snR75-SNORD15

../../_images/snR75-SNORD15_h99_igb.png

  • snR75-SNORD15_intronic-boxCDsnoRNA-220nt-in-CNN00700

  • Within 1st intron of CNN00700 (CNAG_06340) for pre-rRNA-processing protein TSR4

  • Predicted target in 25S rRNA: [ta](gcCaAAt)[gc]ctcGtcatc

  • Orthologue of yeast snR75, human SNORD15A, or SNORD15B (D' guide) and Drosophila melanogaster

  • Note that the human or fly 28S rRNA is not annotated to be modified at the site targeted by the D’ guide of SNORD15; this guide is not conserved in plants

  • The role of the conserved sequence tagtttggcgact is not clear; it noes not provide extra base-pairing to 25S rRNA at the site that was shown to interact with the accessory guide ccattcatgc of yeast snR75 [van.Nues-2011].

  • Many possible interaction sites (rgtygyyrrrytr) are present in the genome; two, with less affinity, are in rRNA ((t)aaagttgttg in 18S, cgctgaact in 25S rRNA), while a short section of the conserved element (gtttggc) could extend the helix with the methylation site (in between round brackets of [ta](gcCaAAt)[gc]ctcGtcatc).

../../_images/SNORD15-align.png

  • A large, irregular stem loop with a few bulges (indicated by curly brackets that do not represent exact interactions) is bridging the C’ and D’ boxes

>AE017356.1:229755-229974 Cryptococcus neoformans var. neoformans JEC21 chromosome 14 sequence
GAGCTAGGATGATACCGATGACGAGACCTAGCCTCTTCCGCTTTTCGTCTCTTTTCTCTTTGTTGCCCAT
TCCGATTGGATTCTCATCCTTCGTTTTGAAGAATGCTTGTCTAGTCCTCGTGTGAATGGGAATTACAATG
AGGCAGGAGGGAGATGTCTGAGTGTGTTGAGTCGGTGCCGAGTCTTTCACTAGTTTGGCGACTTTATTTC
TGAGCTTATA







  • Image source snR75-SNORD15:

# STOCKHOLM 1.0
#=GF RW van Nues, August 2023
#=GF https://coalispr.codeberg.page/paper
#=GS Acc.bp-18S/1-11 DE RGTTGYYR  AGTTGTTG
Acc.bp-18S/1-11              ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GUUGUUGAAA-u----------------
#=GS Acc.bp-25S/2-10 DE cCGCTGAACTt
Acc.bp-25S/2-10              ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UCAAGUCGC-----------------------
Annot/1-43                   -----RTGATGA----------CUACUGCUC-CTGA---------------------------------------------------------------------------------------------------------------------------------------------------------------RTGATGA---------------UAAACCG------------CTGA--------
#=GS snR75-SNORD15/1-220 DE intronic-boxCDsnoRNA-220nt-in-CNN00700 ncrna 14:229754:229973:1
snR75-SNORD15/1-220          GAGCTAGGATGA------TACCGATGACGAGACCTAGC----------CTCTTCCGCTTTTCGTCTCTTTTCTCTTTGTTGCCCATTCCGATTGGATTCTCATCCTTC-GTTTT-GAAGAATGCTTGTCTAGTCCTCGTGTGAATGGGAATTACAATGAGGCAGGAGGGAGATGTCTGAGTGTGTTGAG-----TCGGTGCCGAGTCTTT-CAC-TAGTTTGGCGACTTT-ATT-TCTGAGCTTATA-
#=GS in-CNAG_06340/1-220 DE CP003832.1:244420-244639 Cryptococcus neoformans var. grubii H99 chromosome 13, complete sequence
in-CNAG_06340/1-220          GAGCTAGGAAGA------TACCGATGACGAGACCTAGC----------CTCTTCCGCTTTTCGTCACTTTTCTCTTTGTTGCCCGTTCCGATTGGATTCTCATCCTTC-GTTTT-GAAGAATGCTTATCTGGTCCTCGTGTGAATAGGAATTACAATGAGGCAGAAGGGAGGCGTCTGAGTGTGCTGAG-----TCGGTGCCGAGTCTTT-CAC-TAGTTTGGCGACTTT-ATT-TCTGAGCTTATA-
#=GS R265/1-220 DE CP025771.1:c458127-457908 Cryptococcus gattii VGII R265 chromosome 13, complete sequence
R265/1-220                   GAGCTAGGAAGA------TACCGATGACGAGACCTAGC----------CTCTTCCGCTTTTCGTCTCTTTTTTCTTCGTTGCCTATCCCGATTGGATTTTCATCCTTC-GTTTT-GAAGAATGTTTATCTGGTCCTCGTGTGGATGGGAATCACAATGAGGTAGGATGGAGGCGTCTAAGTGTGTTGAG-----TCGGTGCCGAGTCTTA-CAC-TAGTTTGGCGACTTT-ATT-TCTGAGCTCATA-
#=GS WM276/1-220 DE CP000299.1:197163-197382 Cryptococcus gattii WM276 chromosome N, complete sequence
WM276/1-220                  GAGCTAGGAAGA------TACCGATGACGAGACCTAGC----------CTCTTCCGCTTTTCGTCTCTTTTTTCTTCGTTGCCTATCCCGATTGGATTTTCATCCTTC-GTTTT-GAAGAATGTTTATCTGGTCCTCGTGTGGATGGGAATCACAATGAGGTATGATGGAGGCGTCTAAGTGTGTTGAG-----TCGGTGCCGAGTCTTT-CAC-TAGTTTGGCGACTTT-ATT-TCTGAGCTCATA-
#=GS CryWin/1-222 DE CP034263.1:1376111-1376332 Cryptococcus wingfieldii strain CBS7118 chromosome 3, complete sequence
CryWin/1-222                 ATTCAAGGACGAA-----CACCGATGACGAGACCTA----------GCGTCTTCCACTCTCCATCGTCTCACCGTCGATTGCCTATCCCGGCTGGACTTTCATCCTTC-GTTTT-GAAGGGCGTCTGTCTGGTCCTCGTGTGGATGGGGTCAACAACCGGTAGCGGGGTCATGGTTGAACTGGGGGATGC------GGTGCCGAGTCTA--TACTTAGTTTGGCGACTTTTAATTTCTGAGCTCACA-
#=GS CryAmy/2-222 DE XM_019142289.1:65-287 Cryptococcus amylolentus CBS 6039 hypothetical protein (L202_07538), mRNA
CryAmy/2-222                 GATTAAGGACGAA-----CACCGATGACGAGACCTA----------GCGTCTTCCACTCTCCATTATCTCACCGTCGATTGCCCATCCCGGCTGGACTTTCATTCTTC-GTTTT-GAAGGGCGTCTGTCTGGTCCTCGTGTGGATGGGGTCAACAATTGATAGCGGGGTCATGGTTGAACTGGGAGATGC------GGTGCCGAGTCTA--TACTTAGTTTGGCGACTTTTATT-TCTGAGCTCACA-
#=GS CryFlo/2-222 DE RRZH01000003.1:1413179-1413401 Cryptococcus floricola strain DSM 27421 chromosome 3, whole genome shotgun sequence
CryFlo/2-222                 AATCAAGGACGAA-----CACCGATGACGAGACCTA----------GCGTCTTCCACTCTCCATCGTCTCACCGTCGATTGCCTATCCCGGCTGGACTTTCATCCTTC-GTTTT-GAAGGGCGTCTGTCTGGTCCTCGTGTGGATGGGGTCAACAATCGGTAGCGGGATCATGGTCGAACTGGGGGATGC------GGTGCCGAGTCTA--TACTTAGTTTGGCGACTTTTATT-TCTGAGCTCACA-
#=GS CryVH5/1-222 DE JANBXI010000034.1:c40795-40573 Cryptococcus sp. VH57_BW 34, whole genome shotgun sequence
CryVH5/1-222                 GAGCTAGGATGA------TACCGATGACGAGACCTA----------GTCTTGCCTTTCCACCGCTCTTCTTACCTCTGCTCCCTATAACGGTTCGGCCTCTTCTCCTC-GTTTT-GAGGGGATCTGGCTGGGCCCTCGCGTGTATGGGGGCTCAAGCGGAGGCTCGAGGAGAGTGGCTGGAGGGGTCGAGAC----GGTGCCGAGTCTATACAC-TAGTTTGGCGACTTT-ATT-TCTGAGCTCTAT-
#=GS CryGC7/4-223 DE JALPBX010000034.1:c8988-8766 Cryptococcus sp. GC_Crypt_7 iso00_79_34, whole genome shotgun sequence
CryGC7/4-223                 GCTTTCTGATGA------TACCGATGACGAGACCTA---------GTCTCCTTTCCTCACCGTTTCCTACCAACCTTGCTCCTCACCCCGATCTATGTTCTC-GCCTC-GTTCT-GAGG-GGGGAACGTGGATCCTCGCGTGGGTGGGGATCCAGTGAGAGCTTGTGTGGGAGATGGATGAGGAAGGGCGAC----GGTGCCGATTCATATTAC-TAGTTTGGCGACTTT-ATT-TCTGATCTGCT--
#=GS CryGC5/2-223 DE JALPBZ010000023.1:c9298-9076 Cryptococcus sp. GC_Crypt_5 iso00_58_23, whole genome shotgun sequence
CryGC5/2-223                 TGCTTCTGATGAC-----TACCGATGACGAGACCTA---------GTCTCCCCTCCTCTGCGTCTCCTGCCGACCTTGCTCCTCACCCCGATCCGCGTTCTCC-CCTC-GTTCT-GAGGTGGGATTCATGGATCCTCGCGTGGGTGGGGGTCCAGTGAGAAGTTGTGTGGGAGATGCA-ACGGAAGGGCGAC----GGTGCCGATTCATA-TAC-TAGTTTGGCGACTTT-ATTTTCTGATCTGCTT-
#=GS CryGC3/2-222 DE JALPCB010000038.1:c46248-46027 Cryptococcus sp. GC_Crypt_3 iso00_45_38, whole genome shotgun sequence
CryGC3/2-222                 TGCTTCTGATGAC-----TACCGATGACGAGACCTA---------GTCTCCCCTCCTCTGCGTCAACTGCCAACCTTGCTCCTTACCCCGGTCTGCGTTCTCC-CCTC-GTTCT-GAGGA-GGGCACGTGGATCCTCGCGTGGGTGAGGGTCCAGTGAGTAGTTGTGTGGGAGATGCG-ACGGAAGGGCGAT----GGTGCCGATTCATA-TAC-TAGTTTGGCGACTTT-ATTTTCTGATCTGCTT-
#=GS KwoHev/3-221 DE ASQC01000032.1:161724-161945 Kwoniella heveanensis CBS 569 cont2.32, whole genome shotgun sequence
KwoHev/3-221                 CTTGAATGATGA------TACCGATGACGAGACCTA---------GTCTCATCACTTACCCCGCCTCAGTCCGGCCTACTCCTCATTCCGATCGTTCATTGTCT-CTC-GTTTT-GAGC-GGCGATGGATGGTCCTTGCGTGGATGAGGGCTCAGTGGGTTTGGTGCTGAGGCGGCCGTGGGAGATGGCAC-----GGTGCCGAGTCTTA-CAC-TAGTTTGGCGACTTT-ATT-TCTGATCTTTTG-
#=GS KwoSha/2-230 DE NQVO01000039.1:c152571-152342 Kwoniella shandongensis strain CBS 12478 scaffold00039, whole genome shotgun sequence
KwoSha/2-230                 GAGCAGTGATGAA-----CACCGATGACGAGACCTA--------GTCTCTTCTCCTTCTCCCGACCCCTTGACCTCACTCTCTTATCCCGATCGACTTCTCACTCCTC-GTTCT-GAGGGGAGAGAGGTTGATCCTCGTGTGGATGAGAGGTTCAGTGGGTCTGTCGAGGGGTGGTTTGGAGATGGGAGAAGAGACGGTGACGATTGTTA-TAC-TAGTTTGGCGACTTT-ATCTTCTGAGCTCTAC-
#=GS KwoMan/3-226 DE ASQF01000020.1:689253-689478 Kwoniella mangroviensis CBS 8886 cont1.20, whole genome shotgun sequence
KwoMan/3-226                 TTTAAATGATGA------AACCGATGACGAGACCTAA----TCCCTCTTTCTCCTTTCTTTCGATTTTCCTCCGTTCATTCTTCTTCCCGATCGG-TTCGTCCTGTTC-GTTCT-GAACGGGACGGG-TCGGTCTTCGTGTGGAAGAAGGTTCATAATGGATGAAGGGTCGGGGGGCTGGAGGAGAGGGAC-----GATGCCGAGTCTTATTAC-TAGTTTGGCGACTTT-ATT-TCTGATACAAT--
#=GS NaeEnc/3-221 DE MCFC01000013.1:c123683-123463 Naematelia encephala strain 68-887.2 BCR39scaffold_13, whole genome shotgun sequence
NaeEnc/3-221                 AACGACTGATGA------TACCGATGACGAGACCTA---------GTCCCTCTCATTCCCCACTACTGCCTCCCTCGCTTCCCTACTCCGATTGAAGCTCAGTCTCC--GTCTT-GGAGA-CTGAGTCGATATCCTCGTGTGAGTAGGGGCTCAAGCTTGTGGTGTTTGTTCTGGGCGAGTGAAGTGGGAC-----GGTGCCGATTCTCA-CAC-TAGTTTGGCGACTCA-TTTTTCTGACATGTC--
#=GS NaeAur/3-218 DE JAKFAO010000005.1:c239484-239267 Naematelia aurantialba strain NX-20 Contig5, whole genome shotgun sequence
NaeAur/3-218                 GATGACTGATGA------TACCGATGACGAGACCTA---------GTCCTTCTCTCTCCCCTCTCCAGACTCCCTCACTTCCCCGCTCCGACGGAGGCGCAGTCTCC--GTCTT-GGAGG-CTGGGTCGATGTCCTCGTGCGAGCGGGGGCTCAAGTGTGCGATGCTAGTTTGGGCGAGAGGCGATGGAC------GGTGCCGATCTCA--CAC-TAGTTTGGCGACTCA-TTT-TCTGACATGTC--
#=GS CryGC4/35-244 DE JALPCA010000072.1:c21000-20757 Cryptococcus sp. GC_Crypt_4 iso00_46_102, whole genome shotgun sequence
CryGC4/35-244                TTTGAATGATGAT-----CATTGATGACGAGACCTATTT--------CGTCTTTTCCATTCCTCTCACCTTTCACTCTTATTCCTCCCTTGTATCATGATTAAACCTC-GTTTT-GAGGTATGGTCCGATATGAGTGGAGAACCAGGATGAGAGTGCGAGTGAGCAGGGCGGTTTAGACG-----------------ATGAAGACTCTA--TAC-TAGTTTGGCGACTTT-ATT-TCTGACCTATAC-
#=GS CryFla/8-217 DE CAUG01000368.1:1878-2096 Cryptococcus flavescens NRRL Y-50378 WGS project CAUG00000000 data, contig NODE_687_length_47073_cov_44_383659, whole genome shotgun sequence
CryFla/8-217                 CTTGAATGATGA------TACCGATGACGAGACTTATCT------CCCTCCTCTTCTTCCACTTCCACCCTTGTCGTCCATCGCCTGCAATCGGTTCCATTGGTCTTC-GTCTT-GAAGGCCGCGGGACCGTGTCGCGGGATCACGATGGAAGGCAAGAGGAGGTGGAGAGGGGGACGG------------------ATGCAGATCCTAA--AC-TAGTTTGGCGACTTT-ATT-TCTGACCTTGTT-
#=GS PapTer/4-212 DE JAHXHD010000847.1:c73221-73010 Papiliotrema terrestris strain LS28 scaffold-846, whole genome shotgun sequence
PapTer/4-212                 TTCGAATGATGA------TACCGATGACGAGACTTATT-------CCCTCCTCTTCTTCCACTTCCATCCTTGTCGTCCATCGCCTGCAATCGGTCCCATTGGTCTTC-GTTTT-GAAGACCGCGGGGCTGTCTCGCGGGAACACGGTGGACGGTAAGAGGTGGTGGAGAAGTGGACGG------------------ATGCAGATCCTAA--AC-TAGTTTGGCGACTTT-ATA-TCTGACCTATTG-
#=GS PapLau/3-209 DE JAAZPX010000008.1:c509166-508957 Papiliotrema laurentii strain IF7SW-F4 scaffold14_cov198, whole genome shotgun sequence
PapLau/3-209                 TTTGCCTGATGA------TACCGATGACGAGACTTACC-----------CCTCTCTCACCCCCATATCATACCGGGCCTCGCTACCTGCCCTCTTCACTGTCTATTCC-GTCTT-GGCGTAGACGGTGGTTTGGGCGGGGTTTATTAGTGGGGTTTTGGGAGGTATGGTCGATTGAGGAGG----------------TTGACGATCTCAA--AC-TAGTTTGGCGACTTT-ATT-TCTGATCTCGTC-
#=GS KocImp/6-219 DE NBSH01000006.1:c172215-171997 Kockovaella imperatae strain NRRL Y-17943 BD324scaffold_6, whole genome shotgun sequence
KocImp/6-219                 CTTCTATGATGA------TACCGATGACGAGACCTA--------GACTCGCTGAGTCTGCTCCAGAGTTGCTGAGCTTCTTTCTCCGTCGTCAGCTGTTCCAGACCTC-GTTTT-GAGGTCTAAGCAGTTGATATTGGAGATACCATGAAGCTCTGTCAGCGAAGGTTGTGGAACTTGAGACGTC-----------GGTGCCGATCTCAA--TC-TAGTTTGGCGACATT-TTA-TCTGATCAGAT--
#=GS TreTag/3-217 DE CAJHEQ010000001.1:c11647-11394 MAG: Tremellales sp. Tagirdzhanova-0007 genome assembly, contig: TREM_1, whole genome shotgun sequence
TreTag/3-217                 TCTACCTGATGA------TACCGATGACGAGACCTA--------GTCTGCTCCATCTCTTCGACTCCGCTCGTCTCGCTGCCCCGTCTCAATCACTCTGTCACTTTCC-GTCTT-GGAAGGCGGCTTGCTTGAGCCGGGAAATCACAGCGAGATCGCAGCCTGATCTTAGGATTGTGAGAATGAC-----------GTTGCCGATTCT---CACACAGTTTGGCGACTCT-TTA-TCTGATTCCCAT-
#=GS TreFuc/1-204 DE BRDD01000021.1:41387-41619 Tremella fuciformis NBRC 9317 DNA, KCNB80TF.21, whole genome shotgun sequence
TreFuc/1-204                 CGAGAATGATGA------TACCGATGACGAGACCTAA------------CCCGTCATGTCCCCACTCATTCTCCTCGGCTCTTCCTCCCGTCCTGCTCAGACGGCACC-GTCTT-GGTGTCGAACGAGCCGGATGAGAGGGTATAGGGGCTGATCGAGATGAAGAGGAGCATGGCGGG-----------------CGATGCCGATTCT---CACTCTGTTTGGCAACATT--TA-TCTGACTCACCG-
#=GS TreYok/1-203 DE BRDC01000027.1:633697-633929 Tremella yokohamensis NBRC 100148 DNA, KCNB35TY.27, whole genome shotgun sequence
TreYok/1-203                 CGAGAATGATGA------TACCGATGACGAGACCTAA------------CCCGTCATGTCTCCTCTCATCCTCCTTGGCTCTTCCTCCCGTCCTGCTCAGACGGCACC-GTCTT-GGTATCGAACGAGCCGGATGAGAGGGTATAGGGGCTGAGCGAGATGAA-AGGAGCATGGCGGG-----------------CGATGCCGATTCT---CACTCTGTTTGGCAACATT--TA-TCTGACTCACTG-
#=GS TreMes/5-211 DE SDIL01000103.1:60097-60307 Tremella mesenterica strain ATCC 28783 supercont1.103, whole genome shotgun sequence
TreMes/5-211                 TGAGAATGATGA------TACCGATGACGAGACTTA---------ACCTTTCTTTTCAAATTTGATCCATCTCATCACTCTCCCTCCCTAGCTGGAAGATGAACTACC-GTCTT-GGTAATTTCGTCTTCCGTGCAGGGGACCAAGGGCGTATGGTGAAATGGTGAAATGGAACAAGGT-----------------GATGCCGAGTCTT--TCTTTAGTTTGGCGACTTT-AT--TCTGACTCTAC--
#=GS CrySki/62-286 DE BCHT01000013.1:249921-250206 Cryptococcus skinneri DNA, scaffold: scaffold_12, strain: JCM 9039, whole genome shotgun sequence
CrySki/62-286                TTTTCATGATGAG-----AACCGATGACGAGGACGTA--------CTCCTCACCCGGCTTCCTTAGAGGCGCTCATACCACCTCATCCCGACCTGTACGTCGTTCCCC-GTTCT-GGGGGACGAAGTATGGTGTCCTCGCGCGGATGGGGAGTCATGGTATGAACTTCTCTTGGGAGACTGGACCTGGGGGG----GATGCCGAAGTTATTTACT-AGTTTGGCGACTTT-ATTCTCTGAAATTGC--
#=GS CutOle/17-232 DE JZUH01000083.1:123292-123523 Cutaneotrichosporon oleaginosum strain IBC0246 CC85scaffold_52_Cont83, whole genome shotgun sequence
CutOle/17-232                CGCGAATGATGA-------CACGATGACGAGACCTACG-TGCCCCTCGCGCGCA-GTCTGCCCACCCCTCGTCCCCGTGTGCA-AAGCTCTTGGCCCCCACCACGTCC-GTTTT-GGCCGTGG-CGGGTCGGGTGTGGCGTGCTCGGGACTC-GGCGGGGGCGACGGCGGCTGTGCGCGGGCGGCA---------GGTTGACGAT---CCTCACT-AGTTTGGCGACTTT-AT--TCTGACGCGCT--
#=GS CutArb/11-231 DE BEDW01000015.1:201108-201338 Cutaneotrichosporon arboriformis DNA, scaffold: scaffold_15, strain: JCM_14201, whole genome shotgun sequence
CutArb/11-231                GGCGAATGATGA-------CACGATGACGAGACCTAC-GCGCCCGGCGTGTGCGTCGTCGTCGCCTGCCCGTCCCCGCGCACACACGCGCTCGGCGCTCTCCACGTCC-GTTTT-GGCCGTGGGTGCGTTTGGTGCTGCGTGTGCGGGAATCTGGCGGACGGGTGGCGTGGCGTGCGTGCCGGTGC--------AGGCAGACGAT---CTCCACT-AGTTTGGCGACTT--ATT-TCTGACGCCCC--
#=GS DroMel/1-113 DE Drosophila_melanogaster snoRNA:Me18S-A1576 http://snoopy.med.miyazaki-u.ac.jp/snorna_db.cgi?mode=sno_info&id=Drosophila_melanogaster300049
DroMel/1-113                 CTCAAATGATGA------AACAGATGACGAGACTGAAG----------------------------------------------GAACAAATTCTCGACTTGGCGCTGTATTTTTCAGTGCCTCGTTATATATTTGTTC------------------------------------------------------ATTTAAGATGA--------------TTCGGCGAT---------CTGATG------
Annot-SacCer/1-33            -----RTGATGA--------AUCUACUGCUC-CTGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------RTGATGA--------------------------------CTGA--------
#=GS SacCer-snR75/1-89 DE Saccharomyces_cerevisiae snR75 http://snoopy.med.miyazaki-u.ac.jp/snorna_db.cgi?mode=sno_info&id=Saccharomyces_cerevisiae300014
SacCer-snR75/1-89            ---TTATGATGAGATATTTATAGATGACGAGTCTGATCA-----------------------------------------------------------------------TTC------------------------------------------------------------------------------------GTGAAGAC-ACAACTATTAAAATTACCATTCATGCCTTTCTGAAGCTGTTT
#=GS SNORD15A/1-148 DE 28S:A3764 Homo_sapiens SNORD15A http://snoopy.med.miyazaki-u.ac.jp/snorna_db.cgi?mode=sno_info&id=Homo_sapiens300741
SNORD15A/1-148               CTTCGATGAAGAG-------ATGATGACGAGTCTGACTTG-----------------------------GGGATGTTCTCTTTGCCCAGGTGGCCTACTCTGTGCTGC-GTTCT-GTGGCACAGTTTAAAGAGCCCTGGTTGAAGTAATTTCCT------------------------------------------AAAGATGACT-----------------TAGAGGCATTTGTCTGAGAAGG---
#=GS SNORD15/1-146 DE Gasterosteus_aculeatus SNORD15 http://snoopy.med.miyazaki-u.ac.jp/snorna_db.cgi?mode=sno_info&id=Gasterosteus_aculeatus300118
SNORD15/1-146                CTTCAGTGATGA-------TACGATGACGAGACGGAAT---------------------------------AAGGCTCCAGTTCTGTGGGTTACTGGTTCAGGTCCAC-GTCCT-GTGGTTCGGCTCCAGTTCCTCAGACCAGGAAGTCTT----------------------------------------CTTCTCATGAAGACA-----------------CAGAGGCATTTGTCTGAGAAGG---
#=GS SNORD15B/1-146 DE 28S:A3764 Homo_sapiens SNORD15B http://snoopy.med.miyazaki-u.ac.jp/snorna_db.cgi?mode=sno_info&id=Homo_sapiens300742
SNORD15B/1-146               CTTCAGTGATGA-------CACGATGACGAGTCAGAA-----------------------------------AGGTCACGTCCTGCTCTTGGTCCTTGTCAGTGCCAT-GTTCT-GTGGTGCTGTGCACGAGTTCCTTTGGCAGAAGTGTCCT---------------------------------------ATTTATTGATCGATT----------------TAGAGGCATTTGTCTGAGAAGG---
#=GS AegTau-snoZ101/1-97 DE Aegilops_tauschii snoZ101 http://snoopy.med.miyazaki-u.ac.jp/snorna_db.cgi?mode=sno_info&id=Aegilops_tauschii300641
AegTau-snoZ101/1-97          -----TTGATGC---------AGATGACGAGACACAA-----------------------------------------------------------GTTTTATGGGTA--TTT--TGCGTCTGAGGC----------------------------------------------------------------ATCTCTGTGATGTCACACCC---------TTTTCACCTTGGAGATCTGATGCATGC-
#=GS OrySat-snoZ101/1-100 DE Oryza_sativa snoZ101 http://snoopy.med.miyazaki-u.ac.jp/snorna_db.cgi?mode=sno_info&id=Oryza_sativa300092
OrySat-snoZ101/1-100         -----ATGATGC---------AGATGAGGAGGCACAAG----------------------------------------------------------ATTTAATGGGTA--ATT--TGCGTCTGAGGC----------------------------------------------------------------ATCTCTGTGATGTCACACCC--------TTTTTCACCTTGGAGATCTGATGCATCTA
#=GC SS_cons                 -------------.....-----------------------------------------(((---------------((((------((((((------------(((-------)))---------------))))))------))))------------------------)))------------------------------------------------------------------------
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