snRcnf04440¶
snRcnf04400_boxCDsnoRNA-in-CNF04440
Within 5’UTR (CNF04440) or 1st intron (CNAG_06573) for an uncharacterized protein with similarity to proteins involved in DNA maintenance
Predicted target in 18S rRNA ?: gctCcagtag
Homologous position not known to be methylated in plant, human or yeast.
>AE017346.1:c1291294-1291208 Cryptococcus neoformans var. neoformans JEC21 chromosome 6 sequence TTCTCTGATGATACTGCTGGGGCTCCGAGGCCCGTGACGCCATCCCAGCCACATGCTAATCCGGCTCCAC GCCGTACATATCTGACT
Other putative targets in Tremellomycetes are shown below, found by searching for gyyYyagyagtg in C. deneoformans.
Targets, although not highly expressed, that would be conserved among Cryptococcus species, are in CNG03635, CNAG_07718, CNH03220, CNAG_05312, or, CNC05030, CNAG_02890 a.o.
More widely conserved base-pairing of the guide was found for CNK01680, CNAG_02680, while inteaction with the 5’SS in CNH01830, CNAG_05532 or CND01470, CNAG_01017 could interfere with splicing,
CNA02460, CNAG_00257 (SSLS motif)¶ CNB04900, CNAG_04007 (GFSS motif)¶ CNC05030, CNAG_02890 (GSSS motif)¶ 5’SS CND01470, CNAG_01017¶ CNG03635, CNAG_07718 (APAV motif)¶ CNG04675, CNAG_03097 (ALVV motif)¶ CNH03220, CNAG_05312 (SSSS motif)¶ intron CNH02290, CNAG_05584¶ 5’SS CNH01830, CNAG_05532¶ C. neoformans Tremellomycetes targeted segments
Image source snRcnf04440:
# STOCKHOLM 1.0
#=GF RW van Nues, July 2023
#=GF https://coalispr.codeberg.page/paper
Annot/1-32 -----RTGATGA--GAUGACCUCG-CTGA--------------------------------RTGATGA-------------------------------------------------------------------CTGA---------------
#=GS snRcnf04440/1-87 DE intronic-boxCDsnoRNA-in-CNF04440 ncrna 6:1291207:1291295:-1
snRcnf04440/1-87 -TTCTCTGATGATACTGCTGGGGCTCCGAGG-----------CC--------------CGTGACGCC---ATCCCAGCCACATGCTAATC-CGGCT--CC-A-CGCCGT--------------------AC--ATATCTGACT-----------
#=GS in-CNAG_06573/1-93 DE 7:158390-158483:1 (+93) CP003826.1:158391-158483 Cryptococcus neoformans var. grubii H99 chromosome 7, complete sequence
in-CNAG_06573/1-93 TTCTCCTGATGATACTGCTGGGGCACCGAT-----------TCCC--------------ATGACGCC---ATACCAGCCACATGCTAATCGCGGCTATCC-A-AGTCGT--------------------ACAAATATCTGAAT-----------
#=GS CryFlo/1-101 DE RRZH01000011.1:1094867-1094978 Cryptococcus floricola strain DSM 27421 chromosome 10, whole genome shotgun sequence
CryFlo/1-101 TCTCTATGATGATATTGCTGGGGCACCGAC-----------TCCC--------------ATGACGCCA--ATACCAGCT---TGCTAATCGCGGTC-TCC-A-AGCCGT--------------------ACCCATATCTGAATCTACTCTCTCC
#=GS CryAmy/1-92 DE MEKH01000010.1:986082-986173 Cryptococcus amylolentus CBS 6273 supercont2.10, whole genome shotgun sequence
CryAmy/1-92 TCTCTATGATGATATTGCTGGGGCACCGAC-----------TCCC--------------ATGACGCCA--ATACCAGCT---TGCTAATCGCGGTC-TCC-A-AGCCGT--------------------ACCCATATCTGAATCT---------
#=GS CryWin/1-101 DE AWGH01000019.1:c144843-144732 Cryptococcus wingfieldii CBS 7118 supercont1.19, whole genome shotgun sequence
CryWin/1-101 TCTCTATGATGATATTGCTGGGGCACCGAC-----------TCCC--------------ATGACGCCA--ATACCAGCT---TGCTAATCGCGGTC-TCC-A-AGCCGT--------------------ACCCATATCTGAATCTACTCTCTCC
#=GS KwoMan/1-106 DE ASQF01000009.1:46618-46723 Kwoniella mangroviensis CBS 8886 cont1.9, whole genome shotgun sequence
KwoMan/1-106 -TTTCCTGATGACACTGCTGGGGCACCGAT---------CTCAACCC------------ATGACGCCA--ATACCAGCTATATGCTAATCACGGT-GTCC-ATCACCGTT------------------CTCAATTACCTGACAAATCCCC----
#=GS KwoBes/1-98 DE ASCK01000014.1:178937-179034 Kwoniella bestiolae CBS 10118 cont1.14, whole genome shotgun sequence
KwoBes/1-98 -TTCTCTGATGACATTGCTGGGGCACCGATG----------ATCAA------------CATGACGCCA--ATACCAGCTATATGCTAATCACGGT-GTCATATCACCAT--------------------CAATTTACCTGATAA----------
#=GS KwoDej/1-96 DE ASCJ01000015.1:202747-202842 Kwoniella dejecticola CBS 10117 cont1.15, whole genome shotgun sequence
KwoDej/1-96 -CCCTCTGATGACATTGCTGGGGCACCGAT-----------CACC--------------ATGACGCCA--ATACCAGCTACATGCTAATCACGGT-GTTCTCACACCG-------------------AACCAAATACCTGAATC----------
#=GS KwoSha/1-107 DE NQVO01000086.1:c14287-14181 Kwoniella shandongensis strain CBS 12478 scaffold00086, whole genome shotgun sequence
KwoSha/1-107 CCCATTTGATGACATTGCTGGGGCACCGAT-----------CACC--------------ATGACGTCC--ATACCAGCCATATGCTAATCACGGT--CTCTATACGAG------------------ACCGACCCACTCTGATACCTCACCTCTC
#=GS KwoHev/1-126 DE ASQC01000155.1:c62496-62371 Kwoniella heveanensis CBS 569 cont2.155, whole genome shotgun sequence
KwoHev/1-126 TCCTTCTGATGAAATTGCTGGGGCACCGAG-------TCTACTCGACCAC--------CATGACGCCA--ATACCAGCTT-ATGCTAATCACAGT--CTCTCCAAGTCCTTGCGGCATGGAGGGTTATACCAAATACCTGAACAAT--------
#=GS TreFuc/1-113 DE LBGW01001040.1:6080-6192 Tremella fuciformis strain tr26 contig1040, whole genome shotgun sequence
TreFuc/1-113 GCGACATGATGACATTGCTGGGGTTCCGACTTTCCCC-TGGGCCAGGCC--GAGAGGGGAGGATGTGGTCGTGCCAGCT----GCTAATCTC-----CCATATTTGGGCT-----------------------TTGTCTGATCTTCCC------
#=GS TreFuc/1-117 DE BRDD01000076.1:c161395-161274 Tremella fuciformis NBRC 9317 DNA, KCNB80TF.76, whole genome shotgun sequence
TreFuc/1-117 -GAACATGATGACATTGCTGGGGTTCCGACCTCCCCCCCCATGTGTATGGGGAGA----GGGATGCGGTCGTGCCAGCT----GCTAATCTC-----CCATTGTATGGGC-----------------------TTGTCTGATCTTTTCGACGCT
#=GS TreYok/1-112 DE BRDC01000025.1:c8488-8377 Tremella yokohamensis NBRC 100148 DNA, KCNB35TY.25, whole genome shotgun sequence
TreYok/1-112 -GAACATGATGACATTGCTGGGGTTCCGACCTCCCCCC---TGTGTA-GGGGAGA----GGGATGTGGTCGTGCCAGCT----GCTAATCTC-----CCATTCTATGGGC-----------------------TTGTCTGATCTTGCCGACGC-
//
Image source CNF04440 BLAST:
# STOCKHOLM 1.0
#=GF RW van Nues, July 2023
#=GF https://coalispr.codeberg.page/paper
NaeEnc_Topoisomerase_II-associated_protein-PAT1/1-1034 MSSDYEEPDDDLFGQ-LDANALDQLETVAYAKHSAASQAPAPTASKSTHHQLARPKNAV---AGPSRLGMGRKADPRPLNVRPGQTGSGFGWEFGGKRDADLERHIGNVEKRSMYWGGNAHNQGYP---GAVMTDTGGYAVNTDLDP-----EG-------EVVDSLAATNMVL--------PRS------------------TQAAAQARRQAIFSASQ---VPSG------PPI-------------------NRPTPIRQPAPVQLQA----------TSRFPARNLSRSVSAGSHP----------------------LPQHG-------GQNGRFSPNLPAVASQTETPPASQGSIARRTALELEEERKRREAVEAELQALRKQVQDVSRRTPPV-----EIVDEGDLVQRLKTMEQELWVARGEAEALRRNQRRDKQTQEEGENRYRAKLAEMEAALHQKEIEANRRIESVKTQAVFQNHAVLSSTTKARISNAM--AGSQTPARGLQSSPRKNGGS--------QWEDMS--AKAKGKMR----------APPPPPPAFGKLSNAFVETPTITGRVKRQRTEGLS---------------PSPIKAITKASE----------------------PPSGVDI-----DEPMQEAVPEVGNDGDVFD----------ALPGEASMQIED-----------DEEAMDVRSLLLYHLFHHNSLSALQTALDPESITQPTIYRIFNHVPDTGQV-------------------------------RAAHSQACGDILRMCGDTDLSV-----EMMYQHLAGSLVKLVEVHMGLL------WIPASCSFAALETLANVLSLLARTATLFPSFVPILCNIADGHITALVSDLVNKIYATPDGITTFQQKLLEQATE-------AKM---------------------DVDRYDNANLEKSWSQDLAWFIADLATALSWYSDGSPPWQGSQLVDILLCLTCPHLDPKIVKKGVEAIWGISLNRDNFRSALQTSAI--HALKLGDQPLLERISRLLMVPPSGWNDNETHELTMLLIRATQQLSIADQDAVLLIADKSIIPLALVTLIERESKPVWGIEMDHRDPSKSLKMLQALLTLLHHLVYPIALNIAPRLSTSSSQRQRLP----PAYTSANDEPEPDTDDIPIGINLMDRISRPNQPREFAGIPHLFVSALGRLSYADPVVDDDILKAGEKNGDWDLRIIQYMAQDILESVVEGPEGDAVYELYAGEEDAEDGSATGTGMADMG----------MDEGDEVDEDVYAEVAGGEHDDVDMD--------
CNF0440/1-1198 MSDAYDDDD-AFFDDPETLNLLVQVEERALQASQ--AQPKASQLP--ARNTVAADNYGNRPKQ-----LGARRTLPQPVNATSNIRA---QWKPPVP---------------AAAGGSRSRHGEEPPPIDIVVDSTGRYDLAAGS------------ADEAVVTDNRRSKSLALGARLGLGHGRSGSTSSVGGTARKSEGEDGRSTASEERRRAITQA--LSGAEAG-----TKTLSRSNSTSSI-----TARLSHAPAPAPPPPS---------------QPFNTARQLSRSASVGSHAGSQVFGAANQPSPLQGNARLPPIPSSGGGSGSQGGQRQRYGN--V------------------QAEELLKKERERRIALETELARLRAGTASSNTTTTANAQKVTAGDGGDDLEKKIKELQAQMWAAKGEAETIRRAQKEEKDRFKAELERLQQAVAEKEAQVKEKEIQSKRMIESVRHQAIFTNHAIQTSAAKPRPQASQRASTSFQFPRHLPTPARGNSTNL-AFHADPDVTPLAKGARENHNHRRPPSLAQTPG---PASVTPSAFYNAFAATPKIVASGAGSRKKLKTSHEHEHERSPQPSPPPSPSRSQSQALPTRSQLVPDAHTSPTKSPRGSPRSKAGVSPAPTRHRLRMGGNKGKERTQSSPFRSSPSRVSRRTSSPTASSMDIDDEEPDADWEGDAGKETTDQRGEFLYQLFNHTPLSSYQPLLL-SYTTEPSLYRILTYHPPMQPNPPNHLYMTDQPGLRRPDLQQDQHQRPAGPAWGTQYTAQCYELLKTCGTGEMDDFAVLAQGVTRCLGGMLQALVSAILSERGKQDKDEDKKDVSYYEITALSNLYDLLSSLVHLFPSIITYISEISVI--IPATQRLVVEVFSREGKLEEMDTRLKAERNRERRGGGQEKMETEEEGGKKNEDEEKEEEEHESEEVKMEGRVFAAWAVELGDGIAGLCEAMCWYGDGSGIWQGSELVDIILGLTSRSLDSHTVRRGLEVFFAAAIHGNHFAFLTS--PTESTPSLAGQPPLIERLSRYLISPHPSASSEEILKMNLMIVKGMCMMAVSNTDAVVLMGSKTILVPALVLVLQAESSKIWGIHAYRTPVEDALALLHPSLSLLHQLVFPFPPFDSSSPPATLPSGSAVNPNATPQRNRL--CSSQIDSDAPIGIDLVQVLQQTSQIKEFNGLQHMFVSAMGCMAYGIFG--E-GIGSEQGVEEADLRAIQVLSGDLLENVVEGPEGDVIYELYVPNEEAPPEGIEG-----DG------------DKVQVDEDVYQEMDVDEG--------------
KwoDej_DNA_repair_protein-Rad26/1-1174 MSDPFDEDD-GFFDNPETLGMLDAVEERAIQASQ--QAAPKNRFTQPIRHVLAKP--RNSPTSSAASSTSRLKKEPRPVNTEPGIRGTGFGWEIGGKRSFDVERHIDNAKKREAYWNAGREEEDESPPVDVVMDGSGRYEVRNNVIRDRVGSNGSVSTEEAIITDKRREQPSMLGESLGLAGPGPGTTASQQQRMVRQQSQDA----IAARRKAMQAAAASSGLSAEPQPFVKPPLSRSNSNSSTGSGFLTSHITNNDQ-VRPPGQNRFANQGQLPNFVNEPKFNNNRSLSR----SVSAGAQIFHRNAQSNAIAGPSRLPTIPSESQSQN---GSNEANGS--VSEGREYSAPPLSQGSAARAAAIELETERRKRQELEAELTALRAQAQAKPNR------FASNAGEYEDIRKKVKELQSQVWAAKGEAEIVRRAQREEHQRHLAELERLKSTIENKDQELKARGDQAKRQVENIKHQAVFSNHAAHNSAMKNRQQSQR-FPASQSQVRGFPTPVKNGSPSRRRGVADEVFTPLVQSAKGKGES--MPTVSAVSSQAPVTGPTFGGFINAFAATPTIAPRVKRQK------------TAEKSSPPASPSRAVSP-------------------------SPFRVSPAPARSQKTPGS-VGEPG-EGVDWGDE--------ILPLGDAENAILDEPD-----QILDHDKDERAEFLYHLLNHVSLSTFQHAL--GSTKEPTLYRLMNYRPALTTP------------------------------GHEIYTSRCSDILKACGDPNVG-FDDLEEIMVHSLCDMLDYVVRIVL----------DVDQISLNEVAVFCNIITLLSSSTLLFPSMMRILVPTNTA---ENLRSVVHTIFADVSKVDAFKIRMRRPE---SDDGSHE------------------TNEAAQDTLKEKEEERDSWHVELADRIAGMAEVICFVSDS-SSWKGDELVDIILGLSSIHLEPFIVKRGIELFYVASQHICNFRSLVMSSDRYKIPASPNESPLIERLSRYLINPLSSASESEALHMSLLTIRGLCMLSISHQDAIIIMGAKSILVPALIIVVQRESSKLYGIHGVLQDYKAALSLLSPTLSLLHQLVFPAPVLTSNQTQSQSHIHAQAEAGVRNQEELLLDVESVPEDALPVGIDLPERINHAASTREFNGLQHLFVSAFGVMAYSQID--E-EV-----VSEVDQRGIQYLSGDLLENVVEGPEGDAIYELYVPLDEEEGEGGQMAQNEDDGAENNAGDDADQQNNADVDMEVYQEMERGFNENDNEVIEISDDDD
//
Image source snRcnf04440-target CNA02460, CNAG_00257:
# STOCKHOLM 1.0
#=GF RW van Nues, July 2023
#=GF https://coalispr.codeberg.page/paper
Found_target/1-12 -------------------------------------------GTCTCAGTAGTG-----------------------------------------------------
snRcnf04440/1-17 -------------------------------------AGCC-TCggGgtcgtcat-----------------------------------------------------
#=GS CNA02460/3-110 DE XM_024656201.1 AE017341.1:c645265-645154 Cryptococcus neoformans var. neoformans JEC21 chromosome 1, complete sequence
CNA02460/3-110 AATTCTTCAGCCGGTCAAAGCACGTTTGGCCATACTAGAGCTAGTCTCAGTAGTGATGCGTCAAGTATTGCCGCAGGTGCTAAAGAAACTCCAAATACTCTAGAAAAT
#=GS CNAG_00257/1-108 DE CP003820.1:c675260-675151 Cryptococcus neoformans var. grubii H99 chromosome 1, complete sequence
CNAG_00257/1-108 AATTCTTCATCCGGTCAAAACTCGTTTAGCCATCCTAGAGCTAGACTCAGTAGCGATGCGTCAAGTATTGCCGCAGGTGCTAAAGAAACTCCAAATACTCCTGAAAAT
#=GS WM276/3-110 DE CP000287.1:666522-666633 Cryptococcus gattii WM276 chromosome B, complete sequence
WM276/3-110 AATTCTTCAGCCGGTCAACACCCATTTGGCTATCCTAGAGCAAGGCTGAGTAGTGATGCATCAAGTATTTCCGCAGCTGCCAAAGAAACTCCAAATACTCTTGAAAAT
#=GS R265/3-110 DE CP025762.1:c626523-626414 Cryptococcus gattii VGII R265 chromosome 4
R265/3-110 AATTTTTCAGCCGGTCAACATCCATTTGGCTATCCTAGAGCAAGACTCAGTAGTGATGCGTCAAGTATTTCCGCGGCTGCCAAAGAAACTCCAAATCCTATTGAAAAT
//
Image source snRcnf04440-target CNB04900, CNAG_04007:
# STOCKHOLM 1.0
#=GF RW van Nues, July 2023
#=GF https://coalispr.codeberg.page/paper
Found_target/1-12 ---------------------------------------------------GTTTCAGTAGTG---------------------------------------------
snRcnf04440/1-17 ---------------------------------------------AGCC-TCggGgtcgtcat---------------------------------------------
#=GS CNB04900/1-108 DE XM_024656618.1 AE017342.1:1400337-1400445 Cryptococcus neoformans var. neoformans JEC21 chromosome 2 sequence
CNB04900/1-108 GTACATCCCTCCCTCTACCATTCGGTATCTTTATTCCCGAACCCAGGGCCGGTTTCAGTAGTGACGACGATCACAACACCCTTGATAGTAATGGCTTCGAATCGTCGT
#=GS CNAG_04007/1-105 DE CP003821.1:1385837-1385941 Cryptococcus neoformans var. grubii H99 chromosome 2, complete sequence
CNAG_04007/1-105 GTACATCTCTCCCTCTACCATTCGGTATCTTTATTCCCGAGCCCAGTTCCCGTTCCAGTAGTGATGAC---CATAACACCGTTAATAGTGATCGCTTTGGATCGTCGT
//
Image source snRcnf04440-target CNC05030, CNAG_02890:
# STOCKHOLM 1.0
#=GF RW van Nues, July 2023
#=GF https://coalispr.codeberg.page/paper
Found_target/1-12 -----------------------------------------------GTTCCAGCAGTG-------------------------------------------------------
snRcnf04440/1-17 -----------------------------------------AGCC-TCggGgtcgtcat-------------------------------------------------------
#=GS CNC05030/1-114 DE XM_569797.2 AE017343.1:c1514418-1514303 Cryptococcus neoformans var. neoformans JEC21 chromosome 3 sequence
CNC05030/1-114 CGCTGTCCAGGGTGGTGGTAACACTGGTTTACCAGGATTAGGTGCTGGTTCCAGCAGTGCGGGTGTTGCTGTTAGATGGAGCAAGACTGCGGTTGCCGAGAGGAACTGGAGAGA
#=GS CNAG_02890/1-114 DE CP003822.1:519646-519761 Cryptococcus neoformans var. grubii H99 chromosome 3, complete sequence
CNAG_02890/1-114 CGCTGTCCAGGGTGGTGGTAACACTGGTTTACCGGGATTAGGTGCTGGTTCCAGCAGTGCGGGCGTTGCTGTTAGGTGGAGCAAGACTGCGGTAGCAGAGAGGAACTGGAGGGA
#=GS R265/1-114 DE CP025759.1:c1704742-1704627 Cryptococcus gattii VGII R265 chromosome 1, complete sequence
R265/1-114 CGCCGTCCAGGGTGGTGGTAACACTGGTTTACCGGGATTAGGCGCTGGCTCCAGCAGTGCGGGTGTCGCTGTCAGATGGAGCAAGACCGCGGTCGCAGAGAGAAACTGGAGGGA
#=GS WM276/1-114 DE XM_003192996.1:411-526 Cryptococcus gattii WM276 uncharacterized protein (CGB_C7350C), partial mRNA
WM276/1-114 CGCCGTCCAGGGTGGTGGTAACACCGGTCTGCCAGGATTAGGGGCTGGCTCCAGCAGTGCGGGTGTTGCCGTCAGGTGGAGCAAGACGGCGCTCGCAGAGAGAAACTGGAGGGA
#=GS CryAmy/1-114 DE MEKH01000001.1:c1898048-1897935 Cryptococcus amylolentus CBS 6273 supercont2.1, whole genome shotgun sequence
CryAmy/1-114 TGCCGTGCAGGGTGGAGGAAACGCTGGTTTGCCCGGTATCGGTAAGGGTGCCAACAGTGCGGGTGTCGTGGTTAGGTGGAGCAGGACGGCTCTGGCAGAGAAGAACTGGAGGGA
#=GS CryFlo/1-114 DE RRZH01000002.1:c2021556-2021443 Cryptococcus floricola strain DSM 27421 chromosome 2, whole genome shotgun sequence
CryFlo/1-114 TGCCGTGCAGGGTGGAGGAAACGCTGGTTTGCCCGGTACCGGTAAGGGCGCCAACAGTGCGGGTGTCGTGGTTAGGTGGAGCAGGACGGCTCTGGCCGAGAAGAACTGGAGGGA
#=GS CryWin/1-114 DE AWGH01000002.1:c926279-926164 Cryptococcus wingfieldii CBS 7118 supercont1.2, whole genome shotgun sequence
CryWin/1-114 TGCCGTGCAGGGTGGAGGAAACGCTGGTTTGCCCGGTACCGGTAAGGGTGCCAACAGTGCGGGTGTCGTGGTTAGGTGGAGCAGAACGGCTCTGGCAGAGAAGAACTGGAGGGA
//
Image source snRcnf04440-target CND01470, CNAG_01017:
# STOCKHOLM 1.0
#=GF RW van Nues, July 2023
#=GF https://coalispr.codeberg.page/paper
Found_target/1-12 ---------------------------------------------------------GCCTTAGCAGTG-------------------------------------------
snRcnf04440/1-17 ---------------------------------------------------AGCC-TCggGgtcgtcat-------------------------------------------
#=GS CND01470/1-110 DE AE017344.1:410773-410885 Cryptococcus neoformans var. neoformans JEC21 chromosome 4 sequence
CND01470/1-110 ATTCGTCAAGCTCAACTTACAGTGATGGATGACCAGAACGATTTGCGTCATCTTCAAGCCTTAGCAGTGAGTCATCTCTGGTGAGAATT--TTAGCTAATTTTCCTAGCTCT
#=GS WM276/1-112 DE CP000289.1:873871-873985 Cryptococcus gattii WM276 chromosome D, complete sequence
WM276/1-112 ATCCGTCAAGCTCAACTTACAGTGATGGATGATCAGAACGATCTACGCCACCTTCAAGCCTTAGCAGTGAGTCATCGCTGGTGAGATTTTTTTGGCTAATTTTCCTAGCTTT
#=GS R265/1-110 DE CP025760.1:828877-828989 Cryptococcus gattii VGII R265 chromosome 2, complete sequence
R265/1-110 ATCCGCCAAGCGCAACTCACAGTGATGGATGATCAGAACGACCTACGCCATCTCCAAGCCTTAGCAGTGAGTCATCCCTGGTGAGATT--TTTGGCTAATCTTCCTAGCTTT
#=GS CNAG_01017/1-111 DE E3 ubiquitin-protein ligase SHPRH CP003824.1:c1423591-1423478 Cryptococcus neoformans var. grubii H99 chromosome 5, complete sequence
CNAG_01017/1-111 ATTCGCCAAGCTCAACTTACAGTATTGGATGATCAGAACGACCTGCGCCACCTTCAAGCCCTAGCAGTGAGTCATCTCTAGTGAGGAT-TTTTGGCTAATTTTCATAGCTTT
#=GS CryWIn/1-112 DE CP034269.1:499021-499142 Cryptococcus wingfieldii strain CBS7118 chromosome 9, complete sequence
CryWIn/1-112 ATTCGCCAGGCGCAACTTATTATACTAGACGAGCAGAACGATTTGCGACATTTACAAGCTCTTGCCGTGAGTTTTGCATTGACAACCGGTTACGACACAGCCGATCTCATCT
#=GS CryFlo/1-112 DE RRZH01000012.1:741516-741627 Cryptococcus floricola strain DSM 27421 chromosome 11, whole genome shotgun sequence
CryFlo/1-112 ATTCGCCAGGCGCAGCTTATCATACTAGACGAGCAAAACGATTTGCGACATTTACAAGCTCTTGCCGTGAGTTTTGCATTGAAAACGGGTTACGGCACAGCCGATCTCATCT
#=GS CryAmy/1-112 DE MEKH01000009.1:c775094-774980 Cryptococcus amylolentus CBS 6273 supercont2.9, whole genome shotgun sequence
CryAmy/1-112 ATTCGCCAGGCGCAGCTTATCATACTAGACGAGCAAAACGATTTGCGACATTTACAAGCTCTTGCCGTGAGTTTGGCATTGACAACGGGTTACGGCACAGCCGATCTCATCT
Annot/1-6 ------------------------------------------------------------------GTGrGT----------------------------------------
//
Image source snRcnf04440-target CNG03635, CNAG_07718:
# STOCKHOLM 1.0
#=GF RW van Nues, July 2023
#=GF https://coalispr.codeberg.page/paper
Found_target/1-12 --------------------------------------GCCCCAGCAGTG--------------------------------------------------
snRcnf04440/1-17 --------------------------------AGCC-TCggGgtcgtcat--------------------------------------------------
#=GS CNG03635/1-99 DE XM_024658644.1:644-742 Cryptococcus neoformans var. neoformans JEC21 hypothetical protein (CNG03635), mRNA
CNG03635/1-99 -ACCAGCGCCCAATGTCCCAGGCAGAAAGAGAAGACACGCCCCAGCAGTGCCCGAAGGTAAGAGCAAAAAGCTACCTAGCCCTCCATCGAAAGAAATTCA
#=GS CNAG_07718/1-99 DE XM_012195981.1:4269-4367 Cryptococcus neoformans var. grubii H99 multidomain RhoGEF (CNAG_07718), partial mRNA
CNAG_07718/1-99 -ACCAGCTCCTAACGTCCCAGGCAGAAAGAAAAGACACGCCCCAGCAGTGCCCGAAGGTAAAAGCAAAAAACTACCTAGCCTTTCATCGAAAGAACTTCA
#=GS R265/1-99 DE CP025765.1:c307939-307841 Cryptococcus gattii VGII R265 chromosome 7, complete sequence
R265/1-99 -GCCGGCTCCTAATGTCCCAGGCAGAAAGAGAAGACATGCCCCGGCAGTGCCGGAAGGCAAACGCAAGGAGCTACCTAGCCCTCCAGCGAAAGAACTTCA
#=GS WM276/1-99 DE XM_003195084.1:4587-4686 Cryptococcus gattii WM276 Protein binding protein, putative (CGB_G1440C), partial mRNA
WM276/1-99 -GCCGGCTCCTAATGTCCCAGGCAGAAAGAGAAGACATGCCCCAGCAGTGCCGGAAGGTAAACGCAAAGAGTTACCTAGCCCACCAACGAAAGAAGTCCA
//
Image source snRcnf04440-target CNG04675, CNAG_03097:
# STOCKHOLM 1.0
#=GF RW van Nues, July 2023
#=GF https://coalispr.codeberg.page/paper
Found_target/1-12 -------------------------------------GCTTTAGTAGTG-----------------------------------------------------
snRcnf04440/1-17 -------------------------------AGCC-TCggGgtcgtcat-----------------------------------------------------
#=GS CNG04675/1-102 DE AE017347.1:c1337315-1337203 Cryptococcus neoformans var. neoformans JEC21 chromosome 7 sequence XM_024658663.1:771-883 Cryptococcus neoformans var. neoformans JEC21 hypothetical protein (CNG04675), mRNA
CNG04675/1-102 TATGATTCTTTCCATATCGATGACAAAGCTCATCGGGGCTTTAGTAGTGTTGGGAGTTGCTCAATCGTGTTGGTATTATGTGTATCTAGAGAGCCCGTACGA
#=GS CNAG_03097/1-102 DE CP003827.1:40904-41016 Cryptococcus neoformans var. grubii H99 chromosome 8, complete sequence
CNAG_03097/1-102 TATGATACTTTCCATATCGATGACAAAGCTCATCGGAGCTTTAGTAGTGGTGGGAGTTGCTCAATCGTGTTGGTATTATGTGTATCTAGAGAGCCCATACGA
#=GS CP000292.1:2871-2983/1-102 DE Cryptococcus gattii WM276 chromosome G, complete sequence
CP000292.1:2871-2983/1-102 CATGATACTTTCTATATCGATGACAAAGCTCATCGGAGCTTTTGTAGTGTTGGGAGTAGCACAATCGTGTTGGTATTTTGTGTATTTGGAGAGCCCATATGA
#=GS R265/1-102 DE CP025765.1:1479-1589 Cryptococcus gattii VGII R265 chromosome 7, complete sequence
R265/1-102 TATGATACTTTCCATATCGGTGGCAAAACTCATCGGAGCTTTTGTAGTGTTGGGGGTAGCCCAATCGTGTTGGTATTATGTGTATTTGGAGAGTCCATACGA
#=GS CryAmy/1-102 DE MEKH01000016.1:c10385-10284 Cryptococcus amylolentus CBS 6273 supercont2.16, whole genome shotgun sequence
CryAmy/1-102 CATGCTACGTGGTCTTCCCATCTCCAAACTCATCATCTCGCTCGTCGTTCTCGGGCTTGCGAGAGCCTGCTGGTATTATGTGTATCTCGAGAGCCCCTACGA
#=GS KwoHev/1-102 DE ASQB01000084.1:1026-1137 Kwoniella heveanensis BCC8398 cont1.83, whole genome shotgun sequence
KwoHev/1-102 CATGGCAAGGCTGATCTCTCTCCCCAACTTGATCGCCTCTTTGGTGGTCCTCGGCGTTGCCCGAGCCTGTTGGTACTATGTCTACCTCGAGAACCCATACGA
//
Image source snRcnf04440-target CNH03220, CNAG_05312:
# STOCKHOLM 1.0
#=GF RW van Nues, July 2023
#=GF https://coalispr.codeberg.page/paper
Found_target/1-12 --------------------------------------------GCTCCAGTAGTG--------------------------------------------------
snRcnf04440/1-17 --------------------------------------AGCC-TCggGgtcgtcat--------------------------------------------------
#=GS CNH03220/1-106 DE AE017348.1:200671-200776 Cryptococcus neoformans var. neoformans JEC21 chromosome 8 sequence XM_572491.2:975-1080 Cryptococcus neoformans var. neoformans JEC21 conserved hypothetical protein (CNH03220), mRNA
CNH03220/1-106 CATTGGCCAAGGCGCTGTTGTGTCAGCAGCGACAACGACGCGGAGCTCCAGTAGTGCAGAAGAGACGAACAGCCCGAGCTCAATTTCAGCAATAGATTCCACTACA
#=GS CNAG_05312/1-79 DE CP003823.1:c1019231-1019153 Cryptococcus neoformans var. grubii H99 chromosome 4, complete sequence
CNAG_05312/1-79 CATTGGCCAGGGGGCTGTTATGTCAGCAGCAACAACGACTGGGAGCTCTAGTAGTGCAGAAGAGACGAGCAGCTCGAGC---------------------------
#=GS WM276/1-84 DE XM_003196237.1:825-908 Cryptococcus gattii WM276 uncharacterized protein (CGB_I4490C), partial mRNA
WM276/1-84 CATCGGCAATGCAGCTCCTGTATCAGCAACGACAACGACTTGGAGTTCTAGTAGTGCAGAAAAGACGAGCAGCAGCTCGAGTTC----------------------
//
Image source snRcnf04440-target CNH02290, CNAG_05584 intron:
# STOCKHOLM 1.0
#=GF RW van Nues, July 2023
#=GF https://coalispr.codeberg.page/paper
Found_target/1-12 ------------------------------------------------------------------GTTTCAGTAGTG----------------------------------------------------------------------------------
snRcnf04440/1-17 ------------------------------------------------------------AGCC-TCggGgtcgtcat----------------------------------------------------------------------------------
#=GS intron-CNH02290/11-137 DE AE017348.1:489179-489326 Cryptococcus neoformans var. neoformans JEC21 chromosome 8 sequence
intron-CNH02290/11-137 GAGGCCCTTGTCCACAGCCATGACCCGGAGCATGTGGGTGAC-----------------CCTCCTCGTTTCAGTAGTGATGCCAAAAA-----GGCTGACGAAGAA-----------CAGCCCGCCAACTTGATCTGTGACTTATGCCGAGAGTTCTACA
#=GS CNAG_05584/11-135 DE CP003833.2:c699332-699188 Cryptococcus neoformans var. grubii H99 chromosome 14, complete sequence
CNAG_05584/11-135 GAAGCCCTCGTCCACAGCCATGACCCGGAGCATGTGGGTCAC-----------------GCTCCTCGTTTCAGTAGTGATGCCAAAG-------GCTGACAAAGAA-----------CAGCCCGCCAACTTGATCGGTGACTTATGCCGAGAGTTTTATA
#=GS WM276/11-136 DE CP000297.1:c593053-592912 Cryptococcus gattii WM276 chromosome L, complete sequence
WM276/11-136 GAGGCCCTAGTTCACAGTCATGACCCGGAGCATGTGCGTGAC----------------CTCTCCTCGTTTCAGTGGTGATGTCAAAG-------ACTGACTAAGAG-----------CAGCCCGCTAACTTGATCTGTGACTTATGCCGAGAGTTCTACA
#=GS R265/11-136 DE CP025768.1:c588668-588527 Cryptococcus gattii VGII R265 chromosome 10, complete sequence
R265/11-136 GAGGCCCTAGTCCACAGTCATGACCCGGAACATGTGCGTGAC----------------CTCTTCTCGTTTCAGTGGTGATGCCAAAG-------ACTAACTAAGAG-----------CAGCCCGCCAACTTGATCTGTGACTTATGCAGAGAGTTCTACA
#=GS CryWin/11-130 DE CP034264.1:995907-996042 Cryptococcus wingfieldii strain CBS7118 chromosome 4, complete sequence
CryWin/11-130 GAAGCCCTTGTCCATAGCCACGACCCCGAACATGTAAGCGT---------------------CCCCGT--CAGTCATG-TGCAAGAG-----CTCATGATCGTCTA-----------TAGCCCGCCAACCTGATCTGTGACTTGTGCCGAGAATTCTACA
#=GS CryAmy/11-130 DE MEKH01000004.1:c582752-582617 Cryptococcus amylolentus CBS 6273 supercont2.4, whole genome shotgun sequence
CryAmy/11-130 GAAGCCCTTGTCCATAGCCACGACCCCGAACATGTAAGTAT---------------------CCCCGT--CAGTCATG-TGCAAGAG-----CTCATGAGCGCCTA-----------TAGCCCGCCAACCTGATCTGTGACTTGTGCCGAGAATTCTACA
#=GS CryFlo/11-130 DE RRZH01000006.1:977743-977878 Cryptococcus floricola strain DSM 27421 chromosome 6, whole genome shotgun sequence
CryFlo/11-130 GAAGCCCTTGTCTATAGCCACGACCCCGAACATGCAAGTAT---------------------CCCCGT--CAGTCATG-TGCAAGAG-----CTCATGATCGTCTA-----------TAGCCCGCCAACCTGATCTGTGACTTGTGCCGAGAATTCTACA
#=GS KwoHev/12-171 DE ASQB01000096.1:34401-34576 Kwoniella heveanensis BCC8398 cont1.95, whole genome shotgun sequence
KwoHev/12-171 GAAGCTCTGGTGCAGAGCCATGACCCCGAGCACGTGAGTCCTGATCTTGCTTGAGAGCGAGAGCGACCGGGTTTGAACATGACAGGAGTGAATAGCTAATGTTCTATGCTCACCTCTTAGCCCGCCAATCTGATTTGCGACCTGTGTCGAGACTTTTACA
#=GS TriOvo/7-113 DE WEIQ01000023.1:335408-335545 Trichosporon ovoides strain 2NF903A scaffold23-size702783, whole genome shotgun sequence
TriOvo/7-113 GAGGCGCTCGTCCAGAGCCAGGACCCGGAGCATGTGAGCGC--------------------------------------GGCGCTCAGTAGCTAGCTGACGC---------------CAGCCTGCGAACCTGATCCCCGAGCTGTGCCGCGAGTTCTACA
#=GS TriAsa/12-120 DE SCGW01000014.1:c45802-45683 MAG: Trichosporon asahii isolate N5_275_008G1 N5_275_008G1_scaffold_36, whole genome shotgun sequence
TriAsa/12-120 GAGGCGCTCGTCCAGAGCCAGGACCCGGAGCACGTAAGCTCCTCTTC------------------------------------CTGCCTGCTAAGCTGACGC---------------CAGCCCGCCAACCTGATCCCCGAGCTGTGCCGCGAGTTCTACA
Annot/1-13 ---------------------------------GTgrGT--------------------------------------------------------CTGA------------------YAG----------------------------------------
//
Image source snRcnf04440-target CNH01830, CNAG_05532 5’SS:
# STOCKHOLM 1.0
#=GF RW van Nues, July 2023
#=GF https://coalispr.codeberg.page/paper
Found_target/1-12 ----------------------------------------------GCTTTAGTAGTG-----------------------------------------------------------
snRcnf04440/1-17 ----------------------------------------AGCC-TCggGgtcgtcat-----------------------------------------------------------
#=GS CNH01830-5'SS/1-116 DE AE017348.1:c608012-607897 Cryptococcus neoformans var. neoformans JEC21 chromosome 8 sequence
CNH01830-5'SS/1-116 CTATTCGAGGAGCCAGATTGGCGATCAACACTGGTATCATTGGGAAGCTTTAGTAGTGCGTA-TGCCCATGCTATGTTAATATTGAGCCTTCTAGCTGCTAACAGACGAGTAGAGGG
#=GS CNAG_05532/1-116 DE CP003833.2:576447-576562 Cryptococcus neoformans var. grubii H99 chromosome 14, complete sequence
CNAG_05532/1-116 CTATTCGAGGAGCCCGATTGGCGATCAACATTGGTGTCATTGGGAAGCTTCAGTAGTACGTA-TGCCCATGCTGTGTGAAAATTAAGCCTTTTAGCTGCTAATAGACGAGTAGAGGG
#=GS R265/1-115 DE CP025768.1:469231-469345 Cryptococcus gattii VGII R265 chromosome 10, complete sequence
R265/1-115 CTTTTCGAGGAGCCCGATTGGCGATCAACATTAGTGTCATTAGGAAGCTTCAGTAGTGAGCTGTGCCCATCATATGTGAA--CTAAGCTTCCTGCTTGCTAACACATGATCAGAGGG
#=GS WM276/1-115 DE CP000297.1:469144-469258 Cryptococcus gattii WM276 chromosome L, complete sequence
WM276/1-115 CTATTCGAGGAGCCTGATTGGCGATCAACGTTGGTGTCACTAGGAAGCTTCAGTAGTAAGT-GTGCCCACCACATGCGGA-TTTATGCTTCCAACTTGCTAACACATGAGCAGAGGG
#=GS CryWin/1-104 DE AWGH01000003.1:634396-634526 Cryptococcus wingfieldii CBS 7118 supercont1.3, whole genome shotgun sequence
CryWin/1-104 CTGTTTGAGGAGCCAGACTGGAGAGGAACCCTGGTTTCTCTGGGCAGTTTCAGCAGTGAGT---GCACATATAA--------GCTCTCATGGTGGA-GCTAACA-TAGTACAGAGGG
#=GS CryFlo/1-104 DE RRZH01000006.1:719102-719222 Cryptococcus floricola strain DSM 27421 chromosome 6, whole genome shotgun sequence
CryFlo/1-104 CTGTTTGAGGAGCCAGACTGGAGAGGAACCCTGGTTTCTCTGGGCAGTTTCAGCAGTGAGT---GCACATATAA--------GCTCTCATGGTGGA-GCTAACA-TAGTACAGAGGG
#=GS CryAmy/1-104 DE MEKH01000004.1:c861693-861583 Cryptococcus amylolentus CBS 6273 supercont2.4, whole genome shotgun sequence
CryAmy/1-104 CTGTTTGAGGAGCCAGACTGGAGAGGAACCCTGGTTTCTCTGGGCAGTTTCAGCAGTGAGT---GCACATATAA--------GCTCTCACGGTGGA-GCTAACA-TAGTACAGAGGG
#=GS TreFuc/1-91 DE BRDD01000107.1:359762-359852 Tremella fuciformis NBRC 9317 DNA, KCNB80TF.107, whole genome shotgun sequence
TreFuc/1-91 TTGTTTGAGGAGACGGATTGGCGGTCCACACTGGTGTGTCTGGGAAGCTTCAGCAGTGGGT--CGCGACTGTCA-------TCACATGAGGCTGGAAGCT-----------------
#=GS TreYok/1-106 DE BRDC01000026.1:c715484-715363 Tremella yokohamensis NBRC 100148 DNA, KCNB35TY.26, whole genome shotgun sequence
TreYok/1-106 CTGTTTGAGGAGAAGGATTGGCGGTCCACACTGGTGTGCCTGGGAAGCTTCAGCAGTGGGT--AACAACTGTCA-------ACATATGAGGCTGGAAGCTGAACGGA--GCAGAAGG
#=GS PapTer/1-110 DE JAHXHD010001308.1:7358-7490 Papiliotrema terrestris strain LS28 scaffold-1307, whole genome shotgun sequence
PapTer/1-110 CTGTTCGAGGAGGAAGATTGGCGGTCGACGGTGATCTCCCTGGGGAGCTTCAGCAGTGGGT--CGCTCATACT-ACACCGGG-GCGCGAGAGTGCAGGCTGACTC---GACAGAGGG
Annot/1-13 -------------------------------------------------------GTgrGT-------------------------------------CTGA--------YAG----
#=GS NaeEnc/1-117 DE MCFC01000025.1:182144-182274 Naematelia encephala strain 68-887.2 BCR39scaffold_25, whole genome shotgun sequence
NaeEnc/1-117 TTGTTTGATGAACCTGATTGGAGAGGGACTTTGGTATGTGTTGGGAGTTTTAGTAGTGAGTTTTATTTCGTCTTGTACTGTTCAAGAAGGATGGTTGGCTTTTGTTCTTCATCTTCG
//
Image source snRcnf04440-target CNK01680, CNAG_02680:
# STOCKHOLM 1.0
#=GF RW van Nues, July 2023
#=GF https://coalispr.codeberg.page/paper
Found_target/1-12 ------------------------------------------------------------GCTCCAGCAGTG----------------------------------------------
snRcnf04440/1-17 ------------------------------------------------------AGCC-TCggGgtcgtcat----------------------------------------------
#=GS CNK01680/1-117 DE XM_567843.2 AE017351.1:494755-494871 Cryptococcus neoformans var. neoformans JEC21 chromosome 11 sequence
CNK01680/1-117 -CACTGGATATCACTGCCATGACAAGATCTGGGAAGAAGAAAAAGGTGGATTCAAAAGCTGCTCCAGCAGTGGGAGCATCGCATACCAATGCGGTTGGCACTACCACAATACATGACG
#=GS CNAG_02680/1-117 DE VPS15 protein kinase CP003822.1:c1040179-1040063 Cryptococcus neoformans var. grubii H99 chromosome 3, complete sequence
CNAG_02680/1-117 -CACTGGATATCACTGCCATGACAAGATCTGGGAAGAAGAAAAAGATGGATTCAAAAGCTGCCCCAGCAGTAGGAGCATCGCATACCAATGCGGTGGGCACTACCACGATACATAACG
#=GS R265/1-117 DE CP025759.1:c515274-515158 Cryptococcus gattii VGII R265 chromosome 1, complete sequence
R265/1-117 -CATTGGATATTACTGCCATGACAAAATCTGGGAAGAAGAAAAAGGTGGACTCAAAAGCTGCTCCAGCAGTGGGAGCATCACATACGAATGCAGTGGGGACTACCACGATACATGACG
#=GS WM276/1-117 DE CP000296.1:c515484-515368 Cryptococcus gattii WM276 chromosome K, complete sequence
WM276/1-117 -CATTGGATATTACTGCCATGACAAAATCTGGGAAGAAGAAAAAGGTGGACTCAAAAGCTGCTCCAGCAGTGGGAGCATCACATACGAATGCAGTGGGGACTACTACGATACATGACG
#=GS CryWin/1-118 DE CP034270.1:c542242-542125 Cryptococcus wingfieldii strain CBS7118 chromosome 10, complete sequence
CryWin/1-118 TCAACGCTAGATATTGCTGGGATGACACGCAACAGCAAGCGGAAGGTAGACTCAAAAGCGGCCCCAGCTATCGGCGCCTCACGCACCAATGCGGTTGGTATGACTACCATACATGATG
#=GS CryAmy/1-117 DE MEKH01000014.1:659133-659249 Cryptococcus amylolentus CBS 6273 supercont2.14, whole genome shotgun sequence
CryAmy/1-117 -CAACGCTAGATATTGCTGGGATGACACGCAACAGCAAGAGGAAGGTAGACTCAAAAGCGGCCCCAGCTATAGGCGCCTCACGCACCAATGCGGTTGGTATGACTACCATACATGATG
#=GS TreTag/1-118 DE CAJHEQ010000121.1:3630-3747 MAG: Tremellales sp. Tagirdzhanova-0007 genome assembly, contig: TREM_121, whole genome shotgun sequence
TreTag/1-118 TCCTCTTCGCTCGATCTTGCGGCGATTACCCGATCAGGAAGAAGATTCGACTCAAAAGCGGCACCGGCTGTAGCGGCTACCCCAACGAACGCCATTGGCACGACAAGCATCCATGACG
#=GS KwoSha/1-114 DE NQVO01000003.1:c370337-370224 Kwoniella shandongensis strain CBS 12478 scaffold00003, whole genome shotgun sequence
KwoSha/1-114 ----CAATAGATATCACTGCGATGACACGGTTAGGAAGAAAGAAGGTGGAGTCGAAAGCAGCACCAGCCGTCGGTGCATCGCACACCAATGCAATTGGTACTACTACAATACACGATG
#=GS KwoMan/1-118 DE ASQF01000052.1:c206464-206347 Kwoniella mangroviensis CBS 8886 cont1.52, whole genome shotgun sequence
KwoMan/1-118 TCTTCCATTGATCTGGCCGCTCTTTCCCGGTCTAGTCGTAAGAAGATAGATTCTAAGGCTGCTCCAGCCGTAGCTGCTTCTCACACCAACGCGACAGGCACAACAACGATTCACGACG
#=GS BulAlb/1-117 DE CAMYTR010000004.1:c42787-42671 Bullera alba genome assembly, contig: jcf7180000012096, whole genome shotgun sequence
BulAlb/1-117 -ATCTCGCGGCGATCACAAGGAGTGGCAGGAGGAAGTCGGAGAGGCTGGATGGCAAAGCCGCTCCGGCGGTTGCTGCCTCGCATACGAACGCAGTGGGCGTGACGACAATTCATGACG
#=GS CryGC4/1-118 DE JALPCA010000298.1:1490-1607 Cryptococcus sp. GC_Crypt_4 iso00_46_331, whole genome shotgun sequence
CryGC4/1-118 TCTACGATCGATCTGGCAGCTGTGACGAGGACTGGAAGGAAAAGGCTGGATTCAAAGGTCGCTCCTGCCATTGGAGCCTCAAATACAACGGCCATCGGGACTACAACCATTCACGATG
#=GS PapTer/1-117 DE JAHXHD010000402.1:32631-32747 Papiliotrema terrestris strain LS28 scaffold-401, whole genome shotgun sequence
PapTer/1-117 -CTTCGAGCATCGATCTGGCATCTGTCGCGAGGGGCAAGAAGAAGCTCGATGCGAAAGCGGCACCGGCTGTTGCTGCCTCGCATGCTAACGCGCTGGGCACGACCTCGATCCACGATG
//
Image source snRcnf04440-target CNK02520, CNAG_01909:
# STOCKHOLM 1.0
#=GF RW van Nues, July 2023
#=GF https://coalispr.codeberg.page/paper
Found_target/1-12 --------------------------------------------------------GCTCCAGTAGTG----------------------------------------------
snRcnf04440/1-17 --------------------------------------------------AGCC-TCggGgtcgtcat----------------------------------------------
#=GS CNK02520/1-114 DE AE017351.1:731981-732094 Cryptococcus neoformans var. neoformans JEC21 chromosome 11 sequence
CNK02520/1-114 GTCCGCCTCTAAAGACCGTTGGGTCAAACAACGGCCTTCATACAAGGCATACACTGGCTCCAGTAGTGTCACCACAACGACTTCCGGAACGAACCCAGACTCTCGCACCTCCAA
#=GS CNAG_01909/1-114 DE XM_012197451.1 signal transducer CP003830.1:1239146-1239259 Cryptococcus neoformans var. grubii H99 chromosome 11, complete sequence
CNAG_01909/1-114 GTCCGCCTCTAAAGACCGTAGGGTCAAACAACAGTCTCCATACAAGGCATACACTGGCTCCAATAGTGTCACTACAACGAGTTCCAGAGCAAACCCAGACCGTCGCACCTCCAA
#=GS WM276/1-114 DE CP000296.1:c294205-294092 Cryptococcus gattii WM276 chromosome K, complete sequence
WM276/1-114 GTCCGCCTTTAAAGACCGTTGGGTCAAACAACAGCCTTCATACATGGCATACATTGGCTCCCGTGGTGTCACCACAACGACTTCCAGAGCAAACCCAGACCGTCATGCCTCCAA
#=GS R265/1-114 DE CP025759.1:c297133-297020 Cryptococcus gattii VGII R265 chromosome 1, complete sequence
R265/1-114 GTCCGCCTTTAAAGACCGTAGGGTCAAACAACAACCTTCATACATGGCATACATTGGCTCCTGTGGCGTCACCGCAACGACTTCCAGAGCAAACCCAGACCGTCATGCCTCCAA
//