snRcng00300

../../_images/snRcng00300_h99_igb.png

  • snRcng00300_intronic-boxCDsnoRNA-85nt-in-CNG0300

  • Within intron of CNG00300 (CNAG_03577) for 60S acidic ribosomal protein P0

../../_images/snRcng00300-align.png

  • Predicted target in 25S rRNA: gaaaTctccagtgga

  • Homologous position not known to be methylated in human or yeast.

  • Apart from 25S rRNA, no other transcript contains (G)AAATYTYYAGTGGA that base-pairs to the conserved guide.


>AE017347.1:71277-71361 Cryptococcus neoformans var. neoformans JEC21 chromosome 7 sequence
TTGCACGATGTTACATTTCTCAATCCACTGGAGATTTCCTAGCTCGCCAGAGCAAAGACGATCCAACCCT
TTTTTATCTGAAACT







  • Image source snRcng00300:

# STOCKHOLM 1.0
#=GF RW van Nues, July 2023
#=GF https://coalispr.codeberg.page/paper
Annot/1-41               -----RTGATGA-----------------AGGUGACCUCUAAAGCTGA---------------------------------RTGATGA----------------------------------------------CTGA--------------------------------------------CTGA--------------------------
#=GS snRcng00300/1-85 DE intronic-boxCDsnoRNA-in-CNG00300 ncrna 7:71276:71362:1
snRcng00300/1-85         -TTGCACGATGTT-ACA----TTTCTCAATCCACTGGAGATTTCCTAGCTC----------GCCA-----------GAGCAAAGACGATCCAAC------------------------------CCTTTTTTATCTGAAACT----------------------------------------------------------------------
#=GS CNAG_03577/1-86 DE 60S acidic ribosomal protein P0  CP003827.1:c1318800-1318715 Cryptococcus neoformans var. grubii H99 chromosome 8, complete sequence
CNAG_03577/1-86          -TTGCACGATGTT-ACA----TTTCTCAATCCACTGGAGATTTCCTAGCTC----------GCCA-----------GAGCAAAGACGATCCAACTTA---------------------------CCCATTTTATCTGAAA------------------------------------------------------------------------
#=GS R265/1-88 DE CP025765.1:c1180976-1180889 Cryptococcus gattii VGII R265 chromosome 7, complete sequence
R265/1-88                -TTGCAAGATGTT-ACA----TTTCTCAATCCACTGGAGATTTCCTAGCTC----------GCCA-----------GAGCAAAGACGATCCAACCTA---------------------------CCCTTTTTATCTGAAACT----------------------------------------------------------------------
#=GS WM276/1-88 DE CP000292.1:c1255262-1255175 Cryptococcus gattii WM276 chromosome G, complete sequence
WM276/1-88               -TTGCAAGATGTT-ACG----TTTCTCAATCCACTGGAGATTTCCTAGCTC----------GCCA-----------GAGCAAAGACGATCCAATCTA---------------------------CCCTTTATATCTGACACT----------------------------------------------------------------------
#=GS TreFuc/1-96 DE BRDD01000151.1:55391-55486 Tremella fuciformis NBRC 9317 DNA, KCNB80TF.151, whole genome shotgun sequence
TreFuc/1-96              -TTGCACGATGCA-ACAAC--TTTCTCAATCCACTGGAGATTTCCTACTCTGT-TC-----GACA------GACACAGAGCATGCCGATACTCGGTA-----------------------------TTCACACTCTGATCC-----------------------------------------------------------------------
#=GS TreYok/1-130 DE BRDC01000032.1:c104523-104394 Tremella yokohamensis NBRC 100148 DNA, KCNB35TY.32, whole genome shotgun sequence
TreYok/1-130             CTCGCACGATGCA-ACAA---CTTCTCAATCCACTGGAGATTTCCTACTCTGT---------TCG---------ACAGAGCATGCCGATACTCGGTA-----------------------------TTCACACTCTGATTCTATTTCTCTCTCGAGAGATGCC-----------------GTATGATGTTTAGAAGAA--------------
#=GS TreMes/1-133 DE SDIL01000131.1:c67188-67056 Tremella mesenterica strain ATCC 28783 supercont1.131, whole genome shotgun sequence
TreMes/1-133             -TCGTATGATGTT-ACAA----TTCTTCGTCCACTGGAGATTTCCTAGCC------------TCA------------GGCAAGGACGACATCCA-------------------------------TTAACCATTCTGACTACACACATCCTTTCTACAGTGACATGCGCTTGT----AAAATCTGAGATGATTTGCAT--------------
#=GS TreTag/1-141 DE CAJHEQ010000524.1:10030-10170 MAG: Tremellales sp. Tagirdzhanova-0007 genome assembly, contig: TREM_524, whole genome shotgun sequence
TreTag/1-141             -TCTGTGGATGTT-AC-----TTTCTCATTCTACTGGAGATTTCCTAGTTACTGGCT---TTACCGC----GGTCTCAAAGATGGAGTCG-----------------------------------TCTATAATTCTGAAATACTATCTCTCCCAAATCTTTTAAAAATGCTGGCGAGGTGGAGCAATATG----------------------
#=GS KwoHev/1-119 DE ASQC01000087.1:80560-80678 Kwoniella heveanensis CBS 569 cont2.87, whole genome shotgun sequence
KwoHev/1-119             TTCGCACGATGTCAATCATA-TTTCTCAATCCACTGGAGATTTCCTAGGTTCATAAGCCTGGCTTGACCGCGGGTGAACCGAAGAAGGAGACAAA----------------------TATTTAGTATTCACACTCTGATCCT----------------------------------------------------------------------
#=GS KwoMan/1-137 DE ASQF01000014.1:48763-48899 Kwoniella mangroviensis CBS 8886 cont1.14, whole genome shotgun sequence
KwoMan/1-137             TTGACACGATGT-AACGTAATTTTCTCAATCCACTGGAGATTTCCTAGACTTGG-TTA-TTCTTCCATC-TGGCTTAATCGCGGATGATCGAATGACCACGTCGACGATGGACTCAACATTATCGCTTTACCTTCTGACAC-----------------------------------------------------------------------
#=GS NaeAur/1-162 DE JAKFAO010000001.1:2483370-2483531 Naematelia aurantialba strain NX-20 Contig1, whole genome shotgun sequence
NaeAur/1-162             -GTTTCGGATGTTAGC-----TTTCTCATTCTACTGGAGATTTCCTAGACCCGGCTTT---ACCGC---------AGGTCCACGACGACGCA--------------------------------TTTTCTAAATCTGATTTTGTCGCTTGCCATCACAACCGTCCCTCGTATGTTGCTTGTGCTTATCAAGACTAGATCAAGGAGTACCTTG
#=GS NaeEnc/1-142 DE MCFC01000011.1:247894-248035 Naematelia encephala strain 68-887.2 BCR39scaffold_11, whole genome shotgun sequence
NaeEnc/1-142             CTTTCCGGATGC-AACA-----TTCTCATTCTACTGGAGATTTCCTAGACCCGGCTT---CACCGCA---------GGTCCGAGACGACCAACC------------------------------TTTCTATTATCTGATCTTCCTTTTTGTCCAGCGCGAAATCAATTCCACAGTGCTCTTGCTGATAAT----------------------
#=GC SS                  --------------------------------------------------((((((----------------))))))--------------------------------------------------------------------------------------------------------------------------------------
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