snR58

../../_images/snR58_h99_igb.png

  • snR58_intronic-boxCDsnoRNA-87nt-in-CNG02860

  • Within 1st intron of CNG02860 (CNAG_03289) for methionine aminopeptidase 2

  • Predicted target in 25S rRNA: gagtCtaacatat

  • Orthologue of yeast snR58, plant snoR64

../../_images/snR58-align.png

>AE017347.1:c797770-797684 Cryptococcus neoformans var. neoformans JEC21 chromosome 7 sequence
TTCCATGATGCTTGTCACCAAGATATGTTAGACTTCTGTAGTGAGGCTTGTCCTCCCGCAGTAGATACCC
TTTTCGACTACTGAGAC







  • Image source snR58:

# STOCKHOLM 1.0
#=GF RW van Nues, July 2023
#=GF https://coalispr.codeberg.page/paper
Annot/1-35                 --------RTGATGA------------------UAUACAAUCUGAGCTGA-----------------------RTGATGA-------------------CTGA--------
#=GS snR58/1-87 DE intronic-boxCDsnoRNA-87nt-in-CNG02860
snR58/1-87                 ----TTCCATGATGCTTGT-------CACCAAGATATGTTAGACTTCTGTAGTGAGG--CTTGT--CCTCCCGCAGTAGATACC---CTTTTCGACT-ACTGAGAC-----
#=GS CNAG_03289/1-87 DE CP003827.1:573508-573594 Cryptococcus neoformans var. grubii H99 chromosome 8, complete sequence
CNAG_03289/1-87            ----TTCCGTGATGCTTGT-------CACCAAGATATGTTAGACTTCTGTAGTGAGG--CTTGT--CCTCCCGCAGTAGATACC---CTTTTTGACT-ACTGAGAC-----
#=GS WM276/1-87 DE CP000292.1:547913-547999 Cryptococcus gattii WM276 chromosome G, complete sequence
WM276/1-87                 ----TTCCGTGATGCTTGT-------CACCAAGATATGTTAGACTTCTGTAGTGAGG--CTTGT--CCTCCCGCAGTAGATACC---CTTTTCGACT-CCTGAGAC-----
#=GS R265/1-87 DE CP025765.1:479557-479643 Cryptococcus gattii VGII R265 chromosome 7, complete sequence
R265/1-87                  ----TTCCGTGATGCTTGT-------CACCCAGATATGTTAGACTTCTGTAGTGAGG--CTTGT--CCTCCCGCAGTAGATACC---CTTTTCGACT-CCTGAGAC-----
#=GS CryWin/1-87 DE CP034274.1:c451976-451890 Cryptococcus wingfieldii strain CBS7118 chromosome 14, complete sequence
CryWin/1-87                ----TCCTATGATGCTTGT-------CACCAAGATATGTTAGACTTCTGCAGCTCGGC-TTCG--GTCGGGCACAGTAGATA-----CTTTTCGACTCCCTGAGAC-----
#=GS KwoSha/1-89 DE NQVO01000061.1:26790-26878 Kwoniella shandongensis strain CBS 12478 scaffold00061, whole genome shotgun sequence
KwoSha/1-89                ----TTCAATGATGCTTGT-------CACCAAGATATGTTAGACTTCTGCAGGGATGA--TTCG-TCATCCCACAGTAGATACTTT-ACTTTAGACT-TCTGAGA------
#=GS CryFlo/1-87 DE RRZH01000015.1:500439-500525 Cryptococcus floricola strain DSM 27421 chromosome 14, whole genome shotgun sequence
CryFlo/1-87                ----TCCTATGATGCTTGT-------CACCAAGATATGTTAGACTTCTGCAGCTCGGC--TTCG-GTCGGGCACAGTAGATA-----CTTTTCGACTCCCTGAGAC-----
#=GS CryAmy/1-87 DE MEKH01000013.1:494903-494989 Cryptococcus amylolentus CBS 6273 supercont2.13, whole genome shotgun sequence
CryAmy/1-87                ----TCCTATGATGCTTGT-------CACCAAGATATGTTAGACTTCTGCAGCTCGGC--TTCG-GTCGGGCACAGTAGATA-----CTTTTCGACTCCCTGAGAC-----
#=GS KwoMan/1-86 DE ASQF01000015.1:509409-509494 Kwoniella mangroviensis CBS 8886 cont1.15, whole genome shotgun sequence
KwoMan/1-86                ---TCTCAATGATGCTTGT-------CACCAAGATATGTTAGACTTCTGTAAGAGTA---CTTG---TGCTCGCAGTAGAAACTT--CTTAATGACT-TCTGAGA------
#=GS KwoHev/1-90 DE ASQB01000031.1:518906-518995 Kwoniella heveanensis BCC8398 cont1.31, whole genome shotgun sequence
KwoHev/1-90                --CCCTCTATGATGCTTGT-------CAAAAAGATATGTTAGACTTCTGCAGATTGC---TTCG--GCGGTCATAGTAGATAACC-TTTATTCGAC-ACCTGAGAG-----
#=GS TriOvo/1-87 DE JXYN01000003.1:c1706090-1706004 Trichosporon ovoides strain JCM 9940 scaffold_0003, whole genome shotgun sequence
TriOvo/1-87                ---TCTCGATGATGCTCGT-------CACAACGATATGTTAGACTTCAGCAGGAGT----TTA----ACTCCACAGTCGATAACCA-CTTTTTGACT--CTGAGAGAA---
#=GS TriInk/1-84 DE QAYW01010021.1:369-452 Trichosporon inkin strain C-2155 NODE_10033_length_551_cov_3.4135_ID_249325, whole genome shotgun sequence
TriInk/1-84                ---TCTCTATGATGCTCGT-------CACAACGATATGTTAGACTTCAGCAGGAGT----TTA----ACTCCACAGTCGATAACCA-CTTTTTGACT--CTGAGA------
#=GS TriAsa/1-88 DE SCGW01000666.1:19630-19717 MAG: Trichosporon asahii isolate N5_275_008G1 N5_275_008G1_scaffold_911, whole genome shotgun sequence
TriAsa/1-88                --TTCTCGATGATGTTCGT-------CACCACGATATGTTAGACTTCAGCAGGAGT----TTA----ACTCCACAGTTGACAAACT-ATTTTTGAC--GCTGAGAGAT---
#=GS BulAlb/1-88 DE CAMYTR010000141.1:78812-78899 Bullera alba genome assembly, contig: jcf7180000012242, whole genome shotgun sequence
BulAlb/1-88                ---GTCACATGATGCTCGTC-----ACCAAACGATATGTTAGACTTCCGAGGTG-----CTCTGT---CACTACTGAGGAAGCACAACCTTTTGACG-TCTGATG------
#=GS CrySki/1-88 DE BCHT01000001.1:1004740-1004827 Cryptococcus skinneri DNA, scaffold: scaffold_0, strain: JCM 9039, whole genome shotgun sequence
CrySki/1-88                --TCGTCAATGATGTAT---------CATCACGATATGTTAGACTTCTCGAGGAGCGT--AAG--ACCCTCCAAAGTAGATAC----CCATTTGATACCCTGAGACC----
#=GS NaeEnc/1-91 DE MCFC01000002.1:506509-506599 Naematelia encephala strain 68-887.2 BCR39scaffold_2, whole genome shotgun sequence
NaeEnc/1-91                ---TCACAGTGATGCTCGT-------CATTTCGATATGTTAGACTTCTGCAGCGGTCG--TTG--CGGCCCCAAAGTAGATAC----ATTTAAGACA-CCTGATCCTTCC-
#=GS NaeAur/1-90 DE JAKFAO010000009.1:584273-584362 Naematelia aurantialba strain NX-20 Contig9, whole genome shotgun sequence
NaeAur/1-90                ---CCACAATGATGTTCGT--------CAACCGATATGTTAGACTTCTGCAGTGGCC---GCGA--GGCTCCAAGACAGACAATG--TACCTCGACA-CCTGAGCCTTC--
#=GS TreFuc/1-87 DE LBGW01001021.1:c8272-8186 Tremella fuciformis strain tr26 contig1021, whole genome shotgun sequence
TreFuc/1-87                ----CCAAATGATGCTCGT------CATACACGATATGTTAGACTTCGGCAGGTCC-----TC----GGACCACAGTCGAGAACA--ACCTTTGAC--CCTGATTGACCC-
#=GS TreTag/1-88 DE CAJHEQ010000400.1:9657-9744 MAG: Tremellales sp. Tagirdzhanova-0007 genome assembly, contig: TREM_400, whole genome shotgun sequence
TreTag/1-88                ---TCTCCATGATGCCCGT-------CATATCGATATGTTAGACTTCTCGAGGAGC----CAC----GCTCCGACGTAGATAT----CATCTTGACA-TCTGAGAGAATTC
Annot_SC/1-35              --------RTGATGA------------------UCUGCAAUCUGAGCTGA-----------------------RTGATGA-------------------CTGA--------
#=GS SacCer-snR58/1-96 DE 25S:C663 Saccharomyces_cerevisiae snR58 http://snoopy.med.miyazaki-u.ac.jp/snorna_db.cgi?mode=sno_info&id=Saccharomyces_cerevisiae300024
SacCer-snR58/1-96          ----CTTTATGATGATATTCTTTACGAACTTTTAGACGTTAGACTTCTGAAGGAG--ATTAGACC--CTCCTATGGAAGAGAAACTCGTTAAACTTA-TCTGAGT------
Annot_HV/1-36              --------RTGATGA-----------------GYGUACAGUCUGAGCTGA-----------------------RTGATGA-------------------CTGA--------
#=GS HorVul-snoR64/1-93 DE Hordeum_vulgare snoR64 http://snoopy.med.miyazaki-u.ac.jp/snorna_db.cgi?mode=sno_info&id=Hordeum_vulgare300331
HorVul-snoR64/1-93         TCGTTGTGGTGATGAATTATG-----AGTTTTTGCATGTTAGACTTCAGAGATGC---ATCTG----GTGTCAATGAGAAGTCA--TATCATATGC---CTGAGCAATGA-
#=GC SS_cons               ----------------------------------------------------((((----------))))-----------------------------------------
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