TreTag/1-150 DE CAJHEQ010000757.1:c3967-3818 MAG: Tremellales sp. Tagirdzhanova-0007 genome assembly, contig: TREM_757, whole genome shotgun sequence
TreTag/1-150                --------ATGGCTCTTTCGAAGCCCTTCGGAGTCGT---CTCTCCCGATCCGAGGGGTCAAAAAGTAGGCCAACATGA----ACTCTATTTTTCCTCA-----------AATATTACTC-GCCGC-TCTCATAAAAAGGGT-------------CCACGGG-CGGAGAGTTATGCTTAGAGGAAACATTCG------------------------------------------------------------------------------------------------
#=GS NaeAur/1-149 DE JAKFAO010000002.1:575195-575343 Naematelia aurantialba strain NX-20 Contig2, whole genome shotgun sequence
NaeAur/1-149                --------CCGGCTCTTTCGAAGCCCCTTCACACCGC---ATTCACCGGGCGAAGGGGTCAAAAAGTAAGCCAACAGT-----GCCATACCCCACGAGGT-------CCTTGTTTATTCC-TC-----TATCCCTCCTT--------------CTCCACGGG-CACAGAGTTATGCTTAGAGGGCACATCTGA-----------------------------------------------------------------------------------------------
#=GS NaeEnc/1-166 DE MCFC01000006.1:c212855-212690 Naematelia encephala strain 68-887.2 BCR39scaffold_6, whole genome shotgun sequence
NaeEnc/1-166                --------TCGGCTCTTTCGAAGCCCCTTCACACCGC---AGTCACCGGGCGAAGGGGTCAAAAAGTAAGCCAATAGT-----ACCACACCTCACGAGGT-------CCTCGTATATTCC-TC----TTCTCCCCCTT---------------CACCACGGG-CCTAGAGTTATGCTTAGAGGACACATCTTATCTGGCCTTTTGCCTTG------------------------------------------------------------------------------
#=GS VanFra/1-172 DE BEDY01000002.1:c913067-912896 Vanrija fragicola DNA, scaffold: scaffold_2, strain: JCM 1530, whole genome shotgun sequence
VanFra/1-172                --------TAGGCACTTTCGAAGCCCCTCTG-TCTGC---TTTTTCCAGGCTTGGGGGTCAAAAAGT-CGCCAACATTGAGCAAACTCGCGATTCGCACCCAAGAGGTCGGGCCGAGTCC-TCGTTA-TATTTCTAGCCAGTGTCGTT------CACCCGAT-TGGCCAGTTATGCTTAGAGGAGACATCTCTT----------------------------------------------------------------------------------------------
#=GS VanHum/1-262 DE QKWK01000005.1:c414061-413800 Vanrija humicola strain CBS 4282 CBS4282_scaffold05, whole genome shotgun sequence
VanHum/1-262                ------GCCCGGCGCTTTCGAAGCCCCTCTGCC-TGC--TACCCCCAGACACGAGGGGTCAAAAAGTACGCCAACAGCGA--CCCCCCGCGCGGCGG--CCACGCGCCGCCGCCGG-GCC-TTGTT--TATTCCCCGCGTGTGGGCT--------CCACCGC-CTGCGGGTTATGCTTAGAGGGGACAGACTTGTATCGTCGATGGGTGTGTCATTGCGTCGTTGGTACTGTGTCGTCGATGGAATGTTGTCATTGTTGCGCTGGCTGCTACTGTACACTCTTTTCTG
#=GS CrySki/1-171 DE BCHT01000009.1:536624-536796 Cryptococcus skinneri DNA, scaffold: scaffold_8, strain: JCM 9039, whole genome shotgun sequence
CrySki/1-171                --------ACGGCTCTTTCGAAGCCCCTTTGTATCGC-----CATACGATCAAAGGGGTCAAAAAGTAAGCCAATATTCACCCTTCGACAGTCCCCCCTACGGGAGGGGATTGCACGACC-TCATT--TATTTCTTGAGATCCAAGTTTCT----CCCTGAT-TCTCTAGATATGCTTTGAGGGGACATTTT------------------------------------------------------------------------------------------------
#=GS CutOle/1-191 DE QKWL01000001.1:c3832297-3832107 Cutaneotrichosporon oleaginosum strain ATCC 20508 ATCC20508_contig01, whole genome shotgun sequence
CutOle/1-191                ------CTGCGGCTCTTTCGAAGCCCCT-CGCTCTGC-----TCACCAGGCCGAGGGGTCAAAAAGA-TGCCAACAT-CCAACCAACCCAGCCCACCACAATAGGCGGCCGGG----TCC-TCGTCAGT-TCCGTCTTTGCGCC-----------TTACGCA--GAGGGGGTATGCTTAGGGGGGACATGATCTACAGACGACAATGCATGGCCTGAATATTGG----------------------------------------------------------------
#=GS KwoDej-b/1-181 DE ASCJ01000046.1:340680-340860 Kwoniella dejecticola CBS 10117 cont1.46, whole genome shotgun sequence
KwoDej-b/1-181              ATACCGACACGGCTCTTTCGAAGCCCCCTT-TTCTGC--CATTCACAGATTCAGGGGGTCAAAAAGAAAGCCAACATACAA--ACGTATGATGATCA-------------TTTCATCGCC-TTAGTCAAATACAATTCCATCCGAACTTG-CCAATTACCAGAATGAGGAATATATAATAAGGAGACATTCATTCCCCATC---------------------------------------------------------------------------------------
#=GS KwoBes-b/1-202 DE ASCK01000031.1:252380-252581 Kwoniella bestiolae CBS 10118 cont1.30, whole genome shotgun sequence
KwoBes-b/1-202              -----CACACGGCTCTTTCGAAGCCCCCTTATC-TGC--CTCCCACAGATACAGGGGGTCAAAAAGTAAGCCCAAAAAAT---ACGTATACAAATAAACAAAATCG----TATCTAAACC-TTGATTTCCACCGAAAGTTTTCTTGAG------CTCATAAG-CTGGAGGATATAATATGAGGAGACATCTTTCTTACCTTATCGTTCATATAGGCGTACTAAAG---------------------------------------------------------------
//

• Image source 10.1:

# STOCKHOLM 1.0
#=GF RW van Nues, September 2023
#=GF https://coalispr.codeberg.page/paper
#=GS HACAcnag12924/1-178 DE ncrna 10:426811:426989:1  >AE017350.1:426811-426988 Cryptococcus neoformans var. neoformans JEC21 chromosome 10 sequence
HACAcnag12924/1-178         ---------CCGCATCTCA-TGTGTACACTGTTCTCGCCCAAACCCAGGGGTCCAGTGATAGGAATGGATGCTATAG-TGAGGAACACTAGTTCGTGCT-------------------CAGCTTCCTCCGGGCTTCA-TTGTCTGGCG-----TGC-TTC-TTTTGCGCCTTTTACCTTTTCGTAAT----------------------------------AAGTTGCCAGGAAGGGGAATGCACATTTT------------------------------------------------------------------------------------------------------------------------------------------
#=GS CNAG_12924/1-178 DE CP003829.1:c605249-605072 Cryptococcus neoformans var. grubii H99 chromosome 10, complete sequence
CNAG_12924/1-178            ---------CCGCATCTCA-TGTGTACACTGTTCTCGCCCAAACCCAGGGGTTCAGTGATAGGAATGGATGCTATAG-TGAGGAACAGTAGTTCGTGCT-------------------CAACTTCCTCCGGGCTTCA-TTGTCTGGTG-----TGC-TTC-TTCTGCGCCTTATACCTTTTCGTAAT----------------------------------AAGTTGCCAGGAAGGGGAATGCACATTTT------------------------------------------------------------------------------------------------------------------------------------------
#=GS WM276/1-180 DE CP000289.1:c1813404-1813225 Cryptococcus gattii WM276 chromosome D, complete sequence
WM276/1-180                 ------ACCCTGCATCTCA-TGTGTACACTGTTCTCGCCCAAACCCAGGGGTTCAGTGATAGGAATGGATGCTAAAG-TGAGGAACACTAGTTCGTGCT-------------------CAACTTTCTCTAGGCTTTA-TTGTCTGGTG-----TGC-TTC-TTTTGCGCCTTTTACCTTTTCGTAA-----------------------------------AAGTTGCCAGGAAGGGGACTGCACATCTT------------------------------------------------------------------------------------------------------------------------------------------
#=GS R265/1-181 DE CP025760.1:c1761035-1760855 Cryptococcus gattii VGII R265 chromosome 2, complete sequence
R265/1-181                  -----CATCCTGCATCTCA-TGTGTACACTGTTCTCGCCCAAACCCAGGGGTTCAGTGATAGGAATGGATGCCAAAG-TGAGGAACACTAGTTCGCGCT-------------------CAACTTTCTTCAGGCTTTA-TTGTCTGGTG-----TGC-TTC-TTTTGCGTCTTTTACCTTTTCGTAAT-----------------------------------AGTTGCCAGGAAGGGGACTGCACATCTT------------------------------------------------------------------------------------------------------------------------------------------
#=GS CryVH5/1-198 DE JANBXI010000004.1:191087-191284 Cryptococcus sp. VH57_BW 4, whole genome shotgun sequence
CryVH5/1-198                GACAACACCCTGCATTGCATTGTGTACACTGTTCTCGCCT-AACCCAGGGGTCCAGTGATAGGAATGGATGCTAGAC-TGAGGAACACTAGTTCGCGCT-------------------CGACCTTCTCCAGACTG----TGTCTGCTC-----CAACTACTTTATGCGGC-ATTTTTTGCCCGCAAG-----------------------------------AGCAGTGAGGAGGCTGACTGCACATCACTTTTCTTGTCTTCA----------------------------------------------------------------------------------------------------------------------------
#=GS CryFlo/1-171 DE RRZH01000005.1:872653-872823 Cryptococcus floricola strain DSM 27421 chromosome 5, whole genome shotgun sequence
CryFlo/1-171                ---------ACGCAACT-A-TGTGTACACTGTTCTCGCCTT-ACCCAGCAGTCCAGTGATAGGAATATTTGCCATAA-TGAGGAACCTTTGTTCGTGCT-------------------TCACTTCCTCT-GGCCTT--TTGGCTGGT------TGCGCTATCTCTGTGCTTTTAACGC-CTCGGAGA-------------------------------------TGGCCAGGAAGTGGACTGCACATCTT------------------------------------------------------------------------------------------------------------------------------------------
#=GS CryWin/1-194 DE AWGH01000001.1:c936650-936457 Cryptococcus wingfieldii CBS 7118 supercont1.1, whole genome shotgun sequence
CryWin/1-194                ---------ACGCAACT-A-TGTGTACACTGTTCTCGCCTT-ACCCAGCAGTCCAGTGATAGGAATATTTGCCATAA-TGAGGAACCTTTGTTCGTGCT-------------------TCACTTCCTCT-GGCCTT--TTGGTTGGTG------GCGCTATCTCTGTGCTTTTAACGC-CTCGGAGA-------------------------------------TGGCCAGGAAGTGGACTGCACATCTTTGTAGCTTTGTATGTAGAATATG-------------------------------------------------------------------------------------------------------------------
#=GS CryGC3/1-213 DE JALPCB010000095.1:62672-62884 Cryptococcus sp. GC_Crypt_3 iso00_45_95, whole genome shotgun sequence
CryGC3/1-213                ----GCAGACCGCATC-ACATGTGTACACTGTTCCCTACGTCTCCCAGGGGAACAGTGAAGAATATGGATGCTACAC-TGAGAAACACTAGTTTGCGCTTGA----------------TCGTCCCTCCAAACGTCCGCGTTTGGGGTA----TCGTGCTCTTTTTCGTACCGTTCTTCATTGGGCTT-------------------------ATCTCGTCGAAGGGGCCAAGAGGTCAAATGCACATTCCCACCAATTCTCCCA----------------------------------------------------------------------------------------------------------------------------
#=GS CryGC5/1-213 DE JALPBZ010000185.1:7850-8062 Cryptococcus sp. GC_Crypt_5 iso00_58_185, whole genome shotgun sequence
CryGC5/1-213                ----GCAGACCGCATC-ACATGTGTACACTGTTCCCTACGTCTCCCAGGGGAACAGTGAAGAATATGGATGCTACAC-TGAGAAACACTAGTTTGCGCTTGA----------------TCGTCCCTCCAAACGTCCGCGTTTGGGGTA----TTGTGCTCTTTTTCGTACTGTTCTTCATTGGGCTT-------------------------ATATCGACGAAGGGGCCAAGAGGTCAAATGCACATCTCTCTACCCATCCTAC----------------------------------------------------------------------------------------------------------------------------
#=GS CryGC7/1-213 DE JALPBX010000076.1:c31069-30857 Cryptococcus sp. GC_Crypt_7 iso00_79_76, whole genome shotgun sequence
CryGC7/1-213                ----GCAGACCGCATC-ACATGTGTACACTGGTCCCTACGTTTCCCAGGGGATCAGTGAAGAATATGGATGCTACAC-TGAGAAACACTAGTTTGCGCTTGA----------------TCATCCCTCCAAACGTTCGCGTTTGGGGTA----TCGTGCTCTTTTTGG-ACTGTTCTATA-CGG---------------------------------CGTTTAATGGGCCAAGAGGTCAAATGCACATCTCCACCATAGTCTCTGTCTATTTTTG------------------------------------------------------------------------------------------------------------------
#=GS VanFra/1-210 DE BEDY01000001.1:841810-842019 Vanrija fragicola DNA, scaffold: scaffold_1, strain: JCM 1530, whole genome shotgun sequence
VanFra/1-210                ---------ACGCATC-GCGTGTGTACACTGTTCCCTGTAACCTCCAGGA-TCCAGTGAAGAAAACGGGTGCAACAA-TGAGGACCTTTGGTCGCTGCTGTA----------------TTGTTTGACGGGGCATGTGTCCTGTAGATG----TCGGCCAACGTGCTCTGAAAGAGTAGCCCTGGGGTT---------------AGGCCCCGGTTGGTTGTTGGTCGGCCTTGAGCTGCGCTGCACATTTCTAGTCTT-----------------------------------------------------------------------------------------------------------------------------------
#=GS KwoSha/1-262 DE NQVO01000017.1:c159418-159157 Kwoniella shandongensis strain CBS 12478 scaffold00017, whole genome shotgun sequence
KwoSha/1-262                -------CCACGGCATTCA-TGTGTACATTGTTCCCTACGTCTCCCAGGGGTTCAGTGATAGGAATGGATGCCAAAC-TGAGGAACACTAGTTCGCGCTCAA----------------CCTTTCCTTCAAGCAATCAAGCTTGGTTGA----CTCTTTTCTGTGCCGTTTATTCTGTCTCGAAGAGGGTT---------AGGAAGTTGAGAGCACATCTCTTCATAGAATATATATAGAATGCATATGGAATACATGTAACACAGATATTGCCCGTTCTTCTTTCTCTCTTTTTCACCTT----------------------------------------------------------------------------------------
#=GS KwoHev/1-255 DE ASQC01000004.1:446013-446267 Kwoniella heveanensis CBS 569 cont2.4, whole genome shotgun sequence
KwoHev/1-255                ---------CCGCATCTCA-TGTGTACACTGTTCTCTCCATACCCTAGGAGTTCAGTGATAGGAATGGATGCTATAC-TGAGGTGACATCATGTCCGCTCTTATTCTCCACCCAGATCCTAGTGAGATCTCCTTCGGGAACTCCCTGGGATCTTCCACCTT-TGAAAAAT--CCGAGTTTGCTTGGC----------------------GCAGGAATTGAAGGCGGTAGGGGAATCTAAGAGCACATATAATCTCTCTTTTCTCGCATTTGCTTCAGGCGATAGTTTAGCT-------------------------------------------------------------------------------------------------
#=GS KwoMan/1-239 DE ASQF01000013.1:c168560-168322 Kwoniella mangroviensis CBS 8886 cont1.13, whole genome shotgun sequence
KwoMan/1-239                ---------CCGCATCCGATTGTGTACACTGTTCTC-CCATCTCATC---------TGTTTGCTAT--CTGCATCAGATGAG-AATCAACGAGTCCAGTGATAGTAATGGATGCTATACTGAGGTACCATAAGGTCGTGCTTGGGTTTCCTACGAAT-CATT-GAAAAA-CTTCGGTTATTTGATGATTTGACTCTTCTGTTATATACTTTTGAAAGATGGAAGAGACTGGAGATCCGACTGCACATCACACACACATATGTAT----------------------------------------------------------------------------------------------------------------------------
#=GS KwoBes/1-273 DE ASCK01000013.1:556090-556362 Kwoniella bestiolae CBS 10118 cont1.13, whole genome shotgun sequence
KwoBes/1-273                --CCCCTCACCGCATCCGAATGTGTACACTGTTCTC-CTATCCCATC-----TC----TCTTC-----ACGAG-TCGATGTGGAATCCACGAGTCCAGTGATAGTAATGGATGCTAGACTGAGGTACCATACGGTCGTGCTTGGATATCCTACAAAT-CATT-GATCAG-CTTCGGTTGTTTCGGTGGTTTGGCTCGCTTGTCATTTCTT-CGA--GATGGGAGAGTTGGGGGATTCGACTGCACATTTCATGTATAGACATATTGGTTTATTTGGGTAATATCGGTCTTGAGACGC-------------------------------------------------------------------------------------------
#=GS TreFuc/1-214 DE LBGW01001711.1:c12361-12148 Tremella fuciformis strain tr26 contig1711, whole genome shotgun sequence
TreFuc/1-214                ---------CCGCACCT--TTGTGTACACTGCTCCTAGCAT-CCACTGG--TTCAGTGATAGGAAAAGGTGCGATAT-TGAGGACCCTCGGTCGCGCTCGCCGTCCCT-CTCGCTGTACGATCGGCCTCCGGCGTGC---------------------------------------------------------------------------------------GGCTCGAGATGGCGACTGCACACTGATTCTACGGCACGGCGTCGTCTCACCAGTACTATCGAGAAAGAGTATGCATGGTGTCTCACAAATGAG-----------------------------------------------------------------------
#=GS TreYok/1-209 DE BRDC01000046.1:c135631-135423 Tremella yokohamensis NBRC 100148 DNA, KCNB35TY.46, whole genome shotgun sequence
TreYok/1-209                ------ACGACGCACCT--TTGTGTACACTGCTCCTAGCAT-CTACTGG--TTCAGTGATAGGAAAAGGTGCCATAT-TGAGGACCATCGGTCGCGCTCGCCGTCCCTACTCGCTGTGCGACTCCCGTCTGTCGAAC---------------------------------------------------------------------------------------GGCCAGAGATGGCGACTGCACATATCGTACGACCAGAAACTTCTCTCGCATTCTCCT--CGAAATTCAGTATGCATCGCGTCTTGA------------------------------------------------------------------------------
#=GS TreMes/1-280 DE SDIL01000102.1:35110-35319 Tremella mesenterica strain ATCC 28783 supercont1.102, whole genome shotgun sequence
TreMes/1-280                ---------CCGCACCTAA--GTGTACACTGTTCCTAGCATTCTACTGG--TTCAGTGATAGGAACAGGTGCTATAT--TCATTTATTTATACTCGACTTGGACTCTCCTC---CCCGAGATTCGTGTGTCTCGGGC---------------------------------------------------------------------------------------GGAT-GAGACTGTG-CCGACATTTCTTCCATCAGCA-TGATATGCTCTTCTCCTGACACGTTAGTAGTATTTCGGAGATACGAATAAACATAGTACACGGAGACTGGGAACAAAAACCAGATACATGCATCCTCATGAAAGTGAGAGATAGATTACACAGTTTC
//

• Image source 10.3:

# STOCKHOLM 1.0
#=GF RW van Nues, September 2023
#=GF https://coalispr.codeberg.page/paper
#=GS HACAcnag12894/1-168 DE HACAsnoRNA-168nt-as-CNAG_12894 ncrna 10:765212:765380:-1 AE017350.1:c765379-765212 Cryptococcus neoformans var. neoformans JEC21 chromosome 10 sequence
HACAcnag12894/1-168           ------------------------------------------------------------------------------------------------------------------------------------AGAATCAA-TCAA-TTGTACG-TGATCCCG---TTATTGTGGATCCTGGGGA-ACAACTGC----------------------AATGCCCAGAGATCTCTACAGGAG-GATCTAGAGTCGTCGAGAGA-CA--TA-AGACAGGA----CGTCTAGCCGGGGCATTTTGC---TGT-TGTGGTGTGCT--TGGCCTGAGTTCTGCCTACATAC-----------------------------------------------------------------------------------------------------------------------------------
#=GS from-CNAG_12894/1-168 DE 10:267246-267414:1 (+168) CP003829.1:267247-267414 Cryptococcus neoformans var. grubii H99 chromosome 10, complete sequence
from-CNAG_12894/1-168         ------------------------------------------------------------------------------------------------------------------------------------AGAATCAA-TCAA-TTGTACG-TGATCCCG---TTATTGTGGATCCTGGGAC-ACAACCGC----------------------AATGCCCAGCGATCTCTACAGGAG-GATCTAGAGTCGTCGAGAGA-CA--TA-AGACAGGA----CGTCTAGCTGGGGCATTTTGC---TGT-TGTGGTGTGCT--TGGCCTGAGTTCTGCCTACATAC-----------------------------------------------------------------------------------------------------------------------------------
#=GS R265/1-168 DE CP025767.1:c719685-719518 Cryptococcus gattii VGII R265 chromosome 9, complete sequence
R265/1-168                    ------------------------------------------------------------------------------------------------------------------------------------AGAATCAA-TCAA-TTGTACG-TGATCCCG---TTATTGTGGATCCTGGGAC-ACAACCGC----------------------AATGCCCAGCGATCTCTACAGGAG-GATCTAGAATCGTCGAAAGA-CA--TA-AGACAGGA----CGTCTAGCCGGGGCATTTTGC---TGT-TGTGGTGTGCT--TGGCCTGAGTTCTGCCTACATAT-----------------------------------------------------------------------------------------------------------------------------------
#=GS WM276/1-168 DE CP000294.1:c736412-736245 Cryptococcus gattii WM276 chromosome I, complete sequence
WM276/1-168                   ------------------------------------------------------------------------------------------------------------------------------------AGAATCAA-TCAA-TTGTACA-TGATCCCG---TTATTGTGGATCCTGGGGC-ACAACCGC----------------------AATGCCCAGCGATCTCTACATGAG-GATCTAGAATCGTCGAAAGA-CA--TA-AGACAGGA----CGTCTAGCCGGGGCATTTTGC---TGT-TGTGGTGTGCT--TGGCCTGAGTTCTGCCTACATAT-----------------------------------------------------------------------------------------------------------------------------------
#=GS CryVH5/1-190 DE JANBXI010000041.1:43015-43204 Cryptococcus sp. VH57_BW 41, whole genome shotgun sequence
CryVH5/1-190                  ----------------------------------------------------------------------------------------------------------------------------TTCTTCTTTGAATCAAA-----TTGTAT-GTGGTCCCG---TTATTGTGGATGCTGGGGG-ACACTCG------------------------GTACCCAAACATCTCTACAAGAG-GATCTAGACAAAGTCTATTGACA--CACGGACAGGA----CGTCTAGCCGGGGCATTTTTC---CACA-GTGGTGTGCT--TGGCCTGAGTTTTGCCTACACGTTTATACGTTTCAATAGC------------------------------------------------------------------------------------------------------------------
#=GS CryGC5/1-297 DE JALPBZ010000092.1:c8820-8524 Cryptococcus sp. GC_Crypt_5 iso00_58_92, whole genome shotgun sequence
CryGC5/1-297                  ----------------------------------CGCGCACCCCTGAGCACCCATTCTTTCACCCAGTCACCCACGCATTCGGCTGGGGTATATAATCCGGTCGACGAACATCATCTTCGTCTCTTCTTCTTTGAATCAAA-----TTGTAT-ATGGTCCC--CTTTATTGTGGCAGTACGAGGCAGACCCG-------------------------ACCCCGTACAGCTCTATCAGGGAGACCTCGACCGAGTCTGTTGACGATTAAAGACGGGACT--TGTCTAGCCGAACCAATCTCA---TTTGTATGGTGTGC--TCGGCCTGTGTTCTGCCTACAGTTCAATCTTGTACAGTAGATGTTCCTGTA--------------------------------------------------------------------------------------------------------
#=GS CryGC3/1-234 DE JALPCB010000063.1:23903-24136 Cryptococcus sp. GC_Crypt_3 iso00_45_63, whole genome shotgun sequence
CryGC3/1-234                  -----------------------------------------------------------------------TCACCCCCTCGGCTGGAGTATATAAGTAGGTCGATGGACAACATCTTCGTCTGTTTCTTCTTGAATCAAA-----TTGTAT-ATGGTCCCA---TTATTGTGGCAGTACGAGGCAGACCCG-------------------------ACCCCGTACAGCTCTATCAGAGTGACCTCGACCGAGTCTGTTGACGATCAAAGACGGGACT--TGTCTAGCCGAACCAATCTCA---TTCGTATGGTGTGC--TCGGCCTGTGTTCTGCCTACAGTTCA---------------------------------------------------------------------------------------------------------------------------------
#=GS CryGC4/1-237 DE JALPCA010000965.1:c1015-779 Cryptococcus sp. GC_Crypt_4 iso00_46_1000, whole genome shotgun sequence
CryGC4/1-237                  -----------------------------------------------------------------------------------------------------------CTCTGTCTACACCCATCTTCTTCTTAG--TTAAA----ATTGTAT-ATGATCTCG---TTATTGTAGCTTCATTTCGGGCTGTACTT-----------------------ACCCATTGTCGCTCTACAAGAA-GATCTAGAA-GATGAGAATCTCA-TT--AGACAGGATT-TATGTTAGCCGTCTCA----GCAATTTAGAATGG-ATGGGTTCGGCCTGGGTCCTGACTACATATATTTTATAGATGCATCGTTGTTCAATTGCTTACTTGTTTGCTTG---------------------------------------------------------------------------------------
#=GS NaeEnc/1-185 DE MCFC01000124.1:c24295-24111 Naematelia encephala strain 68-887.2 BCR39scaffold_124, whole genome shotgun sequence
NaeEnc/1-185                  -----------------------------------------------------------------------------------------------------------------------GTTCTGTTGACTCAG--TCAAATTAAATTGTAT-GTGAGCCCAA-TTTATTGTGGCAGTCTGTAGGTATCCCG-------------------------ACCACAGATCGCTCTACAGGAG-GCTCTAGAGAAGTGAGG-TCTCA--TATAGACAGGAT---TGTTTAGCCGGAGC---TCTCGGTTCAA-GTGGGAGCTTATCGGCCTGGGTTTTGCCTACATAA-----------------------------------------------------------------------------------------------------------------------------------
#=GS CryFlo/1-187 DE RRZH01000005.1:c1190381-1190195 Cryptococcus floricola strain DSM 27421 chromosome 5, whole genome shotgun sequence
CryFlo/1-187                  ------------------------------------------------------------------------------------------------------------------------------TCTTCTTGAATCAAA-----TTGTATA-TGGTCCCG---TTATTGTGGATCCTGGGCGTAGCACCGTCTCCTTTGGGGTCGGTGTT--CAGTGTCCAGTGATCTCTACAGGAG-GATCTAGAGCGAAATT-----CA--TA-AGACAAGA----CGTCTAGCCGGGGCACTGTG--ATTT-CTGTGGTGTATT--TGGCCTGAGTTTTGACTACAT-------------------------------------------------------------------------------------------------------------------------------------
#=GS CryAmy/1-189 DE MEKH01000005.1:415057-415245 Cryptococcus amylolentus CBS 6273 supercont2.5, whole genome shotgun sequence
CryAmy/1-189                  ------------------------------------------------------------------------------------------------------------------------------TCTTCTTGAATCAAA-----TTGTATA-TGGTCCCG---TTATTGTGGATCCTGGGCGTAACACCGTCTCCTTTGGGGTCGGTGTT--CAGTGTCCAGTGATCTCTACAGGAG-GATCTAGAGCGAAATT-----CA--TA-AGACAAGA----CGTCTAGCCGGAGCACTGTG--ATTT-CTGTGGTGTATT--TGGCCTGAGTTTTGACTACATAT-----------------------------------------------------------------------------------------------------------------------------------
#=GS CryWin/1-188 DE AWGH01000001.1:633063-633250 Cryptococcus wingfieldii CBS 7118 supercont1.1, whole genome shotgun sequence
CryWin/1-188                  -------------------------------------------------------------------------------------------------------------------------------CTTCTTGAATCAAA-----TTGTATA-TGGTCCCG---TTATTGTGGATCCTGGGCGTAACTCCGTCTCCTTTGGGGTCGGTGTT--CAGTGTCCAGTGATCTCTACAGGAG-GATCTAGAGCGAAATT-----CA--TA-AGACAAGA----CGTCTAGCCGGGGCACTGTG--ATTT-CTGTGGTGTATT--TGGCCTGAGTTTTGACTACATAT-----------------------------------------------------------------------------------------------------------------------------------
#=GS KwoHev/1-196 DE ASQC01000015.1:212245-212440 Kwoniella heveanensis CBS 569 cont2.15, whole genome shotgun sequence
KwoHev/1-196                  --------------------------------------------------------------------------------------------------------------------------------CTTCAGAATCAAATT---TTGTACCGTGATCCCAA---TATTGTCACTATCCCAGCCCGTTTTCTTACGCAAGAAGAAAAATCATTCCTAGCCAGGACAGTGCTACCGGAG-GATCTAGAGCGAAATT-----CA--CA-AGTCAGGAT---TATCTAGCCGGAACATTTTGG-ATTCTCTGTGGTGTAA-ACCGGCCTGGGTCTTGCCTATATAT-----------------------------------------------------------------------------------------------------------------------------------
#=GS KwoMan/1-187 DE ASQF01000013.1:c644483-644297 Kwoniella mangroviensis CBS 8886 cont1.13, whole genome shotgun sequence
KwoMan/1-187                  -------------------------------------------------------------------------------------------------------------------------------CTCCTCGAATCAAA-----TTGTATTGTGATCCCG---TTATTGTAGCTCC----ATTGGTCTTA------TTCACATAAACA----CCTAACCAGTAAAGCTCTACAAGAG-GATCTAGACTTAGTCTATTGACG--TACGGACAAGGT---TGTCTAGCCGACGCATTTTTCTTTTGAATGTGGTGTATTGTTGGCCTGAATCTTGCCTATAT-------------------------------------------------------------------------------------------------------------------------------------
#=GS KwoBes/1-210 DE ASCK01000013.1:c73089-72880 Kwoniella bestiolae CBS 10118 cont1.13, whole genome shotgun sequence
KwoBes/1-210                  --------------------------------------------------------------------------------------------------------------------------TTCTTTCTTTAGAATCAAA-----TTGTATTACGATCCCG---TTATTGTGGCTCC----ATTGGTCTCAAACTACCT-----------------AACCAGTAAAGCTCTACAAGAG-GATCTAGACGGAGTCTATTGACA--TCAAGACAAGGT---TGTCTAGCCTGCGCATCGTT---TTTGAGGTGGTGTA--GTTGGCCTGAATCTTGCCTATATCTTTGTATCTATCTATGAAATTTTGTATGA-------------------------------------------------------------------------------------------------------
#=GS KwoSha/1-410 DE NQVO01000016.1:144626-145035 Kwoniella shandongensis strain CBS 12478 scaffold00016, whole genome shotgun sequence
KwoSha/1-410                  CAGGTGTGGCAGTGCCAATCTTATCCCTCCACACCAACGTGCAAGTCTCGACACCCCCCTCCCTCCCTACCAACGTCCACCCACCGCACCCAAATTTCAACTTTGCATTTCTTCGCACTCCTCTTTTTGTTCAG--TCAAA-----TTGTAT-GTGGTCCCGTATTTATTGTGATCGCGC-AGGTGGTATATT--------------------ATCGGCCCAGCGGGGTTCTACAGGAG-GATCTAGAACT-GC-TTCTCACAGCTATGGACAGGAT---TATGTAGCGAAGTCATCCTTT-ATTGTCGGTGGTGAA--CTTGGCCTGGGTCTTGCCTACATTTTGTACTCTGCAACTTTATGTTCTATGATGTATGGTATGCACAAAACAAAAACAGCAGCAGCAGGGGTAATCAGACATAATGGCAGCAACAGCTTACGAGTGGTC---------------------------
#=GS KwoDej/1-210 DE ASCJ01000007.1:16880-17089 Kwoniella dejecticola CBS 10117 cont1.7, whole genome shotgun sequence
KwoDej/1-210                  -------------------------------------------------------------------------------------------------------------------TCTCTCCTCTTTTCTATTGAATCAAA-----TTGTAT-GTGGTCCCG---TTATTGTAGCTAG----ACCGGTCTCATCTTCTTCTCAGTAAGA--ATGCCTAACCAGTAGAGCTCTGCCAGTG-GATCTAGAAT--GTTTCTTTTAA-CTC-AGACAAGGT---TGTCTAGCC-GCGCATTTTT---ACAAAGATGG-ATGGAAGCGGCCTGAATCTTGCCTATATATTTTACTATT--------------------------------------------------------------------------------------------------------------------------
#=GS CryFla/1-284 DE CAUG01000084.1:62740-63023 Cryptococcus flavescens NRRL Y-50378 WGS project CAUG00000000 data, contig NODE_117_length_72879_cov_45_286091, whole genome shotgun sequence
CryFla/1-284                  -------------------------------------------------------------------------------------------------------------------TCTCGTCTT--CTTCTTTGAATCAAA-----TTGTAT-ACGGTCGCG---TTATTGTAGCACCTTCGGACCCA-AAAGCTTTT-------------------ATCTGTTGATGCTCTACAAGTCGAACCAAGAATCGGTTTTCACGCC--TACGGACGGGAC---TGTC-AGCCAGCGCAGCAA------GAAAATGTTGTGA-TTCGGCCTGGGTCTGGCCCAAATTCTTCCTATCATAGCTTCTTGTATCCCTCCATGCATTGTTTTGTGTCTTGATCACTGCGCTTTGCGCTCCTCTCCATCTGTACAGGCACCGCCGTAGCTTC--------------------------------
#=GS PapTer/1-321 DE JAHXHD010000082.1:c7225-6905 Papiliotrema terrestris strain LS28 scaffold-81, whole genome shotgun sequence
PapTer/1-321                  ----------------------------------------------------------------------------------------------------------------------CGTCTTTCCTTCTTTGAATCAAA-----TTGTAT-ACGGTCGCG---TTATTGTAGCACCTTCGGACCCACAAAGCTTC-------------------AATCTGTTGATGCTCTACAAGTCGAACCAAGAATCGGTTTTATACCA---GCGGACAGGAC---TGTC-AGCCAGCGCAGCAATTCATAACAAATGATGTGT-TTCGGCCTGGGTCTTGCCCAAATTTATTCTATAGCTTTTGGTAGATCCTAGTCATGCAAGTTTGTTATTCCCTGATTCCTCTGCAGACCTTTGCAACTGTTCTGGACACGCCGGTCTATGGGCCATCGCTCGCGATTAGGATGACGTCTCATCCCC
//

• Image source 11.1:

# STOCKHOLM 1.0
#=GF RW van Nues, September 2023
#=GF https://coalispr.codeberg.page/paper
#=GS HACAcnag01951-in-CNK02900/1-166 DE intronic-HACAsnoRNA-169nt-in-CNK02900 ncrna 11:852866:853032:1 AE017351.1:852867-853032 Cryptococcus neoformans var. neoformans JEC21 chromosome 11 sequence
HACAcnag01951-in-CNK02900/1-166         ------------------CACCGAAGTATAACTGCCTCCACGCGC----TCTTCTCACCGAGGCGAGGCTTTAAGTCTTCGGAAGAGCAACA-----------CTTCTGTGTCA-CCACTTCTCGA-----TCAATTCAGACCTGCGA---CTCAAGGCCGCATGGCCGGGGTTCCAAGC-AGGGCTGGCTGGTC-----AGAGGAGGACACTC-------------------------------------------------------------------------------------------------------------------------------------
#=GS in-CNAG_01951/1-166 DE CP003830.1:1349682-1349847 Cryptococcus neoformans var. grubii H99 chromosome 11, complete sequence
in-CNAG_01951/1-166                     ------------------CACCGAAGTATAACTGCCTCCACACGC----TCTTCTCACCGAGGCGAGGCTTTAAGTCTTCGGAAGAGCAACA-----------CTTCTGTGTCA-CCGCTTCTCGA-----TCAATTCAGATCTGCGA---CTCAAGGCCGCATGGCCGGGGTGCCAAGC-AGAGCTGGCTGGTC-----AGAGGAGGACACTC-------------------------------------------------------------------------------------------------------------------------------------
#=GS R265/1-165 DE CP025759.1:c177746-177582 Cryptococcus gattii VGII R265 chromosome 1, complete sequence
R265/1-165                              ------------------CACCGAAGTATAACTGCCTCCACACGT----TCTTCTCACCGAGGCGAGGCTTTAAGTCTTCGGAAGAGTAACA-----------CTTTTGTGTGG-CCCTTTCACGA-----TCAATTCAGACCTGCGG---CTCAAGGCCGCATGGCCGGGGTGCCAAGC-AGAGCTGGCTGGTC-----AGAGGAGGACACT--------------------------------------------------------------------------------------------------------------------------------------
#=GS WM276/1-165 DE CP000296.1:c182836-182672 Cryptococcus gattii WM276 chromosome K, complete sequence
WM276/1-165                             ------------------CACCGAAGTATAACTGCCTCCACACGT----TCTTCTCACCGAGGCGAGGCTTTAAGTCTTCGGAAGAGCAACA-----------CTTTTGTGTGG-CCTCTTCACGA-----TCAATTCAGACCTGCGG---CTCAAGGCCGCATGGCCGGAGTGCCAAGC-AGAGCTGGCTGATC-----AGAGGAGGATACT--------------------------------------------------------------------------------------------------------------------------------------
#=GS CryAmy/1-162 DE MEKH01000014.1:c176734-176573 Cryptococcus amylolentus CBS 6273 supercont2.14, whole genome shotgun sequence
CryAmy/1-162                            -----------------CACCCGGAGAATAACTGCAACTCTTCGCT---CTTCCACACCGAGGAGAGGCTTTAAGTCTCCGGAAAACCAAAA---------------TACACT-------CTCCAA-----CTAATCCAGCTCTTCTCG--CTCAAGGCCGCATGGCCGGGGTGTCCCGG-AGGGCTGGCTGATT-----GGGGGAGCACATTCCCA----------------------------------------------------------------------------------------------------------------------------------
#=GS CryFlo/1-165 DE RRZH01000010.1:c209149-208985 Cryptococcus floricola strain DSM 27421 chromosome 9, whole genome shotgun sequence
CryFlo/1-165                            ---------------TCCACCCGGAGAATAACTGCAACTCTTCGCT---CTTCCACACCGAGGAGATGCTTTAAGTCTCCGGAAAACCAAAA---------------TACGCT-------CCCCAA-----CTAATCCAGCTCTTCTCG--CTCAAGGCCGCATGGCCGGGGTGTCCCGG-AGGGCTGGCTGATT-----GGGGGAGCACATTCCAGA---------------------------------------------------------------------------------------------------------------------------------
#=GS CryVH5/1-263 DE JANBXI010000007.1:c63799-63537 Cryptococcus sp. VH57_BW 7, whole genome shotgun sequence
CryVH5/1-263                            ---------------TCTACCCGGAGTATAACTGCCTCCACACGCA---CAATCCTACCGAGGCGAGGCTTTAAGTCTCCGGAAGAATACA-------------CCTAGTGAA----CCTCCTCAA-----CTAATCCGGTCCTGCACG--TTCGAGGCCGCATGGCCAGCTCGCCAAGC-AGGATTGGCTGATT-----GGGGGAGGACATCCTATCATAACCCACACACCCTCATCCTTCCCACTTCTTCTCCTCTATCCCGAATCTCGCGCACTCTGAGAAGGGCTTCCACTAACGCGATACTCTCTC------------------------------------
#=GS KwoSha/1-187 DE NQVO01000003.1:684150-684336 Kwoniella shandongensis strain CBS 12478 scaffold00003, whole genome shotgun sequence
KwoSha/1-187                            ---------------ACTACCCGGAGTATAACTGCCTCCACACGT----TCTTCTCACCGAGGCGAGGCTTTAAGTCTCCGGAACATTGA--TTTCTGATCACTATATGTGATCTATCTCTTTCGTTT----CAACGCGAGTCTGTACAG-CTCGAGGCCGCATGGCCAGGGTGTCAGAC-AGATTCGATTGATT---CGAAAGAGGGACATTCTAC----------------------------------------------------------------------------------------------------------------------------------
#=GS KwoHev/1-203 DE ASQC01000124.1:19534-19749 Kwoniella heveanensis CBS 569 cont2.124, whole genome shotgun sequence
KwoHev/1-203                            ----------------CAACCCGGAGTATAACTGCCTCCACACGC----TCTTTCCACCGAGGCGAGGCTTTAAGTCTCCGGAAGACAAAAGACGACCCAGTCATCTCTATCTGATTGTGGTCCCTCTTCTCACTTTTCCGCCTCTGCTCGTTCGAGGCCGCATGGCCAGTTCATCATGC-AGAGTCGGCTGATT-----GGCTGAGGACATCCCATTCATACAAACTC----------------------------------------------------------------------------------------------------------------------
#=GS KwoMan/1-184 DE ASQE01000006.1:714800-715075 Kwoniella mangroviensis CBS 8507 cont2.6, whole genome shotgun sequence
KwoMan/1-184                            ----------------ATACCCGGAGTATAACTGCCTTTACACGT----TATTCCTACCGAGGCGAGGCTTTAAGTCTTCGGAAGAGCGA---TTCTT---CCTCCCTTTTTCGTACTTCTTTTGA-----TCAAGT-CAGA---------TTCGAGGCCGCATGACCAGTTTCATAGAC-TTGATCAACCCATT---GAAAAAGGGGACATCATTCTCATATCAACGC----------------------------------------------------------------------------------------------------------------------
#=GS KwoBes/1-285 DE ASCK01000007.1:539383-539723 Kwoniella bestiolae CBS 10118 cont1.7, whole genome shotgun sequence
KwoBes/1-285                            TTAAATCATTCATATTACACCCGGAGTATAACTGCCTTTACACGT----TACTCCTACCGAGGCGAGGCTTTAAGTCTCCGGAATATCCA-------------TCTATTTCCCTTCTTTCTTTCA------TCTTGATGATATGCGA----TTCGAGGCCGCATGGCCAGTTTTGATAAA-TATCACCTACCATCACGAGAGAAGGGAACATCCCATTACATCTGCATCCGGTGCATTATGTTGA-----------TACAGTTGAATGAATA---------------TAGGTTACATTGGTGAATTCGAGATCATCGATGACCACCGAGGTGGAAAGGT--------
#=GS KwoDej/1-272 DE ASCJ01000002.1:c404272-404001 Kwoniella dejecticola CBS 10117 cont1.2, whole genome shotgun sequence
KwoDej/1-272                            -------------GTTCGACCCGGAGTATAACTGCCTCCACACGC----TCTTCCCACCGAGGCGAGGCTTTAAGTCTCCGGAATATCAAA-----------CTCCTCTTCCTCATATACTTCTGA------CAAGTGCAGAA--------CTCGAGGCCGCATGGCCAGGGTTGAAAAG-CATTTGTCATTATTAT-GAAGAAGTTCACATCTTTCCCTTTTCCAGTTGGAAACATGAAGTCGAAGACTGAACGGAACGAGAAGCTGATATGTAAAACGCTCTC--TAGGTTACATTGGTGAATTCGAGATCATCGA-----------------------------
#=GS CryGC7/1-249 DE JALPBX010000019.1:20117-20365 Cryptococcus sp. GC_Crypt_7 iso00_79_19, whole genome shotgun sequence
CryGC7/1-249                            ---------------TCCACCCGGAGTATAACTGCCTCCACACGTC---TTATACCACCGAGGCGAGGCTTTAAGTCTCCGGCAGAGTCGA---------------TCATATTCCTACTCCTCTTTCA---TATATCCGGCTGTGCTCG--CTCGAGGCCGCATGGCCAGGGTGTCAAGC-ACACTCGGCTGATT------GGGGAGAACATCTATCTCAAGTCTTCGATTGTCTTGTTTGT--------------TTGTCATGACTGACAAATCTACTTTCTATCGCAGGCTACATCGGCGAGTTCG---------------------------------------
#=GS CryGC3/1-272 DE JALPCB010000146.1:c41689-41418 Cryptococcus sp. GC_Crypt_3 iso00_45_146, whole genome shotgun sequence
CryGC3/1-272                            ------------CATCGCACCCGGAGTATAACTGCCTCCACACGTCT--TATACCCACCGAGGCGAGGCTTTAAGTCTCCGGCAGAATCGA---------------TCATATTCCTACTCCCTCATA----TCCATTCGACTGCGCTAG--CTCGAGGCCGCATGGCCAGGGCGTCAAGC-GCAGAAGGCTGATT-----GGGGGAGAACATCTATCACGAACCCTGAGATCATCTTTTTGT--------------ATGCCGTGACTGACAAC-TCC-GTTTGATCGCAGGCTACATCGGCGAGTTCGAGATCGTCGACGACCACCGTG------------------
#=GS CryGC5/1-269 DE JALPBZ010000039.1:c64499-64231 Cryptococcus sp. GC_Crypt_5 iso00_58_39, whole genome shotgun sequence
CryGC5/1-269                            ---------------CTTACCCGGAGTATAACTGCCTCCACACGTCT--TATACCCACCGAGGCGAGGCTTTAAGTCTCCGGCAGAATCGA---------------TCATATTCCTACTCCCCCGTA----TCCATTCGACTGCGCGAG--CTCGAGGCCGCACGGCCAGGGCGTCAAGC-GCAGGAGGCTGATT-----GGGGGAGAACATCTATCTCGAATTCTAGAAATACCTTCTTGT--------------CTTCTGTGACTGACGCTATAATGTTTGATCGCAGGCTACATCGGCGAGTTCGAGATCGTCGACGACCACCG--------------------
#=GS CryGC2/1-264 DE JALPCC010000015.1:c92654-92325 Cryptococcus sp. GC_Crypt_2 iso00_70_15, whole genome shotgun sequence
CryGC2/1-264                            -------------CCACCACCCGGAGAATAACTGCCTCTACTCGA----GATTCTCACCGAGCGTGGGCTTTAAGTCTCCGGCAGAACATAA------------------CCACACACTCCTCGA------CTAATCCCCATTCGACAG--CTCAAGGCCGCATGGCCGGGGTATCGTGT-CGTTGGGGCTGATT-----GGAGGAGGACATCATTATCACACATTGTAACAACTT--------------------GATCAGTAACTGATTTA--------------TAGGCTACATTGGTGAATTCGAGATCATCGATGACCACCGAGGAGGCAAAGTTGTCATTC
#=GS KocImp/1-191 DE NBSH01000014.1:c571900-571710 Kockovaella imperatae strain NRRL Y-17943 BD324scaffold_14, whole genome shotgun sequence
KocImp/1-191                            -----------------CCTCCGGAGTATAACTGCCACCTCTCGCACTCTTACCCCACCGAGTGGAGGCTTTAAGTCTCCGGAAGAGTGAATCAAGGA-----TCTCATTCATGGGATTGCCCTCCTCATACTAATCCCTCTTGACGAG---TCAAGGCCGCACGGCCGGGCATACAGTC--TTGGGGGCTGATT-----GGGGGAGGACAGCAGTTCTCTAT----------------------------------------------------------------------------------------------------------------------------
#=GS TreFuc/30-197 DE BRDD01000115.1:c37261-37065 Tremella fuciformis NBRC 9317 DNA, KCNB80TF.115, whole genome shotgun sequence
TreFuc/30-197                           ---------------CCTACCCGGAGTATAACTGCCTCCTCGAGC----TCTTCCCACCCCGCGGAGGCTTTAAGTCTCCGGCAGAGAGA-----------------TCCTCATCGAGG-------------CAATCCGACTCCTCATA---CTAATCCCGCCTGGCTAGAACACGCCCC----GCGGGCTGATT-----GGGGGAGGACACCTCACCGTCTCTGTCAC----------------------------------------------------------------------------------------------------------------------
#=GS TreYok/1-168 DE BRDC01000024.1:c135835-135668 Tremella yokohamensis NBRC 100148 DNA, KCNB35TY.24, whole genome shotgun sequence
TreYok/1-168                            ---------------CCTACCCGGAGTATAACTGCCTCCTCGAGC----TCTTCCCACCCCGCGGAGGCTTTAAGTCCCCGGCAGAGAGA-----------------TCCTCATTGAGG-------------CAATCCGACTCCTCATA---CTAATCCCGCCTGGCTTGAACCCGCCCC----GCGGGCTGATT-----GGGGGAGGACACTTGGTCGCAAGCGTAGT----------------------------------------------------------------------------------------------------------------------
#=GS TreMes/1-167 DE SDIL01000133.1:27490-27656 Tremella mesenterica strain ATCC 28783 supercont1.133, whole genome shotgun sequence
TreMes/1-167                            ----------------CCATCCGGAGAATAACTGCCTCCACGCGT----ACATTCCACCTCGTGGAGGCTTTAAGTCTCCGGAAGAGAGA-----------------------CAATATCTCCTCATA---CTAATCCCATCTGGCGG--TCTTGAGGCCTTTTGGCCGGAGA-CGATGC-TTGGTGGGCTGATT-----GGGGGAGGACATCTCATACTGT-----------------------------------------------------------------------------------------------------------------------------
#=GS PapLau/1-168 DE JAAZPX010000027.1:c120278-120111 Papiliotrema laurentii strain IF7SW-F4 scaffold46_cov194, whole genome shotgun sequence
PapLau/1-168                            --------------ACCACCCCGGAGTATAACTGCCAACCCTCGC----TATTACCACCAAGGGAAGGCTTTAAGTCTCCGGAAGATTAC-------------------TCTACACGCTCTTCATA-----CTAATCCCTCTTGACCTAG--TCAAGGCCGCACGGCCGGACGCTGGAAGTCTTGGGGGCTGATT-----GGGAGAGCACATGCCGC----------------------------------------------------------------------------------------------------------------------------------
#=GS PapTer/1-205 DE JAHXHD010000300.1:c36307-36103 Papiliotrema terrestris strain LS28 scaffold-299, whole genome shotgun sequence
PapTer/1-205                            ----------AACCTTCGCCCCGGAGTATAACTGCCAACCCTCGC-GCCAATTCCCACCGAGAGACGGCTTTAAGTCTCCGGAAGAATA-------------------CTCTCAATGCTCTTCATA-----CTAATCCCTCTCGGTTGTCA-CCAAGGCCGCATGGCCGGGTGCAGGACGCCGAGGGGGCTGATT-----GGGAGAGCACATCATGGGTCCCTTTCTTTGGGTCCTTTCGTCGTCT-----------------------------------------------------------------------------------------------------
#=GS CryFla/1-191 DE CAUG01000622.1:313640-313830 Cryptococcus flavescens NRRL Y-50378 WGS project CAUG00000000 data, contig NODE_1791_length_325247_cov_46_176311, whole genome shotgun sequence
CryFla/1-191                            --------------CTCATCCCGGAGTATAACTGCCAACCCTCGC-GCCAATCCACACCGAGAGACGGCTTTAAGTCTCCGGAAGAATG-------------------CTTTACACGCTCTTCTTA-----ACAATCCCTCTTGGTTGTCA-CCAAGGCCGCACGGCCGGGTGCAAGACGCCAAGGGGGCTGATT-----GGGAGAGCACATCCTTCATCTTGTTATTTGGATCCT---------------------------------------------------------------------------------------------------------------
#=GS TriGue/1-177 DE BCJX01000012.1:c281038-280862 Trichosporon guehoae DNA, scaffold: scaffold_11, strain: JCM 10690, whole genome shotgun sequence
TriGue/1-177                            -------------CACAACCCCGGAGTATAACTGCCCCTCCTCGC----ACTGTCCACCGAGGAAGGGCTTTAAATCTCCGGGAGAACGA-----------------------CACTCTTCATAA-------CAATCCGTCTCGTCGCA--CTCAAGGCCGCACGGCCGGGGTCCTAGA--CGAGGGGGCTGATT-----GGGAGAGAACAAGCACGCATTTGCAGCGGGCAA------------------------------------------------------------------------------------------------------------------
#=GS CrySki/1-188 DE BCHT01000015.1:50617-50804 Cryptococcus skinneri DNA, scaffold: scaffold_14, strain: JCM 9039, whole genome shotgun sequence
CrySki/1-188                            --------------CCACACCCGGAGTATAACTGCCAAAACTCTC-CGTCGTCTCCACCGAGTTCAGGCTTTAAGTCTCCGGCAGACCAA-------------TACCCAATCGAGGGCGACTCCCCAA---CTAATCCTGATAACCTTG--CTCGAGGCCGCATGGCCAGTGCCGAAGTT--TGTTGGGCTGATT-----GGGGGAGCACATGACGTTGATATCTGAG-----------------------------------------------------------------------------------------------------------------------
#=GS BulAlb/1-180 DE CAMYTR010000161.1:16820-16999 Bullera alba genome assembly, contig: jcf7180000012262, whole genome shotgun sequence
BulAlb/1-180                            -------------CACCCACCCGGAGAATAACTGCCACCTCTCGT--TCGTGCTCCACCGATAGGAGGCTTTAAGTCTCCGGCAAA------------------------------TCGAATCCATC----CTAG-CCTTAACACGCCGGGTTGGAGGTT-CAC-GCTCCTCATACTAATCCCTCTTGGCTACCGTC-----AAGGCCACATCGGCCGGGCGGAACCAGTCTCGGGG--------------------------------------------------------------------------------------------------------------
//

• Image source 13.1:

# STOCKHOLM 1.00
#=GF RW van Nues, September 2023
#=GF https://coalispr.codeberg.page/paper
Annot/1-13                     -------------------------------------------------------------------------------------------------------------------------------------------------GTGrGT--------------------------------------------------------------------------------------------------------------------------CTGA--------------------YAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS HACAup-cnag06094/1-199 DE ncrna 13:305901:306101:-1 AE017353.1:c306100-305902 Cryptococcus neoformans var. neoformans JEC21 chromosome 13 sequence
HACAup-cnag06094/1-199         -------------------------------------------------------------------------------------------------------------------------------AACAAACGCAAATT----------------------------------------------------------------------------------------------------------------------------------------------------------------AAATCTACA-AAAAAGCACC----TCCTCTCCCCCTGCGGATCCCTAGG--------TTTTAGGACAA--AGGTCGTATCCC-------TAATT----GTGGAGAA-GGAGGCCGTCAT-ATCGTAGAAGAGAACGA--------------------------------------AATAAAAAACAGGACTTGGGTGGACCGCTCGCT---------------------------TGAAATACAGTGGCG---GGGGGTCCAAATCTTTGTTTTACATTCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS up-cnag06094_H99/1-199 DE CP003831.1:c293320-293122 Cryptococcus neoformans var. grubii H99 chromosome 12, complete sequence
up-cnag06094_H99/1-199         -------------------------------------------------------------------------------------------------------------------------------AACAAACGCAAAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------AAATCTACA-AAAAAGCACC----TCCTCTCCCCCTGCGGATCCCTAGG--------TTTTAGGACAG--AGGTCGTATCCC-------TAATT----GTGGAGAA-GGAGGCCGTCAT-ATCGTAGAAGAGAACGA--------------------------------------AATAAAAAACAGGACTTGGGTGGACCGCTCGCT---------------------------TGAAATACAGTGGCG---GGGGGTCCAAATCTTTGTTTTACATTCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS WM276/1-199 DE CP000298.1:c242256-242058 Cryptococcus gattii WM276 chromosome M, complete sequence
WM276/1-199                    -------------------------------------------------------------------------------------------------------------------------------AACAAACGCAAAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------AATTCTACA-AAAAAGCACC----TCCTCTCCCCCTGCGGATCCCTAGG--------TTCTAGGACAG--AGGTCGTATCCC-------TAATC----GTGGAGAA-GGAGGCCGTCAT-ATCGTAGAAGAGAACGA--------------------------------------AATAAAAAACAGGACTTGGGTGGACCGTTCGCT---------------------------TGAAATATAGTGGCG---GGGGGTCCAAATCTTTGTTTTACATTCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS R265/1-199 DE CP025770.1:455332-455530 Cryptococcus gattii VGII R265 chromosome 12, complete sequence
R265/1-199                     -------------------------------------------------------------------------------------------------------------------------------AACAAACGCAAAATC----------------------------------------------------------------------------------------------------------------------------------------------------------------ATTCTACA-AAAAAGCACC----TCCTCTCCCCCTGCGGATCCCTAAG--------TTCTAGGACAG--AGGTCGTATCCC-------TAATC----GTGGAGAA-GGAGGCCGTCAT-ATCGTAGAAGAGAACGA--------------------------------------AATAAAAAACAGGACTTGGGTGGACCGTTCGCT---------------------------TGAAATATAGTGGCG---GGGGGTCCAAATCTTTGTTTTACATTCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS CryWin/1-190 DE CP034267.1:1255389-1255578 Cryptococcus wingfieldii strain CBS7118 chromosome 7, complete sequence
CryWin/1-190                   -------------------------------------------------------------------------------------------------------------------------------AACAAACGCAAAAAC---------------------------------------------------------------------------------------------------------------------------------------------------------------AAATCTACAAAAAAAGCACC----TCCTCTCCTCCTGTGGATCCCC---------------TTTCGAG---GGCCGCATCCC-------TACTA----GTGGAGAA-CGAGGCCGTCAT-ATCGTAGAAGAGAGCGA--------------------------------------AATCAAAA--GGGATTTGGGTGGACCGCTTGAC---------------------------TGTAA-AAGGTGATG---AGGGGTTCAAATCCGTGTTTGACATTCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS CryFlo/1-190 DE RRZH01000008.1:100454-100643 Cryptococcus floricola strain DSM 27421 chromosome 7 DSM27421_contig_08, whole genome shotgun sequence
CryFlo/1-190                   -------------------------------------------------------------------------------------------------------------------------------AACAAACGCAAAAAC---------------------------------------------------------------------------------------------------------------------------------------------------------------AAATCTACAAAAAAAGCACC----TCCTCTCCTCCTGTGGATCCCC---------------TTTCGAG---GGCCGCATCCC-------TACTA----GTGGAGAA-CGAGGCCGTCAT-ATCGTAGAAGAGAGCGA--------------------------------------AATCAAAA--GGGATTTGGGTGGACCGCTTGAC---------------------------TGTAA-AAGGTGATG---AGGGGTTCAAATCCGTGTTTGACATTCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS CryAmy/1-190 DE MEKH01000007.1:1193758-1193947 Cryptococcus amylolentus CBS 6273 supercont2.7, whole genome shotgun sequence
CryAmy/1-190                   -------------------------------------------------------------------------------------------------------------------------------AACAAACGCAAAAAC---------------------------------------------------------------------------------------------------------------------------------------------------------------AAATCTACAAAAAAAGCACC----TCCTCTCCTCCTGTGGATCCCC---------------TTCCGAG---GGCCGTATCCC-------TACTA----GTGGAGAA-CGAGGCCGTCAT-ATCGTAGAAGAGAGCGA--------------------------------------AATCAAAA--GGGATTTGGGTGGACCGCTTGAC---------------------------TGTAA-AAGGTGATG---AGGGGTTCAAATCCGTGTTTGACATTCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS CryGC3/1-478 DE JALPCB010000248.1:c17544-17067 Cryptococcus sp. GC_Crypt_3 iso00_45_248, whole genome shotgun sequence
CryGC3/1-478                   -----------------------------------------------------------------------------------------------------------------------TTCTTCTTCTTTAACGCAATTTA---GTGAGTCTTCCCGCCTATAACAGCCAGTCATGGATGCATGGCCTGCGCTTCACGGAAACTTCCGAGGGCACTTCAGAC--------------------------------------------AGAACGCTGACTA-------CCACTTGTTCTAG--ATTCTACAC-AAAAGCACCGG--TCCTCGCTCCT-GCGGATCCTCAGAGCCGTCAAACGCCCTCGAGTT-GATCCCT-CCT-------TTTATCA--ATGGAGGA-ACCGGCCGTCATTATCGTAGAAGAGAACGA-------------------------------TCTACT--ATCAGAC--AAGAATTGGGTGGATCGCCCTTTTTGTTTCGCTTCCCAAAAAAAAGAGGATGTGGGATTGTGAGG---GGGGATCCAAATCTA-GTTTGACATTTTATCTATACGCGGCCGTGAGCTGTGATTCGTCGCCCATCATGCATTGTGCTTCGTCCTCTCACCGTTTCGTATCTAGTGGACTTTTCTATCCCTCTTTTGCTTGTGGGGCAGCTCACGTCATATGAC-----------------------------------------------------------------------
#=GS CryGC7/1-466 DE JALPBX010000081.1:81790-82255 Cryptococcus sp. GC_Crypt_7 iso00_79_81, whole genome shotgun sequence
CryGC7/1-466                   ---------------------------------------------------------------------------------------------------------------------------TCTTCTTTAACGCAATTTA---GTGAGTCTTTTCCCGTATACCAGCCGGTCACAGATGCATGGCATAATCTCTGCAGAAAATCCCCTAGAC----------------------------------------------------CAGCACGCTGACA---------ACGATCCTCTAG--ATTCTACAC-AAAAGCACCGG--TCCTCGCACTCAGCGGATCCTCAGAGTCGTAAAACACTTTCGAGTC-GATCCCTACCT-------TTATTTG--ATGGAGGT-ACCGGCCGTCATATCAGTAGAAGAGAACGA-------------------------------TCTATT--ATCATAC--AAGAATTGGGTGGATCGCCCTTTTTGTCTCGCTTCCCAAAAAGAGGAAGA---GGGATTGTGAAG---GGGGATCCAAATCTA-GTTTGACATCTTATCGAGTATGAGCTGTAAGCTGTACGCTTCCATTTATGAGACTTTACCATGCATAACCTTGACTCGCACAATGGATGTCATCTCTATGACACGACTGAAGATTGCATACCAGGTATATACCGCCTCTCC--------------------------------------------------------------------
#=GS KwoHev/1-439 DE ASQC01000060.1:132504-132780 Kwoniella heveanensis CBS 569 cont2.60, whole genome shotgun sequence
KwoHev/1-439                   ----------------------------------------------------------------------------------------------------CTCGCCAACTTCTGTTCCTCTTTCTTCAACAAACGCTAAAA----GTGAGTAACAAGCAGCACCTTTGCATATCCTCACCCTGCTATATCCTCATGCCCAAGGGATCATGCACGATCTATACCTCGCGATCA---------------TGGATCATGTCTAAACGATGCATGTGCTGATGCTGTG-----TCCTCCTCCAG--ATTCTACAC-AAAAGCACCGG--CTCTCCCCCTCTGCGGATCCCCAATCTCGA-------TT----G---GGTCG-ATCCC-------TAACTAA--GTGGAGAA-ACCGGCCGTCAT-TCAGTAGAAGAGAATGATTCTGCCTGGTTGATTTCATCTGAAGTCAGCAAGTCGGAATCAAAC--GGGAATTGGGTGGACCGCTTTCTTTGATCTTACCTACTTACACAAAAGAGGAGGATTCGGTGGAT---AGGGGTCCAAG-ACTTGTTTGACACTTCTTTTCTCGTAGGTGTATC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS KwoBes/1-606 DE ASCK01000011.1:159332-159937 Kwoniella bestiolae CBS 10118 cont1.11, whole genome shotgun sequence
KwoBes/1-606                   --------------------------------------------------------------------------------------------------------------------TTCTTCTTCTCAACAAACGCTTAATAA--GTGAGTAACACTCTACCATCTGCACCTCCAACATGACACCCCAGCCACAGTCCCAATCCTAGACTCGATGCTATCATGCACTCACTTCTCCTCCTCATCATCATGTTCACTCTACGAACGGTAACATACTGACCTTCCCCCCTCTCCTCCCACAG--AATCTACAC-AAAAGCACCGACCTTCCCCATACAATATCACCTCGTGGATCCCTATCCCTCAAAAAGTTAGGTCGTATCCCGATGATATAACATTATAATGGAAACGTCGGCCGTCATTCTCGTAGAAGAGATGGAT---------------CTGT----------------AAAATCAAAC--GCGAATTGGGTGGACCGTTCTCT---------TGGTATTTCAA------TGGAATACAAGTGGA---GAAGGGTCCAAATCT-TGTTTGACATCTTTTAGATTATAGTATTAGTATAATACATGTTTTAGCAAAGGTATGCATCATCGTCATTGTCGGCGGACGCTCTTGCTCTCTTGAATTTGTTTTAATTTGATATATACACATTACGGATAGTAATTAGGTGTGTACATATTGCCTTGGCTCTCACGTCTTGAGTTAGAATACATCGTGAACCAGCTTCCAATCATCCCA
#=GS KwoSha/1-213 DE NQVO01000048.1:32544-32756 Kwoniella shandongensis strain CBS 12478 scaffold00048, whole genome shotgun sequence
KwoSha/1-213                   --------------------------------------------------------------------------------------------------------------GTTCTCTTTCTTCAAAATTTAAACGCAAAACC---------------------------------------------------------------------------------------------------------------------------------------------------------------ACTTCTACAC-AAAAGCACCTTTCCTTCCCCCCCTCGTGGATCCTC-------------TCTTCGGAG---AGTCGTATCCC-------ATTCGAT--GGAGTGAA---AGGCCGTCATTTCAGTAGAACAGAACAACG---------------------------------------CAAAC--GGGAATTGGGTGGACCGCTCTCT-------------------------TGTGTAA-AAGGTAGGG---AGGGGTCCAA-TACTTGTTTGACATTTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS CryVH5/1-288 DE JANBXI010000042.1:c112258-111871 Cryptococcus sp. VH57_BW 42, whole genome shotgun sequence
CryVH5/1-288                   -----------------------------------------------------------------------------------------------------TCCATCTCCCTCTCTCTTTTCTTTCTCCTTAACGCAAAAAC---------------------------------------------------------------------------------------------------------------------------------------------------------------AAATCTACAC-AAAAGCACC---TCCTCTCCCCCCTGCGGATCCTCACCCCTAA-------CCGGGAG---AGTCGTATCCC-------ACCCCC---GTGGAGTATGGAGGCCGTCATTATCGTAGAAGAGAGCGA-------------CTTTC------------------------AAAC--GGGAATTGGGTGGACCGCTTTCT----------------------TGTGACTAAACAAGTGGGTAGATTGGGGTCCAA-TACTTGTTGAACATCTGCATACCTGCCATAATGGGTTTCATGGGATGGATGCATAGCTTGCGATGGTCT-------------------------------------------------------------------------------------------------------------------------------------------------
#=GS ApiBra/1-199 DE JAMALJ010000037.1:133670-133868 Apiotrichum brassicae strain M2204 ctg_37, whole genome shotgun sequence
ApiBra/1-199                   ------------------------------------------------------------------------------------------------------------------------TATCTCCAACAAACGCATTTTC----------------------------------------------------------------------------------------------------------------------------------------------------------------ATTCTACA-AAAAAGCACCTGCGGGCCGCCGTTCCTCCCATCTC---------------------GGT--GGTCGAGGGAC----------------ACACGGCCCACAGGCCGTCAT-ATCGTAGAAGAGAGGA---------------------------------------ACAAAAACC-TGG-TTTGGGTGGACCGCCTACT-------------------TGCTCAAAAAAGAGCTGTGGTG----GGGGGTCCAAG-CCGCGTTTTACATTTTTAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS NaeEnc/1-451 DE MCFC01000026.1:c192932-192482 Naematelia encephala strain 68-887.2 BCR39scaffold_26, whole genome shotgun sequence
NaeEnc/1-451                   -------------------------------GTATCACAGACGAGAAATTCAAAATGCCACGTGATGTTTCTTCTCTGAGGATCCCTGCCCAAAATCTTTCGTTTTCTCGTTTGTCTTTCTCTTTTAACAAAACGCAAATC----------------------------------------------------------------------------------------------------------------------------------------------------------------AATTCTACTT-AAAAGCACTTGCACA-ATCCTATTCCTCCTCACC------TCTTAAAACCAGGT----CGAGTCGAGCGAC-------AAATCTC--CGTGGTCGTGCAAGCCGTCATATCTGTAGAAAAGAACGATA--------------------------------------ACAAACC--GGTTTTGGGTGGACCGTCGACC---GAATCTCATAAATATAAATTTTTGAGGTTCAAATGGT----AGGGGGTCCAAGA-CTTGTTTGACATTTACTCTGTATGCATTTTTGTTTTCTTCATTGGTGTGTGGTTTGTTGTGATGGTGTTGCAGATGCAGGTGTCACTGATATGCCTCGATGGGTTTGGAAAGGGAAAATCACAAGTGGTGTACGATATGGAAGC--------------------------------------------------------------------
#=GS NaeAur/1-451 DE JAKFAO010000008.1:c840106-839656 Naematelia aurantialba strain NX-20 Contig8, whole genome shotgun sequence
NaeAur/1-451                   -------------------------------GTATCGAACGAGCCGGTGATTTATTGCCACGTATGA---GCGGCGACGAGGCTGCAGCCAAAAATCTTCC---------TCTGGTTACCTCTTGTTCTTCAACGCAATCAAATC------------------------------------------------------------------------------------------------------------------------------------------------------------AATTCTACTC-AAAAGCACTTGCACA-TCCCTCTTCCTCCTCGCCCCTCCCCTCGCAGAGGAGGACCG-CGAGTCGAGCGAC-------AA-CTCC--CGTGGTCGTGCAAGCCGTCATATCTGTAGAAGAGAACGATC--------------------------------------ACAAACC--GGTTTTGGGTGGACCGTCGACC---GAGACTCGG---------ATACC-GGGTCTCCGTGGT----AGGGGGTCCAAGA-CTTGTTTGACATCTCTTTAGCTCTGTATGCATTTCTCTTCTGTCTCGCTGGTCAAGTGTGACTGTGGACTCCTGTTTCTGCGCCTTCTCGAGGAATGTAATGCGTCCCCCTCTGACCATCCTTCCTTGCTCCGCTCCTAGATAGAGATAGAAAG----------------------------------------------------------
#=GS TriOvo/1-193 DE JXYN01000004.1:1290508-1290720 Trichosporon ovoides strain JCM 9940 scaffold_0004, whole genome shotgun sequence
TriOvo/1-193                   -------------------------------------------------------------------------------------------------------------------------------CTTTAACGCAAATT----------------------------------------------------------------------------------------------------------------------------------------------------------------AAATCTACTC-AAAAGCACTTACGCAG------CCCAGGTCTCCTC----------------CTTTCG--GAGTCG-ATG-A-------CAACAC---GGCGCGA---TAAGCCGTCAT-ACTGTAGATGAGAACCA-----------AGAGTTCAC--GAACTCG-----------CAGAAC---GGCCTTGGGTGGGTTGTTGGCC---------------------------TGA---TCGGTGGCC---AGGGACCCAAAGCCG-GTTTGACATTCG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS TriInk/1-238 DE QAYW01012979.1:c437-200 Trichosporon inkin strain C-2155 NODE_12999_length_499_cov_2.23697_ID_255257, whole genome shotgun sequence
TriInk/1-238                   ----------------------------------------------------------------------------------------------------TTTCTTCTTTAACGCAAATTAAATCTACTCAAAAGCACTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGCAG--------------CCCAGGCCTCCTC----------------CGTTAG--GAGTCGACGG---------CATCAC---GGCGCGA---TAAGCCGTCAT-ACTGTAGATGAGAACCA-----------AGAGTTCAC--GAACTCG-----------CAGAAC---GGCCTTGGGTGGGTTGTTGGCC---------------------------TGA---TCGGTGGCC---AGTGACCCAAAGCCG-GTTTGACATTCGACATCGATGTATCATTCTTCTTCAGCAATCGGAGCCAAT--------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS CutDas/1-486 DE BEDX01000007.1:516120-516605 Cutaneotrichosporon daszewskae DNA, scaffold: scaffold_7, strain: JCM_11166, whole genome shotgun sequence
CutDas/1-486                   GCAGGGGGTGGAGTCGGCGCGGAAGCAAATCGTTTGGCGCGCTAACTCCGAGTTTCCGCTTGTGGCACCGTCACCCCTCGCACCCGCCGGTGCATATTTCAGCGCGCGCGCGGATTCCTGTCTCCTTAACAAACGCATTTT----------------------------------------------------------------------------------------------------------------------------------------------------------------AATTCTACTC-AAAAGCACC---------------------------TGCTCGCTCCGCCTCCCATCT---GGTCGAGGG------------TAC---GGCGCGC----AGGCCGTCAT-AACGTAGAAGAGACCGAT------------GGTTACC--G------------------CAGAC--GTGGTTTGGGTGGACCGTCTGCC------------------------------TGTTCAGTGGC---GGGGGGTCCAA-GCCTTGTCTGATATTCAGTTTGAGAGGGCATGTTTCGTGATGAATCTGTTGGTGTACTAGTGTACGGGAGGAGGAGAGGAGGACTGGTGCATCGTTGGCTGAGTGATAGAGATGTTGAGGCGACTGATTTTGGCGTGCTGCGTTGTGAGCTTCGACGTGCTGGAGAGCGACTGGCTTGCGCTGCGTTCAGGCGCTGCACA--------------
//