snR51s-SNORD57

  • snR51s-SNORD57_intronic-boxCDsnoRNA-79nt

  • Within CNC01900 (CNAG_01679) encoding small subunit ribosomal protein S15.

 C. neoformans 

../../_images/snr51c_h99_igb.png

Intron missed in annotation of CNAG_01679

 

  • Predicted target in 18S rRNA: ctcAttaaatcag

  • Orthologue of yeast snR51 (D-guide), human SNORD57

../../_images/snr51-snord57-aligned.png

>AE017343.1:516395-516472 Cryptococcus neoformans var. neoformans JEC21 chromosome 3 sequence
TAGCGTGATGTTTTACCAAACCTGATTTAATGAGCCTGAGCCTTTTGGTCTGGACGACAACCTTTTGTGT
ACCTGATA







  • Image source:

# STOCKHOLM 1.0
#=GF RW van Nues, June 2023
#=GF https://coalispr.codeberg.page/paper
Annot/1-34                                                       --------------------------------------------------------------RTGATGA------------------GACUAAAUUACU--CTGA--------------RTGATGA-----------------CTGA---------
#=GS SNORD57-snR51_intronic-boxCDsnoRNA-79nt-in-CNC01900/1-79 DE ncrna 3:516393:516472:1
SNORD57-snR51_intronic-boxCDsnoRNA-79nt-in-CNC01900/1-79         ---------------------------------------------------------CTAGCGTGATGT--------TTTACCAAACCTGATTTAATGAGCCTGAGCCTTTT---GGTCTGGACGACAACCT--TTTGTGTACCTGATA-------
#=GS H99/1-79 DE CP003830.1:587119-587197 Cryptococcus neoformans var. grubii H99 chromosome 11, complete sequence
H99/1-79                                                         ---------------------------------------------------------CTAGCGTGATGT--------TTTACCAAACCTGATTTAATGAGCCTGAGCCTTTT---GGTCTGGACGACAACCT--TTTGTGTACCTGATA-------
#=GS R265/1-95 DE CP025759.1:846350-846444 Cryptococcus gattii VGII R265 chromosome 1, complete sequence
R265/1-95                                                        -----------------------------------------------GTCACCATCTCTAGCGTGATGT--------TTTACCAAACCTGATTTAATGAGCCTGAGCCTTAT---GGTCTGGACGACAACCT--TTTGTGTACCTGATACTATCT-
#=GS WM276/1-85 DE CP000288.1:574610-574694 Cryptococcus gattii WM276 chromosome C, complete sequence
WM276/1-85                                                       ------------------------------------------------------TCTCTAGCGTGATGT--------TTTACCAAACCTGATTTAATGAGCCTGAGCCTTTT---GGTCTGGACGACAACCT--TTTGTGTACCTGATACTA----
#=GS KwoSha/1-82 DE NQVO01000007.1:c449447-449366 Kwoniella shandongensis strain CBS 12478 scaffold00007, whole genome shotgun sequence
KwoSha/1-82                                                      ---------------------------------------------------------TTCGCGTGATGC--------TTTACCAAACCTGATTTAATGAGCCTGAGCCTTTT---GGTCTGGACGATAACATA---TTATGGCCTGATACATT---
#=GS CryWin/1-94 DE AWGH01000008.1:c620608-620515 Cryptococcus wingfieldii CBS 7118 supercont1.8, whole genome shotgun sequence
CryWin/1-94                                                      -------------------------------------------ACCTTTCTTGCGATTTCGCGTGATGC---------TTAACAAACCTGATTTAATGAGCCTGAGCCTTTT---GGTCTGGACGACAACCT--TACTTGTTCCTGATACT-----
#=GS SaiPod/1-100 DE RSCD01000018.1:42173-42272 Saitozyma podzolica strain DSM 27192 scaffold_18, whole genome shotgun sequence
SaiPod/1-100                                                     ----------------------------------------TGCCCCCTCCCCCCGCGTTTGCGTGATGC--------TTT-TCAAACCTGATTTAATGAGCCTGAGCCGCTTTGCGGTCTGGATGTAAACCT---TCTTGAACCTGATACAA----
#=GS TriFae/1-92 DE JXYK01000006.1:1028220-1028324 Trichosporon faecale strain JCM 2941 scaffold_0006, whole genome shotgun sequence
TriFae/1-92                                                      -------------------------------------------------------CCTTTGCATGATGT--------TTTACCAAACCTGATTTAATGAGCCTGAGCCACCTAGTGGCCGAGCTGTCAACATA-TTTTTTCGTCTGATCCCATCTC
#=GS VanPse/1-95 DE CP086717.1:c768520-768390 Vanrija pseudolonga isolate DUCC4014 chromosome 4
VanPse/1-95                                                      ----------------------------------------------------CCCTTGCCGAGTGATGTTTTT----TTTACCAAACCTGATTTAATGAGCCTGAGCCGCTT-----GCGGCAAAGCTGTTATCTTTTTACGTCTGACGATCTTCT
#=GS CutCut/1-87 DE LTAL01000172.1:119870-119958 Cutaneotrichosporon cutaneum strain ACCC 20271 contig172, whole genome shotgun sequence
CutCut/1-87                                                      -----------------------------------------------------CCCCCTCGAATGATGT--------TTTACCAAACCTGATTTAATGAGCCTGAGCCGCTTGCGGCGAAAGAAGCCAACATATTCTTTACGTCTGAC--------
#=GS ApiMyc/1-95 DE CP053621.1:8578786-8578892 Apiotrichum mycotoxinovorans strain CICC 1454 chromosome 2
ApiMyc/1-95                                                      -----------------------------------------------------CCCCCTCGAATGATGT--------TTTACCAAACCTGATTTAATGAGCCTGAGCCGCTTGCGGCGAAAGAAGCCAACATATTCTTTACGTCTGACTCCTACCC
SacCer-snR51/1-107                                               TATTATGATGATTTTTTTATATTCACACTGTACTAGATTGGTCTCTTTAACGAAGGGGCTAATTGATGACTACAAAATAAAAAATAACTGATTTAATGACTCTGAAA-------------------------------------------------
#=GS MusMus-SNORD57/1-72 DE Mus_musculus SNORD57
MusMus-SNORD57/1-72                                              ------------------------------TGGAAAGGATGAACGAACTTGGCCTGACCTT-CAGAAATGGA-----GGCAATACAACTGATTTAATGAGCCTGATCC------------------------------------------------
#=GS HomSap-SNORD57/1-72 DE Homo_sapiens SNORD57
HomSap-SNORD57/1-72                                              ------------------------------TGGAGGTGATGAACTGTCTGAGCCTGACCTTGTAGAATGGA------GGCAAAAAAACTGATTTAATGAGCCTGATCC------------------------------------------------
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