Pre-mRNA for PLC1 (Phosphoinositide phospholipase C) carries snoRNAs snR67 and snR53 in first two introns.
snR67-snoU31b¶
snR67-snoU31b_intronic-boxCDsnoRNA-115nt-in-CNC04820
Within 1st intron of CNC04820 for Phosphoinositide phospholipase C
Predicted target D’ guide in 25S rRNA: gctgGggcggca
Orthologue of yeast snR67 (D' guide), plant (e.g. Oryza sativa, Aegilops_tauschii) snoU31B
>AE017343.1:1459141-1459254 Cryptococcus neoformans var. neoformans JEC21 chromosome 3 sequence TGGCTATGAGGATTATTATTGTCGCCCCAGTCCTAATGGCCTCTATCCCATGCGTGGGGGACGCCTTGAGGATTGACTA TCTTCGCACAAGCCAAATGTTGCGTGCTGAGCCAT
snR67-snoU31B and snR53 in genetic context (with large non-conserved sections hidden)¶
snR53¶
snR53_intronic-boxCDsnoRNA-84nt-in-CNC04820
Within 2nd intron of CNC04820 mRNA for Phosphoinositide phospholipase C
Predicted target in 18S rRNA: ttAgcatggaat
Orthologue of yeast snR53
>AE017343.1:1459487-1459571 Cryptococcus neoformans var. neoformans JEC21 chromosome 3 sequence GCCCAACGATTAATACAATTTCCATGCTAAGACTGACCCTCATGGGGCTGAAGTCAATA TGTATATTCATTTAAATGAGGACTTT
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# STOCKHOLM 1.0
#=GF RW van Nues, May 2023
#=GS snoU31b/1-114 DE boxCDsnoRNA-115nt in CNC04820_PLC1_Phosphoinositide-phospholipase-C ncrna 3:1459140:1459254:1
snoU31b/1-114 --------TGGCTATGAGGATTATTA---TTGTCGCCCCAGTCCTAATG-GCCTCTATCCCA----TGCG----TGGGGGACGCCTTGAGGAT-TGACTATCTTCGCACA--AGCCAAA-TGTTGCGTG-CTGAGCCAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS JEC21/1-614 DE boxCDsnoRNA-115nt in CNC04820_PLC1_Phosphoinositide-phospholipase-C ncrna 3:1459140:1459254:1
JEC21/1-614 --------TGGCTATGAGGATTATTA---TTGTCGCCCCAGTCCTAATG-GCCTCTATCCCA----TGCG----TGGGGGACGCCTTGAGGAT-TGACTATCTTCGCACA--AGCCAAA-TGTTGCGTG-CTGAGCCATCATATAACATCCGTCTCTTACTCTATCCTTGCTTTTCGC------------------------------------------------------------------------------------------------------------------TTATGCTGACAACTAGATCTTTGTATGT----------CAGTGGCAGGACTCTCTAAACCAATGTTTTGCAGGTAGGCGACATATCTTCTGTAGATCGGA-------------------------------------------ATGTAAGTTTTTTGTGTGCCATTCATGAGTTTGTCAGATTCGTCACGGAGCTTCGTGTCTCCTTCGTATGCCAATGGCAGCTGCTGTGCGGCCTTGCAGAAGA--------------------------------------------------------------------------------------------------------------GCCCAACGA-TTAATACA-ATTTCCATGCTAAGACTGA-CCCT--------CAT--------GGGG-CTGAAGTCAATA-TGTATATTCAT--------TTAAATGAGGACTTTCCCCATTCATCGATTTTGGTTACAAATTTGATTG----------------------CAAAGAAAAA---------------ATGCTGATTTATCGACTT----------------------CAGAACATTTGTCGTCCGTCGAGTTGGCCCAAGCGCGTGGATTCTTGGATTCTTAACGCCATCTT-GGCCTTTTGTCTCCGCTGACGCGCCCTCATACGTTCATTTTTTTTGGATTGGCACT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS JEC21-exons_2,_3/4-179 DE CNC04820 3: 1,459,321 - 1,459,751
JEC21-exons_2,_3/4-179 ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGCAGGACTCTCTAAACCAATGTTTTGCAGGTAGGCGACATATCTTCTGTAGATCGGA-------------------------------------------AT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACATTTGTCGTCCGTCGAGTTGGCCCAAGCGCGTGGATTCTTGGATTCTTAACGCCATCTT-GGCCTTTTGTCTCCGCTGACGCGCCCTCATACGTTCATTTTTTTTGGATTGGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS WM276/1-114 DE CP000288.1:1410768-1410881 Cryptococcus gattii WM276 chromosome C, complete sequence
WM276/1-114 --------TGGCTATGAGGATTATTA---TTGTCGCCCCAGTCCTATTG-GCCTCTATCCCA----TGCG----TGGGGGACGCCTTGCGGAT-TGACTATCTTCGCACA--AGCCAAAC-GTTGCGTG-CTGAGCCAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS CryWin/1-816 DE CP034262.1:300856-301671 Cryptococcus wingfieldii strain CBS7118 chromosome 2, complete sequence
CryWin/1-816 ---TTCCCCGGCTATGACGATCATTA----TGTCGCCCCAGTCTTACTG-GCCTCTATCCCA----TGCG----TGGGGGACGCCCTGCAGAT-TGACCA--TT-GCACA--AGCCAAA-TGTTGCGTG-CTGAGCCACTTCTATCAACCTTTCTTCTATAAATATCTTCTGTTCCGGTCTTGGCAATAGAACGCATGACGCAGATGCTAATGAAGCCTTCGTTTGATAGCCACATCGACAGGTCGACCACAGAACAATGGACTTTCCATAGGTCA-----------AAGAGAGTAACTAGAT---------------------------CAGAATGTAAGCCTGCTTTCTCATACTCGTTCATCCATCGCGTTCTGCTGCGCTGCACGTCCAACCCAATCTCTTGGCAAGGATCAACGTGCAAT----------GCGTAAGTGCCAGAACCATTT-CAATCTTATCGCCCTTGCTGCTTGGGGCAACGA--------------------------------------------------------------------------------------------------------------------------------------------------------------GCCCAATGA-TTAAGAAAAATTTCCATGCTAAGACTGA-CCCT--------TAT--------GGGG-CTGAAGTCAATA-TGTATTCTTACAT--------GGATGAGGACTCTTTTTGCATTCTTTGTTTGGTGTATATCATTACGATG-------------------------AATTC---------------GAGCTGACGCAATATGCA----------------------CAGAACGCCCAATTACGATGAACCCGGCTACGATACAACAATCCGTCTTGCTTGCGCCAGATACCTTCAAGAGTTTCGAATCGATACCCTCGCCCCGCCGCCGCCGCCTTACCCTACCAAACATCATGTCACCCGCCACACCCTCCGGTGCCCTCGAAATGGAATCCGACCCCAGTGTCATCCCGCCACAATTAGCACAGGGCATCCCTATGCTCAAGATCTCTTCGCGAAAGATCAAACAAGTAATCTTTAAG--------------------------------------------------------------------------------------------------------------------
#=GS CryAmy/1-815 DE MEKH01000001.1:c1919010-1918196 Cryptococcus amylolentus CBS 6273 supercont2.1, whole genome shotgun sequence
CryAmy/1-815 ----TCCCCGGCTATGACGATCATTA----TGTCGCCCCAGTCTTACTG-GCCTCTATCCCA----TGCG----TGGGGGACGCCCTGCAGAT-TGACCA---TTGCACA--AGCCAAA-TGTTGCGTG-CTGAGCCACTTCTATCAACCTTTCTTCTATAAACATCTTCCGTTCCGGTCTCGGCAATAGAACGCATGACGCAGATGCTAATGAAGCCTTCGTTTGATAGCCACATCGACAGGTCGACCACAGAACAATGGACTTTCCATAGGTCA-----------AAGAGAGTAACTAGAT---------------------------CAGAATGTAAGCCTGCTTTTTCATA-----TCATCCATCGCGTTCTGCTGCGCTGCACGTCCAATCCATTCTCTTGGCAAGGAGCAACGTGCAAT----------GCGTAAGTGCCAGAACCATTATACTTCTTATCGCCCCTGCTGCTTGGGGCAACGA--------------------------------------------------------------------------------------------------------------------------------------------------------------GTCCAATGA-TTAAGAAAATTTTCCATGCTAAGACTGA-CCCT--------TAT--------GGGG-CTGAAGTCAATA-TGTATTCTTACAT--------GGATGAGGACTCTTTTTGTCTTCTTTGTTTGGTGTAAATCATCACGATG-------------------------AATTC---------------GAGCTGACGCAATATCCA----------------------CAGAACGCCCCATTACGATAAACCCGGCTACGATACAACAATCCATCTTGTTTGCGCCAGATACCCTCAGATTGATACCCTCAAGATTTTCGGAACGATACCCTCGCCCCGCCGCCGCCGCCTCACCCTACCAAACATCATGTCACCCGCCACACCCTCCAGTGCCCTCGAAATGGAATCCGACCCCAGTGTCATCCCGCCACAATTAGCACAGGGTGTCCCTATGCTCAAGATCTCTTCGCGAAAGATCAAACAAGT----------------------------------------------------------------------------------------------------------------
#=GS KwoShan/1-822 DE NQVO01000013.1:356992-357814 Kwoniella shandongensis strain CBS 12478 scaffold00013, whole genome shotgun sequence
KwoShan/1-822 CTTTTCACTCGCTATGATGACCACTA--TTTGTCGCCCCAGTCCTACTG-GCCTCTATCCCA---TATCA----TGGGGGACGCCTTGCGGAT-TGACTATCTTCGCACA-CAGCCAA---GTTGCGTG-CTGAGCCACACACACACCTATCCAACCGTCTTTCCTTTGCGATCTT------------------------------------------------------------------------------------------GGGATCTTCCCTTCATTGCTTGTGACATTTACTGACAGCAGTGACTTCTTTTGGTCATGT----CAGATTGCGTGTTGAGCGGATGATGAGCGGCAAATACATACCAGCTTCT--------------------------------------------------------TAGTGTGAGTAAATTCCCCATATTTCTATTCGAATTTTTCATCCTTCTTTCCCTCGCTCGCTTTTTTTTCCCACCACATGACCCATCATGTCCTCACCACTCCATTCCTATACCACCATCCCGCCACCTACCAAGAAGATGA-----------------------------------------------------------------------GCCCGAAGA-TGATTT-ACATTTCCATGCTAAGACTGA-CCC--------AAAA---------GGGGGTGAAGTCAGTA-CGTACATT---AAGAACGGCCAACTGAGGACTCATCTTCCATTTCCCTTCTTCCCTTGAATATAATTCTGATCGTGGCCGAAAGACAATGCTGACGCGCG---------------ACGCATTG--------------------------------CAGACGGACAAAGAACCATTGTCGGCTCCTATCAAGTCTAGTGCATCAAGCATCGAGTCGTTCCCGACCGTGCCGCCCCCGCCTCGGAGACGTGCGACAGTGCCTATCACCCAGCACGATTTTTCCGTGATGAGCAACCATGACGGTGTGGAAATCGTGCCACCGGCGCTGGTGCAGGGCGTGCCGATGCTTAAGATCTCTTCGAAGAAGATCAAGCAAGTCATCGTGCGGATACGAGGCGGCGGCA---------------------------------------------------------------------------------------------------------------------------
#=GS CryFag/1-773 DE BCHU01000003.1:485223-485995 Cryptococcus fagi DNA, scaffold: scaffold_2, strain: JCM 13614, whole genome shotgun sequence
CryFag/1-773 -------AAGGCTATGAGGACCACA-----TGTCGCCCCAGTCATAACTTGCCTCTATCCCG----TGCG----CGGGGGACGCATTGATGACTCGACCA--TTAGCACTACAGCCAA-TTGATGCGTA-CTGAGCCTTCATCTCTACTATACAACTCTCTCAAGGTATTGGAATA----------------------------------------------------------------------------------------------------------------------GAACTGACATTATGTT--------------------CAGATTACTATTAGATTTCATCAATAATTCTAAGTAAATTTATT-------------------------------------------------------------AGGTAAGTCTTCTTCCCTCCTTCATGTACCACCCCCACACTTCACACTCCAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------GCCCAAAGA-TGATTTAC-ATTTCCATGCTAAAACCGA-CATT----------C--------GAGT-ATGAAATAATTA-CGTACATT---AAGAACGGCCAGCTGAGGGCTCACTTCAACCAAAAATACTCTCTTAATCTTCATTCTCC----------------------AATCAAAT---------------AAATTGA---------------------------------TAGAATCAAGCTAACGAAAATTGTCACTTTAGTTTTACACCCCCGTTGTACCCCCCCAGATCAAACACAATTTGTAGATACCAGAACAATGCCATGCATATAATGATAATGATGAATACAATTTAAAATATGAACTACCTACTCCTTAGGAGCAGCAGCTTTCATTGCACCAGCCAACAACCTCCCGGCCGATCTATCACTAGCCTTCGCCTTTGATCGATCCAATTTAACTCTTTTGCCAACACCCGGAGATTGCTCTCGTGAAGATGTACCAGTTTCAGCTGGAAGAAATATCAATCAGTCCCAGGTCAAGTTCAACTTCAGCTCCATGACATACCTTCAAGTGGACGTTTTCTTTCACGTCCCTCCT
#=GS CrySki/1-714 DE BCHT01000006.1:c533212-532499 Cryptococcus skinneri DNA, scaffold: scaffold_5, strain: JCM 9039, whole genome shotgun sequence
CrySki/1-714 ------TTCGGCAATGACGACCACA-----TGTCGCCCCAGTCCTAACG-GCCTCTATCCCG----TTCT----CGGGGGACGCCTTGATGACTCGACCATT--TGCACTACAGCCAA-TTGATGCTTA-CTGAGCCACTATCATTGTCCATATTCACTCTATCTCATTTTGCTCGTG----------------------------------------------------------------------------------------TGGATGGGATGACCTCTGGTAGAATGATTAGCTGATCGAAATTTATCGTCAT------------CAGATCTTCGTTTCTTCCTCCTGGTTGCCAGTTGTAAATAT----------------------------------------------------------------AGGTGAGCATTCGATTATCCTGCTCGTGTTTTATTCTACCATTCTTGACTCTCAAACACATCTCGAAACTACCGAT-----------------------------------------------------------------------------------------------------------------------------------------GCCCAGCGA-TGATTTAC-ATTTCCATGCTAAGACTGA-TCCT--------TC---------GGGA-CTGATGTCCATA-TGTACATT---AAGAACGGCCAACTGAGGGCATCGTCGTTTACTCGTCTTTATTATTCCCCCTTTGCCGTGATCTCAGATATTATTCTGGAAGGAAGGAA---------------GCGCTGACTAAAGTCAA-----------------------CAGATCCGTTGTTTTCTTACCTCGACAGAGATAGCTAGAATCCTGTGCTGTTTTGGTGTTAAATCACCTTCTATACCAATATCAATGCTTATGCATGTCATTTCCGATCATGATGTATCGTGGACCCGATACACTGCTACCATGCTACATGTGAATGTGATTCCCATCCCCAAGGCGCCCTTACTTTCCTCCCTCCTTGCCAGAAGGCGTTGCAGCCTT-------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS VanPse/1-108 DE CP086716.1:c3422371-3422264 Vanrija pseudolonga isolate DUCC4014 chromosome 3
VanPse/1-108 --------TCATCAAGATGACCA-----TTTGTCGCCCCAGTCCTAACG-GCCTCTATCCC-----TGCG-----GGGGGACGCCTAGCGGACTCGAC------TGCACTC-AGCCAAATTGT-GCCCA-CTGAGCCAGCT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS VanHum/1-705 DE BCJF01000001.1:c2230356-2229652 Vanrija humicola DNA, scaffold: scaffold_0, strain: JCM 1457, whole genome shotgun sequence
VanHum/1-705 --------TCATCAAGATGACCAAC-----TGTCGCCCCAGTCCTAACG-GCCTCTATCCC-----TGCG-----GGGGGACGCCTCGCGGACTCGAC------TGCACTC-AGCCAAATTGT-GCCCA-CTGAGCATGCTGCGCTCCTTGCGCTCCCTGTTGTGCCCCTA-------------------------------------------------------------------------------------------------------CCGCCCGTGCGAAAGTGGCACTGCTGACGAAAAA----------------------CAGGTGTGGCTCTCCGACCTCCCCCAGACCATCGTCTACCT----------------------------------------------------------------ATGTAAGTCGCTCTTCCGCTCTTTCCCCTCTCTTTGACACGAGATGCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCTAAGGATAGAACTACTATGTCCATGCTAATCCAGACGGGC-------CTAAGC------GCCCTATGGTGTCAAAAACGTACATT---AAGAACGGCCAACTGAGGGCATCATCTCGTGTCTC-------------------------------CCCCTCGAAAGTGGTGGAGAACT---------------GCGCTGACAACGG---------------------------CAGGTGTTGTTTTTTAGTATTAGTTGTAATGTGATTATGTGCCTGAATATTAGCGGAAGCAATTTTTCATTACCCTGAGATCAGAGATTATGGAACTTGCGCACGACGGTGCACTTGTTACACGTCGGAAGTTCACCAAAGTGCCACAGACATGACCATACTACTCCGTAGCTTATGGAATAACAAGACCGCGCTGCACTAAGCCTGGCAGGCAGCAGTGGGGGTGGGTTGGGTTGGAGGAGGGGTGGGGTGAGTCGGGGTGGTGGGTGGGTGTGGTGGGGTGGTCGGTTTTGTGGCA------------------------------------------------------------------------
#=GS PapLau/1-717 DE JDSR01001141.1:39165-39887 Papiliotrema laurentii RY1 contig_1180, whole genome shotgun sequence
PapLau/1-717 ------TCCCATCCTGATGACCTTT----TTGTCGCCCCAGTCCTACGG-GCCTCTATCCC-----TGCG-----GGGGGACGCCATGCGGATCCGAC----ATAGCACA--AGCCAAAC-GTTGCACCTCTGACCTTTCTATCCGTTCTCTCGTCCTTCTTTCAACGCGC------------------------------------------------------------------------------------------------------------AGGTGTGAGAGGATAGAACTGACAAATAGTCGACGGTG-------------CAAGATCAATGAGACGGAACCGCTAGATTGTCGACAGGGTTTCAGATTCAACTTCAAG-----------------------------------------------CCGTGAGTGTCCTCCCTCGTTTGTTCTTCTCGTCGGGC---CTGTCTCGTGCGACACTGGGATCACTGGAGGAGAAGTCTGAGGCGTTT----------------------------------------------------------------------------------------------------------------------------GCCTTATGA-TGATTTAC-ATTTCCATGCTAAAGCTGATCCCT---------AC--------GGGGACTGAAGTCACAA-CGTACATT---AAGAACGGCCAGCTGAGGGCATCCGCACAGACTTCTCCTTTCTCGATCTTTT-----CCTATATTGCGTGAAAGAGAAACGTCGAACGG---------------TAGCTTACGAG-----------------------------CAGGTCAAGCTTCCATCAATACACGACTCAAGATGGCCAGTCAAGACGCCAAGAAGAGCTTTGTCGTTCCACCGGCGCTGTGTCGTGGGGTCCCGATGCTCAAGATTTCTAGCAAGAAGATTAAGCAAGTCATCATTCGGATTCAGGACGGTGCGATCGACTGGCAAAATTTGAAAGGCACCAAAAGTAAGCCGTCTCCCTCTGCTCTGAATTTCTCATCCTCTGAGAC---------------------------------------------------------------------------------------------------------------------------------------------
#=GS VanFra/1-708 DE BEDY01000008.1:388185-388892 Vanrija fragicola DNA, scaffold: scaffold_8, strain: JCM 1530, whole genome shotgun sequence
VanFra/1-708 ---------TATCATGATGATCATTA---TTGTCGCCCCAGTCCTACTG-GCCTCTATCCC-----TGCG-----GGGGGACGCCTTGAGGAT-CGAC-----TCGCACTC-AGCCAAATAGTTGCTCA-CTGAGCCTTCAATCCTTCACTTTTCTTTGACATGTGTTGAAACAA-----------------------------------------------------------------------------------------------------------------------GTGCTGACGATAA-----------------------AAGGTTGCTTGCACACTGTGCGAGGATGGCGGCCCGCCTTGGGATATGAACACA---------------------------------------------------GTGTGAGTATCCATTCCAGCCCCCTACACTCCACACCCACCCCGTCGCATGCGA----GTGCGACACGGCGCAGGAGCTCTCCAGCGAGGAGAGTTGCTGCTGCCT-----------------------------------------------------------------------------------------------------------GCCCAAGGA-TGATTTAC--TTTCCATGCTAAGACTGA-GTCCG------AACC-------TGGACGGTGACGTCGAAAATGTACATT---AAGAACGGCCAACTTAGGGCATCTACCACAACCTACCCTTTCTTTCCTACCAT------CTCTTTTCCCCGTTCTTAAAGATGGTGCAG---------------ACGCTGACTATGTCT-------------------------CAGGGTTGATCCACTGTTATTGAATGTAGTATTGTAGCTTGGGATGCTTGCGTCCAATGTATCGATTTGTTGTCTCCGCGTTGTTGCGTCCAGTGTGGTTTAGTGATCGTCATGCTTGTTCTGCCCGGTGGGTGGCTGTTGAAGTTGAGCGCCAACATTGACTTCAGTGCCAGGGTTCGTGTGCATGATCTGTTAATCCGTGTCCTCATCCCGTAGTAAGCCTCAT------------------------------------------------------------------------------------------------------------------------------------------------
#=GS CryFla/1-594 DE CAUG01000320.1:87906-88499 Cryptococcus flavescens NRRL Y-50378 WGS project CAUG00000000 data, contig NODE_521_length_156233_cov_46_674690, whole genome shotgun sequence
CryFla/1-594 ------TCCCATCCTGATGACTC----TTTTGTCGCCCCAGTCCTATGG-GCCTCTATCCCT-----GC-----GGGGGGACGCCTTGCGGATCCGAC----ACAGCACA--AGCCAAAC-GTTGCACCTCTGACCTCGACCTCTAATCATCCCTCGTTGTTTGGTCATTCGAGT---------------------------------------------------------------------------------------------------------------------CAGCGCTGACTCG-------------------------CAGTGAGGGGTAGCTGCAGGCGGAGAGCGCGTACCAAGCGTTGACCGACACACGACCTCCATCTCA---------------------------------------AGGTGTGTTTTTTTCTGCGTCTCTTTTGATCCCTTTCTCGAAGAGCCAACTGCGCGACACGAT------------------------------------------------------------------------------------------------------------------------------------------------------GCCCTGCGA-TGATTTAC-ATTTCCATGCTAAAACTGA-CCCT--------ACG--------GGGG-TTGAAGTTAA-A-CGTACATT---AAGAACGGCCAGCTGAGGGCATCATCGCGAGATTGG--------------------TTCTTAGGGAGGAGGGCGTCGGCAACGAGATCG---------------ATGCTGACTCT-----------------------------CAGAGCATCTAGTCTCCATCATGCCCCCGCCGATCACGTCCGAGCCGCCCTCGGCAGCCGCAGCGGCAGCCGACNNNNNNNNNNATGGTACAGTCGTGCCGCCGGCTCTGGTGCGCGGCGTGCCGATGCTCAAGATATCGAGTAAGAAGATCAAGCAAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS TakKor/1-593 DE BCKT01000015.1:381996-382588 Takashimella koratensis DNA, scaffold: scaffold_14, strain: JCM 12878, whole genome shotgun sequence
TakKor/1-593 ----------TCATTGATGACCACG---TTTGTCGCCCCAGTCCTATGG-GCCTCTATCCCT-----GC-----GGGGGGACGCCATGCGGAT-CGACATTCTTCAT-----AGCCAAAATGATACTTG-CTGAGAACTATCCCAACACACACCTCTCTCCCCCTCACTCTTCCT------------------------------------------------------------------------------------------------------------------------CTCTGATTTTGGTATCTTTCCTGGTCTCGGCTGGGTTGATCGAGTGGGAACAAGGTGCTAACGGATTTCGTCGACGAAACACA---------------------------------------------GTGCATGTAACCTAGTGTTTGTTTATTTTACTTGATAGCTTGCTAGGGGATTGACGAGCGCGCCGTGTCGCGCTCGACTTGTTTGATCGTAAGTCACTGTTCTCTCGTGTTATGCTTGTGACTTGCGCCTTCTCTTCCATGTCTCCTTTCCCTTGCCTGCCCTCCTATCCTTCCACCCTCCACCGCTCCCCACTCTATCCCAAT---------------------GCCCAGCGA-TGATCTGC-ATTTCCATGCTAAGACTGATCCCT--------AC---------GGGGGATGAAGTCACAATTGTAACT-CATAAGAACGGCCAGCTGAGGGCTTTCGACAACACAGAATTTTCCTATCCCTTCTCTCCACTTCCCCTCGTGTTCTTATTCTCCACAAACGTGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS snR53/1-85 DE intronic-boxCDsnoRNA-84nt-in-CNC04820-PLC1_Phosphoinositide-phospholipase-C mRNA 3:1459486:1459570:1
snR53/1-85 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCCAACGA-TTAATACA-ATTTCCATGCTAAGACTGA-CCCT--------CAT--------GGGG-CTGAAGTCAATA-TGTATATTCATTT--------AAATGAGGACTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS H99/1-614 DE CP003822.1:c574874-574261 Cryptococcus neoformans var. grubii H99 chromosome 3, complete sequence
H99/1-614 --------TGGCTATGAGGATTATTA---TTGTCGCCCCAGTCCTATTG-GCCTCTATCCCA----TGCG----TGGGGGACGCCTTGCGGAT-TGACTATCTTCGCACA--AGCCAAAC-GTTGCGTG-CTGAGCCATTATATAACATTCATCTCTTATTACTCTACCCTTGCTTTT---------------------------------------------------------------------------------------------------------------CGCTTATGCTGACAACCAGACCT-TGTATGT----------CAGTGATAGGACTCTCTAAACCAATGTGTTTCAGGTGGACGACATATCTTCTGTAGATCGGA-------------------------------------------ATGTAAGTCTTTTGTATGCCATCTATGAGTTTGTCAATTCTGTTACGGAGGTTCCTGTCTCCTTCATGTGCCAATGGCAGCTGCTGTGCGGCCTCGCAGAAGA--------------------------------------------------------------------------------------------------------------GCCCAACGA-TTAATACA-ATTTCCATGCTAAGACTGA-CCCT--------CAT--------GGGG-CTGAAGTCAATA-TGTATATTCATTT---------AATGAGGACTTTTCATATTCATCGATGTTTGGTGACAGATTTGGTTGCGAAGAG--------------------------------------AATGCTGATTTGTCCACTT----------------------CAGAACGTTTGTCGTCTGTCAAATTGGCCTAAACGCGTGGATTCTTGGATTTTCAACGCCACCTTTGGCCTTTTACCTCCGCTGACTCGTCCTCACTTTTCAACCGTCGTCCGTTCTTTGG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS KwoDej/1-821 DE ASCJ01000004.1:1715495-1716315 Kwoniella dejecticola CBS 10117 cont1.4, whole genome shotgun sequence
KwoDej/1-821 ---CTTCCCGGCTATGATGATTATTA--TTTGTCGCCCCAGTCCTAATG-GCCTCTATCCCA----TGCG----TGGGGGACGCCTTGTGGAT-TGACCTTTTTCGCACTCCAGCC-TTTTGTTGCGTCTCTGAGCCGTCCTTATTACATCACATCTTATCTGCTAAGATT--------------------------------------------------GTGACTACCTTCCATTATTCTTAATCATACTTACATTCCCTGCCGTGATGGGTAA----------------CAGAGCTGACTTTGTCACTCCGCCTT--CTCGTCCGA-CAGGATCAAAGGATATCCGGAGGTACGACCACCCGATGATGCTTGTATGGGCAATATTTAAGTAGAAG------------------------GCTTTTCTTGACGATGTAAGTGAGAATTCTGGCTATTCTTGACTCTTTCGTTATCAATTCATGCATCATCGTATATTGTTATTGGTATTCTCATTCCACTCGTATCTGTCCGAGCGCTTGGTCTTTCTCCAACGCTTGGCTCTCACACACATTCTCATGTCATACCAAATGTATGATC------------------------------------------------GCCCAAAGA-TTAATT-ACTTTTCCATGCTAAGACTGA-CCCAAA----ACAATAA----TATGGGATTGAAGTCAGTA-TGTATCTATGCTT--------TGATGAGGGCTTTCTCCCACTCTATCGTTCATTGATTTCCCCATGCAAGCTGCTACCTTGATTTACGATATCGGCC---------------GACATGCTGACGATCTATGAATGATTA----------------CAGAGATCGAGTAGTATCCACTCTGCACCTGTTTCGCCTATCACTGCAGAACCAGAATCGTATCTTCCATCAGTGCCTGGACCTGCGCCCCGCAAGACCCAGCCCAAACGTAGATTCACCTTACCTACAAGAACATCACGCTTGCC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS KwoMan/1-816 DE ASQF01000028.1:c442118-441303 Kwoniella mangroviensis CBS 8886 cont1.28, whole genome shotgun sequence
KwoMan/1-816 --------CGGCTATGATGATTATTA--TTTGTCGCCCCAGTCCTAATG-GCCTCTATCCCA----TGCG----TGGGGGACGCCTTGTGGAT-TGACTCTATTCGCACTCCAGCC-TTTTGTTGCGTCTCTGAGCCGTCTTATCTCTCTCCCTTCACTTTCGCGATCCGGTATGATGTAAGGGAGGTCTCGGTGCCTTCCTTTCAGATACCCATCGTGATACGTTGAAGAGGGACCTTCCGCTATTCCTCGTTGATGTCGTACGTGGTGATGGGTTGT----------------CGCTGACGATTATTCGCTGGTCGCCTTCGTCCGA-CAGCGGTCACTCGAAAAGAAGACAATGGATGTTCGACAATAGCTTGGAAAGCAGTATTTGACCTGAT--------------------------------------ATGTAAGTAGATCCAATCAAGATTATCCATGCATTCTTTACTTTCCTTCGATTCTTTCTGCATGCGCATCACCCATCTGCCATAACATCTTCAAAATCTCACTTTCCTTGATTGCTACTTGAATGGTCTATCCGATTCCCATCATCCCCATTCCACCATGTCACCTCCCGATA----------------------------------------GCCCAACGA-TTAATT-ACTTTTCCATGCTAAGACTGA-CCC-------AACAAAC-------GGGATTGAAGTCAGTA-TGTATCATTGCTT--------TGATGAGGGCTCTTATCGTCTACTCCAATCTTACATTGCATTATGTTGATAATATATCTGGTGTC----------------------------GATACTGACATCCCTGTGTTTGCCTTT--------------CAGAAATCGGATAGTATACATTCGGCACCTGCATCCCCAATCTCTGCCGAACCCGAAAGCTACTTTCCATCTGTACCTGCACCTGCACCCGCTTCTCGACCCAAACGGCGATTCACC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS KwoHev/1-820 DE ASQC01000009.1:138330-139149 Kwoniella heveanensis CBS 569 cont2.9, whole genome shotgun sequence
KwoHev/1-820 ---CTTCCTGGCTATGATGACCATTG--TTTGTCGCCCCAGTCCTACTG-GCCTCTATCCCA----TGCG----TGGGGGACGCCTTGCGGAT-TGACCTTCTTCGCACACCAGCCAA-TAGTTGCGTG-CTGAGCCGAAAATACACCCTTCTTCTTTTCATCTTCAACACCCC-------------------------------------------------------------------------GCCTTTCTTTTGT----------------CCGAGGGGGTTTTCCCCCCATCTGAGGATGGT----------------------CAGCGCTGACTTCGATTTGTTCGTCTCGGTCTGACAGTCGATGATCAAAGGATGATCTGCAAGGACAAGTAGGCGCTTCAGCAAAGTATCGAGACCTCGCATCCATCGTGAGTCATATCTATCTATCTATCTATCTATCTAGCTGGTCATGGTTTCCGCCGCCGCATGCATTGTCCATGTTGTACACTCTTCTCGCCTTTCTATCACAATTCCATCGCACCCGTCACTTCCTGCTGCAGATGTCTTGATCCCGATATCCCCTCAATCCATATGCACAAGTCGTTTTCACTCAACCAGCATCTCTTCTACCACCATGA-GCCCAACGA-TTAATT-ACTTTTCCATGCTAAGACTGA-CCC--------AGCC---------GGGATTGAAGTCAGTA-TGTATCATTGCT---------TAATGAGGGCTTCTCCATCAACCGTCTTCCAAGTTTGCTAGAACCGTGATATTGCGGGTGATGTGTCTGTTCTATCACTTTGTGGATTGAGCGAGAGCTGACGTGAACTCTTGCCATTCTCTCTCGCTGGAACACAGAAAGCCGACTCGGTCCATTCAGCTCCAGTCTCGCCTGCCAGCGAAGAATCAATCTCGCTCTTTCCTACGGTTCCCGAGCCAGCTCGACCGAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Annot/1-87 -------------RTGATGA----------ACGGCGGGGTCGCTGA------------------------------------------RTGA--TGA---------------------------------CTGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGA-----------------------------YAG--------------------------------------------------------------------------------------------------------GTGxGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RTGA-TGA--------AAGGUACGAUU--CTGA-----------------------------RTGATGA-----------------------------CTGA-------------------------------------------------------------------------------------------CTGA---------------------------------YAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS OrySat-snoU31b/1-86 DE Oryza_sativa snoU31b O_sativa300049
OrySat-snoU31b/1-86 ---------GAGCATGATGAGTATGAT-TTTGTCGCCCCAGTCTTA-----GG---ATCCG----AATTA-------CGGAT-CTGTGCTGAT-TGACAT--------------------GTTATCAAATCTGACTC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS AegTau-snoU31b/1-87 DE Aegilops_tauschii snoU31b A_tauschii300016 28S:G2618
AegTau-snoU31b/1-87 ---------GAGGATGATGATTTCATA-TTTGTCGCCCCAGTCTTA-----GG---GTCCGCT----TC------AGTGTAT-CTGTGCTGAT-TGACAT--------------------ACTTCTGAATCTGACTC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS TriDic/1-87 DE Triticum_dicoccoides T_dicoccoides300039
TriDic/1-87 ---------GAGGATGATGATTTCAAA-TTTGTCGCCCCAGTCTTA-----GG---GTCCGCT----TA------GGTGGAT-CTGTGCTGAT-TGACAT--------------------ACTACTTAATCTGACCT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS TriAes/1-90 DE Triticum_aestivum T_aestivum300220
TriAes/1-90 ---------GAGCGTGATGACATGGATTTTTGTCGCCCCAGTCTTA-----GG---ATCCGGC----TC------GCCGGAC-CTGTGCTGAT-TGACATAC------------------GTTATCTAATCTGACTC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS PhyPat/1-86 DE Physcomitrium_patens P_patens300034
PhyPat/1-86 ---------GGATGTGATGATGAGAAA--TTGTCGCCCCAGTCCTACT--CGG---ACGCG-----TAA--------TGCGT-TTG--CTGA--GGAT-TGACTA----------------TTTATCAGTCTGATTC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS SacCer-snR67/1-82 DE Saccharomyces_cerevisiae snR67 25S:G2619,25S:U2724
SacCer-snR67/1-82 ---------TAACATGATGACTAAG----TTGTCGCCCCAAGCGGA-----------TC-------TTT----------GA------AATGAC-TGATTTT------ACAAACAACAAACACTGAAAATTCTGAAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS SacCer-snR53/1-91 DE Saccharomyces_cerevisiae snR53 18S:A796
SacCer-snR53/1-91 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGATGA-TGATTACA---CTCCATGCTAATCATGAACGTGTTCGA-TGTAAAT---TTGAATACGATGATTAAAATTGT-----TGTTT----ACGCTTT-CTGAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS AraTha-SnoR53Y/1-74 DE Arabidopsis_thaliana SnoR53Y 18S:A799
AraTha-SnoR53Y/1-74 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAATTGA-TGATTACA---CTCCATGCTAAGGACAAACAGTTC----AAAAATACA---------AATGATATAT-----------GT-----------GT-CTGAGGGAATT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GC SS_cons ---------(((---------------------------------------------((((((-----------))))))------------------------------------------------------)))------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------(((((----------------------------------((((-------------------))))----------------------------------------)))))---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
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