snR45-II¶
snR45-II_processed-boxCDsnoRNA-154nt-as-CNAG_12486
Within dedicated transcript
C. neoformans Tremellomycetes snR45-II
Conserved stem-loop can rearrange to form another helix with conserved elements 5'-GCCGYCYGGCRRCC and 5'-GGYYGCAR
Base-pairing of the third conserved element, 5'-CCTTGTT, controls this rearrangement and can form a snR45-like guide sequence complementary to 18S rRNA: aacaagg
Possibly this snoRNA regulates or contributes to Kre33/snR45-function (see snR45-U13/U3a)
Insets: proposed base pairing between the 3’ region of 18S rRNA and yeast snR45 (from [Sharma-2017])
>AE017344.1:416342-416495 Cryptococcus neoformans var. neoformans JEC21 chromosome 4 sequence TTAAAAAATGATGATACACCTCGGTTGCAGAGACCTGAACCTCGCGCCCCGTGTTCACAAGAACCCGGGT TGATGCGATGGATCGTGACTTCTGCCGTCCGGCAACCACAATCCTTGTTATTATAGGGACGGTTGTATTT ACGGTCTGAACCTT
Image source:
# STOCKHOLM 1.0
#=GF RW van Nues, June 2023
#=GF https://coalispr.codeberg.page/paper
#=GS snR45-II/1-154 DE 154nt ncrna 4:416341:416495:1
snR45-II/1-154 TTAAAAAATGATGATA-----CACCTCGGTTGCAGAG----ACCTGAA------------CC------TCGCG--C------------CCCGTGTTC-ACAA-GAACCC--GGG--------------TTGA----TGCGA--T--GG---A-------------TCG-TGAC-------TTCTGCCGTCCGGCAACCACAA--TCCTTGTTATTA--TAGGGACGGTTGTATT---TACGGTCTGAACCTT
#=GS H99-CNAG_12486/30-183 DE CP003824.1:c1418054-1417747 Cryptococcus neoformans var. grubii H99 chromosome 5, complete sequence
H99-CNAG_12486/30-183 TTAAAAAATGATGATA-----CACCTCGGTTGCAGAG----ACCTGAA------------CC------TCGCG--C------------CCTGTGTTC-CCAA-GAACCC--GGG--------------TTGA----TGCGA--T--GG---A-------------TCG-TGAC-------TTCTGCCGTCCGGCAACCACAA--TCCTTGTTATTA--TAGGGACGGTTGTATT---TACGGTCTGAACTTT
#=GS WM276/29-183 DE CP000289.1:879431-879742 Cryptococcus gattii WM276 chromosome D, complete sequence
WM276/29-183 TTAAAAAATGATGATA-----CTCCTCGGTTGCAGAG----ACCTGAA------------CC------TCGCG--C------------CCCCTGTTCACAAA-GAACCT--GGG--------------TTGA----TGCGA--T--GG---A-------------TCG-TGAC-------TTCTGCCGTCCGGCAACCACAA--TCCTTGTTATTA--TAGGGACGGTTGTAT-A--CACGGTCTGACCCTT
#=GS R265/30-184 DE CP025760.1:834418-834727 Cryptococcus gattii VGII R265 chromosome 2, complete sequence
R265/30-184 TTAAAAAATGATGATA-----CTCCTCGGTTGCAGAG----ACCTGAA------------CC------TCGCG--C------------CCCGTGTTCACAAA-GAACAC--GGG--------------TTGA----TGCGA--T--GG---A-------------TCG-TGAC-------TTCTGCCGTCCGGCAACCACAA--TCCTTGTTATTA--TAGGGACGGTTGTAT-A--CACGGTCTGACCCTT
#=GS CryWin/30-182 DE CP034269.1:504081-504399 Cryptococcus wingfieldii strain CBS7118 chromosome 9, complete sequence
CryWin/30-182 TAAAAACATGATGAT-----CCCCCTCGGTTGCAGAG----ACCTGAA------------CCT------CGCG--C------------CCCG--TCC-ATCC-GGG--C--GGG--------------TAGACA--TGCG---T-AGG---A-------------TCG-TGAC-------TTCTGCCGTCCGGCAGCCAAA---TCCTTGTTAACA--TAGGGACGGCTCCATTAT-TACGGTCTGACTCTT
#=GS KwoShan/30-198 DE NQVO01000010.1:c445835-445500 Kwoniella shandongensis strain CBS 12478 scaffold00010, whole genome shotgun sequence
KwoShan/30-198 TAAAGAAATGATGATAA-TCCTCTTTAGGTTGCAGAG----AGATGAT-TTAA------CCC------TCGC-TCCT------CA----TCATCGT-AAAAA---ATGA--TGG----GT--------CGTATAC--GCGA--T--GGG----------------ATA-AGAT-------ATCTGCCGTCCGGCAATCGCAT--ACCTTGTTAAAA--TAGGGACGGTTGTTGGT--CATGGTCTGACTCTA
#=GS KwoDej/32-192 DE ASCJ01000011.1:c3281-3045 Kwoniella dejecticola CBS 10117 cont1.11, whole genome shotgun sequence
KwoDej/32-192 CGCAGAAATGATGATA----CCTCCTCGGCAGCAAAG----ATATGAA---A--------CC------TCGC--------T--C----CTCTCTTC-AAAAA--GATCA--GAG----T---A-----AAGAT----GCGA--T--GG---GA------------TCA-AGAT-------ATCTGTCGTTCGGCAGCCAACT-TACCTTGTTATCA--AAGGGACGGCTATGAATA-CACGGTCTGACTCCT
#=GS KwoBes/33-191 DE ASCK01000013.1:c1417884-1417649 Kwoniella bestiolae CBS 10118 cont1.13, whole genome shotgun sequence
KwoBes/33-191 TAAAGAAATGATGACA----CCTCCTCGGCAGCAAAG----ATATGAA---A--------CC------TCGCT--C------------CTCTTCTC--AAAA--GATTA--GAG-------------TGTGA----AGCGA--T--GG---GG------------TCA-GGAT-------ATCTGTCGTTCGGCAGCCAACT-TACCTTGTTATCA--AAGGGACGGCTATGAATA-TACGGTCTGACTCCT
#=GS KwoMan/31-191 DE ASQF01000011.1:355135-355360 Kwoniella mangroviensis CBS 8886 cont1.11, whole genome shotgun sequence
KwoMan/31-191 TATAGAAATGATGATA----CCTCCTCGGCAGCAAAG----ATATGAA---A--------CC------TCGCT--C------------CTCTCCTT-ATAAAC-GGGAA--GAG-------------TATGA----AGCGA--T--GG---GA------------TCA-GGAT-------ATCTGTCGTTCGGCAGCCAAAT-TACCTTGTTATCA--AAGGGACGGCTATGAATA-TACGGTCTGACTCCT
#=GS KwoHev/16-192 DE ASQC01000084.1:138548-138765 Kwoniella heveanensis CBS 569 cont2.84, whole genome shotgun sequence
KwoHev/16-192 TAAAGAAATGATGACTA-----CCCTCGGCAGCAGAG----ATATGT---C--AAAAG--CCA---CCGCTC-----CCCT--CC----TCTTT----CTCG----AAA--GA------T--AGGG--TTAAA----GAGC-TT--GG--AGGT-CTTCTT--T--CA-TGAT-------ATCTGTCGTCCGGCTGCCAAAT-TACCTTGTTATCA--AAGGGACGGCTATGATTGATACGGTCTGACTCCA
#=GS CrySki/30-158 DE BCHT01000016.1:46617-46960 Cryptococcus skinneri DNA, scaffold: scaffold_15, strain: JCM 9039, whole genome shotgun sequence
CrySki/30-158 TTAAGAAAGGATGACA-----CTCCTCGGCTGCAGAG----AGATGA-------------CTGG--A---------------------GCCT------TCG-------A--GGC----------------G-------------CCAG------------------GT-TGAC-------ATCTGCCGTCCGGCAGCCGCAA--TCCTTGTTTAA---TAGGGACGGCTT-GGCT-TTTTGGTCTGACTCT-
#=GS CryFag/30-162 DE BCHU01000012.1:c881259-880900 Cryptococcus fagi DNA, scaffold: scaffold_11, strain: JCM 13614, whole genome shotgun sequence
CryFag/30-162 TTAAGAAAGGATGACA-----TTCCTAGGCTGCAGAG----AGATGA-----------CTAAAG--A---------------------------TC--GTTA--GA------------------------GA------------CTTTAG----------------GT-TGAC-------ATCTGCCGTTCGGCAGCCACAA--TCCTTGTTTAAA--TAGGGACGGCTTTTGCT-ATTTGGTCTGACTCT-
#=GS SaiPod/30-185 DE RSCD01000011.1:987700-988040 Saitozyma podzolica strain DSM 27192 scaffold_11, whole genome shotgun sequence
SaiPod/30-185 TCCACACATGATGAC----TTTTCCGAGGCCGCAGAG----AGTCGA--------------CG---C-GAGC-CCG-GGGAGG---------TTGT--GCAA--GCAG-----------C-CCTCCC---GAGTC--GCTC----CG-------------------GA-GGAC-------ATCTGCCGTTCGGCGGCCGCAA--TCCTTGTTAACA--AAGGGACGGCATATCA---CACGGTCTGATCCAC
#=GS TreMes/72-209 DE AFVY01000234.1:c699442-699183 Tremella mesenterica DSM 1558 strain Fries TREMEscaffold_7_Cont234, whole genome shotgun sequence
TreMes/72-209 AGTCAAAAGGATGACA-----TTCCAAGGTCGCAGAG----AGTTGAA-------------CGG--T--GTC---A---------------CTCGT---TT---ACGAG---------------------GTG----GAC----CCG----------------G--CG-AGAC-------ATCTGCCGTCTGGCGGCCAAATT-TCCTTGTTATTA--AAGGGACGGC-ACGA-----ACGGTCTGATCATA
#=GS TreYok/25-183 DE BRDC01000025.1:c591597-591377 Tremella yokohamensis NBRC 100148 DNA, KCNB35TY.25, whole genome shotgun sequence
TreYok/25-183 AGTACACGGGATGACA-----CTCCTCGGCCGCAGAG----CGTTGA-------------CCGG--C--GCC---A--CCGT-C---CTC-TTCTCC--AA---GGAGAACGAG-------GCGG-----GTG----GGC----CCGG------------------GC-GGAC-------ATCTGCCGTCTGGCGGCCAAACT-ACCTTGTTATAA--AAGGGACGGCTATGAGAA-TACGGTCTGATTC--
#=GS TreFuc/6-163 DE BRDD01000130.1:111156-111366 Tremella fuciformis NBRC 9317 DNA, KCNB80TF.130, whole genome shotgun sequence
TreFuc/6-163 AGTACACGGGATGACA-----CTCCTCGGCCGCAGAG----CGTTGA-------------CCGG--C--GCC---A--CCGC----TCTCT--CTCC--AC---GGAG--CAGGGG-----GCGG-----GTG----GGC----CCGG------------------GC-GGAC-------ATCTGCCGTCTGGCGGCCAAACC-ACCTTGTTATAA--AAGGGACGGCTATGAGAA-TACGGTCTGATTC--
#=GS TreTag/37-194 DE CAJHEQ010000019.1:22858-23090 MAG: Tremellales sp. Tagirdzhanova-0007 genome assembly, contig: TREM_19, whole genome shotgun sequence
TreTag/37-194 TAAAGAAATGATGACAA---CACCCCTGGTCGCAGAG----AGATGAC--------------GG----TTTC-----CCCGAT------AC-GCG--TCTTCT---CGC--GT--------TCGGG---TT------GAAG--ATC-----A-------------GAG-TGAC-------ATCTGCCGTCTGGCGGCCGCTAC-TCCTTGTTACAA--AAGGGACGGCTGGAAAA--AAAGGTCTGACTATA
#=GS HofCor/28-172 DE BCIJ01000045.1:c69326-69105 Holtermannia corniformis DNA, scaffold: scaffold_44, strain: JCM 1743, whole genome shotgun sequence
HofCor/28-172 ATATACCAGGATGACA----CCTCCCCGGCAGCAGCG----AGATGAC--G------------GCG--CCGC---A---------------GGCTC---TC----GGGCC--------------------C------GCGG----CGT---A-------------GCA-AGAC-------ATCAGCCGTCCGGCAGCCACCC-TACCTTGTTACAC-ATAGGGGCGGCTTATC--ACAGAGGGCTGACTTGT
#=GS HolNya/37-178 DE BCIT01000002.1:1505948-1506153 Holtermanniella nyarrowii DNA, scaffold: scaffold_1, strain: JCM 11471, whole genome shotgun sequence
HolNya/37-178 ATATACCAGGATGACA----CCTCCTCGGCAGCAGCG----CGATGACA-T-----T------GCG--TCGA---------------------CCT---TC----GGG-----------------------------TCGA----TGC---TC-----------TGCT-TGAC-------ATCAGCTGTCCGGCAGCCACCC-TACCTTGTTACAC-ATAGGGGCAGCTTAAC---CACAGGTCTGACTTTA
#=GS VanFra/32-170 DE BEDY01000002.1:c496612-496401 Vanrija fragicola DNA, scaffold: scaffold_2, strain: JCM 1530, whole genome shotgun sequence
VanFra/32-170 TTTAGAAAAGATGACA-----CTCCACGGCCGCAGCG----ATTCGA----------------CTG--TGCC----------------CCG-CCCT---TC----GGGG--TGG---------------AGC-----GGCA----CGG------------------GT-AGAC-------ATCAGCCGCCCGGCGGCCACCC--TCCTTGTTAACA--AAGAGGCGGCACT------TATGGTCTGACTAAA
#=GS VanHum/32-164 DE QKWK01000004.1:c1301542-1301337 Vanrija humicola strain CBS 4282 CBS4282_scaffold04, whole genome shotgun sequence
VanHum/32-164 TTTAGAAATGATGACA-----CTCCGCGGCCGCAAGT----ATTCGA----------------CTG--CGCC--CG----------------GCCC---TC----GGGC--------------------AGCGA---GGCG----CAG------------------AG-AGAC-------ATCAGCCGCCCGGCGGCCACCA--TCCTTGTTTTAA---AGGGGCGGTGG---------GGGTCTGACTATT
#=GS CutDas/22-153 DE BEDX01000002.1:c798241-798047 Cutaneotrichosporon daszewskae DNA, scaffold: scaffold_2, strain: JCM_11166, whole genome shotgun sequence
CutDas/22-153 TTTACGAATGATGACA-----CTCCGCGGCCGCAGGT----GTTTGA----------------CTG--CGCC---------------------CCC---TAC---GGG--------------------AAGC-----GGCG----CAG------------------AT-TGAC-------AGCAGCCGTCCGGCGGCCACCC--TCCTTGTTATAA---AGGGGCGGCAAA------TATGGTCTGAGTCAA
#=GS PasPL2/23-165 DE JAMFRE010000112.1:c25106-24910 Pascua sp. PL2904B ctg_112, whole genome shotgun sequence
PasPL2/23-165 TTTAGAAAGGATGACT-----CTCCGCGGCCGCAGCG----ATTCGA----------------CCCTGCC---------CC-------GCG-CCGC---TT----GCGG--CGT---------GG-----CGT----GGCT----CGG------------------AC-TGAC-------ATCAGCCGCCCGGCGGCCACCC--TCCTTGTTAAAA--AAGGGGCGGCGGT------TATGGTCTGACTAAA
#=GS NaeAur/30-179 DE JAKFAO010000011.1:c814900-814536 Naematelia aurantialba strain NX-20 Contig11, whole genome shotgun sequence
NaeAur/30-179 TAAAAATATGATGACA-----TTCCCTGGCCGCAGAG----CGTTGAC--------------CGTC--TC--------CCC--G-----CG--TCT--CTTT---AGA--GCG------A---GGG----TC-----GA----A-GACG--A-------------GCG-AGAC-------ATCTGCCGTCTGGCGGCCACCA--TCCTTGTTATAA--AAGGGACGGCTAATTCA--CACGGTCTGACTCC-
#=GS NaeEnc/9-157 DE MCFC01000127.1:c16308-16100 Naematelia encephala strain 68-887.2 BCR39scaffold_127, whole genome shotgun sequence
NaeEnc/9-157 TACAAACATGATGACA-----TTCCTCGGCCGCAGAG----CGTTGAC--------------CGTC--TC--------CCC-------CTG--TCT--CTTC---GGA--GCGG---------GGG----TC-----GA----A-GACG--A-------------GCG-AGAC-------ATCTGCCGTCTGGCGGCCACCC--TCCTTGTTATAA--AAGGGACGGCTTATTCA--CACGGTCTGACTC--
#=GS BulAlb/25-191 DE CAMYTR010000014.1:c110493-110268 Bullera alba genome assembly, contig: jcf7180000012106, whole genome shotgun sequence
BulAlb/25-191 TAAAGAAATGATGACAA-----CCCACGGTCGCAAAG----AGTTGAC--GA----------GCTC------------CCCTG------TATCCGCA-CTTGT-TGCGGGTTA--------TGGGG--TGCACAA-------AC-GAGC-CA-------------GTA-TGAC-------ATCTGTCGTCCGGCGACCAAACC-TCCTTGTTACCA--AAGGGACGGCTATGACGGA-ACGGTCTGACTCAA
#=GS KocImp/20-183 DE NBSH01000014.1:c210608-210381 Kockovaella imperatae strain NRRL Y-17943 BD324scaffold_14, whole genome shotgun sequence
KocImp/20-183 TCAAGAAATGATGACAA----CTCCACGGTCGCAAATT---AGTTGAC--GA----------GCTC------------CCGGGTTT-----CCCTC--TCTT---GGGTG--------TTTCTCGG---TATT------------GAGC-CA-------------GTC-TGAC-------ATTTGCCGTCTGACGACCAACCTTACCTTGTTATAA--AAGGGACGGCTAGGAGATGAACGGTCTGACTCCA
#=GS PapLau/23-175 DE JDSR01000087.1:c21511-21302 Papiliotrema laurentii RY1 contig_92, whole genome shotgun sequence
PapLau/23-175 TTTACAAATGATGACG-----TTCCAAGGCCGCAGAATA--TCTTGAC--C-----------GCTC------------CCCGA-A-------CCCC--TCGC---GGGG----------A-TCGGG----TC-------------GAGC-CA-------------GAG-TGAC-------ATCTGCCGTCTGGCGGCCACCA-TTCCTTGTTACCA--AAGGGACGGCTATGAACA-TACGGTCTGACTCGA
#=GS PapTer/30-174 DE JAHXHD010001055.1:26587-26974 Papiliotrema terrestris strain LS28 scaffold-1054, whole genome shotgun sequence
PapTer/30-174 TTTGAAAATGATGAC-----TCTCCATGGCCGCAGAATATTCGTCGAC--A-----------GCTC------------CTT------------CGT---TC----GCG---------------GAG----TC-------------GAGC-CA-------------GTG-TGAC-------TTCTGCCGTCTGGCGGCCAACT-CTCCTTGTTACCA--AAGGGACGGCTATGACTA-TACGGTCTGACTCAT
#=GS CryFla/30-174 DE CAUG01000078.1:c10655-10300 Cryptococcus flavescens NRRL Y-50378 WGS project CAUG00000000 data, contig NODE_110_length_58760_cov_47_189636, whole genome shotgun sequence
CryFla/30-174 TTTGAAAATGATGAC-----TCTCCATGGCCGCAGAATATTCGTCGAC--A-----------GCTC------------CTC------------CGT---CC----GCG---------------GAG----TT-------------GAGC-CA-------------GTA-TGAC-------TTCTGCCGTCTGGCGGCCACAT-CTCCTTGTTACCA--AAGGGACGGCTATGACTA-TACGGTCTGACTCAT
#=GS DioCroc/70-228 DE BCKK01000002.1:1409626-1409895 Dioszegia crocea DNA, scaffold: scaffold_1, strain: JCM 2961, whole genome shotgun sequence
DioCroc/70-228 TATGAGAATGATGACAA----CCCCAAGGTCGCAGAG----CGTTGAC--------------GCG-A-GCCAT-----CTT--GA------CTCTC--TACG---GAGGG--------AA---GGG---AAA----GTTGC--A--CGC-CTC------------GAA-TGAC-------ATCTGCCGTCTGGCGACCACCC--TCCTTGTTATAA--AAGGGACGGCT-T-ATTA-TACGGTCTGATCAC-
#=GS DioHun/35-194 DE JAKWFO010000005.1:c1081551-1081329 Dioszegia hungarica strain PDD-24b-2 MKK02contig_8, whole genome shotgun sequence
DioHun/35-194 TATGAGAATGATGACA----CCTCCTTGGTCGCAGTG----CGTTGAC--------------GCG-A-GCCAT-----CCT--AA------GCTTC--TACG---GAGGC--------GC---GGG---AAA----GTTGC--A--CGC-TATT-----------GAA-TGAC-------ATCTGCTGTCCGGCGACCACCC--TCCTTGTTATAA---AGGGACGGCTTACCG---TATGGTCTGATCACC
#=GS DioAur/18-178 DE BCKN01000002.1:323460-323675 Dioszegia aurantiaca DNA, scaffold: scaffold_1, strain: JCM 2956, whole genome shotgun sequence
DioAur/18-178 TATGAGAATGATGACAA----CTCCAAGGTCGCAGAG----CGTTGAC--------------GCG-A-GCCAT-----CCC--GA------CTTTC--TACG---GAATG--------GA---GGG---AAA----GTTGC--A--CGC-CTCA-----------GAA-TGAC-------ATCTGCCGTCTGGCGACCACCC--TCCTTGTTATAA--AAGGGACGGCTTATCA---TACGGTCTGATCACT
#=GS CutOle/91-216 DE QKWL01000002.1:c1673947-1673689 Cutaneotrichosporon oleaginosum strain ATCC 20508 ATCC20508_contig02, whole genome shotgun sequence
CutOle/91-216 TAAACAAGTGATGACA-----CCCCACGGCCGCAGGT----ATTCGAC-------------TGC----ACCC--------------------------CTCGA----------------A-----------------GGGT------GCA---------------GGT-GGACAGA-------AGCCGCCCGGCGGCCACCC--TCCTTGTTATA---AAGGGGCGGCGC-------TTAGGTCTGAGTCAC
#=GS CutMuc/57-183 DE BCJT01000028.1:108185-108399 Cutaneotrichosporon mucoides DNA, scaffold: scaffold_27, strain: JCM 9939, whole genome shotgun sequence
CutMuc/57-183 TTTAAAAGTGATGACAA----CCCGCTGGCCGCAGGT----ATTCGAC-------------TGC----GCC------------------------C--CTCGT--G-------------------------C------GGC------GCA---------------GGT-AGACAGC-------AGCCGCCCGGCGGCCAACC--TCCTTGTTATA---AAGGGGCGGCAC-------CCAGGTCTGAGTCAC
#=GS TriPor/30-161 DE BCJG01000001.1:5042955-5043181 Trichosporon porosum DNA, scaffold: scaffold_0, strain: JCM 1458, whole genome shotgun sequence
TriPor/30-161 TTTAGAAAGGATGACA-----CTCCGCGGCCGCAGCT----ATTCGAC-------------TGC----GCC-----------------------CC--TACGC--GG------------------------C------GGC------GCA---------------GGC-AGACATC-------TGCCGCCTGGCGGCCACCC--TCCTTGTTAACA--AAGAGGCGGCAAACG----CACGGTCTGACTCTA
#=GS ApiSia/16-145 DE JALJEG010000002.1:208146-208365 Apiotrichum siamense strain L8in5 NODE_2_length_848724_cov_10.959104, whole genome shotgun sequence
ApiSia/16-145 TTTAGAAAAGATGACA-----CTCCGCGGCCGCAGTA----CTTCGAC-------------TGT----GCC-----------------------TC--TACGT--GA------------------------T------GGC------GCA---------------GGC-AGACAGA-------AGCCGCCCGGCGGCCACCC--TCCTTGTTATTA--AAGGGGCGGCAAC------CACGGTCTGACTAAA
#=GS CutCut/16-145 DE LTAL01000342.1:c15707-15538 Cutaneotrichosporon cutaneum strain ACCC 20271 contig342, whole genome shotgun sequence
CutCut/16-145 TTTAGAAAGGATGACA-----CTCCGCGGCCGCAGCA----CTTCGAC-------------TGC----GCC-----------------------TC--TACGT--GA------------------------T------GGC------GCA---------------GGC-AGACAGA-------CGCCGCCCGGCGGCCACCC--TCCTTGTTAATA--AAGGGGCGGCATT------TACGGTCTGACTAAA
#=GS ApiBra/57-185 DE JAMALJ010000019.1:389741-389960 Apiotrichum brassicae strain M2204 ctg_19, whole genome shotgun sequence
ApiBra/57-185 TTTAGATAGGATGACA-----CTCCACGGCCGCAGCA----TTTCGAC-------------TGC----GCC-----------------------TC--TACGT--GA------------------------C------GGC------GCA---------------GGC-AGACAGC-------AGCCGCCCGGCGGCCACCC--TCCTTGTTATTA--AAGGGGCGGCAT-------TACGGTCTGACTAAA
#=GS TriVee/30-159 DE BCKJ01000010.1:80114-80466 Trichosporon veenhuisii DNA, scaffold: scaffold_9, strain: JCM 10691, whole genome shotgun sequence
TriVee/30-159 TTTAGAAAGGATGAC-----TCTCCATGGCCGCAGGT----TTTCGAC-------------TGC----GCC-----------------------TC--TACGT--GA------------------------C------GGC------GCA---------------GGC-AGACAGA-------CGCCGCCCGGCGGCCACCC--TCCTTGTTATTA--AAGGGGCGGCATT------TACGGTCTGACTAAA
#=GS ApiAki/77-205 DE PQXP01000019.1:c85621-85372 Apiotrichum akiyoshidainum strain HP2023 Contig1040, whole genome shotgun sequence
ApiAki/77-205 TTTAGAAAGGATGACA-----CTCCACGGCCGCAGCT----CTTCGAC-------------TGC----GCC-----------------------TC--TACGT--GA------------------------C------GGC------GCA---------------GGC-AGACAGA-------CGCCGCCCGGCGGCCACCC--TCCTTGTTATTA--AAGGGGCGGCAT-------TACGGTCTGACTAAA
#=GS TriLai/37-165 DE BCKV01000003.1:1448239-1448448 Trichosporon laibachii DNA, scaffold: scaffold_2, strain: JCM 2947, whole genome shotgun sequence
TriLai/37-165 TTTAGAAAGGATGACA-----CTCCACGGCCGCAGCT----CTTCGAC-------------TGC----GCC-----------------------TC--TACGT--GA------------------------C------GGC------GCA---------------GGC-AGACAGA-------CGCCGCCCGGCGGCCACCC--TCCTTGTTATTA--AAGGGGCGGCAT-------TACGGTCTGACTAAA
#=GS TriOvo/50-187 DE WEIQ01000015.1:19000-19219 Trichosporon ovoides strain 2NF903A scaffold15-size876824, whole genome shotgun sequence
TriOvo/50-187 GTAAGAAAAGATGACAA---TCCCAAAGGCCGCAATT----CTCTGAC-------------ATA----GCC-----------------------CG--CCCA---CG---------------------GGAAGTT---GGC------TAT---------------GCG-TGAT-------ATCTGCCGCCCGGCGGCCGACC--TCCTTGTTATA---ATGGGGCGGTTTCGC----TACGGTCTGACTAAA
#=GS TriInk/70-207 DE QAYW01034232.1:23-264 Trichosporon inkin strain C-2155 NODE_34294_length_312_cov_1.56596_ID_297847, whole genome shotgun sequence
TriInk/70-207 GTAAGAAAAGATGACAA---TCCCAAAGGCCGCAACT----CTCTGAC-------------ATA----GCC-----------------------CGC--CT---GCG---------------------GGAAGTT---GGC------TAT---------------GCG-TGAT-------ATCTGCCGCCCGGCGGCCGACC--TCCTTGTTATA---ATGGGGCGGTTTCGC----TACGGTCTGACTCAA
#=GS TakKor/25-177 DE BCKT01000002.1:1878499-1878691 Takashimella koratensis DNA, scaffold: scaffold_1, strain: JCM 12878, whole genome shotgun sequence
TakKor/25-177 GGATCAAGACTTGACAAG-----CCGCGAAAGTGTGC---AGGTTGA---G----------TCTTT--GT---GCGG----------------ACC---GAG---GG-----------T-----------GGG------GC----AAAGA-------------A--CG-TGA-CGAGAC-ATCTGCCGCTCGGCAGCCAAAT-CTCCTTGTTACTCCATAGGGGCGGCTTTGAGCTTGATGGTCTGAACCTT
#=GS TakTep/22-175 DE BCKS01000008.1:c358231-358001 Takashimella tepidaria DNA, scaffold: scaffold_7, strain: JCM 11965, whole genome shotgun sequence
TakTep/22-175 AAAATAGAAAATGAT-------TCTTT----GTGCGT--ACCAAGGAG--------------TA--GGGTTC--------TGG-T---------TGA--GA---TCA--------------CCA------AAA----GAGT-GA---TA-GC-------------TCG-TGAATGAGAC-ATCTGCCGCTCGGCAGCCACAT-CTCCTTGTTACCCCATAGGAGCGGCTTTGAACG-CACGGTCTGAAATTT
#=GC SS_cons ---------<<<<----------------------------------((----(((((--((((((--(((((----((((((---(((((((((((-------))))))-)))))-----))))))---------)))))---))))))-----)))-))---))------------------[[[[[[[(((((-----------)))))---------]]]]]]]--------------->>>>-----
#=GF R2R keep allpairs
//
Image source alternative fold:
# STOCKHOLM 1.0
#=GF RW van Nues, June 2023
#=GF https://coalispr.codeberg.page/paper
...
#=GC SS_cons ---------<<<<--------------[[[[[[--------------((----(((((--((((((--(((((----((((((---(((((((((((-------))))))-)))))-----))))))---------)))))---))))))-----)))-))---))--------------------------]]]]]]---------(((((----------)))))---------------->>>>-----
#=GF R2R keep allpairs
//
Input, including flanks:
>snR45-II_boxCDsnoRNA 154nt ncrna 4:416341:416495:1
------------------------------------------------------------------------
------------------TTAAAAAATGATGATA-----CACCTCGGTTGCAGAG----ACCTGAA------
------CC------TCGCG--C------------CCCGTGTTC-ACAA-GAACCC--GGG------------
--TTGA----TGCGA--T--GG---A-------------TCG-TGAC-------TTCTGCCGTCCGGCAACC
ACAA--TCCTTGTTATTA--TAGGGACGGTTGTATT---TACGGTCTGAACCTT------------------
------------------------------------------------------------------------
------------------------------------------------------------------
>pre-boxCDsnoRNA 310nt ncrna 4:416312:416622:1
-------------------------------------------------------------ATTTCTCTTCT
CCTCATCCTTCCAATTCATTAAAAAATGATGATA-----CACCTCGGTTGCAGAG----ACCTGAA------
------CC------TCGCG--C------------CCCGTGTTC-ACAA-GAACCC--GGG------------
--TTGA----TGCGA--T--GG---A-------------TCG-TGAC-------TTCTGCCGTCCGGCAACC
ACAA--TCCTTGTTATTA--TAGGGACGGTTGTATT---TACGGTCTGAACCTT--AATG------------
-------------CTGGAAGGTTGTTTTGTCTTTGGACTGTTGCTTATATATGCTCCGCTTCGATTATTTGT
GCTGCGTGATGGAAAGCATGTTTTTGCGCTCATGCAATGTTGGAA-TGTCCTCCAGCTTGCGTTT-
>H99 CP003824.1:c1418054-1417747 Cryptococcus neoformans var. grubii H99 chromosome 5, complete sequence
-------------------------------------------------------------ATTTCTCTTCT
CCTCATCCTTCCAATTCATTAAAAAATGATGATA-----CACCTCGGTTGCAGAG----ACCTGAA------
------CC------TCGCG--C------------CCTGTGTTC-CCAA-GAACCC--GGG------------
--TTGA----TGCGA--T--GG---A-------------TCG-TGAC-------TTCTGCCGTCCGGCAACC
ACAA--TCCTTGTTATTA--TAGGGACGGTTGTATT---TACGGTCTGAACTTT--AATG------------
-------------CTGGAAGGTGGTT--GTCTTTGGACTGATCCTTATATACGCTCCGCTTCGACTATCTGT
GCTGCGTGATGGAAAAGCATGTTTTGCCCTCATGCAATGTTGGAA-TGTACTGCAGCTTGCGTTT-
>CNAG_12486 expressed-293nt
------------------------------------------------------------------------
----ATCCTTCCAATTCATTAAAAAATGATGATA-----CACCTCGGTTGCAGAG----ACCTGAA------
------CC------TCGCG--C------------CCTGTGTTC-CCAA-GAACCC--GGG------------
--TTGA----TGCGA--T--GG---A-------------TCG-TGAC-------TTCTGCCGTCCGGCAACC
ACAA--TCCTTGTTATTA--TAGGGACGGTTGTATT---TACGGTCTGAACTTT--AATG------------
-------------CTGGAAGGTGGTT--GTCTTTGGACTGATCCTTATATACGCTCCGCTTCGACTATCTGT
GCTGCGTGATGGAAAAGCATGTTTTGCCCTCATGCAATGTTGGAA-TGTACTGCAGCTTGCGTTT-
>WM276 CP000289.1:879431-879742 Cryptococcus gattii WM276 chromosome D, complete sequence
--------------------------------------------------------------GTTTTCTTCT
CCTCATCCTTCCAATTCATTAAAAAATGATGATA-----CTCCTCGGTTGCAGAG----ACCTGAA------
------CC------TCGCG--C------------CCCCTGTTCACAAA-GAACCT--GGG------------
--TTGA----TGCGA--T--GG---A-------------TCG-TGAC-------TTCTGCCGTCCGGCAACC
ACAA--TCCTTGTTATTA--TAGGGACGGTTGTAT-A--CACGGTCTGACCCTTT-AATG------------
-------------CTGGAAGGTTTGTTCTTATCCTTGTACTCTTGATTCTATGCACCGTTTCGACTAGTTGT
ACTGTATCATGCAAAGTCTGTTTTTGTGCCCATGCAATGTGGAAAACGTGCTCAAGCTTGCGTTT-
>R265 CP025760.1:834418-834727 Cryptococcus gattii VGII R265 chromosome 2, complete sequence
-------------------------------------------------------------AGTTCTCTTCT
TCTCATCCTTCCAATTCATTAAAAAATGATGATA-----CTCCTCGGTTGCAGAG----ACCTGAA------
------CC------TCGCG--C------------CCCGTGTTCACAAA-GAACAC--GGG------------
--TTGA----TGCGA--T--GG---A-------------TCG-TGAC-------TTCTGCCGTCCGGCAACC
ACAA--TCCTTGTTATTA--TAGGGACGGTTGTAT-A--CACGGTCTGACCCTTT-AATG------------
-------------CTGGAAGCTTTGTTCTTATCCTTGTACTCTTACTTCTGTGCTCCGC--TG--TACTTGT
ACTGTATCATGCAAAATCTGCTTTTGTGCTCATGCAATGTGGAAAATGTCCTCAAGCTTGCGTTT-
>CryWin CP034269.1:504081-504399 Cryptococcus wingfieldii strain CBS7118 chromosome 9, complete sequence
-------------------------------------------------------------TGCTTCTCTTG
CCTCATCCTTCCAATTCATAAAAACATGATGAT-----CCCCCTCGGTTGCAGAG----ACCTGAA------
------CCT------CGCG--C------------CCCG--TCC-ATCC-GGG--C--GGG------------
--TAGACA--TGCG---T-AGG---A-------------TCG-TGAC-------TTCTGCCGTCCGGCAGCC
AAA---TCCTTGTTAACA--TAGGGACGGCTCCATTAT-TACGGTCTGACTCTTT---GGA-----------
------------TTTGGATAGGAGTATCTCGACTTGATATCAATGTGTATGTACCCCTTGAGCCTCTGCCCT
TTCACCTCGGACGGCCCGACGGAAACATTGGTCTGGGTGGCAGCGGTGGTGGAGAGCGGGCGGATC
>KwoShan NQVO01000010.1:c445835-445500 Kwoniella shandongensis strain CBS 12478 scaffold00010, whole genome shotgun sequence
-------------------------------------------------------------TTCTCTCTTTT
CTCTATCCTTCCTGTTTTTAAAGAAATGATGATAA-TCCTCTTTAGGTTGCAGAG----AGATGAT-TTAA-
-----CCC------TCGC-TCCT------CA----TCATCGT-AAAAA---ATGA--TGG----GT------
--CGTATAC--GCGA--T--GGG----------------ATA-AGAT-------ATCTGCCGTCCGGCAATC
GCAT--ACCTTGTTAAAA--TAGGGACGGTTGTTGGT--CATGGTCTGACTCTATATGAAA-----------
-----------TCAAGGAAGGATTGTGTGTGTCTGTATGTGGAGAGTAATGGCTCTTGTTATGATAAGACAA
TCGGCTTCACCCTCTATGTATAGTCTTGGAGTTGTAAAAGTAGTGCTACCGCTCGACCATGTATA-
>KwoDej ASCJ01000011.1:c3281-3045 Kwoniella dejecticola CBS 10117 cont1.11, whole genome shotgun sequence
-----------------------------------------------------------TTTCGTTACCGAT
GACTGATCGTACGCGCCTCGCAGAAATGATGATA----CCTCCTCGGCAGCAAAG----ATATGAA---A--
------CC------TCGC--------T--C----CTCTCTTC-AAAAA--GATCA--GAG----T---A---
--AAGAT----GCGA--T--GG---GA------------TCA-AGAT-------ATCTGTCGTTCGGCAGCC
AACT-TACCTTGTTATCA--AAGGGACGGCTATGAATA-CACGGTCTGACTCCTTATCGAC-----------
--------------TGGAAGGATTTCTCAAGCAGGACAGAATAGGAATTTGT--------------------
------------------------------------------------------------------
>KwoBes ASCK01000013.1:c1417884-1417649 Kwoniella bestiolae CBS 10118 cont1.13, whole genome shotgun sequence
----------------------------------------------------------TCTTCCACTCTTCC
CCTCAATCCTTCCTTTCATAAAGAAATGATGACA----CCTCCTCGGCAGCAAAG----ATATGAA---A--
------CC------TCGCT--C------------CTCTTCTC--AAAA--GATTA--GAG------------
-TGTGA----AGCGA--T--GG---GG------------TCA-GGAT-------ATCTGTCGTTCGGCAGCC
AACT-TACCTTGTTATCA--AAGGGACGGCTATGAATA-TACGGTCTGACTCCTTATCGA------------
-------------TTGGAAGGGTTTAGTTTGTACGACAGTTGATAGTGAGTG--------------------
------------------------------------------------------------------
>KwoMan ASQF01000011.1:355135-355360 Kwoniella mangroviensis CBS 8886 cont1.11, whole genome shotgun sequence
------------------------------------------------------------TGCGGCTGACAG
AGAGATTCCGTATATTTATATAGAAATGATGATA----CCTCCTCGGCAGCAAAG----ATATGAA---A--
------CC------TCGCT--C------------CTCTCCTT-ATAAAC-GGGAA--GAG------------
-TATGA----AGCGA--T--GG---GA------------TCA-GGAT-------ATCTGTCGTTCGGCAGCC
AAAT-TACCTTGTTATCA--AAGGGACGGCTATGAATA-TACGGTCTGACTCCTTATCGA------------
-------------TCGGAAGGATTTATGTGATATAACTAGAA------------------------------
------------------------------------------------------------------
>KwoHev ASQC01000084.1:138548-138765 Kwoniella heveanensis CBS 569 cont2.84, whole genome shotgun sequence
------------------------------------------------------------------------
---ATTCCTTCCAAGTTTTAAAGAAATGATGACTA-----CCCTCGGCAGCAGAG----ATATGT---C--A
AAAG--CCA---CCGCTC-----CCCT--CC----TCTTT----CTCG----AAA--GA------T--AGGG
--TTAAA----GAGC-TT--GG--AGGT-CTTCTT--T--CA-TGAT-------ATCTGTCGTCCGGCTGCC
AAAT-TACCTTGTTATCA--AAGGGACGGCTATGATTGATACGGTCTGACTCCATACCCAAAGAGAAC----
------------TTTGGAAGGAAA------------------------------------------------
------------------------------------------------------------------
>CrySki BCHT01000016.1:46617-46960 Cryptococcus skinneri DNA, scaffold: scaffold_15, strain: JCM 9039, whole genome shotgun sequence
-------------------------------------------------------------TTGGGATACAC
ACTAACATTACACAGTTTTTAAGAAAGGATGACA-----CTCCTCGGCTGCAGAG----AGATGA-------
------CTGG--A---------------------GCCT------TCG-------A--GGC------------
----G-------------CCAG------------------GT-TGAC-------ATCTGCCGTCCGGCAGCC
GCAA--TCCTTGTTTAA---TAGGGACGGCTT-GGCT-TTTTGGTCTGACTCT----GAGA-----------
------------CAAGGAAGGATCGGGTTGGATGGTGAGAGGCTGGGCTGGGGTGATATGCGGCTGGAGTTG
TTGGTTGTTAGTTGAGGGTGATGGTCAACGGCATATTTAGAGGTTCTTATTGCCGTGAAGATTGT-
>CryFag BCHU01000012.1:c881259-880900 Cryptococcus fagi DNA, scaffold: scaffold_11, strain: JCM 13614, whole genome shotgun sequence
-------------------------------------------------------------TGCACTGACAA
ACCATCCCCCTCTAGTTTTTAAGAAAGGATGACA-----TTCCTAGGCTGCAGAG----AGATGA-------
----CTAAAG--A---------------------------TC--GTTA--GA--------------------
----GA------------CTTTAG----------------GT-TGAC-------ATCTGCCGTTCGGCAGCC
ACAA--TCCTTGTTTAAA--TAGGGACGGCTTTTGCT-ATTTGGTCTGACTCT--AAAAGG-----------
------------CTTGGAATGGAGGTTGTAGTGTGGTTTGATGTAGAGTTGAGCTGGGGTTTGGGTTGTAGA
GTAGTCGATGGAGGAGGAGGGAGGTTGTTAACATCTACTCGGTTTAGTTGGTGCTGAAGGGGAT--
>SaiPod RSCD01000011.1:987700-988040 Saitozyma podzolica strain DSM 27192 scaffold_11, whole genome shotgun sequence
-------------------------------------------------------------CCCATGTCTCT
TCTTCATCCTTCCTTCTATCCACACATGATGAC----TTTTCCGAGGCCGCAGAG----AGTCGA-------
-------CG---C-GAGC-CCG-GGGAGG---------TTGT--GCAA--GCAG-----------C-CCTCC
C---GAGTC--GCTC----CG-------------------GA-GGAC-------ATCTGCCGTTCGGCGGCC
GCAA--TCCTTGTTAACA--AAGGGACGGCATATCA---CACGGTCTGATCCACATCCACATATCCATCCCT
ATTCTCGTCTCGCTTGGAAGGCGCACGGCCACGCAGCGGAGACTTACCATTGGTTTTGTATGCAGGTATCAT
GTTGGTGTCGAGAATACTGTGTCTGTCGTGTTGTCTTACGAGC-----------------------
>TreMes AFVY01000234.1:c699442-699183 Tremella mesenterica DSM 1558 strain Fries TREMEscaffold_7_Cont234, whole genome shotgun sequence
-------------------CGAAACTTTTCTTCATCCTTCCTCATATTGTAAGTCGAACGTCTCATGATCTC
CATCACGTATTGATAAACAGTCAAAAGGATGACA-----TTCCAAGGTCGCAGAG----AGTTGAA------
-------CGG--T--GTC---A---------------CTCGT---TT---ACGAG-----------------
----GTG----GAC----CCG----------------G--CG-AGAC-------ATCTGCCGTCTGGCGGCC
AAATT-TCCTTGTTATTA--AAGGGACGGC-ACGA-----ACGGTCTGATCATA------------------
---------------TGAGGGGGATGATTTGAATCAGTTCTTTTGCTAGATCCTGAGTGTCTGAAA------
------------------------------------------------------------------
>TreYok BRDC01000025.1:c591597-591377 Tremella yokohamensis NBRC 100148 DNA, KCNB35TY.25, whole genome shotgun sequence
------------------------------------------------------------------ACAACC
CCCATGCAGCTGACACGCAGTACACGGGATGACA-----CTCCTCGGCCGCAGAG----CGTTGA-------
------CCGG--C--GCC---A--CCGT-C---CTC-TTCTCC--AA---GGAGAACGAG-------GCGG-
----GTG----GGC----CCGG------------------GC-GGAC-------ATCTGCCGTCTGGCGGCC
AAACT-ACCTTGTTATAA--AAGGGACGGCTATGAGAA-TACGGTCTGATTC----AAAG------------
-------------CAAGAAGGATCATCCTATCACACTGTACTTTGTA-------------------------
------------------------------------------------------------------
>TreFuc BRDD01000130.1:111156-111366 Tremella fuciformis NBRC 9317 DNA, KCNB80TF.130, whole genome shotgun sequence
------------------------------------------------------------------------
-------------CACGTAGTACACGGGATGACA-----CTCCTCGGCCGCAGAG----CGTTGA-------
------CCGG--C--GCC---A--CCGC----TCTCT--CTCC--AC---GGAG--CAGGGG-----GCGG-
----GTG----GGC----CCGG------------------GC-GGAC-------ATCTGCCGTCTGGCGGCC
AAACC-ACCTTGTTATAA--AAGGGACGGCTATGAGAA-TACGGTCTGATTC---AAAAG------------
-------------CAAGAAGGATCATCCCATCACATTGTACATCGTACATTGTACA----------------
------------------------------------------------------------------
>TreTag CAJHEQ010000019.1:22858-23090 MAG: Tremellales sp. Tagirdzhanova-0007 genome assembly, contig: TREM_19, whole genome shotgun sequence
------------------------------------------------------CTTTGTCGATACAAAATC
TGATCCTTCTCATAGTTTTAAAGAAATGATGACAA---CACCCCTGGTCGCAGAG----AGATGAC------
--------GG----TTTC-----CCCGAT------AC-GCG--TCTTCT---CGC--GT--------TCGGG
---TT------GAAG--ATC-----A-------------GAG-TGAC-------ATCTGCCGTCTGGCGGCC
GCTAC-TCCTTGTTACAA--AAGGGACGGCTGGAAAA--AAAGGTCTGACTATATC----------------
-------------TTGGAAGGAGACCAGGATGGGTGTGGAAGATGTTCAT----------------------
------------------------------------------------------------------
>HofCor BCIJ01000045.1:c69326-69105 Holtermannia corniformis DNA, scaffold: scaffold_44, strain: JCM 1743, whole genome shotgun sequence
---------------------------------------------------------------ACCCGGCTG
CACAGCTGACACGCACAGATATACCAGGATGACA----CCTCCCCGGCAGCAGCG----AGATGAC--G---
---------GCG--CCGC---A---------------GGCTC---TC----GGGCC----------------
----C------GCGG----CGT---A-------------GCA-AGAC-------ATCAGCCGTCCGGCAGCC
ACCC-TACCTTGTTACAC-ATAGGGGCGGCTTATC--ACAGAGGGCTGACTTGTA-----------------
---------------TGACTGGAAGCGATGCATGCACATTGTGGTATGATACAGGTTGCGATGC--------
------------------------------------------------------------------
>HolNya BCIT01000002.1:1505948-1506153 Holtermanniella nyarrowii DNA, scaffold: scaffold_1, strain: JCM 11471, whole genome shotgun sequence
------------------------------------------------------CTACACCTCTCCACACCA
GGAAGCTAACAGAACAGTATATACCAGGATGACA----CCTCCTCGGCAGCAGCG----CGATGACA-T---
--T------GCG--TCGA---------------------CCT---TC----GGG------------------
-----------TCGA----TGC---TC-----------TGCT-TGAC-------ATCAGCTGTCCGGCAGCC
ACCC-TACCTTGTTACAC-ATAGGGGCAGCTTAAC---CACAGGTCTGACTTTATACAAC------------
--------------TGGAAGGAAATGTTCTATGCAT------------------------------------
------------------------------------------------------------------
>VanFra BEDY01000002.1:c496612-496401 Vanrija fragicola DNA, scaffold: scaffold_2, strain: JCM 1530, whole genome shotgun sequence
-----------------------------------------------------------GCCTAGTGCCGGA
ACGCTGACAGAGATAGTTTTTAGAAAAGATGACA-----CTCCACGGCCGCAGCG----ATTCGA-------
---------CTG--TGCC----------------CCG-CCCT---TC----GGGG--TGG------------
---AGC-----GGCA----CGG------------------GT-AGAC-------ATCAGCCGCCCGGCGGCC
ACCC--TCCTTGTTAACA--AAGAGGCGGCACT------TATGGTCTGACTAAACATTCCAACA--------
---------------TGCTGGTCTGCATATCGTTCATGTGAATGAGC-------------------------
------------------------------------------------------------------
>VanHum QKWK01000004.1:c1301542-1301337 Vanrija humicola strain CBS 4282 CBS4282_scaffold04, whole genome shotgun sequence
-----------------------------------------------------------AGCAGCAGCAGCA
GCAGCTCACGCCGCAGTTTTTAGAAATGATGACA-----CTCCGCGGCCGCAAGT----ATTCGA-------
---------CTG--CGCC--CG----------------GCCC---TC----GGGC-----------------
---AGCGA---GGCG----CAG------------------AG-AGAC-------ATCAGCCGCCCGGCGGCC
ACCA--TCCTTGTTTTAA---AGGGGCGGTGG---------GGGTCTGACTATTCG----------------
-----------TGGGGGATGGGTATTTCGAGGGCGGGAGGAGGGCGAGCGG---------------------
------------------------------------------------------------------
>CutDas BEDX01000002.1:c798241-798047 Cutaneotrichosporon daszewskae DNA, scaffold: scaffold_2, strain: JCM_11166, whole genome shotgun sequence
---------------------------------------------------------------------GAA
AGCATACACTGACATTAGTTTACGAATGATGACA-----CTCCGCGGCCGCAGGT----GTTTGA-------
---------CTG--CGCC---------------------CCC---TAC---GGG------------------
--AAGC-----GGCG----CAG------------------AT-TGAC-------AGCAGCCGTCCGGCGGCC
ACCC--TCCTTGTTATAA---AGGGGCGGCAAA------TATGGTCTGAGTCAA------------------
--------------TGGAAGGAGCGGGCTGTGCTCGTGTTGTAAGGCGGTCATGGC----------------
------------------------------------------------------------------
>PasPL2 JAMFRE010000112.1:c25106-24910 Pascua sp. PL2904B ctg_112, whole genome shotgun sequence
--------------------------------------------------------------------GGAC
AAAAGCTGACGATCAGTTTTTAGAAAGGATGACT-----CTCCGCGGCCGCAGCG----ATTCGA-------
---------CCCTGCC---------CC-------GCG-CCGC---TT----GCGG--CGT---------GG-
----CGT----GGCT----CGG------------------AC-TGAC-------ATCAGCCGCCCGGCGGCC
ACCC--TCCTTGTTAAAA--AAGGGGCGGCGGT------TATGGTCTGACTAAACGA---------------
------------TGGCGAGTGGTGTTGGGGGTGGGATTTGC-------------------------------
------------------------------------------------------------------
>NaeAur JAKFAO010000011.1:c814900-814536 Naematelia aurantialba strain NX-20 Contig11, whole genome shotgun sequence
-------------------------------------------------------------GTTGTCCATAC
GCTGACGGGCGCCGCAGTTAAAAATATGATGACA-----TTCCCTGGCCGCAGAG----CGTTGAC------
--------CGTC--TC--------CCC--G-----CG--TCT--CTTT---AGA--GCG------A---GGG
----TC-----GA----A-GACG--A-------------GCG-AGAC-------ATCTGCCGTCTGGCGGCC
ACCA--TCCTTGTTATAA--AAGGGACGGCTAATTCA--CACGGTCTGACTCC---AAGAC-----------
-------------TTGGAAGGATGCTGCGAGGCGGGAGAGATACTCTTGGCAGGCGTGCGGGCGAAAGCCAG
CACTCGAAGCATCAGCTACAAACCATACTCCGCCGATTGCCCTCTGTCTCGTCTCTTTGTTCTCG-
>NaeEnc MCFC01000127.1:c16308-16100 Naematelia encephala strain 68-887.2 BCR39scaffold_127, whole genome shotgun sequence
------------------------------------------------------------------------
----------CTGGTAGTTACAAACATGATGACA-----TTCCTCGGCCGCAGAG----CGTTGAC------
--------CGTC--TC--------CCC-------CTG--TCT--CTTC---GGA--GCGG---------GGG
----TC-----GA----A-GACG--A-------------GCG-AGAC-------ATCTGCCGTCTGGCGGCC
ACCC--TCCTTGTTATAA--AAGGGACGGCTTATTCA--CACGGTCTGACTC----GAGTC-----------
-------------TTGGAAGGATTGTTGAGTAAGAAGATGAATGCATGATAGATCAGGAT------------
------------------------------------------------------------------
>BulAlb CAMYTR010000014.1:c110493-110268 Bullera alba genome assembly, contig: jcf7180000012106, whole genome shotgun sequence
------------------------------------------------------------------TGACGG
CCTCCCTCTCCATAGTTTTAAAGAAATGATGACAA-----CCCACGGTCGCAAAG----AGTTGAC--GA--
--------GCTC------------CCCTG------TATCCGCA-CTTGT-TGCGGGTTA--------TGGGG
--TGCACAA-------AC-GAGC-CA-------------GTA-TGAC-------ATCTGTCGTCCGGCGACC
AAACC-TCCTTGTTACCA--AAGGGACGGCTATGACGGA-ACGGTCTGACTCAATGAAGA------------
------------TCTGGAAGGATCGTTTCATAGGAATTAGG-------------------------------
------------------------------------------------------------------
>KocImp NBSH01000014.1:c210608-210381 Kockovaella imperatae strain NRRL Y-17943 BD324scaffold_14, whole genome shotgun sequence
-----------------------------------------------------------------------C
GCCTTGAACTGTTCAGTTTCAAGAAATGATGACAA----CTCCACGGTCGCAAATT---AGTTGAC--GA--
--------GCTC------------CCGGGTTT-----CCCTC--TCTT---GGGTG--------TTTCTCGG
---TATT------------GAGC-CA-------------GTC-TGAC-------ATTTGCCGTCTGACGACC
AACCTTACCTTGTTATAA--AAGGGACGGCTAGGAGATGAACGGTCTGACTCCATGAAAGGAG---------
---------------GGAAGGAGGATCAGAGACATGAGACAATGGATTAAA---------------------
------------------------------------------------------------------
>PapLau JDSR01000087.1:c21511-21302 Papiliotrema laurentii RY1 contig_92, whole genome shotgun sequence
--------------------------------------------------------------------GATC
ATCATGCTGACGGTCCAGTTTACAAATGATGACG-----TTCCAAGGCCGCAGAATA--TCTTGAC--C---
--------GCTC------------CCCGA-A-------CCCC--TCGC---GGGG----------A-TCGGG
----TC-------------GAGC-CA-------------GAG-TGAC-------ATCTGCCGTCTGGCGGCC
ACCA-TTCCTTGTTACCA--AAGGGACGGCTATGAACA-TACGGTCTGACTCGAATCA--------------
---------------TGAGGGATTGCTTGCGTTTGATGGTGGAGAG--------------------------
------------------------------------------------------------------
>PapTer JAHXHD010001055.1:26587-26974 Papiliotrema terrestris strain LS28 scaffold-1054, whole genome shotgun sequence
-------------------------------------------------------------GGTGCATGCAG
AACGATTCCTGATGCCAGTTTGAAAATGATGAC-----TCTCCATGGCCGCAGAATATTCGTCGAC--A---
--------GCTC------------CTT------------CGT---TC----GCG---------------GAG
----TC-------------GAGC-CA-------------GTG-TGAC-------TTCTGCCGTCTGGCGGCC
AACT-CTCCTTGTTACCA--AAGGGACGGCTATGACTA-TACGGTCTGACTCATATAACA------------
--------------TGCGAAAGGTGTTGTGGTGAGCGAGATCATTGTGGATGACGGGGGCAAAGCTGCAGCT
ATATATAATGGGCCCAACGATGATCCGAGTGATGGGCAATACGTGTAGTGGATTCCCAGTCTTCTT
>CryFla CAUG01000078.1:c10655-10300 Cryptococcus flavescens NRRL Y-50378 WGS project CAUG00000000 data, contig NODE_110_length_58760_cov_47_189636, whole genome shotgun sequence
-------------------------------------------------------------ATGGCATGCAG
GCCTCGCGCTGACTCCAGTTTGAAAATGATGAC-----TCTCCATGGCCGCAGAATATTCGTCGAC--A---
--------GCTC------------CTC------------CGT---CC----GCG---------------GAG
----TT-------------GAGC-CA-------------GTA-TGAC-------TTCTGCCGTCTGGCGGCC
ACAT-CTCCTTGTTACCA--AAGGGACGGCTATGACTA-TACGGTCTGACTCATATAACA------------
--------------TGCGAAGCGCGTTGCGTTGAGAGATTGCTCTCGCTGCAAGGCAGCGAAAGCTCAGGCT
TGCCGCACTTTGTGATAGAGCGGTGAATTAGAGGATGGGGGGTCGGAATTCTGCTAGCTTTGTACA
>DioCroc BCKK01000002.1:1409626-1409895 Dioszegia crocea DNA, scaffold: scaffold_1, strain: JCM 2961, whole genome shotgun sequence
---------------------CCTTCATCCTTCCAATGTAAGTACAGTCACCCTCATCATCAAGCTGCCCAC
ACACTAACACACACAGTCTATGAGAATGATGACAA----CCCCAAGGTCGCAGAG----CGTTGAC------
--------GCG-A-GCCAT-----CTT--GA------CTCTC--TACG---GAGGG--------AA---GGG
---AAA----GTTGC--A--CGC-CTC------------GAA-TGAC-------ATCTGCCGTCTGGCGACC
ACCC--TCCTTGTTATAA--AAGGGACGGCT-T-ATTA-TACGGTCTGATCAC---GGGAA-----------
---------------TGAAGGATGTCTGTTTCCATGTAGTGTAGCTGCTCGC--------------------
------------------------------------------------------------------
>DioHun JAKWFO010000005.1:c1081551-1081329 Dioszegia hungarica strain PDD-24b-2 MKK02contig_8, whole genome shotgun sequence
--------------------------------------------------------CAAGTAGAGAGCGCAG
CAGCTGACTCATTCAGTCTATGAGAATGATGACA----CCTCCTTGGTCGCAGTG----CGTTGAC------
--------GCG-A-GCCAT-----CCT--AA------GCTTC--TACG---GAGGC--------GC---GGG
---AAA----GTTGC--A--CGC-TATT-----------GAA-TGAC-------ATCTGCTGTCCGGCGACC
ACCC--TCCTTGTTATAA---AGGGACGGCTTACCG---TATGGTCTGATCACC--GAG-------------
-------------TTGGAAGGGCGCCTCTTCTGTGATGT---------------------------------
------------------------------------------------------------------
>DioAur BCKN01000002.1:323460-323675 Dioszegia aurantiaca DNA, scaffold: scaffold_1, strain: JCM 2956, whole genome shotgun sequence
------------------------------------------------------------------------
-AGCTGACTCGCACAGTCTATGAGAATGATGACAA----CTCCAAGGTCGCAGAG----CGTTGAC------
--------GCG-A-GCCAT-----CCC--GA------CTTTC--TACG---GAATG--------GA---GGG
---AAA----GTTGC--A--CGC-CTCA-----------GAA-TGAC-------ATCTGCCGTCTGGCGACC
ACCC--TCCTTGTTATAA--AAGGGACGGCTTATCA---TACGGTCTGATCACT--GGGG------------
-------------TTGGAGGGAACGTAGCTAGCTGTCGCTCTCCTCG-------------------------
------------------------------------------------------------------
>CutOle QKWL01000002.1:c1673947-1673689 Cutaneotrichosporon oleaginosum strain ATCC 20508 ATCC20508_contig02, whole genome shotgun sequence
CAGCCTGCGCGATCCGAGTTCAGCATCCTTCCATCGGTGAGTCGAGAAGAGGAGAAGAGGAGAGGAGAGCAA
AGATCGCTGACCCCAGTTTAAACAAGTGATGACA-----CCCCACGGCCGCAGGT----ATTCGAC------
-------TGC----ACCC--------------------------CTCGA----------------A------
-----------GGGT------GCA---------------GGT-GGACAGA-------AGCCGCCCGGCGGCC
ACCC--TCCTTGTTATA---AAGGGGCGGCGC-------TTAGGTCTGAGTCACGA----------------
--------------TGGGGAGCGGTGTCTTCGGGCAGCGTTTTGTAGATGAGAGT-----------------
------------------------------------------------------------------
>CutMuc BCJT01000028.1:108185-108399 Cutaneotrichosporon mucoides DNA, scaffold: scaffold_27, strain: JCM 9939, whole genome shotgun sequence
----------------------------------AGTACCTCGAGTTCTCGAGAAACATGCCGCAATAGGAC
GCGCCGCTGACAGCAGTTTTTAAAAGTGATGACAA----CCCGCTGGCCGCAGGT----ATTCGAC------
-------TGC----GCC------------------------C--CTCGT--G--------------------
-----C------GGC------GCA---------------GGT-AGACAGC-------AGCCGCCCGGCGGCC
AACC--TCCTTGTTATA---AAGGGGCGGCAC-------CCAGGTCTGAGTCACGG----------------
--------------TGGGGAGCGTGGGCTTGCGCGTGTGTAGCG----------------------------
------------------------------------------------------------------
>TriPor BCJG01000001.1:5042955-5043181 Trichosporon porosum DNA, scaffold: scaffold_0, strain: JCM 1458, whole genome shotgun sequence
-------------------------------------------------------------GACTCTGGCGC
TGACGTTCCCTTCTCAGTTTTAGAAAGGATGACA-----CTCCGCGGCCGCAGCT----ATTCGAC------
-------TGC----GCC-----------------------CC--TACGC--GG-------------------
-----C------GGC------GCA---------------GGC-AGACATC-------TGCCGCCTGGCGGCC
ACCC--TCCTTGTTAACA--AAGAGGCGGCAAACG----CACGGTCTGACTCTAACAAACAA----------
--------------TGGGCAGCGCATGTTGCTGGTCTTGTGTCGCGTGTACGTGGGCTACCTACTGCAAGTG
------------------------------------------------------------------
>ApiSia JALJEG010000002.1:208146-208365 Apiotrichum siamense strain L8in5 NODE_2_length_848724_cov_10.959104, whole genome shotgun sequence
------------------------------------------------------------------------
---GACTGACATCTGCAGTTTAGAAAAGATGACA-----CTCCGCGGCCGCAGTA----CTTCGAC------
-------TGT----GCC-----------------------TC--TACGT--GA-------------------
-----T------GGC------GCA---------------GGC-AGACAGA-------AGCCGCCCGGCGGCC
ACCC--TCCTTGTTATTA--AAGGGGCGGCAAC------CACGGTCTGACTAAAACCACA------------
--------------TGGACAAGAGGATTTGTGAGCTCTCAGTTGGACGGCGCGTCTTGTGGCGCTGCGGCGT
GCTGAGTAGCG-------------------------------------------------------
>CutCut LTAL01000342.1:c15707-15538 Cutaneotrichosporon cutaneum strain ACCC 20271 contig342, whole genome shotgun sequence
------------------------------------------------------------------------
---GCTAACACCTTGCAGTTTAGAAAGGATGACA-----CTCCGCGGCCGCAGCA----CTTCGAC------
-------TGC----GCC-----------------------TC--TACGT--GA-------------------
-----T------GGC------GCA---------------GGC-AGACAGA-------CGCCGCCCGGCGGCC
ACCC--TCCTTGTTAATA--AAGGGGCGGCATT------TACGGTCTGACTAAAACACATAAA---------
--------------TGGAAGCGCGCGCGCG------------------------------------------
------------------------------------------------------------------
>ApiBra JAMALJ010000019.1:389741-389960 Apiotrichum brassicae strain M2204 ctg_19, whole genome shotgun sequence
----------------------------------ACGTCCTTCGTTCCACTATCTACATCCCCCATCTTGTT
CAATCGCTGACAACCCAGTTTAGATAGGATGACA-----CTCCACGGCCGCAGCA----TTTCGAC------
-------TGC----GCC-----------------------TC--TACGT--GA-------------------
-----C------GGC------GCA---------------GGC-AGACAGC-------AGCCGCCCGGCGGCC
ACCC--TCCTTGTTATTA--AAGGGGCGGCAT-------TACGGTCTGACTAAAACACAC------------
--------------TGGAATGGAGATTTTGGGAACTGGGGGAC-----------------------------
------------------------------------------------------------------
>TriVee BCKJ01000010.1:80114-80466 Trichosporon veenhuisii DNA, scaffold: scaffold_9, strain: JCM 10691, whole genome shotgun sequence
-------------------------------------------------------------CCCCACAGCAG
ACTCACTAACAACCCCAGTTTAGAAAGGATGAC-----TCTCCATGGCCGCAGGT----TTTCGAC------
-------TGC----GCC-----------------------TC--TACGT--GA-------------------
-----C------GGC------GCA---------------GGC-AGACAGA-------CGCCGCCCGGCGGCC
ACCC--TCCTTGTTATTA--AAGGGGCGGCATT------TACGGTCTGACTAAAACACATA-----------
--------------TGGAAGCGCGCTTTGCTGCGTCGTCTGGCTTGTGTGCCAGCACGGCGTGTGCGGCGTG
GATCTTAGATTGTAGAAAAGAGAGCGGGGGAGGTGAGGAGCGTGGCGAGAGTGGCAGGGCGCTAG-
>ApiAki PQXP01000019.1:c85621-85372 Apiotrichum akiyoshidainum strain HP2023 Contig1040, whole genome shotgun sequence
--------------ATGTCCCCCCCTCCCGATATACCCCAAGGCTCAGCCGGTGTACCATGACTTTGATGAC
AACCGCTGACATCTTTAGTTTAGAAAGGATGACA-----CTCCACGGCCGCAGCT----CTTCGAC------
-------TGC----GCC-----------------------TC--TACGT--GA-------------------
-----C------GGC------GCA---------------GGC-AGACAGA-------CGCCGCCCGGCGGCC
ACCC--TCCTTGTTATTA--AAGGGGCGGCAT-------TACGGTCTGACTAAAACACATC-----------
--------------TGGATTGGATTGAGTGCGCGCACGGCGCCGCCTCGGGG--------------------
------------------------------------------------------------------
>TriLai BCKV01000003.1:1448239-1448448 Trichosporon laibachii DNA, scaffold: scaffold_2, strain: JCM 2947, whole genome shotgun sequence
------------------------------------------------------AGGTCACAGTTCAAGGAC
ACCCGCTGACATTTTCAGTTTAGAAAGGATGACA-----CTCCACGGCCGCAGCT----CTTCGAC------
-------TGC----GCC-----------------------TC--TACGT--GA-------------------
-----C------GGC------GCA---------------GGC-AGACAGA-------CGCCGCCCGGCGGCC
ACCC--TCCTTGTTATTA--AAGGGGCGGCAT-------TACGGTCTGACTAAAACACATC-----------
--------------TGGATAGGATTTCGAGCGCCCTCGGTGTCGCCTCGATG--------------------
------------------------------------------------------------------
>TriOvo WEIQ01000015.1:19000-19219 Trichosporon ovoides strain 2NF903A scaffold15-size876824, whole genome shotgun sequence
-----------------------------------------TGCGGACTGCACATCTTCCGATAATATGTAG
TGTGTACTGACACCCGCAGTAAGAAAAGATGACAA---TCCCAAAGGCCGCAATT----CTCTGAC------
-------ATA----GCC-----------------------CG--CCCA---CG-------------------
--GGAAGTT---GGC------TAT---------------GCG-TGAT-------ATCTGCCGCCCGGCGGCC
GACC--TCCTTGTTATA---ATGGGGCGGTTTCGC----TACGGTCTGACTAAACTCCCACG----------
--------------TCGAGGTGAAGTGATGGGTCAACGA---------------------------------
------------------------------------------------------------------
>TriInk QAYW01034232.1:23-264 Trichosporon inkin strain C-2155 NODE_34294_length_312_cov_1.56596_ID_297847, whole genome shotgun sequence
---------------CCTTCCGATGATGGAAC---TAGCCGCGGACCGCACAG---TTTTCGATATGTGTAG
TGTTAGCTGACGCTTGCAGTAAGAAAAGATGACAA---TCCCAAAGGCCGCAACT----CTCTGAC------
-------ATA----GCC-----------------------CGC--CT---GCG-------------------
--GGAAGTT---GGC------TAT---------------GCG-TGAT-------ATCTGCCGCCCGGCGGCC
GACC--TCCTTGTTATA---ATGGGGCGGTTTCGC----TACGGTCTGACTCAACTCTACG-----------
-------------TCGGAGGTGGACTCGATGGGCCGGAGCG-------------------------------
------------------------------------------------------------------
>TakKor BCKT01000002.1:1878499-1878691 Takashimella koratensis DNA, scaffold: scaffold_1, strain: JCM 12878, whole genome shotgun sequence
------------------------------------------------------------------TACCCT
CGGGGGCGGTTCCATCCGGGATCAAGACTTGACAAG-----CCGCGAAAGTGTGC---AGGTTGA---G---
-------TCTTT--GT---GCGG----------------ACC---GAG---GG-----------T-------
----GGG------GC----AAAGA-------------A--CG-TGA-CGAGAC-ATCTGCCGCTCGGCAGCC
AAAT-CTCCTTGTTACTCCATAGGGGCGGCTTTGAGCTTGATGGTCTGAACCTTGCAAGC------------
-------------TTGGATGGGA-------------------------------------------------
------------------------------------------------------------------
>TakTep BCKS01000008.1:c358231-358001 Takashimella tepidaria DNA, scaffold: scaffold_7, strain: JCM 11965, whole genome shotgun sequence
---------------------------------------------------------------------TTT
TTTTTTTTGAAAAAAAAAAAAATAGAAAATGAT-------TCTTT----GTGCGT--ACCAAGGAG------
--------TA--GGGTTC--------TGG-T---------TGA--GA---TCA--------------CCA--
----AAA----GAGT-GA---TA-GC-------------TCG-TGAATGAGAC-ATCTGCCGCTCGGCAGCC
ACAT-CTCCTTGTTACCCCATAGGAGCGGCTTTGAACG-CACGGTCTGAAATTTATAAAAC-----------
--------------TTGAAAGGATAGAGGCGAGCATTGCATAGGGAGTCTGGATCAAGCGGGG---------
------------------------------------------------------------------