snR41-SNORD7

../../_images/snR41-SNORD7_h99_igb.png

  • snR41-SNORD7_intronic-boxCDsnoRNA-90nt-in-CNG03660

  • Within intron of CNG03660 (CNAG_03203) for DNA polymerase epsilon p12 subunit

  • Two predicted targets for the D’ guide in 18S rRNA: ggAacaactgga and tggAgtgatt

  • Orthologue of yeast snR41 (D'-guide)

  • Predicted target D-guide in U6 snRNA: (acaata)[c]agagAagatta

  • Orthologue of human SNORD7

  • Accessory guide tattgt can extend base-pairing with U6 snRNA target (within parentheses)

../../_images/snR41-SNORD7-align.png

>AE017347.1:c1027023-1026934 Cryptococcus neoformans var. neoformans JEC21 chromosome 7 sequence
CATTAGGATGAAAAAACATCATTCCAGTTGTTCCGACTGAGCCGGCACCTATTGTCACGTCGGCCAAGAT
TTGTAATCTTCTCTCTGATC







  • Image source snR41-SNORD7:

# STOCKHOLM 1.0
#=GF RW van Nues, July 2023
#=GF https://coalispr.codeberg.page/paper
Annot/1-49                 ------RTGATGA--------------------UUAGUGAGGU-CTGA---------------ATAACA--------------------RTGATGA-----------------AUUAGAAGAGACTGA----
#=GS snR41-SNORD7/1-90 DE intronic-boxCDsnoRNA-90nt-in-CNG03660 ncrna 7:1026933:1027023:-1 AE017347.1:c1027023-1026934 Cryptococcus neoformans var. neoformans JEC21 chromosome 7 sequence
snR41-SNORD7/1-90          --CATTAGGATGAAA-AAACA-----TCATTCCAGTTGTTCCGACTGAGCCGGC------ACCTATTGTCAC------------GTCGGCCAAGATT--------------TGTAATCTTCTCTCTGATC--
#=GS in-CNAG_03203/1-91 DE CP003827.1:339183-339273 Cryptococcus neoformans var. grubii H99 chromosome 8, complete sequence
in-CNAG_03203/1-91         --CATTAGGATGAAAAAAACA-----TCATTCCAGTTGTTCCGACTGAGCCGGC------ACCTATTGTCAC------------GTCGGCCAAGATT--------------TGTAATCTTCTCTCTGATC--
#=GS WM276/1-89 DE CP000292.1:312718-312806 Cryptococcus gattii WM276 chromosome G, complete sequence
WM276/1-89                 --CATTAGGATGAAACAAAC-------TATTCCAGTTGTTCCGACTGAGCCGGC------ACCTATTGTCAC------------GTCGGCTAAGATT--------------TGTAATCTTCTCTCTGATC--
#=GS R265/1-89 DE CP025765.1:299573-299661 Cryptococcus gattii VGII R265 chromosome 7, complete sequence
R265/1-89                  --CATTAGGACGAAACAAAC-------TATTCCAGTTGTTCCGACTGAGCCGGC------ACCTATTGTCAC------------GTCGGCTAAGATT--------------TGTAATCTTCTCTCTGATC--
#=GS CryFlo/1-90 DE RRZH01000007.1:c327683-327594 Cryptococcus floricola strain DSM 27421 chromosome 7 DSM27421_contig_07, whole genome shotgun sequence
CryFlo/1-90                -CTACAAGGATGAAA-AAAC------TTA-TCCAGTTGTTCCGACTGAGCCGGC------AAATATTGTCAC-----------GCCGTGCTAAGATT--------------TGTAATCTTCTCTCTGAAT--
#=GS CryWin/1-91 DE AWGH01000013.1:326358-326447 Cryptococcus wingfieldii CBS 7118 supercont1.13, whole genome shotgun sequence
CryWin/1-91                -CTACAAGGATGAAA-AAAC------TTA-TCCAGTTGTTCCGACTGAGCCGGC------AAATATTGTCAC-----------GCCGTGCTAAGATTC-------------TGTAATCTTCTCTCTGAAT--
#=GS CryAmy/1-92 DE MEKH01000007.1:c277303-277212 Cryptococcus amylolentus CBS 6273 supercont2.7, whole genome shotgun sequence
CryAmy/1-92                -CTACAAGGATGAAAAAAAA------CTTATCCAGTTGTTCCGACTGAGCCGGC------AAATATTGTCAC-----------GCCGTGCTAAGATT--------------TGTAATCTTCTCTCTGAAT--
#=GS KwoSha/1-87 DE NQVO01000011.1:c30623-30537 Kwoniella shandongensis strain CBS 12478 scaffold00011, whole genome shotgun sequence
KwoSha/1-87                -CCATCTTGATGACCAAAC--TAAAACGTATCAAATCATAACTACTGAGCCGGC-------------GTCA-------------GTCGGCTAGGAAA--------------CGTAATCTTCTCTCTGACC--
Annot-CD/1-12              ------------------------------AGGUCAACAAGG------------------------------------------------------------------------------------------
Annot-SC/1-12              -------------------------------GGUUAACAAGG------------------------------------------------------------------------------------------
#=GS SacCer-snR41/1-110 DE 18S:A541,18S:G1126 Saccharomyces_cerevisiae snR41 http://snoopy.med.miyazaki-u.ac.jp/snorna_db.cgi?mode=sno_info&id=Saccharomyces_cerevisiae300059
SacCer-snR41/1-110         TCCCCTATGATTAAAAATTATTAATCATATACCAATTGTTCCGACTGAATAGTGGTTTAACTACATGTCGACAACCCTTTTTCGTTAAGTTTCAGCCTTGTATGAGGGGT----------------------
#=GS HomSap-SNORD7/1-97 DE Homo_sapiens SNORD7 U6:A47  http://snoopy.med.miyazaki-u.ac.jp/snorna_db.cgi?mode=sno_info&id=Homo_sapiens300437
HomSap-SNORD7/1-97         -ATGCGATGATGAG-----------------TGAAGTAGAGCCTGACCTGGTATTGCCATTGCTTCACTGTTGGCTTTGACCAGGGTATGATCTC----------------T-TAATCTTCTCTCTGAGCTG
#=GS DanRer-snoZ30/1-99 DE U6 snRNA Danio_rerio snoZ30 http://snoopy.med.miyazaki-u.ac.jp/snorna_db.cgi?mode=sno_info&id=Danio_rerio300101
DanRer-snoZ30/1-99         -CTGTGCTGATGAG----------------CTGTGATTGTGTCTGACCTGGTATTGCTGTTCCTCCGGGAGTAACTCTGACCAGGGTCTGAAGAC----------------TGTAATCTTCTCTCTGAGCAG
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