snR72¶
snR72 intronic_boxCDsnoRNA-122nt-in-CNF01490-as-CNAG_12684
Within unannotated intron of CNF01490 for expressed, ribonuclease H-like protein with integrase catalytic domain (linking it to a transposable element); protein-gene context not conserved
Predicted target in 25S rRNA: ctgAcgtgcaaatc
D’-box acga is irregular, and assignment of the C’ box is tentative (only one of the uga-motifs is discernible)
>AE017346.1:436488-436607 Cryptococcus neoformans var. neoformans JEC21 chromosome 6 sequence TTTCGGACGAAATTTGCTCGACATTTGCACGTCAGTACGACTACTCTTGAATGGCCAGATGTCTTCGGAC GCTGCAACCAGGCTTGAGTATAGAGGCGTTTACTTCGCATCATCTGATTT
Downstream exon expresses a H/ACA snoRNA (HACAcnag12684), which appears to be conserved in Tremellomycetes but not all; snR72 is not upstream the HACA snoRNA in C. skinneri
Image source snR72:
# STOCKHOLM 1.0
#=GF RW van Nues, July 2023
#=GF https://coalispr.codeberg.page/paper
#=GS snR72/1-120 DE intronic_boxCDsnoRNA-122nt-in-CNF01490-as-CNAG_12684 ncrna 6:436487:436607:1
snR72/1-120 ----------------------------------------------------TTTCGGACGAAAT---TTGCT-CGA-CATTTGCACGTCAGTACGAC--TACTCTTG-------AA-------TGG--C--CAGATGTC--TTCG--GACG-CTG-CAA--CCA-----GG--------CTTGAGTA-TAGAGGCGTTT-ACTT--CGCAT-CATCTGATTT--------------------------------------------------------------
#=GS R265/1-120 DE CP025763.1:c917047-916928 Cryptococcus gattii VGII R265 chromosome 5, complete sequence
R265/1-120 ----------------------------------------------------TTTCGGACGAAAC---TTGCT-CGA-CATTTGCACGTCAGTACGAC--TACTCTTG-------AT-------TGG--C--CAGATGTC--TTTG--GACG-CTG-CAA--CCA-----AG--------CTTGAGTA-TAGAGGCGTTT-ACTT--CGCAC-TATCTGACTT--------------------------------------------------------------
#=GS CNAG_12684/1-120 DE expressed-intronic-boxCDsnoRNA CP003826.1:c988993-988874 Cryptococcus neoformans var. grubii H99 chromosome 7, complete sequence
CNAG_12684/1-120 ----------------------------------------------------TTTCGGACGAAAC---TTGCT-CGA-CATTTGCACGTCAGTACGAC--TACTCTTG-------AA-------TGG--C--CAGATGTC--TTCG--GACG-CTG-CAA--CCG-----GG--------CTTGAGTA-TAGAGGCGTTT-ACTT--CGCAT-TATCTGACTT--------------------------------------------------------------
#=GS WM276/1-120 DE CP000291.1:c911276-911157 Cryptococcus gattii WM276 chromosome F, complete sequence
WM276/1-120 ----------------------------------------------------TTTCGGACGAAAC---TTGCT-CGA-CATTTGCACGTCAGTACGAC--TACTCTTG-------AT-------TGG--C--CAGATGTC--TTTG--GACG-CTG-CAA--CCA-----AG--------CTTGAGTA-TAGAGGCGTTT-ACTT--CGCAC-TATCTGACTT--------------------------------------------------------------
#=GS KwoMan/1-136 DE ASQF01000004.1:c649365-649230 Kwoniella mangroviensis CBS 8886 cont1.4, whole genome shotgun sequence
KwoMan/1-136 ---------------------------------------------------CACAAGGACGAAAT--TTTGCT-CGA-CATTTGCACGTCAGTACGAC--AACTCTACTT---GCAACAC---TCTT--------CCATC-TACTCT-GATGG----TTCT-GGGA----AG------AAGTAGAGTT-TGAAGGCGTTC-ACTT--CGCAC-TATCTGACTTTATATT--------------------------------------------------------
#=GS KwoShan/1-124 DE NQVO01000012.1:c138648-138525 Kwoniella shandongensis strain CBS 12478 scaffold00012, whole genome shotgun sequence
KwoShan/1-124 ---------------------------------------------------TCTCCGGACGAAAC---TTGCTTCGA-CATTTGCACGTCAGTACGACAT--CTCTCG-------AT-------CTG------CTTCTTT---TC---AAAGAAG-ATCAA-CAG-----GT--------CTTGAG-TATGAAAGCGTTAGACTT--CGCAC-TATCTGATCTCAT-----------------------------------------------------------
#=GS KwoHev/1-146 DE ASQC01000108.1:64814-64959 Kwoniella heveanensis CBS 569 cont2.108, whole genome shotgun sequence
KwoHev/1-146 ---------------------------------------------------ACCCCGGACGAAAC---TTGCT-CGA-CATTTGCACGTCAGTACGACAA-GCTCCA------GCCTGT--CTCCCTTTCTCTTTCGCGC--TCCGT-GCGTAAAAGCGAGAGGGAG---TCT-------TGGGAGTCTTGAAGGCGTTC-ACCT--CGCAC-TACCTGACTTCTTTC---------------------------------------------------------
#=GS KwoDej/1-153 DE ASCJ01000063.1:c23352-23200 Kwoniella dejecticola CBS 10117 cont1.63, whole genome shotgun sequence
KwoDej/1-153 ---------------------------------------------------TATCCGGACGAAAC---TTGCT-AGA-CATTTGCACGTCAGTACGAC-AAGTTC--------TTTCC------CTCTCTCGTTCTTTCT---TC---GGAGTGGA-CGAGGGAG-----TT-----------GAGCTTTGAAGGCGTTC-ACTT--CGCACTATCTGATCTTACCTTCGTTCATGCTTTATCATTCTGA-----------------------------------
#=GS KwoBes/1-165 DE ASCK01000001.1:c654498-654334 Kwoniella bestiolae CBS 10118 cont1.1, whole genome shotgun sequence
KwoBes/1-165 ---------------------------------------------------CACAAGGACGAAAC---TTGCT-CGA-CATTTGCACGTCAGTACGACGAC-CTCTCC-----TTTC------TCCC---CT--TCCTTC--TCTT--GAGGGA---TC---GGGA----T---------GGAGAG-CTCGAAGGCGTTC-ACTT--CGCACTTTCTGACTCTGTCACTTCTTCGCGCCACTCCTCTCAATCACTTCCAAAGCAA--------------------
#=GS NaeEnc/1-181 DE MCFC01000007.1:c91144-90964 Naematelia encephala strain 68-887.2 BCR39scaffold_7, whole genome shotgun sequence
NaeEnc/1-181 ---------------------------------------------------ATATCGGACGAAAT----TGCT-CGA-CATTTGCACGTCAGTATGACGGGTCTCG-------CTGGGA-------TATCATTTGGCTCT--TCAC--AGAGTTGGATGATA-------GACC---------TGAGACTTGGAAGCGTTC-ACAT--CGCAC-TATCTGACTATCCCATTATTCTCCTCCTTGTCCCCATTTATCGTTTGGGCTGGGGTTTCGTGA---------
#=GS NaeAur/1-174 DE JAKFAO010000010.1:c422498-422325 Naematelia aurantialba strain NX-20 Contig10, whole genome shotgun sequence
NaeAur/1-174 ---------------------------------------------------TCACCGGACGAAAC----TGCT-CGA-CTTTTGCACGTCAGTACGAC---GACCACTC------GA-------CTGCTTTTGGCTCGGC---TC---GCCGA-CCGAATGCAG----------------GAGGGGC-TCGAAGGCGTTC-ACTT--CGCAC-TATCTGACTCTTTCCTGCTCTGTCACTCTCGCGGTTACCTATCTGGCTAGTTGTACGGGGAA----------
#=GS TreTag/1-142 DE CAJHEQ010000205.1:20845-20986 MAG: Tremellales sp. Tagirdzhanova-0007 genome assembly, contig: TREM_205, whole genome shotgun sequence
TreTag/1-142 ---------------------------------------------------ACCAAGGACGATAT---TTGCT-CGA-CATTTGCACGTCAGGACGACA--GCTTGC----CTGCATGTTTC-TCCGT-CGA-GCC-GTT---CC---AACCGGT---CA-ACGGA-TGACTCC-------GCGAGC--TGAAGGCGTTC-ACTTTGCGCATGT-TCTGATACCTAGCCG-------------------------------------------------------
#=GS TreFuc/1-163 DE LBGW01002244.1:71858-72020 Tremella fuciformis strain tr26 contig2244, whole genome shotgun sequence
TreFuc/1-163 -------------------------------------------------GACTAGCGGATGAATT----AGCG-CGA-CATTTGCACGTCAGGACGACG--TCCCTC-------GTC-------------------CGCT-CACTC--AGCG------------------TTG--------GAGGGA--CGGAGGCGTTC-ATCTTGCTCAT---TCTGACTCGCCTACCTCCCAACACATCCAAC----GGCACGAGGCCCTCGAGCTGACTTACAGATGAGAC
#=GS CryFlo/1-142 DE RRZH01000006.1:c505736-505595 Cryptococcus floricola strain DSM 27421 chromosome 6, whole genome shotgun sequence
CryFlo/1-142 ---------------------------------------------------TCTCCGGACGAAAC----TGCT-AGA-CATTTGCACGTCAGTACGACT--GCCCGA-------TGC------CCTG--ACT-CCAGAAC--TTTT--GTTCAGG--TTTC-CAGG-----C---------TCGGGT-CCGAAGGCGTTAAACT---CGCAC-TATCTGACTTTGCCCCTTCTTCTGTCGTCG------------------------------------------
#=GS CryAmy/1-142 DE MEKH01000004.1:1067651-1067792 Cryptococcus amylolentus CBS 6273 supercont2.4, whole genome shotgun sequence
CryAmy/1-142 ---------------------------------------------------TCTCCGGACGAAAC----TGCT-AGA-CATTTGCACGTCAGTACGACT--GCCCGA-------TGC------CCTG--ACT-CCAGAAC--TTTT--GTTCAGG--TTTC-CAGG-----C---------TTGGGT-CCGAAGGCGTTAAACT---CGCAC-TATCTGACTTTACCCCTTCTTCTGTCGTCT------------------------------------------
#=GS CryWin/1-161 DE AWGH01000003.1:c435861-435701 Cryptococcus wingfieldii CBS 7118 supercont1.3, whole genome shotgun sequence
CryWin/1-161 ----------------------------------------------------CTCCGGACGAAAC----TGCT-AGA-CATTTGCACGTCAGTACGACT--GCCCGA-------TGC------CCTG--ACT-CCAGAAC--TTTT--GTTCAGG--TTTC-CAGG-----C---------TTGGGT-CCGAAGGCGTTAAACT---CGCAC-TATCTGACTTTACCCC-TTCTTCTGTCGTCGTG-TTCATCGAACAGGACAAT--------------------
#=GS PapTer/1-147 DE JAHXHD010000525.1:c12703-12557 Papiliotrema terrestris strain LS28 scaffold-524, whole genome shotgun sequence
PapTer/1-147 ---------------------------------------------------TCCCCGGACGAAAC---TTGCTTCGA-CATTTGCACGTCAGGACGACG--GCTTC--------ATCA----------GTGCCCGTCTCT---TC---GGAGATGGGC-C-----------------------GAGGT-CGAAAGCGTACAACT---CGCAC-TATCTGACCTTACAACTC--------------------GGCTTCTTCTACTTCTCTGATCTGCC--------
#=GS PapLau/1-156 DE JAAZPX010000035.1:59878-60033 Papiliotrema laurentii strain IF7SW-F4 scaffold64_cov208, whole genome shotgun sequence
PapLau/1-156 ---------------------------------------------------CCTCCGGACGAAAC---TTGCTTCGA-CATTTGCACGTCAGGACGACG-GGCTCCC-------ACCA-----------------TCTCT---CC---GGAGA----------------------------GGGAGTT-CGAAGGCGTAC-ACCT--CGCAC-TCTCTGACCTCTTCTTCTCACTTCTCGACATGCCAAGTCACTCGAGACGCCGAGCTGATACC----------
#=GS CryFla/1-152 DE CAUG01000242.1:142828-142979 Cryptococcus flavescens NRRL Y-50378 WGS project CAUG00000000 data, contig NODE_338_length_195656_cov_46_022861, whole genome shotgun sequence
CryFla/1-152 ----------------------------------------------------CCCCGGACGAAAC---TTGCTTCGA-CATTTGCACGTCAGGACGACG--GCTTCATC-----AGCGC-------------CCGTCTCC---TC---GGAGATGG------------------------GACGAGGT-CGAAAGCGTACAACT---CGCAC-TATCTGACTTTACC--CTTCGCTTCTTAGATTTGTACAGGCGGACGAGACAG--------------------
#=GS CrySki/1-162 DE BCHT01000002.1:c1055180-1055019 Cryptococcus skinneri DNA, scaffold: scaffold_1, strain: JCM 9039, whole genome shotgun sequence
CrySki/1-162 ---------------------------------------------------CCATCGGACGAAAC---TTGCATCGA-CTTTTGCACGTCAGTACGAA---ACCCCTGT------T-----------CACCTCGTCTGTC---TC---GACGGAC--GGTG---------TG-------ACTTGGGT--TGAATGCGTTC-ATCTT-CGCAC-TATCTGATTCTACTATCGTCGCTCCATACT-CGATGACCTGCGTGGTTCGTTGG------------------
#=GS CryGC4/1-169 DE JALPCA010000076.1:c9823-9655 Cryptococcus sp. GC_Crypt_4 iso00_46_106, whole genome shotgun sequence
CryGC4/1-169 -----------------------------------------------------TCCGGACGAAAT----TGCT-AGA-CATTTGCACGTCAGGACGACA--ATTTCATT-----CTTCCTT----------TCTTTGCCT--GTAT--AGGTA-GGA-----------TTAATA------GATGTTAT-TGGAAGTATAAAACT---CGCAT-TA-CTGATCACCTC--GCTCTTCTTCTGTGTTGGATATCGGGTAGA------TGCTGATGACTATAGT----
#=GS CryGC6/1-163 DE JALPBY010000068.1:19058-19220 Cryptococcus sp. GC_Crypt_6 iso00_61_68, whole genome shotgun sequence
CryGC6/1-163 ---------------------------------------------------CACTCGGACGAAAC---TTGCTTCGA-CATTTGCACGTCAGTACGACGGCTCGTTGGACCGA-----------------TCTGGTGTCA---TT---TGAC-CTGGA------------AC---TCGGTCTGCGGGTCTATAAGCGTTAAACAC--CGCAC-TATCTGATCATCCTCTCCAATCCTATCTCATCTGGGTTATAGTGGAG-------------------------
#=GS BulAlb/1-167 DE BCIX01000002.1:2420208-2420374 Bulleromyces albus DNA, scaffold: scaffold_1, strain: JCM 2954, whole genome shotgun sequence
BulAlb/1-167 ----------------------------------------------------CTCCGGAAGAAAC---TTGCTTCGACAATTTGCACGTCAGTATGACAACTTTCAGGGGA---------------------CCAGTCTC--ATC---GAGACGGGC----------TTCCTTG---TCTTT-------TGAAAGCGTACAACCT--CGCACATATCTGATCATCTTC-ATTCTCACTCCGATTTGCAAACAGT-GAGG-------GCTGGAAGTTAAC------
#=GS VanFra/1-162 DE BEDY01000001.1:3471749-3471910 Vanrija fragicola DNA, scaffold: scaffold_1, strain: JCM 1530, whole genome shotgun sequence
VanFra/1-162 ---------------------------------------------------CCTCCGGACGATAC----TGCT-CGA-CTTTTGCACGTCAGTACGATG-GCCTCACGTT---AGCTGGAA---GTGCGCAGTCCGTCGC--CTCG--GC-ACGG-CTGTTCAC------CAA-----GGTGTGAGAC-TGCAAGCGTTTAATT---CGCAT-T-TCTGAACCCTTTGCTTTCCTCCTTTCTTTCTTGA------------------------------------
#=GS TriInk/1-166 DE JXYM01000006.1:810134-810299 Trichosporon inkin strain JCM 9195 scaffold_0006, whole genome shotgun sequence
TriInk/1-166 ----------------------------------------------TCCTTTTTCGTGATGAAAC------TT-CGA-CATTTGCACGTCAGTACGACG-ATCCCGCG----TTCCCCTGA------------GGCGGCC--TTT---GGCTGCT--------------GATGG------TGCGGGGT-TGAAGGCGTTAAATTT--CGCAT-TG-CTGACCTCCCTCACCATGTCATGGCGTTGATT---GGAGCTCGG-----AGCTGACGTG----------
#=GS TriCor/1-159 DE JXYL01000022.1:626665-626823 Trichosporon coremiiforme strain JCM 2938 scaffold_0022, whole genome shotgun sequence
TriCor/1-159 -----------------------------------------------------ACAGGATGAAAAC-----TTTCGA-CATTTGCACGTCAGTACGACG-GTCCTGCG-----TCGGC----------TGGCGGCTGGCT---TC---GGTCA-CCGCCA----------AC--------TGCAGGGC-TGAAGGCGTTAAACTT--CGCAT-TG-CTGAACCCCTCTACTGCAAGCTTAATTACGA----GGAGC-CGG---TTAGCTGAC-------------
#=GS TriASa/1-162 DE JAMYHT010000004.1:782166-782327 Trichosporon asahii strain F6008 ctg_4, whole genome shotgun sequence
TriASa/1-162 --------------------------------------------------TCAACAGGATGAAAAC-----TTTCGA-CATTTGCACGTCAGTACGACA-GCCCTGCG-----TCGGC----------TGGCGGTCGGCT---TC---GGTCG-CTGCCA----------GC--------TGCAGG-C-TGAAGGCGTTAAACCT--CGCAT-TG-CTGAACCCCTCCACAACAAGCAGTCTTTGAT-----GAGCTTG----TTAGCTGACAC-----------
#=GS TriOvo/1-166 DE WEIQ01000028.1:19170-19335 Trichosporon ovoides strain 2NF903A scaffold28-size599024, whole genome shotgun sequence
TriOvo/1-166 ---------------------------------------------------TTCTATGATGAAAC------CT-CGA-CATTTGCACGTCAGTACGACT-ACCCCGCG----TTCGCCTGA------------AGCGGCC--TCC---GGCTGCT-------------GACGGT------TGCGGGGT-CGAAGGCGTTAAATCT--CGCAT-TG-CTGACTTTCTCTCCCATGTCATGATCTTAA------CGATGCT---CTGAGCTGACAGACAGTC-----
Annot/1-47 --------RTGATGA-----------CTGA-------------------------RTGATGA----------------CUAAACGUGCAGUC-CTGA-------------------------------------------------------------------------------------------RTGATGA---------------------CTGA-----------------------------------------------------------------
#=GS SacCer-snR72/1-98 DE 25S:A876 Saccharomyces_cerevisiae snR72 http://snoopy.med.miyazaki-u.ac.jp/snorna_db.cgi?mode=sno_info&id=Saccharomyces_cerevisiae300017
SacCer-snR72/1-98 ---GTGATGTGATGACAACTTC----TTGAGCTATATATTTTCTTGAGAACATCAATGAAGAAAACGTCTCATCAAATGATTTGCACGTCAGTCTGATCACAAGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS OrySat-snoZ122/1-89 DE Oryza_sativa snoZ122 http://snoopy.med.miyazaki-u.ac.jp/snorna_db.cgi?mode=sno_info&id=Oryza_sativa300087
OrySat-snoZ122/1-89 TTTGGGAAATGATGAACAATTCATCTCAGATATCCTTTATGGATTTATTTTCAGAATGATGAA---------------AATTTGCACGTCAGTCTGATCCCAAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GC SS -----------------------------------------------------------------------------------------------------((((((((.........---((((.......((((((........))))))........))))...........-))))))))---------------------------------------------------------------------------------------------------
//
Image source context-snR72:
# STOCKHOLM 1.0
#=GF RW van Nues, July 2023
#=GF https://coalispr.codeberg.page/paper
Annot/1-13 ------------------------------------------------------------------------------------GTgtGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGA--------------YAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS transcript/1-717 DE AE017346.1:436372-437443 Cryptococcus neoformans var. neoformans JEC21 chromosome 6 sequence
transcript/1-717 -TTTTCCATTTCTCTTTTGTCTCTTTTCTTACTTGTTGATCCTTCGATTTTGAGCTCCCCATATCAACATCTATATTTTCA--GGTAAGTCCC----------------------GTGTCGATTTAAGCTCTTTCCTATCTTTTCGGACGAAATTTGC-TCGACATTTGCACGTCAGTACGACTACTCTTGAATGGCCAGATGTCTTCGGACGCTGCAA--CCAGGCTTGAGTATAGAGGCGTTT-ACTTCGCATCATCTGA-TTTTCACAGTCTTCTGCACTCGTACAATGCACGAGAAG----------------AAGCTCG-TGCTGAC-TTTTCCTCGTTATAGGTATTCTTTTCCGGCCATGCAAGACTCGATTATATCCGTTTCATCTCCTATGGGTCACATTCTATGTGGACTTTAAGGCGCCTCACCCTTTCTAAGT----------------------------------------------------------------CTGTTCCTTTCAATTCGATAATCGCTTTCAGTCCCCCGTCACAGCT--TGGTTCAACCTTTCGTTAACCCGTGCTGA--TGTCGGGGTT--AT---GGCCTTTATGGTC---CAAAGCGAAGAGTGAA-GTCTT----------GACTGGGCATGTCCTCGTTCGTTTT---------ACTTCCACTGAATGTGGGACTAATCAGTCTTGTCGACACCTCTTGCTATGTA--TGCATCTACTCTTATTTCGTGCTCAAATTACCTTCTATTTATTGTCAAAACGCGGGGATGATGCAACAACAATTTGTCAGTTTGAATGTACGACAG---------TACTCTAAAAGCATGTTGTTTCATCA
#=GS 9-centromere/1-1 DE AE017349.1:c335962-335609 Cryptococcus neoformans var. neoformans JEC21 chromosome 9 sequence
9-centromere/1-1 -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A
#=GS exonic-HACAsnoRNA-CNAG_12684/1-168 DE 7: [988,529 - 988,697] (+168)
exonic-HACAsnoRNA-CNAG_12684/1-168 -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCGCTTTCAGTCCCCCGTCACAGCT--TGGTTCAACCTTTTGTTAACCCGTGCTGA--TGTCGGGGTT--AT---GGCCTTTACGGTC---CAAAGCGAAGAGTGAA-GTCTT----------GACTGGGCATGTCCTCGTTCGTTTC---------ACTTCCACTGAATGTAGGACTAATCAGTCTTGTCGACATTTC-----------------------------------------------------------------------------------------------------------------------------------------------
#=GS HACAsnoRNA-259nt-in-CNF01490/1-257 DE ncrna 6:436788:437045:1
HACAsnoRNA-259nt-in-CNF01490/1-257 -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCGCTTTCAGTCCCCCGTCACAGCT--TGGTTCAACCTTTCGTTAACCCGTGCTGA--TGTCGGGGTT--AT---GGCCTTTATGGTC---CAAAGCGAAGAGTGAA-GTCTT----------GACTGGGCATGTCCTCGTTCGTTTT---------ACTTCCACTGAATGTGGGACTAATCAGTCTTGTCGACACCTCTTGCTATGTA--TGCATCTACTCTTATTTCGTGCTCAAATTACCTTCTATTTATTGTCAAAACGCGGGGATGATGCAACAACAATTTGTCA----------------------------------------------------
#=GS CNAG_12684/1-706 DE CP003826.1:c989109-988404 Cryptococcus neoformans var. grubii H99 chromosome 7, complete sequence
CNAG_12684/1-706 -TTTTCCATTTCTCCTTTGTATCTTTCCTTACTTATTGATCCTTCGACTTTGAGCTCCCATATCAACATGCTGTATTTTTA--GGTAAGTCCC----------------------ATGTCTATCTAAGCTCTTGTCTATCTTTTCGGACGAAACTTGC-TCGACATTTGCACGTCAGTACGACTACTCTTGAATGGCCAGATGTCTTCGGACGCTGCAA--CCGGGCTTGAGTATAGAGGCGTTT-ACTTCGCATTATCTGACTTCCTACAGCCTTCTGCACTCGTATAATGCACGAGAAG----------------TAGCACAATGCTGAC-----TTACCTTACAGTTATCCATTTCTGGCCATGCAAGGCTTGACCATATTCGTTTCATCTCGTATGGTTCAC-TCCATGTGGGCTTTACGGCGCCTCA-CCCTTTTACGT-----------------------------------------------------------------CTGTTCCTTTCAATTTCATAATCGCTTTCAGTCCCCCGTCACAGCT--TGGTTCAACCTTTTGTTAACCCGTGCTGA--TGTCGGGGTT--AT---GGCCTTTACGGTC---CAAAGCGAAGAGTGAA-GTCTT----------GACTGGGCATGTCCTCGTTCGTTTC---------ACTTCCACTGAATGTAGGACTAATCAGTCTTGTCGACATTTCTTGCTATGTA--TACATATATTCCTAATTCACACTCAAATTACATTCCGTTTATTGTTAA------GGGATGATGCAACAACAATCTGTCGGTTTGATTGTATAACA---------TTACTCCAAAAGCATGTTGTTCCATCA
#=GS R265/1-716 DE CP025763.1:c917164-916445 Cryptococcus gattii VGII R265 chromosome 5, complete sequence
R265/1-716 GGTTTCCATTTTCCTTTTCTCTTCTTTCTTATTCATTGATCCTCCGACTCCGAGCTCACATCTCAGCGTACTGTATCTTTA--GGTAAGTCCC----------------------ATTTCTATTCAAGCTCTTGTCTATTTTTTCGGACGAAACTTGC-TCGACATTTGCACGTCAGTACGACTACTCTTGATTGGCCAGATGTCTTTGGACGCTGCAA--CCAAGCTTGAGTATAGAGGCGTTT-ACTTCGCACTATCTGACTTTCTACAGCCTTCTGCACTCGCATGATGCACGAGAAG----------------GAGCTCGATGCTGACA---TTTCCGTTACAGTT---TTTTTCCGGCCATGCAAGGCATAATCATATCCATTTCATTTCGCCTGTTTACACCCCATGTGG-CC-TAAGGTGCCTCG-CTCTTTTTGGTTGC--------------------------------------------------------------CTGTTCGTTTCAATGCCATAATCGCTTTCAGTCCCCCGTCACAGCT--TGGTTTAACCTTTTGTTAGCCTGTGCTGA--TGTCGGGGTT--AT---GGCCTTCAAGGTC---CAAAGCGAAGAGTGAA-GTCTT----------GACTGGGCATGTCCTCGTTCGTATT---------ACTTCCACTGAATGTGGGACTAATCAGTCTTGTCGACATATCTTGTTGTGTA--TGCATCCATTCTTGATGCATGCTCAAATTAAATTACATTTATTGTAA---CGA-CGCACGATGCAACAAC---TTGTTCGCTTGGTTATTTATATGACAGTGGTGTACTCTAAAAGCATGTTGTTCCATCT
#=GS WM276/1-721 DE CP000291.1:c911395-910671 Cryptococcus gattii WM276 chromosome F, complete sequence
WM276/1-721 GGTTTCCATTTTCCATTTCTCTTCTTTCTTATTCACTGATCCTCCGACTCCAAGCTCACATCTCAGCGTGTTGTATCTTTATAGGTAAGTCCC----------------------ACTTCTATTCAAGCTCTTGTCTATTTTTTCGGACGAAACTTGC-TCGACATTTGCACGTCAGTACGACTACTCTTGATTGGCCAGATGTCTTTGGACGCTGCAA--CCAAGCTTGAGTATAGAGGCGTTT-ACTTCGCACTATCTGACTTTTTACAGCCTTCTGCACTCGCATGACGCACGAGAAT----------------AAGCTCGATGCTGACATTTTTCCCGTAACAGTT---TTTTCCCGGCCATGCAAGGCATAATCATATCCATTTCATTTCGCCTGTTCACGCTCCGTGTGG-TC-TAAGGTGCCTCGGCTCTTTTTGGTTGC--------------------------------------------------------------CTGTTCGTTTCAATGCCATAGTCGCTTTCAGTCCCCCGTCACAGCT--TGGTTTAACCTTTTGTTAGCCTGTGCTGA--TGTCGGGGTT--AT---GGCCTTCAAGGTC---CAAAGCGAAGAGTGAA-GTCTT----------GACTGGGCATGTCCTCGTTCGTATT---------ACTTCCACTGAATGTGGGACTAATCAGTCTTGTCGACATATCTTATTGTGTATATGCATTTACTCTTGATGTATGCCTAAATTACATTACATTTATTGTAA---CGA-CGCACGATGCAACAAC---TTGTTCGCTTGGTTATATATATGAAAGTG---TACCTTAAAAGCGTGTTGTTCCATCT
#=GS snR72/1-120 DE intronic_boxCDsnoRNA-122nt-in-CNF01490-as-CNAG_12684 ncrna 6:436487:436607:1
snR72/1-120 ---------------------------------------------------------------------------------------------------------------------------------------------TTTCGGACGAAATTTGC-TCGACATTTGCACGTCAGTACGACTACTCTTGAATGGCCAGATGTCTTCGGACGCTGCAA--CCAGGCTTGAGTATAGAGGCGTTT-ACTTCGCATCATCTGATTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
#=GS CryFlo/1-363 DE RRZH01000006.1:c505612-505250 Cryptococcus floricola strain DSM 27421 chromosome 6, whole genome shotgun sequence
CryFlo/1-363 -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCCTTCTTCTGTCGTCGTGTTTATCGAAC----------------AGGACAATAGCTGATGCTT-----GAAACAGGTGTAGTGATTGGTCATGCAGTAGACCTTGATATCTTTCCACTTTTCCATCTCTCTACCATTCACAACCCCCCATCCCCCTCATATACC--------------------------------------------------------------------------------------------CACGCTTTCAGTCCCCCTTCGTTGCT--CGGTTCGACCTTTAGTCAGCCAGTGCTA--CCGTCGGGGTTTTATAAGACCACTTTTGGTTTTGCAAAGCGAAGAAAAAA-GTCA----------AAACTGGGCATGTCCTCGTTCGTTTAT---------TCTCCACTGAATGTGGGACTAATCAGTTTTGTCGACATTACTATATAATACCACACCTTT--TTGCCATGAAGAATGAATCACAA---------------------------------------------------------------------------------------------------
#=GS CryWin/1-609 DE AWGH01000003.1:c435978-435370 Cryptococcus wingfieldii CBS 7118 supercont1.3, whole genome shotgun sequence
CryWin/1-609 -----GCAGCCCAAAAGTTTGGAACTCCATCTTGCTTTTGCAACTCCATCTACTATCGTCTTCTCGTCAACTTTCAGTGTTTAGGTGAGTCAACCA-------------------TTCCATTCCGCCCTCCATGCGCCTTTCTCCGGACGAAA-CTGC-TAGACATTTGCACGTCAGTACGACTGCCCGATGCCCTGACTCCAGAACTTTTGTTCAGGTTTCCAGGCTTGGGTCCGAAGGCGTTAAACT-CGCACTATCTGACTTTA----CCCCTTCTTCTGTCGTCGTGTTCATCGAAC----------------AGGACAATAGCTGATGCTT-----GAAACAGTTGTAGTGATTGGTCATGCAGTAGACCTTGATATCTTCCCACTTTTCCATCTCTCTTCTTTCCACAACCCCCCATCCCCCTCATATGCC--------------------------------------------------------------------------------------------CACGCTTTCAGTCCCCCTTCATTGCT--CGGTTCGACCTTTAGTCAGCCAGTGCTA--CCGTCGGGGTTTTATAAGACCACTTTTGGTCTTGCAAAGCGAAGAAAAAA-GTCA----------AAACTGGGCATGTCCTCGTTCGTTTAT---------TCTCCACTGAATGTGGGACTAATCAGTTTTGTCGACATTATTATATAATACCACACACCTTTCTGCCATAAAGAATGAATCAATGGTTC-----------------------------------------------------------------------------------------------
#=GS KwoSha/1-650 DE NQVO01000012.1:c138764-138115 Kwoniella shandongensis strain CBS 12478 scaffold00012, whole genome shotgun sequence
KwoSha/1-650 -----------------TACATCTTCATCATCTTGACTTGTCCTCTATCCACTCAAGAACGATGGCCTGACCTTTGTAGAAAATGTGAGTTGACACGCTCCCTCTTCT-------TTCCACACACCCTCTCGTCAATCGCTCTCCGGACGAAACTTGCTTCGACATTTGCACGTCAGTACGACATCTCTCGATCTGCTTCTTTTCAAAGAAGATCAACA----GGTCTTGAGTATGAAAGCGTTAGACTTCGCACTATCTGATCTCATT-CGCTTCTTCTCGTCCTATCATTGCTTCGAATCTGATTGCTCGGAAAGGAAGAGAATGCTGATGATT-----CGGACAGACAGTTTTTCTAGTTTTTATTCCTTATGCAACGATAACCCTCAATCTACCAATCGCGTTTCCTCTCCTTCTGTATTGTAAAAACACCTTCCTTCCCTCCCTCCCTCCCTCCCTCCCTCACAAA----------------------------------------------------------TACGCTTTCAGTCCCCCATCTTGGCT--CGGTACGACCTTTTGTCAGCCAGTGCTA--CGAATGGGGTTTTATA-G-TACTTTTCAGTACTTTAAAGCGAAGATAGAA-GACA----------AGACTGGGCATGTCCTCGTTCGTCTTTCTGAATTTACCCCCACTGAATGTGGGACTAATCAGTCTTGTCGACATTACTTCCTCTTGTATCATATACATTACTTGACC-----------------------------------------------------------------------------------------------------------------
#=GS TreTag/1-639 DE CAJHEQ010000205.1:20130-21383 MAG: Tremellales sp. Tagirdzhanova-0007 genome assembly, contig: TREM_205, whole genome shotgun sequence
TreTag/1-639 ---------------------------------CTCTCTCTCGCTCGATGTCTTGTCCAATCCGCGTAGCTTCCCGGTCCATAGGTGAGCTCCAAGTCACTTGAACCCCTGAACATACAACCCTACTCGATTCAC-------CAAGGACGATATTTGCT-CGACATTTGCACGTCAGGACGACAGCTTGCCTGCATGTTTCTCCGTCGAGCCGTTCCAA---------CCGGTCAACGGATG----ACTCCGCG--AGCTGAAGGCGTTCACTTTGCGCA-------------------------------------------TGTTCTGATACC----------TAGCCGGATTTAATACGTGATCTTTGACTACTGAAGACTCTCCCGTCGTGAATCTTCACATCGTCGGAAACGCTGATCGCCTCTCCAACAGTTGGCGACATTGATGCATTGCCTCATCCTCTCCGAACCAACCTTTTCGTGGTTCGTTCCAACGCTCACATCTTCGAGCGTCCAAGCGTAATGCCCCGCTTCCAGTCCCTCGTCCCAGCT----GTGTGACCTTTTGTCACGCTGTGCTGA-GTTTCGAGGATAAATTGG---CTTGATAGTCA-ATGAAGCGCAGAGAGAATGACTC----------GACTGGGCATGTCCTGGGCCTTTTT----------AAACCCACCGGTTTGGGACTAATCAGTCTTGTCGACACGATGTCTTGCTATGCATATGCTTTCCAGCCGACGGCAACCTGGTACAAAGT-----------------------------------------------------------------------------------------------
#=GS CrySki/1-632 DE BCHT01000001.1:238668-239299 Cryptococcus skinneri DNA, scaffold: scaffold_0, strain: JCM 9039, whole genome shotgun sequence
CrySki/1-632 ------------------------------TTGTCGTCGCACTTGCATAGATTATCGTCATCACCTTATGGATTCGGCAATGCAGTGAGTACTCTCTCTCGCGATAAGGCATGGGTCCTTTCCCCTGTTACCCTACTGTCCTCCCGG---ATTCGTGCAACGAGTCCTGCACGTCTGATCTGAAGCTTCCTCCTGTTAATCTGTAACGATATAGAGGTTAA-------TGAGCTGACGACGAAGTCATCCTGCAGTTCATGTTTAGGCTAAGGCAGGCGACGATCCGTCGCGGTCGACGTGGTTGTCTTCTCAGACGCA---TTGGCCAGAGCCGGTCTATTACCTCTCGTCGACTGGGGTTCGGAGCTTACGAGCACGGGCTATCGTGCTATCTTGAT-CGTTACTTATCCATCTTGACACTATCATCCCATCCATTTACCCATGAGCTTTCAAACCTCAACAC-----------------------------------------------------------------CCGCTTTCAGTCCCCCGTCCCAGCTCCCGGTAAGACCTTTTGTCGAACCATGCTGGCCTGTCGGGGTT----ATGATCATTATCGGT---CAAAAGCGTAGATAGA-TCTCAAGGGACGTCTAGACTGGGCATGTCTCTTCTTGTTAT--------ATGCTCCACTTAGCGAGGGACTAATCAGTCTGGTCGACATCTGAGCTGTTTATGTAAATGCGGATCGCTCT-------------------------------------------------------------------------------------------------------------------
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