snR61-SNORD38¶
snR61_intronic-boxCDsnoRNA-83nt-in-CNL04930
Within 1st intron of CNL04930 (CNAG_07813) for transcription initiation factor TFIID subunit 13
Predicted target in 25S rRNA: (ttttggta)agcAgaactgg
Orthologue of yeast snR61, human SNORD38, SNORD38A, or SNORD38B
Accessory guide (taccaaaa) is conserved in fungi [van.Nues-2011]
>AE017352.1:388390-388472 Cryptococcus neoformans var. neoformans JEC21 chromosome 12 sequence TTCTGTGATGAACACAATTATTCAGTTCTGCTACCGAGTGCTCGTGAGCGACAACCCAATATACCAAAAA CATTTATCTGAAC
SNORD17¶
SNORD17_intronic-boxCDsnoRNA-83nt-in-CNL04930
Within 2nd intron of CNL04930 (CNAG_07813) for transcription initiation factor TFIID subunit 13
Possible target in 25S rRNA: gaaTggatt
Placement of C’ box is tentative
Role of the conserved element cgttctg is unclear; of the many sections with complimetarity (yrggryg) none is near the putative base-pairing site (gaaTggatt) in the primary or the secondary structure of the mature rRNA
In yeast, with HACA snoRNA snR86 the targeted nucleotide is converetd into a pseudouridine
>AE017352.1:388603-388881 Cryptococcus neoformans var. neoformans JEC21 chromosome 12 sequence TGATATGATTCAATTTTAGCTAAATCCATTCTCTGATTTGGTTGCCTGTCCTTCTTGTCTCGCCCGCTCATC CTTAACCTCTAGTCCGTTGAGTTGCCTGTCTGATTATCTTTGGAGAAAAGACGAGTACTCTCTTCGCGCGAT GACGAGGTTTAGGTTTGACTCTTGGGGCTTCGTGATGATCTCATTTGACGTTCTGTTGAGTGAGATCGGACC GCGGTGCGTGGTGTGGACGAGTCGTGACGGGTTGCCAAGCGTGCTTACCCGGCTTCTATGATC
Alternative targets D’-guide SNORD17 are present in the genome
Candidate targets with the potential to base-pair to a guide of at least 13 nt:
CNB03235, (RMGLV motif) CNAG_03835, DASH subunit DAD3, host SCARNA6¶ CNC01310, CNAG_07593 intron¶ CNC05770 (SGFG motif), CNAG_02967 NADH:ubiquinone oxidoreductase intermediate-associated protein…¶ CNC06440, CNAG_01518 3’UTR¶ CND00190 (RVDLV motif), CNAG_07453 Anaphase-promoting complex subunit 4 WD40 domain-containing protein¶ CNE02740 (GGFG motif), CNAG_02270 homoserine O-acetyltransferase¶ CNG01950 (EWVW motif), CNAG_03390 AAA family ATPase¶ CNH01640 (SGFG motif), CNAG_05511 ATPase¶ CNI01280 (GGFS motif), CNAG_07769 E3 ubiquitin-protein ligase¶ CNI02070 (GVDLA motif), CNAG_04343 nicotinamide mononucleotide permease¶ CNI02250 (GMDLA motif), CNAG_04324 protein-vacuolar targeting-related protein¶ CNI02570, CNAG_04291 glycosyl-hydrolase, 3’ UTR¶ CNJ02560 (GMGLA motif), CNAG_04832 RalA-binding protein 1¶ CNN00750 (W), CNAG_06345 MDM10 mitochondrial distribution and morphology protein 10 5’ SS¶Tremellomycetes targeted segments
Image source snR61-SNORD38:
# STOCKHOLM 1.0
#=GF RW van Nues, August 2023
#=GF https://coalispr.codeberg.page/paper
Annot/1-41 --------RTGATGA-------------GGUCAAGACGA-CTGA----------RTGA-TGA------------AUGGUUUU-----------CTGA-----
#=GS snR61/1-83 DE intronic-boxCDsnoRNA-snR61-83nt-in-CNL04930 ncrna 12:388390:388472:1
snR61/1-83 ----TTCTGTGATGAACACAA---TTATTCAGTTCTGCTACCGAGTGCT-----CGTGAGCGACAA-CCCAATATACCAAAAACA---TTTATCTGAAC---
#=GS in-CNAG_07813/1-83 DE CP003823.1:c498770-498688 Cryptococcus neoformans var. grubii H99 chromosome 4, complete sequence
in-CNAG_07813/1-83 ----TTCTGTGATGAACACAA---TTATTCAGTTCTGCTACCGAGTGCT-----CGTGAGCGACAA-CCCAATATACCAAAAACA---TTTATCTGAAC---
#=GS WM276/1-84 DE CP000289.1:c489463-489380 Cryptococcus gattii WM276 chromosome D, complete sequence
WM276/1-84 ----TTCTGTGATGAACACAA--TTATTTCAGTTCTGCTACCGAGTGCT-----CGTGAGCGACAA-CCCAATATACCAAAAAAA---TTTATCTGAAC---
#=GS R265/1-83 DE CP025760.1:c482671-482589 Cryptococcus gattii VGII R265 chromosome 2, complete sequence
R265/1-83 ----TTCTGTGATGAACACAA--TTATTTCAGTTCTGCTACCGAGTGCT-----CGTGAGCGACAA-CCCAATATACCAAAAA----TTTTATCTGAAC---
#=GS CryAmy/1-84 DE MEKH01000004.1:519679-519762 Cryptococcus amylolentus CBS 6273 supercont2.4, whole genome shotgun sequence
CryAmy/1-84 ---CTACTATGATGAAACAAC----TATTCAGTTCTGCTACCGAGTGTTT----CGTGAGCGATAA-CCCAACATACCAAAAAACA---TTTTCTGAAC---
#=GS CryWin/1-84 DE AWGH01000003.1:c956839-956756 Cryptococcus wingfieldii CBS 7118 supercont1.3, whole genome shotgun sequence
CryWin/1-84 ---CTACTATGATGAAAAAAC----TATTCAGTTCTGCTACCGAGTGTTT----CGTGAGCGATAA-CCCAACATACCAAAAAACA---TTTTCTGAAC---
#=GS CryFlo/1-85 DE RRZH01000006.1:c1039666-1039582 Cryptococcus floricola strain DSM 27421 chromosome 6, whole genome shotgun sequence
CryFlo/1-85 ---CTACTATGATGAAAAAAC----TATTCAGTTCTGCTACCGAGTGTTT----CGTGAGCGATAA-CCCAACATACCAAAAAAACA--TTTTCTGAAC---
#=GS CrySki/1-84 DE BCHT01000017.1:382588-382671 Cryptococcus skinneri DNA, scaffold: scaffold_16, strain: JCM 9039, whole genome shotgun sequence
CrySki/1-84 ----TTCTGTGATGAAACAAAC----TTTCAGTTCTGCTTCCGAGAG-----CCCGTGAGCGATAATAAATTCTTACCAAAAAAAC----TTTCTGATCTC-
#=GS KwoHev/1-85 DE ASQC01000133.1:65327-65411 Kwoniella heveanensis CBS 569 cont2.133, whole genome shotgun sequence
KwoHev/1-85 ----TTCTGTGATGTAACAAA---TTATTCAGTTCTGCTACCGAGTGTT-----CGTGAGCGATAAACCCAATATACCAAAAAAACAC--TATCTGAGC---
#=GS KwoMan/1-88 DE ASQF01000022.1:320285-320372 Kwoniella mangroviensis CBS 8886 cont1.22, whole genome shotgun sequence
KwoMan/1-88 TCCCTACAATGATGTAACAAA---TTATTCAGTTCTGCTACCGAGTGAT-----CGTGAGCGATAAACCAAACATACCAAAAAACA---TTATCTGAAC---
#=GS KwoSha/1-84 DE NQVO01000004.1:c719374-719291 Kwoniella shandongensis strain CBS 12478 scaffold00004, whole genome shotgun sequence
KwoSha/1-84 -----ACTGTGATGAATCACAA---TTTTCAGTTCTGCTACCGAGTACC-----CGTGAGCGATAATAAAATCTTACCAAAACAC----TTTTCTGAAACG-
#=GS CryFla/1-87 DE CAUG01000468.1:74926-75012 Cryptococcus flavescens NRRL Y-50378 WGS project CAUG00000000 data, contig NODE_1021_length_90412_cov_46_478210, whole genome shotgun sequence
CryFla/1-87 ---TTCTTGTGATGAACAAC-----TTTTCAGTTCTGCTACCGAGTGTTT----CGTGAGCGATAA-CCCAACTTACCAAAAAAAAC-TCTTTCTGATCTA-
#=GS PapTer/1-83 DE JAHXHD010000583.1:21963-22045 Papiliotrema terrestris strain LS28 scaffold-582, whole genome shotgun sequence
PapTer/1-83 ---ATCTTGTGATGAACAAC-----TTTTCAGTTCTGCTACCGAGTGTTT----CGTGAGCGATAA-CCCAATTTACCAAAAAAC---TCTTTCTGACA---
#=GS PapLau/1-85 DE JAAZPX010000021.1:c822349-822265 Papiliotrema laurentii strain IF7SW-F4 scaffold36_cov196, whole genome shotgun sequence
PapLau/1-85 --CTCATTGTGATGAACCAAA----TTTTCAGTTCTGCTACCGAATG-----TACATGAGCGATAATAAAATCTTACCAATAAAC----TCTACTGATAC--
#=GS NaeAur/1-85 DE JAKFAO010000007.1:1323209-1323293 Naematelia aurantialba strain NX-20 Contig7, whole genome shotgun sequence
NaeAur/1-85 ---CCACTGTGATGAACAATA---TTATTCAGTTCTGCTACCGAAGTCT-----CGTGAGCGATAAAGTAATCTTACCAAAAACAC-----TTCTGACACT-
#=GS NaeEnc/1-86 DE MCFC01000008.1:321832-321917 Naematelia encephala strain 68-887.2 BCR39scaffold_8, whole genome shotgun sequence
NaeEnc/1-86 ---TCACTGTGATGAACAACA---TTATTCAGTTCTGCTACCGAAG-----TACCATGAGCGATAAAGTAATCTTACCAAAAAC-----TCTTCTGACACCA
#=GS BulALb/1-85 DE CAMYTR010000134.1:145448-145532 Bullera alba genome assembly, contig: jcf7180000012235, whole genome shotgun sequence
BulALb/1-85 ---CTATTGTGATGAACAACA---TTATTCAGTTCTGCTACCGAAAG-----TACATGAGCGATAAAGTAATCTTACCAAAAATCA----TTTCTGAGCC--
#=GS TreTag/1-89 DE CAJHEQ010000298.1:c8449-8361 MAG: Tremellales sp. Tagirdzhanova-0007 genome assembly, contig: TREM_298, whole genome shotgun sequence
TreTag/1-89 ---CTTCCATGATGCACAAAACA----TTCAGTTCTGCTACCGAGTAAT-----CGTGAGCGATAACCCAACTATACCAAAAAAAAAACCTGTCTGAACTA-
#=GS TreFuc/1-83 DE LBGW01000396.1:c36328-36246 Tremella fuciformis strain tr26 contig396, whole genome shotgun sequence
TreFuc/1-83 ---TTCTACGGATGAAACAAATAC---TTCAGTTCTGCTACCGAGTGCG-----CATGAGCGATAACCCAAA-ATACCAATAAAC-----TCACTGATCC--
#=GS TreYok/1-86 DE BRDC01000043.1:503774-503859 Tremella yokohamensis NBRC 100148 DNA, KCNB35TY.43, whole genome shotgun sequence
TreYok/1-86 ---CTTCACGGATGAAACAA---TTACTTCAGTTCTGCTTCCGAATG-----CGCATGAGCGATAACCCAAAAATACCAAAAAAAC----TTTCTGATCTC-
#=GS TreMes/1-84 DE AFVY01000140.1:191904-191987 Tremella mesenterica DSM 1558 strain Fries TREMEscaffold_3_Cont140, whole genome shotgun sequence
TreMes/1-84 ---TCACAGTGATGAATCAAA----TTTTCAGTTCTGCTACCGAATGTG-----CATGAGCGATAAA-CGAATATACCAATAAAC-----TCTCTGATTCTT
#=GS TriAsa/1-86 DE SCGW01000127.1:67054-67139 MAG: Trichosporon asahii isolate N5_275_008G1 N5_275_008G1_scaffold_191, whole genome shotgun sequence
TriAsa/1-86 ---TTTTCAGGATGAAAAA-TCTTTTATTCAGTTCTGCTTCCGAGAGG-----TCATGAGCGATAAA-CAAATATACCAAAAACAC----TTTCTGATGC--
#=GS TriInk/1-87 DE QAYW01001375.1:395-481 Trichosporon inkin strain C-2155 NODE_1377_length_974_cov_3.60089_ID_232013, whole genome shotgun sequence
TriInk/1-87 --GCGTCAAGGATGAAAAATC--TTTATTCAGTTCTGCTTCCGAGAGG-----TCATGAGCGACAAA-CAA-CATACCAAAAAAC---TCTTTCTGATACT-
#=GS TriOvo/1-86 DE JAMFRG010000001.1:1259141-1259226 Trichosporon ovoides strain Y9002B ctg_1, whole genome shotgun sequence
TriOvo/1-86 ---CTTTCAGGATGAAAAACTA-TTTATTCAGTTCTGCTTCCGAGAGG-----TCATGAGCGATAAA-CAA-CATACCAAAAAC----TCTTTCTGATACT-
#=GS VanFra/1-85 DE BEDY01000001.1:c556485-556401 Vanrija fragicola DNA, scaffold: scaffold_1, strain: JCM 1530, whole genome shotgun sequence
VanFra/1-85 --ATCACTATGATGAAACAAC----TATTCAGTTCTGCTTCCGAGAGG-----TCATGAGCGATAACCATATTTTACCAAAACAC----TTTTCTGAATC--
#=GS KocImp/1-86 DE NBSH01000010.1:426444-426529 Kockovaella imperatae strain NRRL Y-17943 BD324scaffold_10, whole genome shotgun sequence
KocImp/1-86 ---TCTTCGTGATGAACATC--TTTTATTCAGTTCTGCTACCGAGAAAG-----CATGAGCGATACACC--TTATACCAAAAACACA---TTTCTGATGTC-
#=GS SacCer-snR61/1-90 DE 25S:A1133 Saccharomyces_cerevisiae snR61 http://snoopy.med.miyazaki-u.ac.jp/snorna_db.cgi?mode=sno_info&id=Saccharomyces_cerevisiae300025
SacCer-snR61/1-90 ---CTACAATGATGATAAAATTTACTATTCAGTTCTGCTTCTGAACCAAAATAATAGGA-AGATAA-CCAATTTTACCAAAGCTCAAA----TCTGATT---
#=GS SNORD38A/1-71 DE 28S:A1858 Homo_sapiens SNORD38A http://snoopy.med.miyazaki-u.ac.jp/snorna_db.cgi?mode=sno_info&id=Homo_sapiens300663
SNORD38A/1-71 ---TTCTCGTGATGAAAAC----TCTGTCCAGTTCTGCTACTGAAG----GGAGAGAGA-TGAGAG-CC-----------------TTTTAGGCTGAGGAA-
#=GS SNORD38B/1-69 DE 28S:A1858 Homo_sapiens SNORD38B http://snoopy.med.miyazaki-u.ac.jp/snorna_db.cgi?mode=sno_info&id=Homo_sapiens300664
SNORD38B/1-69 ---TCTCAGTGATGAAAAC----TTTGTCCAGTTCTGCTACTGACAGTAAG-----TGA-AGATAAA--------------------GTGTGTCTGAGGAGA
#=GS SNORD38/1-69 DE 28S:A1858 Homo_sapiens SNORD38 http://snoopy.med.miyazaki-u.ac.jp/snorna_db.cgi?mode=sno_info&id=Homo_sapiens300610
SNORD38/1-69 ---TGTCAGTGATGAAAA----TTTTGTCTAGTTCTGCTACTGACATTAAG-----TTA-TGATAAA--------------------GTCTGTCTGAGGAGA
//
Image source SNORD17:
# STOCKHOLM 1.0
#=GF RW van Nues, August 2023
#=GF https://coalispr.codeberg.page/paper
Annot/1-31 --------------RTGATGA------------UUAGGUAAG-CTGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RTGATGA----------------------------------------------------------------------GYRGGRY------------------------------------------------------------------------------CTGA-----
#=GS SNORD17/1-280 DE intronic-boxCDsnoRNA-280nt-in-CNAG_07813 4:[498,275 - 498,555] (+280):-1 CP003823.1:c498555-498276 Cryptococcus neoformans var. grubii H99 chromosome 4, complete sequence
SNORD17/1-280 ----------TGATATGATTCAAT-TTTAGCTAAATCCATTCTCTGATTTGTTTGCCTGTCCTTCTTGTCT-CGCCCGCTCATCCTT----------------AACCTCTAGCCCG----------------TTGAGTCA----------------------CATG--TCCGATTATCTT-------------------------TGGAGAAAAGACGA---------------GTACTCTCTT---------CGCGCGATGACGAGG------------TTTAGGTGTGACTCTT------GGAGGCTTCG-TGATGATCTCAGT----TGACGTTCTGTTGAGTG-AGAT-CGGATCGCGGTGCGTGGTGTGGACGAGTCGTGATGGGTTGCCAA-GCGTGCTTAC-CTGGCTTCTATGATC---
#=GS AE017352.1:388603-388881/1-279 DE Cryptococcus neoformans var. neoformans JEC21 chromosome 12 sequence
AE017352.1:388603-388881/1-279 ----------TGATATGATTCAAT-TTTAGCTAAATCCATTCTCTGATTTGGTTGCCTGTCCTTCTTGTCT-CGCCCGCTCATCCTT----------------AACCTCTAGTCCG----------------TTGAGTTG----------------------CCTG--TCTGATTATCTT-------------------------TGGAGAAAAGACGA---------------GTACTCTCTT---------CGCGCGATGACGAGG------------TTTAGGTTTGACTCTT-------GGGGCTTCG-TGATGATCTCATT----TGACGTTCTGTTGAGTG-AGAT-CGGACCGCGGTGCGTGGTGTGGACGAGTCGTGACGGGTTGCCAA-GCGTGCTTAC-CCGGCTTCTATGATC---
#=GS R265/1-279 DE CP025760.1:c482453-482175 Cryptococcus gattii VGII R265 chromosome 2, complete sequence
R265/1-279 ----------TGATATGATTCAAT-TTTAGCTAAATCCATTCTCTGATTTGGTTGCCTGTCCTTCTTGTCT-CACCCGCTCATCCTT----------------TACCTCTAGCCCG----------------TCGAGTCA----------------------CCTG--TTTGATTATCTT-------------------------CGGAAAAAAGACCA---------------GTAGTCTCTT---------CGCGCGATGACGAGG------------TTTTGGTTTGACCCTT-------GGGGCTTCG-TGATGATCTCGAT----TGACGTTCTGTTGAGTG-AGAT-CGGACCGCGGTGCGTGGTGTGGACGAGTCGTGATGGGTTGCCAA-GCATGCTTAC-CTGGCTTCTATGATC---
#=GS WM276/1-280 DE CP000289.1:c489243-488964 Cryptococcus gattii WM276 chromosome D, complete sequence
WM276/1-280 ----------TGATATGATTCAAT-TTTAGCTAAATCCATTCTCTGATTTGGTCGCCTGCTCTTCTTGTCT-CACCCGCTCATCCTT---------------CAACCTCTAGCCCG----------------TCGAGTCA----------------------CCTG--TTTGATTATCTT-------------------------CGGAAAAAAAACGA---------------GTGCTCTCTT---------CGCGCGATGACGAGG------------TTTTGGTTTGACCCTT-------GGGGCTTCG-TGATGATCTCAAT----TGACGTTCTGTTGAGTG-AGGT-CGGACCGCGGTGCGTGGTGTGGACGAGTCGTGATGGGTTGCCAA-GCATGCTTAC-CTGGCTTCTATGATC---
#=GS CryWin/2-314 DE CP034264.1:c1050633-1050320 Cryptococcus wingfieldii strain CBS7118 chromosome 4, complete sequence
CryWin/2-314 ----------CGATATGATTCAAT-TTTAGCTCAATCCATTCTCTGAGTCGTCTTCTTTTCCTTTCTGTTCCCT-ATACCCATTCTTG---------------TATCTCTAGCCCG-GTACAACTTTTCCTCACGAG--------------------------CTGAATCCGACTATCTT-------------------------CGGAGAATGGATCCAAGTCGTTGGGGCTTGGTTCTACTT---------AGCGCGATGACGAGG------------TACTGTTATGGCTCTT---GGCGGGGGCCGTTTTGAAGTCTTCAGT----CAGCGTTCTGCCGTCTGTAGA--TGGATGGCGGTGTGTAGTG-GAACGGGTCGTGAAGAGTTG-GCGATTACGCTTATACTGGCTTCTATGATC---
#=GS CryAmy/1-312 DE MEKH01000004.1:519896-520207 Cryptococcus amylolentus CBS 6273 supercont2.4, whole genome shotgun sequence
CryAmy/1-312 ----------CGATATGATTCAAT-TTTAGCTCAATCCATTCTCTGAGTTGTCTTCTTTTCCTTTCTGTTCCCT-ATACCCATTCTTG---------------TATCTCTAGCCCG-GTGAAACTT-TCCTCACGAG--------------------------CTGAATCCGACTATCTT-------------------------CGGAGAAAGGATCCAAGTCGTTGGGGCTTGATTCTACTT---------AGCGCGATGACGAGG------------TACTGTTATGGCTCTT---GGCGGGGGCCGTTTTGAAGTCTTCAGT----CAGCGTTCTGCCGTCTGTAGA--TGGATGGCGGTGTGTAGTG-GAACGGGTCGTGAAGAGTTG-GCGATTACGCTTATACTGGCTTCTATGATC---
#=GS CryFlo/1-313 DE RRZH01000006.1:c1039448-1039136 Cryptococcus floricola strain DSM 27421 chromosome 6, whole genome shotgun sequence
CryFlo/1-313 ----------CGATATGATTCAAT-TTTAGCTCAATCCATTCTCTGAGTCGTCTTCTTTTCCTTTCTGTTCCCT-ATACCCATTCTTG---------------TATCTCTAGCCCG-GTGAAACTTTTCCTCACGAG--------------------------CTGAATCCGACTATCTT-------------------------CGGAGAAAGGATACAAGTCGTTGGGTCTTGGTTCTACTT---------AGCGCGATGACGAGG------------TACTGTTATGGCTCTT---GGCGGGGGCCGTTCTGAAGTCTTCAGT----CAGCGTTCTGCCGTCTGTAGA--TGAATGGCGGTGTGTAGTG-GAACGGGTCGTGAAGAGTTG-GCGATTACGCTTATACTGGCTTCTATGATC---
#=GS KwoHev/1-373 DE ASQC01000133.1:65686-66058 Kwoniella heveanensis CBS 569 cont2.133, whole genome shotgun sequence
KwoHev/1-373 ----------TGAAATGATTACATATTTAGCTCAATCCATTCTCTGATTCGTCCTCGTCCTCCTTCCGGTCCTTCACACTCATCGCA----------------CACCTCTAGCCCGTCGGCGGACAGGTGCATCGAAGTACTCGTTATCTCTCCATTTGCGACGAAAAACCGACTACCTCTTTCGAGAGGGAAAGGCTTCATCTGAATGGATAGGAGAGACGCGGGTGGCTCTTTGTTATCCTGTCCTTTCAGCGCGCGATGACGAGGTG--------TATTCAATGATGACCTTC-------GGGGCTTCG-TGAAGACCTTGTAT---CTACGTTCTGTGGATCTTGGT--TGGAT--CGGAGTGT-GTGTTGGGTCAGTTGGGGGAAGTGGTTGAACAAGCTTAC-CAGGCTTCTATGATC---
#=GS KwoSha/1-345 DE NQVO01000004.1:c719094-718698 Kwoniella shandongensis strain CBS 12478 scaffold00004, whole genome shotgun sequence
KwoSha/1-345 ----------TGATATGATTCAACTTTTAGCTAAATCCATTCTCTGATTCCGCTTCT-CTCCATC-TGATTCCCTACACCCATTCATTTTTGTTTGTCAGCTTCATCTCTAGCCCGTCGAA----------------------------------------CGTCTTTTCCGACTATCCGCTTTCTTCTGTTGCAAGA-------CGGAAGAAAGGAGAAAG--GAATTGGTATCGTTTCTT-----------CGCGCGATGACGAGGTGTTGCGTATAACTTGTTTTGAGTGGTCCGTAAT-AGAGTTTCGTTGAAGATCTTCGTT---TCGCGTTTTGC-GAACGGAGAT-TGGATCGAGATGTGTAGTCCCGAGTCAGGTGTGGGTAGAAGCGGAGCAAGCTTAT-ACGGCTTCTATGATC---
#=GS KwoDej/1-323 DE ASCJ01000027.1:271020-271356 Kwoniella dejecticola CBS 10117 cont1.27, whole genome shotgun sequence
KwoDej/1-323 ----------GGAAATGATTCAAC-TTTAGCTCAATCCATTCTCTGATTTTGCTTCGTTTCCCTCTTT-TCACTCGTACTCATCGATATCA-----------TCAACTCTAGCCCG-CTCGGCAATCTTCATCTGT---------------------------CTGCGATCGATTACCTCTTTG---------------------CGGA-GGGAAAGG--TTGTCAGCAGAGGTAGTCTCCA----------GCGCGCGATGACGAGTTGATAC-CATTATC---TGATGACT---CGTAATTA-GGCTTTG-CGACGGTTGGTTTTT---CACGTTTTGT-GGAATCCAATTCTGACCAGAGTGTACGT-GTTGATAGTTGGAAAAGGAGTT-CAAAGCAAGCTTATAAT-GCTACTATGATC---
#=GS KwoMan/1-329 DE ASQE01000024.1:c455899-455570 Kwoniella mangroviensis CBS 8507 cont2.24, whole genome shotgun sequence
KwoMan/1-329 ----------TGAAATGATTCAAC-TTTAGCTCAATCCATTCTCTGACTTTCCTT-GATTCCCTTCTTCTCACGCGTACTCATCATTATCA-----------TCATCTCTAGCCCGTCTCTGAATGGCATTGTTAT---------------------------ATCCTATCGACTACCTTCTT----------------------CGGAAGGGAAAGA--TGGGGATATGTCTTTGTCATACAT--------GCGCGCGATGACGAGTTGATATTC--TATATAACGATGACT---CGTAATTA-GGCTTTG-TGATGATTGGTTCT---TCACGTTTTGT-GAGAATCAATTATGATCGAAGTGTACGTTGTTGAGAGCTGGAAAGAGAGGT-TAAAGCAAGCTTATACT-GCTACTATGATC---
#=GS KwoBes/1-326 DE ASCK01000021.1:c136879-136533 Kwoniella bestiolae CBS 10118 cont1.20, whole genome shotgun sequence
KwoBes/1-326 ----------TGAAATGATTCAAC-TTTAGCTCAATCCATTCTCTGACTTTCCTC-GATTCCCTCCTTCTCACACGTACTCATCGCAATCT-----------TCATCTCTAGCCCGTCTCTGAATTTCAATCCATT----------------------------TCTTTTCGATTACCTTCTTCT--------------------CGAG-GGGAAAGA---TGGGATTTG-GGTTGATGTTCAT--------GCGCGCGATGACGAGGTGATAT---TCACATTGTGATGACT---CGTAATTA-GGCTTTG-TGATGATTGGTTTTT---CACGTTTTGT-GAGGATCAATTATGATCAAAGTGTACGTTGTTGAGAGTTGGGAAGAGAGGT-CAAAGCAAGCTTATAAC-GCTACTATGATC---
#=GS CryGC7/1-292 DE JALPBX010000018.1:c224640-224243 Cryptococcus sp. GC_Crypt_7 iso00_79_18, whole genome shotgun sequence
CryGC7/1-292 ----------TGACAGGATTCAAC-TTCAGCTCAATCCATTCTCTGAATTTCCTCCA--TCCTC---TTCTGCTCCCTCACACTCAT-----------CTTTTCACCTCTAGCCCGA---TGCGGCTTGG--------------------------------------TCCGATTACTCTTT-----------------------CGAGAGGAAAGGAC------------TCTTGCTGCTCACAT-------CGCGCGATGACGAGATGAT--------TTTTCGGATGACT----ATAAT--GGGCCTCA-CGACGGTCTCAGCTTA---GCGTTTTGCT-AGCTGAGATTCCTAGTGAGGTGTGTGGTGCGGACATTTGTGGGGTGAAG--GAGAGTATGCTTAC-CTGGCTTCTATGATT---
#=GS CryGC5/1-293 DE JALPBZ010000089.1:40450-40746 Cryptococcus sp. GC_Crypt_5 iso00_58_89, whole genome shotgun sequence
CryGC5/1-293 ----------TGACAGGATTCAAC-TTCAGCTCAATCCATTCTCTGAATTTCCTCCG--TCCTC---TTCTGCACCCTCACACTCGT-----------CCTTTCACCTCTAGCCCGA---TGATGCGTGG--------------------------------------TCCGACTACTCTCT-----------------------CGGGAGGAAAGGAC------------CCTCGCTATACACAT-------CGCGCGATGACGAGATGAT--------GCTATGGACGACT----GTAAT--GGGCCCCA-CGACGGTCTTTGGCTT--CGCGTTTTGC-GAGCCGGGATCCCGAGTGCGGTGTGTCTGCGGAGCAGTCGCGGGGCGAAG--GAGAGTATGCTTAC-CTGGCTTCTATGATT---
#=GS CryGC3/1-292 DE JALPCB010000005.1:263070-263364 Cryptococcus sp. GC_Crypt_3 iso00_45_5, whole genome shotgun sequence
CryGC3/1-292 ----------TGACAGGATTCAAC-TTCAGCTCAATCCATTCTCTGAATTTCCTCCG--TCCTC---TTCTGCACCCTCACACTCGT-----------CCTTTCACCTCCAGCCCGA---TGTTGCGTGG--------------------------------------TCCGACTACTCTTT-----------------------CGGGAGGAAAGGAC------------CCTCGCTATATACAT-------CGCGCGATGACGAGATGAT--------GCTATGGACGACT----GTAAT--GGGCCGCA-CGACGGTCTTTGGCTT--CGCGTTTTGC-GAGCCGGGATC-CTAGTGCGGTGTGTTTGCGGAGCAGTCGCGGGGCGAAG--GAGAGTATGCTTAC-CTGGCTTCTATGATT---
#=GS CryVH5/7-297 DE JANBXI010000027.1:95267-95549 Cryptococcus sp. VH57_BW 27, whole genome shotgun sequence
CryVH5/7-297 ----------TGAAATGATTCAAC-TTCAGCTCAATCCATTCTCTGATTCGTCCTCCTTTCC-TTC----TTGCCTCCCATGCCCA------------TCCTTCACCTCCAGCCCGT-----TTGAGCCAGCCAGAG------------------------------TCTCGACTATCTT-------------------------CGGAGAAAGGGC--------------TCTTGGTGGGCACT-------GCGCGCGATGACGAG-----------GTATCGGTTATGGCTT---GTAAT-GGGGCCGCG-TGAACACTCTGGTTCT---GCGTTCTGC-AGTCCAGAGTC-GGAGCACGGTGTGTGGCGGGGCGGGTCGTGAGGGGACG--ACGAGTATGCTTAC-TTGGCTTCTATGATC---
#=GS CryGC2/4-265 DE JALPCC010000041.1:55361-55665 Cryptococcus sp. GC_Crypt_2 iso00_70_41, whole genome shotgun sequence
CryGC2/4-265 ----------CGAAATGATTCAAC-TTCAGCTCAATCCATTCTCTGACCTCTTTTCTCTGTCCTTT-----AAAAATCTACAA----------------------ACCCTAGCTCTA-------------------------------------------------CTCTCGACTACTCTTATCCTCTT----------------CGGAGAATAGGAGGAAAGGGAGGAA----------------------TTGAGTGATGATGGCTGGTAAT---------CGGGCTCTT-----------GTGATTGT--TGAGATCGTA---------ACGTTCTGTTACCCTCAACTTGATCAGAGTGTTTGTAGAATTTTTCAGTGATGGGAA-----TAGAGAACGATTAC-CTGGCTTCTATGATC---
#=GS BulAlb/1-329 DE CAMYTR010000134.1:145671-145958 Bullera alba genome assembly, contig: jcf7180000012235, whole genome shotgun sequence
BulAlb/1-329 ----------TGTTATGATTCAAC-TTCAGCTCAATCCATTCTCTGATCCACCCCTGTCCCGTTTCACGCTCTCACTCCCGGTGCCTCCTGT----CTTTGATCTACCTTAGCCACTTCTTCCGACGCGG----------------------------------TTGTCTCGACTAGCCTTT-----------------------CGGGGTGAAAGGACACTGCTGTCAACGAAGATT---------------TGCGTGATGATGG-GTGTTCG-TACCGACTTTGGCTTTCGGTTCCACTTGTGGATATCTCAGATGATCTTTAC----TGTCGTCTTGACGGGACTGATCGGACGGGAATGAGTGTTGAGAATGATC-TGCGGACGGGCGG-TTGGTAATGCTTATATTGGCTTCTATGAAC---
#=GS CrySki/2-277 DE BCHT01000017.1:382829-383178 Cryptococcus skinneri DNA, scaffold: scaffold_16, strain: JCM 9039, whole genome shotgun sequence
CrySki/2-277 ----------TAGTATGATTCAAC-TTCAGCTCAATCCATTCTCTGACTGCTACCCATCTCTTGATCTTTCTCTTCGCCCGCCAGAA----------------CCTCCCTAGCCCG---------------------------------------------------TCTCGACTACCCTCCTCT--------------------CGAAAGAGGGAAG------TGGGAAAGG-------------------GCGCGCGATGACGG-GTAGTGT--------GGTGACC-------TATAAT-GGGGCTTGGTTGATTGATTCCAACT---TGCGTTTTGC-GGGTAGTTTC-TTGATCCAGGTGTGTTGAGCGAGATCATGTTGGTGGGC---AGCAGCATGCTTAATTTGGCTTCTATGACT---
#=GS VanHum/2-265 DE BFAH01000021.1:411427-411771 Vanrija humicola UJ1 DNA, scaffold22, whole genome shotgun sequence
VanHum/2-265 ----------TGACATGATTAAACTCTTAGCTCAATCCATTCTCTGATTCCTCCCGTCTTCTTCCTTCGCGCCGTGC----------------------------CCACCTGCTCGTTCGGCGCCGCG-------------------------------------TGTCCCGACTACCTT-------------------------CGGGG--AAAGGGCT---------------------------------GCAGCAATGGCGG-GCATCAA-------GGGTGGCT--------GTAA--TGGGCTTGGTTGATGGCATCCGGA---ACACGTTCTGT-GTTTTGGTTGCTGGATCCTTGTGCGCGTGTGCGTTGGTCGTGAGGCGCGA--GCGAGCGTGCTTAAGCTGGCTT-TATGACT---
#=GS VanFra/2-261 DE BEDY01000001.1:c556243-555899 Vanrija fragicola DNA, scaffold: scaffold_1, strain: JCM 1530, whole genome shotgun sequence
VanFra/2-261 ----------CGACAGGATTAAACTCTTAGCTCAATCCATTCTCTTATTCCTCCCTTGTTCCCACTTGTTCACCGTGC------------------------------CGTGCCTGTCTGC------------------------------------------------TTGACCCAG---------------------------TAGGA--CGACCG-------------TTTTGGTCGTCTCT--------CTGGTAATGGTGGACG----------CCTGGCGGCT-------GGTAAT-CGGGTCTTGTTGACGGCTTTTGAC---ATGCGTTTTGT-ACGTCAGCTGCTTGATCTTGATGCGCG-GTTGAACAGTGGTGAGCGGGGA--TGGAGCGTGCTTAAAACGGCTT-TATGATC---
#=GS PasPl2/1-280 DE JAMFRE010000003.1:c686902-686617 Pascua sp. PL2904B ctg_3, whole genome shotgun sequence
PasPl2/1-280 ----------CGACAGGATTCAAC-TTTAGCTCAATCCATTCTCTGAGCCCTCCCTCCCTCCTTCCATTCTGGCG-------------------------------TACCTGCCTGTCTGCCTGGTCCGCCGAGTG-----------------------------CCGCCCGAATACCTCT------------GGGAAACCTT--TGGGAAAGGACCGGG--------------------------------CTCGTCGGGGATGGTTTGGCGCAA-----GGGCAGCTT-------------CGGGCTCGG-TAAAGGCTTCATGCA---CGCGTTCTGC-GTGTATGTTGCTGGCGCCGGGTGTACGTTGGGGCGGTCGTGAGATGGG----AGCGGCGTGCTTACATTGGCTTCTATGATT---
#=GS TriGue/1-280 DE BCJX01000001.1:2410202-2410487 Trichosporon guehoae DNA, scaffold: scaffold_0, strain: JCM 10690, whole genome shotgun sequence
TriGue/1-280 ----------CGACAGGATTCAAC-TTTAGCTCAATCCATTCTCTGAGCCCTCCCTCCCTCCTTCCATTCTGGCG-------------------------------TACCTGCCTGTCTGCCTGGTCCGCCGAGTG-----------------------------CCGCCCGAATACCTCT------------GGGAAACCTT--TGGGAAAAGACCGGG--------------------------------CTCGTCGGGGATGGTTTGGCGCAA-----GGGCAGCTT-------------CGGGCTCGG-TAAAGGCTTCATGCA---CGCGTTCTGC-GTGTATGTTGCTGGAGCCGGGTGTACGTTGGGGCGGTCGTGAGATGGG----AGCGGCGTGCTTACTTTGGCTTCTATGATT---
#=GS NaeAur/2-271 DE JAKFAO010000007.1:1323455-1323800 Naematelia aurantialba strain NX-20 Contig7, whole genome shotgun sequence
NaeAur/2-271 ----------TGATATGATTCAAC-TTCAGCTCAATCCATTCTCTGACTTCTTCCACCCCG-CCTCGTCGC-CTCACACCCACAAGTTG--------------CCTTTCAAGCCTGAC----------------------------------------------CTTCACCGACTAGTCCCCTC---------AGAGGGG-----CGAAAGGGAAGACCGGGTT-GGCTTCGCGTGGTCC-CTAGG-------AGCTCGGTGATGA---------------------------------------------CTCGATGCC-----------CACGTTCTGT-GGGCGCCGAGTAGGATCCTTGTGTGTGACGGAGATGTGGGCCGGGGTGGTC-GTAAGTGTGTTTAAACTGGCTTATATGATC---
#=GS NaeEnc/2-269 DE MCFC01000008.1:322073-322409 Naematelia encephala strain 68-887.2 BCR39scaffold_8, whole genome shotgun sequence
NaeEnc/2-269 ----------TGATATGATTCAAC-TTCAGCTCAATCCATTCTCTGACTTCTTCTTCCCCTTCT-CGTTAC-CTCACACCCAC-----------------------TCATCGCCTTGATACCTGG--------------------------------------CTTTCACCGACTAGTTCCTC---------ACGGGA-------CGAAAGGGACGGCTGGGTTTGGCTTTATGTGGTCCTCTTGG-------AGCTCTGTGACGG---------------------------------------------CTCAATATT-----------CACGTTTTGT-GAATGTCGAGTTGAAGCGTTGTGTGTGATGGGGGCGAGGG-TGGGGCGGAT-GTAAGCATGCTTATACTGGCTTATATGATC---
#=GS TriOvo/1-262 DE WEIQ01000016.1:c83507-83246 Trichosporon ovoides strain 2NF903A scaffold16-size809895, whole genome shotgun sequence
TriOvo/1-262 ----------CAACAGGATTTAAC-TTTAGCTCAATCCATTCTCTAATTCCTCACGCGTTTCCTCTGTCT-CTCCGCACCCATCTGTCC------------------CCTCGCTTG---GCGG-------------------------------------------CGCCTGACTACCTTT------------GGGGAA------AGGGACCAACGG------------------------------------GCCTGGATGACGTGAAGGAT------------GGCTTTC-----------GGGGCCC---TGAAGACGTTCTCGG-AACACGTTCTGT-GTTCCAGAGCTGATTCT-CGGTGTGCGGTTGAGGCAGTTGCGACGCTTGG--CGGAGCGTGCTTAC-CTGGCTTCTATGATC---
#=GS TriInk/4-265 DE JXYM01000004.1:c1028996-1028732 Trichosporon inkin strain JCM 9195 scaffold_0004, whole genome shotgun sequence
TriInk/4-265 ----------CAACAGGATTTAAC-TTTAGCTCAATCCATTCTCTAATTCCTCGCGTGTTTCCTCAGTG-TCACCGCACCCATCTGTCT------------------CTTTGCTTG---GCGG-------------------------------------------CGCCTGATTACCTAT------------GGGGAA------AGGGACCAACGG------------------------------------GCTTGGATGACGCGAAGGAT------------GGCTCTC-----------GGGGCCT---TGAAGACGTTTCGGG-AACACGTTCTGT-GTCCCCGAACTGATTCT-CGGTGTGCGGCTGGGACTGTTGCGATGCGTGA--CGGAGCGTGCTTAC-CTGGCTTCTATGATC---
#=GS TriAsa/2-264 DE SCGW01000127.1:67273-67536 MAG: Trichosporon asahii isolate N5_275_008G1 N5_275_008G1_scaffold_191, whole genome shotgun sequence
TriAsa/2-264 ----------CAACAGGATTTAAC-TTTAGCTCAATCCATTCTCTAATTCCTCTTCGGTTTCCTCTGAC-TCACCGTGCCCATCTGTCC------------------CCTCGCTTG---GCGG-------------------------------------------CGCTTGATTACCTTT------------GGGGAA------AGAGACCAACGG------------------------------------GCTTGGATGACATTAAGGAT------------GGCTTTC-----------GGGGCCC---TGAGAAGGCTTCTCGGACCACGTTCTGT-GTTCCAGAGCTGGATCT-CGGTGCGCGGCTGAGTCGGTTGCGACCCTTGA--CGGAGCGTGCTTAC-CTGGCTTCTATGACT---
#=GS TriCor/2-264 DE JXYL01000017.1:c686529-686266 Trichosporon coremiiforme strain JCM 2938 scaffold_0017, whole genome shotgun sequence
TriCor/2-264 ----------CAACAGGATTTAAC-TTTAGCTCAATCCATTCTCTAATTCCTCACGGGTTTCCTCTGAC-TCAACGTGCCCATCTGTTT------------------CCTTGCTTG---GCGG-------------------------------------------CGCTCGATTACCTTT------------GGGGAA------AGAGACCAACGA------------------------------------GCTTGGATGACATTAAGGAT------------GGCTTTC-----------GGGGCCT---TGGGAAGGCTTCTCGGAACACGTTCTGT-GTTTCAGAGCTGGATCT-CGGTGTGCGGCTGAGTTGGTTGCGACCCTTGA--CGGAGCGTGCTTAC-CTGGCTTCTATGACT---
#=GS TriMon/1-281 DE BCFV01000013.1:358191-358490 Trichosporon montevideense DNA, scaffold: scaffold_12, strain: JCM 9937, whole genome shotgun sequence
TriMon/1-281 ----------CAACATGATTTAAA-TTTAGCTCAATCCATTCTCTTATCCCTCCTTCTCTCCCTCTGGT-TCGGCGTACCT------------------------------GCCTGTCTGCTGCCGTGGGGG-------------------------------------CCGACTACTCTC---AGTACCAGCTTCGGCTG----TGGAAAGGAAGAAAGGCTCA-----------------------------GTCGGACGCGGGCGTGAAGGGC---------AGCTT-----------GGCGGGCCTTGTTGACGGTCTGATG---AACGCGTTCTGC-TTTCTGACGATTTGATCGGGGTGTACTGTTG-GCCAGTTGTGAGGCTGGG--GCGAGTGTGCTTAAACTG-CTACTATGATT---
#=GS ApiBra/1-282 DE JAMALJ010000011.1:c492928-492647 Apiotrichum brassicae strain M2204 ctg_11, whole genome shotgun sequence
ApiBra/1-282 ----------CGACATGATTTAAA-CTTAGCTAAATCCATTCTCTTATCCCTTCCTTCTCCCTCTGTGT--TGGCGTACCT------------------------------GCCTGTCAGCAGCCGTGGGGG-------------------------------------CTGATTACCC---TGAGTACCAGCTCTTGTAGCTG-TGGAAAAG-CGAAAGGCTCA-----------------------------GTCGGATGCGGGCGTGAAGGGC---------AGCTT-----------GGCGGGCCTTGTTGACGGTCTGATG---GACGCGTTCTGC-TTCCTGACGATTTGATCTGGGTGTACTGTTG-ACCGGTTGTGAGGATGGA--GCGAGTGTGCTTAAACTG-CTACTATGATC---
#=GS CutArb/1-201 DE BEDW01000011.1:c258979-258776 Cutaneotrichosporon arboriformis DNA, scaffold: scaffold_11, strain: JCM_14201, whole genome shotgun sequence
CutArb/1-201 ----------CGACAGGATTAAATCTTTAGCTCAATCCATTCTCTGAGCCCTCCTTGCCTTCT-GCAT-------------------------------------------GCCCGC-------------------------------------------------CGCGCCATCCGCTT------------------------GCGGTGGCCTCA-------------------------------------CGGGCCGGGCTGA--------------------------------------CGG---TGC--CAGTTC-----------GCGTTCTGC-GTCCTGGCGC-CCGATCTCGGTGCGCGGTGGGGCGTGTAGCGGGACGGGA--GTGAGCGTGCTTAA-TTGGCTTCTATGATT---
#=GS CutDas/1-198 DE BEDX01000008.1:476315-476668 Cutaneotrichosporon daszewskae DNA, scaffold: scaffold_8, strain: JCM_11166, whole genome shotgun sequence
CutDas/1-198 ----------TGACAGGATTCAAC-TTTAGCTCAATCCATTCTCTGAGCCCTCCCTGT---------------------------------------------------CTTTCTGTC--------------------------------------------GGCTCCTCACACCATCCCT------------------------CGGGGGGCTT--------------------------------------CGGGCCACGCAA---------------------------------------TGG---CGTT-CAGTTC-----------GCGTTCTGC-GTCCTGGCGC-CGGCGCGTGGTGTGTGGGCGAGACTATAGCGAGCGGGGA--GCGAGCATGCTTAATTTGGCTTCTATGACT---
#=GS CutOle/1-194 DE QKWL01000003.1:2677039-2677281 Cutaneotrichosporon oleaginosum strain ATCC 20508 ATCC20508_contig03, whole genome shotgun sequence
CutOle/1-194 ----------TGACATGATTCAAC-TTTAGCTCAATCCATTCTCTGAGCCCTCCCTT----------------------------------------------------CCTTCTGC-------------------------------------------GCGCCGCCCGCGCCCACCT--------------------------CGGTGGCTT---------------------------------------CGGGCCGTGAGA----------------------------------------CGC--TGTT-CGGTCC-----------ACGTTCTGT-GTACTGGCTG-TTGATCGCGGTGTGCGGTGTGGCGCGTTGTGAGGCGGGA--GCGTCTATGCTTCAATCGGCTT-TATGATT---
#=GS SaiPod/1-243 DE RSCD01000015.1:151739-151987 Saitozyma podzolica strain DSM 27192 scaffold_15, whole genome shotgun sequence
SaiPod/1-243 ----------TGACAGGATTCAAC-TTCAGCTCAATCCATTCTCTGATTCCTCCTTTGCCCTCC-----CATTTCGCGTTCACCCG-------------------TCCTCGTCCTGCCGAG-----------------------------------------------TCCGATTACCTTTT-----------------------GGGAAAG-------------------------------------------GGCGACGCGGTCAAGTGT----------GCGGTCTTC-----------GGGACCTCG-CGACGTCTTCACCT-----GCGTTTTGC-GGATGGAGACTGACCGAGGTGTG---GATGCGGATGGGCTGTGGTCGAGTT-GTGAGCATGCTTAA-CTGGCTTCTATGACC---
#=GS TreFuc_a/1-262 DE LBGW01000396.1:c36063-35802 Tremella fuciformis strain tr26 contig396, whole genome shotgun sequence
TreFuc_a/1-262 ----------TGATATGATTCAAC-TTCAGCTCAATCCATTCTCTGATGCTCTGCGTCCCCCTT----------CACTGTCATACTTCC-------------TCACCTC-AGTCTAAG----------------------------------------------TGCTTTCGACTAGCATTT---------GCAAAAATG-----CGAAAGGA----------------------------------------TGCGCGACGCGGACTGGGGACA--------GGGGCCTCTC---------GGGGGCTTCG-TGAAGATGCTCTGT----CGCGTTCTGT-GACTGGCATTCAAGCGAAGAAAG--CAATGTCAGTGGGGTGGAGGGCAACG-AGTCGCGTGATTAC-CTGGCTTCTATGATC---
#=GS TreFuc/1-262 DE BRDD01000156.1:60306-60567 Tremella fuciformis NBRC 9317 DNA, KCNB80TF.156, whole genome shotgun sequence
TreFuc/1-262 ----------TGATATGATTCAAC-TTTAGCTCAATCCATTCTCTGATGCTCTGCGTCCCCTCC----------CACTACCATCCTTCC-------------TCACCTC-AGTTTGAG----------------------------------------------TGCATCCGACTAGCACTC---------GCAAGAGTG-----CGAAAGGG----------------------------------------TGCGCGACGACGACTGGGGATA--------GGGGCCTTTC---------GAGGGCTTCG-TGAAGATGCTGCGT----CGCGTTCTGT-GACTGGTGTTCAAGCGGAGAAAG--CGGTGTCGGTGGGCTGAGGGGCAACG-AGTCGCGTGCTTAC-CTGGCTTCTATGATC---
#=GS TreYok/1-262 DE BRDC01000043.1:504021-504282 Tremella yokohamensis NBRC 100148 DNA, KCNB35TY.43, whole genome shotgun sequence
TreYok/1-262 ----------TGAAATGATTCAAC-TTTAGCTCAATCCATTCTCTGATGCTCTGCGTCCCCTCC----------CACTACCACCCTTCC-------------TCGCCTC-AGTTTGAG----------------------------------------------TGCATCCGACTAGCCCTC---------GCAAGAGAG-----TGAAAGGA----------------------------------------TGCGCGACGACGACTGGGGATA--------GGGGCCTTTC---------GAGGGCTTCG-TGAAGATGCTGCGT----CGCGTTCTGT-GACTGGCGTTCAAGCGGAGAAAC--CGGTGTCGGTGGGGTGAGGGGCAACG-AGTCGCGTGCTTAC-CTGGCTTCTATGATC---
#=GS TreTag/1-270 DE CAJHEQ010000298.1:c8219-7944 MAG: Tremellales sp. Tagirdzhanova-0007 genome assembly, contig: TREM_298, whole genome shotgun sequence
TreTag/1-270 ----------CGATGTGATTCAAC-TTCAGCTCAATCCATTCTCTGACTTGTCCATCGTCCCT-TTCCACCTTCTCATACCATCTGGCTGTG--------------CCCTAGCTAGCT------------------------------------------------TGCCGTACTAGCTTC---------GGCGAAATGG-----CAGGTGT-----------------------------------------TACGCGACGATGGGCGGGCATCA-------GTGGCC----------GTGTTGGACTTTGCGGTGCTCTCGAC-----CGGCGTCTTGCTGGTTCAGTGTGTAGTAGAGTGTATGAGGTGGTCGTTAGGAGAGGCGGTA---GTAAGCATGCTTAAGGTGGCTTTTATGATC---
#=GS TreMes/1-250 DE AFVY01000140.1:192139-192388 Tremella mesenterica DSM 1558 strain Fries TREMEscaffold_3_Cont140, whole genome shotgun sequence
TreMes/1-250 ----------CAACATGATTCAAC-TTCAGCTCAATCCATTCTCTGACTCGCTTCATCTCCATC-ACTCTTCTTCGTTCCCCTGACGCTGT-----------------CAAGCGT-----------------------------------------------------CCCGACTACCTTCACA---------------------GGGAAAGGGG-----------------------------------------CGTATGATAGT-TTTGGT--------TGGGGCCTTC-----------GGGACTTTCATACATATCTGTC-----TTGCGTTCTGTAAGCAGACTTCTGTGCAAGGG---TACGTAAGCGGTGTGATGTGAGATTTTG-CGCGGTATGCTTAA-CTGGCTTCTATGATT---
#=GS CryFla/2-249 DE CAUG01000468.1:75155-75404 Cryptococcus flavescens NRRL Y-50378 WGS project CAUG00000000 data, contig NODE_1021_length_90412_cov_46_478210, whole genome shotgun sequence
CryFla/2-249 ----------TGTAATGATTCAAATCTTAGCTCAATCCATTCTCTGATCTCCTCCATCCG-------------TCATTCAAACT------------------CACACATCCGTC----------------------------------------------------TTCCGCACTCTCAGCGCTCTTCA----------------CGGAG-------------------------------------------TGTCTGGTGAG-TTTGGGAAAGTGC----GGCCGCC-----CTTGTGCGGATCC--ACGATCTCTTCCTA-------CGCCGTTTTG--GCCAAG-TCGAGTGACCGGAGCGTGTCGTGCAGTGTGGGTGATACGATGGC-GGAGTCATGCTTAT-CCGGCTTCTATGAAC---
#=GS PapTer/2-249 DE JAHXHD010000583.1:22189-22437 Papiliotrema terrestris strain LS28 scaffold-582, whole genome shotgun sequence
PapTer/2-249 ----------TGTAATGATTCAAATCTTAGCTCAATCCATTCTCTGATCTCCTCCATCTG--------------TCATCCACACT-----------------CACACACCCGCC----------------------------------------------------TTCCGCACTCTCAGTGCCCTTCA----------------CGGGG-------------------------------------------TGTCTGATGGG-TCTGGGAAACTGC----GGTCGCC-----TTCGGGCGGATCC--ACGATCTCTTCCTA-------CGCCGTTTTG--GCCAAG-TCGAGTGACCGGAGCGTGTCGTGCAGAGTGGGTGATACGATGGC-GGAGTCATGCTTAT-CCGGCTTCTATGAAC---
#=GS PapLau/1-288 DE JDSR01000782.1:20172-20459 Papiliotrema laurentii RY1 contig_811, whole genome shotgun sequence
PapLau/1-288 ----------TGTCATGATTCAAC-TTTAGCTCAATCCATTCTCTGATCTCCCCTCGAACCCCCTTCTCTCTG---------------------------------CTCCCGCCCGCTCCCATTCTTCTAGCCA--------------------------------TTCTCGACTAGTTGTCTCTGCCCCTCGGGGCTGGAGA--CGACGAAAGGAA------------------------------------TCTGCGAGGACGAAGATA------GGGTTGTCGGCCTCTTCACT-----GAGGATCCCTGGCGCTTCTCACCT-----GTCGTTTTG--ACGGTGAGAAGAAGATTGGAGCGCGGGAGACGAGGTCGGGGGATCGTTG---AGAGGCATGCTTAT-CCGGCTTCTATGAAC---
#=GS KocImp/1-281 DE NBSH01000010.1:426724-427140 Kockovaella imperatae strain NRRL Y-17943 BD324scaffold_10, whole genome shotgun sequence
KocImp/1-281 ----------CGATATGATTTAAC-TTCAGCTCAATCCATTCTCTGAGCTCAACTCATCGCCCTCCTTGATTCT---CCCCACTTCAATC------ACTCTATCCTTTCCAGCCACAAGCG---------------------------------------------TTCTCGATGTGTGATGAA-------------------AACGACCCAGA-----TATGGGACTTTCGATGCTGGCTCTTTT-----GATCTCAGGCGAAAGTTGAT---CTCTGATCGACGACT----------------AGCC----CGAAGAGAATT-------CGAGTTTTG--GCTCACTGTCTGCCTCTGAGCCT----GTGATTAGTCTGCATA---------ATCCGGTTGCTAT----GTGTGCGATGACG---
Annot-HomSap/1-34 --------------RTGATGA--------CAAG-UAGGUAAG-CTGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RTGATGA----------------------------------------------------------------------------------------------------------------------------------------------------------CTGA-----
#=GS OrnAna-SNORD17/1-244 DE SNORD17 Ornithorhynchus_anatinus SNORD17 http://snoopy.med.miyazaki-u.ac.jp/snorna_db.cgi?mode=sno_info&id=Ornithorhynchus_anatinus304503
OrnAna-SNORD17/1-244 ------GTGACATGATGATGAA-------GTTT-ATCCATTCTCTGAGCTTGCAGACTCTGCCCTCCTTCAGC-------------------------------ATCGAGGTTCCTGTTCTAGGGCCTC-GGTGTTTCGCGGCCT-TCTGTGCACTCCAG-----CCTTCCAGTGTTCTACT-----------------------GGGGGTGCGA-------------CCGTGT---CCGGTTGACTGCTTGAGGGTGTGGTGGAGTTAGCAGGGTGGGAACCCCTTCTGGGGGGATCCCATCTCGGCAAAGACGAATGATGGG-------------------------------------------------------------------------------------------AGTCTGATCAC-
#=GS HomSap-SNORD17/1-236 DE SNORD17 HBI-43 28S:U3797 Homo_sapiens SNORD17 http://snoopy.med.miyazaki-u.ac.jp/snorna_db.cgi?mode=sno_info&id=Homo_sapiens300482
HomSap-SNORD17/1-236 ------GTGAAATGATGATTCA-------GTTT-ATCCATTCGCTGAGTGCGCTGCA-CTGACCTTCTTCCAA-------------------------------GCCTCAGTTCCTGTTCTAGGAACTT-GAGGCTATGTAGCCTGAAAATGCCCTGCAG------TCTGCAGTGTTCTACT-----------------------GTGAACTGC------------TTGTGTGT-GGCAGGCTACCGGTAAGAATGGTTGGTGT---CAGCAGGGACGGGG--CCCTCTGAGA----CCCATCTC-ACAAAGATGAGTGGTGAA-------------------------------------------------------------------------------------------AATCTGATCAC-
#=GS Y74C9A.6/1-163 DE 26S:U2417 Caenorhabditis_elegans Y74C9A.6 http://snoopy.med.miyazaki-u.ac.jp/snorna_db.cgi?mode=sno_info&id=Caenorhabditis_elegans300020
Y74C9A.6/1-163 AGACAGAGGAGTTGATGAGAAC--------TCTAATCCATTCTCTGAGCGAGAAGGATGGCCG-----------------------------------------AAGCGGGTTCGCATTTGAGGCA-TT----------------------------------------------------------------------------------------------------------------------------AAGGTAGACGA------CAGAG-------TTCTTCTGGAAACT-----ACTGCCTCGCGCTGACGTCATGCCTTCGCGGGCTGAATTTT------------------------------------------------------------------------GGGTCTGATCCTC
//
Image source CNB03235, CNAG_03835 (DASH subunit DAD3, host SCARNA6):
# STOCKHOLM 1.0
#=GF RW van Nues, August 2023
#=GF https://coalispr.codeberg.page/paper
Target-found/1-14 ----------------------------------------------------------GAATGGGTTTGGTT-------------------------------------------------
SNORD17/1-19 ----------------------------------------------------AGTC-tCTTACCTAAATCGA-------------------------------------------------
#=GS CNB03235/1-121 DE DASH subunit DAD3 AE017342.1:976411-976531 Cryptococcus neoformans var. neoformans JEC21 chromosome 2 sequence
CNB03235/1-121 TTAACTGCCGAATCTCCCAATGAGTCGCTATTAGCAGAACTGCGAACTTTAGAGAAGCGAATGGGTTTGGTTCTCACACTGGTCAGTAATATGATGAAGGGTTCAAGAATACTTTGCTGAG
#=GS CNAG_03835/1-120 DE CP003821.1:963445-963564 Cryptococcus neoformans var. grubii H99 chromosome 2, complete sequence
CNAG_03835/1-120 -TAACTGCCGAATCTCCCAATGAGTCACTTTTAGCAGAACTGCGAACTTTGGAGAAGCGAATGGGTTTGGTTCTCACATTGGTCAGTATTACGTTGAAGGGTTCAAAAGTACTTTGCTGAG
#=GS WM276/1-116 DE CP000286.1:c631388-631273 Cryptococcus gattii WM276 chromosome A, complete sequence
WM276/1-116 TTAACCGCCGAATCTCCCAATGAGTCACTATTAGCAGAACTGCGAACTTTGGAGAAGCGAATGGGTTTGGTTCTCACACTGGTCAGTATTATGATGAAGGGTTTCAAAAGTATTTT-----
#=GS R265/1-115 DE CP025761.1:1333161-1333275 Cryptococcus gattii VGII R265 chromosome 3, complete sequence
R265/1-115 TTAACCGCCGAATCTCCCAATGAGTCACTATTAGCAGAACTGCGAACTTTGGAGAAGCGAATGGGTTTGGTTCTCACACTGGTCAGTACTATCATGATGGGGTTCAAAATTCTTT------
#=GS TsuWin/1-78 DE XM_019175884.1:130-207 Tsuchiyaea wingfieldii CBS 7118 DASH complex subunit DAD3 (L198_03758), partial mRNA
TsuWin/1-78 ------GCAGAAGCACCCAACGAGTCCCTGCTCGCCGAGCTGAGGACGCTGGAGAAGCGCATGGGGCTTGTCCTCACTCTGGTC-------------------------------------
//
Image source CNC01310, CNAG_07593:
# STOCKHOLM 1.0
#=GF RW van Nues, August 2023
#=GF https://coalispr.codeberg.page/paper
Target-found/1-13 ----------------------------------------------GAGTGGATTTGGT-----------------------------------------------------------
SNORD17/1-18 ----------------------------------------AGTC-tCTTACCTAAATCG-----------------------------------------------------------
#=GS CNC01310/1-118 DE AE017343.1:c368256-368139 Cryptococcus neoformans var. neoformans JEC21 chromosome 3 sequence
CNC01310/1-118 TTCCCAGCTATAATGGGTCGACCGCTTTAGGTGGGTCGGCGGACATGAGTGGATTTGGTCTCACTATCCCCCCAAACCCATTAGCCGGCGATCCGCTGGCTGCCAACCTTGCCGTTTC
#=GS CNAG_07593/1-115 DE CP003830.1:c437784-437670 Cryptococcus neoformans var. grubii H99 chromosome 11, complete sequence
CNAG_07593/1-115 TTCCCAGCTATGGTGCATCGACCGCTTTAGGTGGATCGGCGGATATGAGTGGATTTGGTCTCACTATTCCCCCAAACCCATTAGCCGGCGATCCGCTGGCCAATCTTGGCGTTTC---
#=GS R265/1-96 DE CP025769.1:c422137-422042 Cryptococcus gattii VGII R265 chromosome 11, complete sequence
R265/1-96 TTCCCAGCTATGGTGCATCGACTACTTTGGGTGGGTCGGCGGACATGAGTGGATTCGGTCTCACTATCCCACCGAATCCATTATCCGGCGATCCGC----------------------
#=GS WM276/1-96 DE CP000288.1:c422854-422759 Cryptococcus gattii WM276 chromosome C, complete sequence
WM276/1-96 TTCCCAGCTATGGTGCATCGACTACTTTGGGTGGGTCGGCGGACATGAGTGGATTCGGTCTCACTATCCCTCCGAATCCATTATCCGGCGATCCGC----------------------
//
Image source CNC05770, CNAG_02967:
# STOCKHOLM 1.0
#=GF RW van Nues, August 2023
#=GF https://coalispr.codeberg.page/paper
Target-found/1-13 -----------------------------------------------------------GAGTGGATTTGGT-----------------------------------------------
SNORD17/1-18 -----------------------------------------------------AGTC-tCTTACCTAAATCG-----------------------------------------------
#=GS CNC05770/1-119 DE AE017343.1:1713087-1713205 Cryptococcus neoformans var. neoformans JEC21 chromosome 3 sequence
CNC05770/1-119 GACCCAAAATGGGTTCCGCTTGATACCTCTAGCATTTACGAAGTGAGCTTGATGTGCAGGAGTGGATTTGGTGAACAAGAAGGGGATTTTGGGGTGATCGTCACTGGCATTTCTGCTTG
#=GS CNAG_02967/1-119 DE CP003822.1:c320125-320007 Cryptococcus neoformans var. grubii H99 chromosome 3, complete sequence
CNAG_02967/1-119 GACCCCAAATGGGTGCCGCTTGATACCTCTAGCATTTATGAAGTGAGCTTGATGTGCAGGAGTGGATTTGGTAAACAAAAAGGGGACTTCGGGGTGATCGTCACTGGCATTTCTGCTTG
#=GS R265/1-119 DE CP025759.1:1902137-1902255 Cryptococcus gattii VGII R265 chromosome 1, complete sequence
R265/1-119 GACCCCAAATGGGTACCGCTGGACACCTCTAGCATTTACGAAGTGAACTTGATGTGCAGGAGTGGATTTGGTCAGCAAGAAGGGGACTTTGGGGTGATCGTTACTGGCATTTATGCCTG
#=GS WM276/1-119 DE CP000288.1:1662908-1663026 Cryptococcus gattii WM276 chromosome C, complete sequence
WM276/1-119 GACCCCAAATGGGCACCGCTTGACACCTCTAGCATTTACGAAGTGAACTTGATGTGCAGAAGTGGATTTGGTCAGCAAGAAGGGGACTTTGGGGTGATCGTTACTGGCATTTATGCCTG
#=GS CryWin/1-116 DE CP034262.1:c508741-508626 Cryptococcus wingfieldii strain CBS7118 chromosome 2, complete sequence
CryWin/1-116 GACCCTCAGTGGGTACCGCTCGATACAAGCAATATCTATGAGGTCAGCTTGATGTGTAGGAGTGATTTCGGGCAGCAGGAAGGTGACTTTGGGGTGATTGTGACCGATATCTCTGC---
#=GS CryAmy/1-116 DE MEKH01000001.1:1701446-1701561 Cryptococcus amylolentus CBS 6273 supercont2.1, whole genome shotgun sequence
CryAmy/1-116 GACCCTCAGTGGGTACCGCTCGATACGAGCAGTATCTATGAGGTCAGCTTGATGTGTAGGAGTGATTTCGGGCAGCAGGAAGGTGACTTTGGGGTGATTGTGACCGATATCTCTGC---
#=GS BulAlb/1-83 DE BCIX01000001.1:6081000-6081082 Bulleromyces albus DNA, scaffold: scaffold_0, strain: JCM 2954, whole genome shotgun sequence
BulAlb/1-83 --------ATACGAGCCGTTCCACAGCGAGAAGATATACGAGTTGAGCTTGATGTGCAGGAGCGGGTTTGGAGAGCAGAAAGGGGACTTTG----------------------------
//
Image source CNC06640, CNAG_01518:
# STOCKHOLM 1.0
#=GF RW van Nues, August 2023
#=GF https://coalispr.codeberg.page/paper
Target-found/1-14 -----------------------------------------------GGATGGGTTTGGTT-----------------------------------------------------------
SNORD17/1-19 -----------------------------------------AGTC-tCTTACCTAAATCGA-----------------------------------------------------------
#=GS CNC06640-3UTR/1-117 DE AE017343.1:c1937674-1937558 Cryptococcus neoformans var. neoformans JEC21 chromosome 3 sequence
CNC06640-3UTR/1-117 AGAAAACTGCGACTTTTTTTAGCTCGAACTGGATAG-AT-CAAAATTGGATGGGTTTGGTTCGACGAAATACAATTTTTCTGGTTGATGCATCCAGGTG-CACACATGTTAATATACTTT
#=GS CNAG_01518/1-116 DE phosphoglycerate mutase CP003830.1:168975-169090 Cryptococcus neoformans var. grubii H99 chromosome 11, complete sequence
CNAG_01518/1-116 --AAGACTGCGACCCTTTT-AGCTGGAAC-GGAGTATATAAAAAAACAGATGGATTTGGTTCGACGATATACAACTTTTCTGATTGATGCATCCAGGTAACACACATATTCATATACTTT
//
Image source CND00190, CNAG_07453:
# STOCKHOLM 1.0
#=GF RW van Nues, August 2023
#=GF https://coalispr.codeberg.page/paper
Target-found/1-13 -----------------------------------------------------------GAGTGGATTTGGT-----------------------------------------------
SNORD17/1-18 -----------------------------------------------------AGTC-tCTTACCTAAATCG-----------------------------------------------
#=GS CND00190/1-119 DE XM_570339.2:681-799 AE017344.1:64987-65105 Cryptococcus neoformans var. neoformans JEC21 chromosome 4 sequence
CND00190/1-119 TTGTGCAGTGTCAAATGATGGCTCGGTCAGTGCTTGGGTTTATCCTGTAGAGAGTGTGCGAGTGGATTTGGTAGAGGAGCAAGTAGAGCCGGAGCCGGAGCAAGAACGAGAACAAGAAC
#=GS CNAG_07453/1-119 DE CP003824.1:c1737919-1737801 Cryptococcus neoformans var. grubii H99 chromosome 5, complete sequence
CNAG_07453/1-119 TTGTGCAGTGTCAAATGATGGCTCGGTCAGTGCTTGGATTTATCCTGTAGAGAGTGTGCGAGTGGATTTGGCAGACGAGCAAATGGAGCCGGAGCAAGAACAAGAACAAGAACAAGAAC
#=GS R265/1-115 DE CP025772.1:45515-45629 Cryptococcus gattii VGII R265 chromosome 14, complete sequence
R265/1-115 TTGTGCAGTGTCGAATGATGGCTCGGTCAGTGCTTGGGTTTATCCTCCAGAGAGCGTGCGCTTGGATAT---GACAGAGCAAGTGGAACCGGAGCAAGAACAAGGACAAGAACAAGAA-
#=GS WM276/1-114 DE CP000295.1:c459282-459169 Cryptococcus gattii WM276 chromosome J, complete sequence; XM_003196439.1:627-740 Cryptococcus gattii WM276 uncharacterized protein (CGB_J2370C), partial mRNA
WM276/1-114 TTGTGCAGTGTCGAATGATGGCTCGATCAGTGCTTGGGTTTATCCTCTAGAGAGCGTGCGCTTGGATGT---GATAGAGCAAATGGAACCGGAGCAAGAACAAGGACAAGAACAAGA--
//
Image source CNE02740, CNAG_02270:
# STOCKHOLM 1.0
#=GF RW van Nues, August 2023
#=GF https://coalispr.codeberg.page/paper
target-found/1-13 -----------------------------------------------------------GGGTGGATTTGGC----------------------------------------------
SNORD17/1-18 -----------------------------------------------------AGTC-tCTTACCTAAATCG----------------------------------------------
#=GS CNE02740/1-118 DE AE017345.1:728588-728705 Cryptococcus neoformans var. neoformans JEC21 chromosome 5 sequence
CNE02740/1-118 CACTTCCTCCCGCCCACATCTCCGCAGCTCCCACCAAGGAGGAAACCAGCGTTCAATCCGGGTGGATTTGGCCTCCAGAGTCAGCCGGCCCCGGCACCGGCTCCCACTTCGGCCTGGG
#=GS CNAG_02270/1-117 DE homoserine O-acetyltransferase CP003825.1:733335-733451 Cryptococcus neoformans var. grubii H99 chromosome 6, complete sequence
CNAG_02270/1-117 CACTTCCTCCCGCCCACATCTCCACAACTCCCACCACGGAGGAAACCAGCATTCAGCCCAGGTGGATTCGGCCTCCAGAGTCAGCCGGCCCCAGCACCCGCTCCCACTTCGGCCTGG-
#=GS WM276/1-118 DE CP000290.1:688036-688153 Cryptococcus gattii WM276 chromosome E, complete sequence
WM276/1-118 CATTTCCACCCGCCCACGTCTCCACAGCTCCCACCAAGGAGACAGCCAGCATTCAATCCAGGTGGATTCGGACTCCAGAGTCAGCCGGCCCCGGCGCCGGCTCCCACTTCGTTCTGGG
#=GS R265/1-118 DE CP025764.1:c631781-631664 Cryptococcus gattii VGII R265 chromosome 6, complete sequence
R265/1-118 CATTTCCACCCGCCCACGTCTCCACAGCTCCCACCAAGGAGACAGCCAGCATTCAATCCAGGTGGATTCGGACTCCAGAGTCAGCCGGCACCGGCACCAGCTCCCACGTCGTTCTGGG
#=GS CryWin/1-77 DE CP034266.1:672657-672733 Cryptococcus wingfieldii strain CBS7118 chromosome 6, complete sequence
CryWin/1-77 CAGTTCAACCCCCCCGTCTCTCCCCAGCTCCCCCCCAGGCGCCAGCCAGCATTCAGCCCAGGAGGATTCGGCCTACA-----------------------------------------
//
Image source CNG01950, CNAG_03390:
# STOCKHOLM 1.0
#=GF RW van Nues, August 2023
#=GF https://coalispr.codeberg.page/paper
Target-found/1-13 ----------------------------------------------GAATGGGTTTGGT-----------------------------------------------------------
SNORD17/1-18 ----------------------------------------AGTC-tCTTACCTAAATCG-----------------------------------------------------------
#=GS CNG01950/1-118 DE AE017347.1:c548042-547925 Cryptococcus neoformans var. neoformans JEC21 chromosome 7 sequence
CNG01950/1-118 GCTGAACGTCGTTACTCGACCGCCCATAAACTTGGATAGCCCAAGAGAATGGGTTTGGTGCAAAGCTGCTATCAAGGAGGCACTCAGTAAGACTTCTCTAGCTGTTGTCTTCTGCATA
#=GS CNAG_03390/1-105 DE AAA family ATPase CP003827.1:828361-828465 Cryptococcus neoformans var. grubii H99 chromosome 8, complete sequence
CNAG_03390/1-105 ------------TACTCGACCGCCCATAGACTTGGATAGCCCAAGGGAATGGGTTTGGTGCAAAGCTGCTGTCAAGGAGGCACTCAGTAAGACCGGTCTAGCCGATGTCTCTACATA-
#=GS R265/1-104 DE CP025765.1:726261-726364 Cryptococcus gattii VGII R265 chromosome 7, complete sequence
R265/1-104 GCTGAACAATGGTGCTCGACCGCCCATAGACTTGAATAGCCCAAGAGAACGGGTTTGGTGCAAGGCTGCTATCAAGGAAGCTCTCAGTAAGGCTGGTCCAGCTG--------------
#=GS WM276/1-90 DE CP000292.1:794673-794762 Peroxisome biosynthesis protein PAS1 Cryptococcus gattii WM276 chromosome G, complete sequence
WM276/1-90 --------------CTCGACCGCCCATAGACTTGAATAGCCCAAGAGAACGGGTTTGGTGCAATGCTGCTATCAAGGAAGCTCTCAGTAAGGCTGGTCCAGCTG--------------
//
Image source snR61-SNORD38:
# STOCKHOLM 1.0
#=GF RW van Nues, August 2023
#=GF https://coalispr.codeberg.page/paper
Target-found/1-13 -----------------------------------------------GAGTGGGTTTGGC----------------------------------------------------------
SNORD17/1-18 -----------------------------------------AGTC-tCTTACCTAAATCG----------------------------------------------------------
#=GS CNH01640/1-118 DE ATPase AE017348.1:c671450-671333 Cryptococcus neoformans var. neoformans JEC21 chromosome 8 sequence
CNH01640/1-118 AAATGGGCAGAGCAATTCGGCGAGGGCGGTAAGAGGAGAGGGAAGAAGAGTGGGTTTGGCAAAGGTTTTGGTTTTTCAGATGAGCCGGTGCGAGATAGGGATACGGGATACGGAAAGG
#=GS CNAG_05511/1-118 DE CP003833.2:512512-512629 Cryptococcus neoformans var. grubii H99 chromosome 14, complete sequence
CNAG_05511/1-118 AAATGGGCAGAGCAATTCGGCGAGGGTGGTAAGAGGAGAGGGAAGAAAAGTGGGTTTGGCAAGGGCTTTGGGTTTTCAGATGAGCCAGTGCGAGATAGAGATACGGGATACGGAAAGG
#=GS R265/1-118 DE CP025768.1:405169-405286 Cryptococcus gattii VGII R265 chromosome 10, complete sequence
R265/1-118 AAATGGGCAGAGCAGTTTGGTGAAGGCGGGAAGAGGAGGGGGAAGAAGAGTGGGTTTGGGAAAGGTTTTGGATTTTCAGATGAGCCGGTGAAAGATAGGGATACGGGATACGGAAAGG
#=GS WM276/1-118 DE CP000297.1:404907-405024 Cryptococcus gattii WM276 chromosome L, complete sequence
WM276/1-118 AAATGGGCAGAGCAGTTTGGTGAAGGTGGGAAGAGGAAAGGGAAGAAGAGTGGGTTTGGGAAAGGTTTTGGATTTTCAGATGAGCCGGTGAAAGATAGGGATACGGGATACGGAAAGG
#=GS CryWin/1-75 DE CP034268.1:882377-882451 Cryptococcus wingfieldii strain CBS7118 chromosome 8, complete sequence
CryWin/1-75 AAATGGGCAGAGCAATTCGGAGAAGGCGGCAAGAGAAAGGGAAGAAAGAGTGGATTCGGCAAAGGCTTCGGGTTT-------------------------------------------
//
Image source CNI01280, CNAG_07769:
# STOCKHOLM 1.0
#=GF RW van Nues, August 2023
#=GF https://coalispr.codeberg.page/paper
Target-found/1-13 ----------------------------------------------------------GGGTGGATTTAGC----------------------------------------------
SNORD17/1-18 ----------------------------------------------------AGTC-tCTTACCTAAATCG----------------------------------------------
#=GS CNI01280/1-117 DE ubiquitin-protein ligase AE017349.1:323514-323630 Cryptococcus neoformans var. neoformans JEC21 chromosome 9 sequence
CNI01280/1-117 CGCAGGAAGAACGATCCCGTTTCCTTATGTTCGTCACATCATCTTCCAGGGTTCCTTTGGGTGGATTTAGCCAGCTGCAAGGCAGCTCAGGTACCCAACCTCTGCAGCTTCAAAAGG
#=GS CNAG_07769/1-115 DE CP003828.1:c840890-840776 Cryptococcus neoformans var. grubii H99 chromosome 9, complete sequence
CNAG_07769/1-115 --CAGGAAGAACGATCCCGCTTCCTTATGTTCGTCACATCATCTTCCAGAGTTCCTCTGGGTGGATTTAGCCAGCTACAAGGCAGCTCAGGTACTCAACCTCTGCAGCTTCAAAAGG
#=GS R265/1-115 DE CP025766.1:c829067-828953 Cryptococcus gattii VGII R265 chromosome 8, complete sequence
R265/1-115 --CAGGAAGAACGATCACGTTTCCTTATGTTTGTCACATCATCTTCCAGGGTTCCTTTGGGTGGATTTAGCCAGCTACAAGGCAGCTCAGGGACGCAGCCTCTGCAGCTTCAAAAGG
#=GS WM276/1-115 DE CP000293.1:426114-426228 Cryptococcus gattii WM276 chromosome H, complete sequence
WM276/1-115 --CAGGAAGAACGATCACGTTTCCTTATGTTTGTCACATCATCTTCCAGGGTTCCTCTGGGTGGATTTAGCCAGCTACAAGGCAGCTCAGGGACGCAGCCTCTGCAGCTTCAAAAGG
#=GS TreMes/1-80 DE XM_007001922.1:9867-9946 Tremella mesenterica DSM 1558 uncharacterized protein (TREMEDRAFT_70589), mRNA
TreMes/1-80 --CAAGAAGAGCGCGCTCGCTTCCTCATGTTTGTCACCTCGTCATCCCGGGTCCCTCTTGGCGGCTTCACCCAGCTACAAGG-----------------------------------
//
Image source CNI02070, CNAG_04343:
# STOCKHOLM 1.0
#=GF RW van Nues, August 2023
#=GF https://coalispr.codeberg.page/paper
Target-found/1-13 -----------------------------------------------------------GAGTGGATTTGGC-----------------------------------------------
SNORD17/1-18 -----------------------------------------------------AGTC-tCTTACCTAAATCG-----------------------------------------------
#=GS CNI02070/1-119 DE AE017349.1:572678-572796 Cryptococcus neoformans var. neoformans JEC21 chromosome 9 sequence
CNI02070/1-119 CCCCAACATTTGGACATCATATCTCTATTACGACGCTCCCCGTTACGTTGCGGCATTCGGAGTGGATTTGGCCGCCAGTGTTTTGACTATTGCTTTCGCAGCGTTAACTTACCTTTATC
#=GS CNAG_04343/1-119 DE CP003828.1:c622592-622474 Cryptococcus neoformans var. grubii H99 chromosome 9, complete sequence
CNAG_04343/1-119 CCCCAACATTTGGACATCGTATCTCTATTACGACTCTCCCCGTTATGTCGCGGCATTCGGAGTAGATTTAGCTGCCAGTGTTTTGACTATTGCTTTCGCGGCTTTGACTTACCTTTATC
#=GS R265/1-118 DE CP025766.1:662794-662911 Cryptococcus gattii VGII R265 chromosome 8, complete sequence
R265/1-118 -CCCAATATTTGGACATCATATCTCTATTACGACTCTCCTCGTTACATTGCGGCATTCGGAGTGGATTTGGCTGCCAGTGTCTTGACTATCGCTTTCGCCGCTTTAACTTATCTTTATC
#=GS WM276/1-119 DE CP000293.1:657793-657911 Cryptococcus gattii WM276 chromosome H, complete sequence
WM276/1-119 CCCCAACATTTGGACATCATATCTCTATTACGACTCTCCTCGTTACATAGCGGCCTTCGGGGTGGATTTGGCTGCCAGCGTCTTGACTATCGCTTTCGCAGCTTTGACTTATCTTTATC
#=GS CryWin/1-119 DE CP034273.1:c389493-389375 Cryptococcus wingfieldii strain CBS7118 chromosome 13, complete sequence
CryWin/1-119 CCCAAACATCTGGACATCCTACCTCTACTTCAAGTCCCCACAATACGTCGCCGCCTTCGGCGTCGACCTCGCTGCCAGTGTCCTCACTATCATTTTTGCCGCTTGGACGTACATGTATC
//
Image source CNI02250, CNAG_04324:
# STOCKHOLM 1.0
#=GF RW van Nues, August 2023
#=GF https://coalispr.codeberg.page/paper
Target-found/1-13 -----------------------------------------------GAATGGATTTGGC-----------------------------------------------------------
SNORD17/1-18 -----------------------------------------AGTC-tCTTACCTAAATCG-----------------------------------------------------------
#=GS CNI02250/1-119 DE protein-vacuolar targeting-related protein AE017349.1:c622810-622692 Cryptococcus neoformans var. neoformans JEC21 chromosome 9 sequence
CNI02250/1-119 AAAAGAATGTAGGAAATACCTTGAAGACGAGGCAATCCGAGTGTACGGAATGGATTTGGCAGACGTGGTTGTGATTAGTGGTCAAAGCATAGAAATGAATAAGGCAGGAAGAACCGGAG
#=GS CNAG_04324/1-119 DE CP003828.1:569999-570117 Cryptococcus neoformans var. grubii H99 chromosome 9, complete sequence
CNAG_04324/1-119 AAAAGAATGTAGGAAATACCTTGAAGACGAGGCAATCCGGGTGTACGGGATGGATTCGGCAGACGTGATTGTGATTAGTGGTGAAAGCATAGAAATGAATAAGGCAGGAAGACCTGGAG
#=GS R265/1-119 DE CP025766.1:560654-560772 Cryptococcus gattii VGII R265 chromosome 8, complete sequence
R265/1-119 AAAAGAATGTAGGAAGTACCTTGAAGACGAGGCAGTCCGAGTGTACGGGATGGATTCGGCAGAAGTGATTGTGGTCGGTAGTCAAAGCATGGAAATGGAAAAGGCAGGGAGATCTGGAG
#=GS WM276/1-119 DE CP000293.1:c707217-707099 Cryptococcus gattii WM276 chromosome H, complete sequence
WM276/1-119 AAAAGAATGTAGGAAGTATCTTGAAGACGAGGCAGTCCGAGTGTACGGAATGGATTCGGCAGAAGTGATTGCGGTCGGTAGTCAAAGCATGGAAATGGATAAGGCAGGGAGGCCTGGAG
#=GS CryWin/1-70 DE XM_019176998.1:1552-1622 Tsuchiyaea wingfieldii CBS 7118 hypothetical protein (L198_04895), partial mRNA
CryWin/1-70 ----GAATGTAGAAAGTATCTGGAGGACGAAGCGATCAGGGTGTATGGGATGGATCGGAGGATATTGGAGTTGT---------------------------------------------
//
Image source CNI02570, CNAG_04291:
# STOCKHOLM 1.0
#=GF RW van Nues, August 2023
#=GF https://coalispr.codeberg.page/paper
Target-found/1-13 -----------------------------------------------GGATGGGTTTGGC-----------------------------------------------------------
SNORD17/1-18 -----------------------------------------AGTC-tCTTACCTAAATCG-----------------------------------------------------------
#=GS CNI02570/1-119 DE pAE017349.1:c698083-697965 Cryptococcus neoformans var. neoformans JEC21 chromosome 9 sequence
CNI02570/1-119 TAGCGTCCTGATGGCGTTGGGTGTAAGTATCCTCGGGGCCGTTTTCGGGATGGGTTTGGCGCTTTAGGATATGTTGATGGCAAGCAAATCGTTCCAAGGGGGTGGCAGCGGACACTGGC
#=GS CNAG_04291/1-114 DE glycosyl-hydrolase CP003828.1:494965-495078 Cryptococcus neoformans var. grubii H99 chromosome 9, complete sequence
CNAG_04291/1-114 --GCGTCCTGATGACGTTGAGTGTAGGTATCCTAGGGACCGTTTTGGGTATGGGTTTGGCGCTTTAGGGCGTCGATGGTAGGCAAATCCTTCTAGGGGGTGGTAACGGACACTGGC---
#=GS R265/1-85 DE CP025766.1:484301-484385 Cryptococcus gattii VGII R265 chromosome 8, complete sequence
R265/1-85 --GCGTCTTGATAGGCGTGGCTGTAGGTATCCTTGGGACCGTTTTGGGGATGGGTTTGGCGTTTTAGAGGGGGTGGGGTTGGGGGCT--------------------------------
#=GS WM276/1-74 DE CP000293.1:c783526-783453 Cryptococcus gattii WM276 chromosome H, complete sequence
WM276/1-74 -------------GGCGTGGCTGTAGGTATCCTTGGGACCGTTTTGGGGATGGGTTTGGCGTTTTAGACGGGGGCGGGGTTGATGAC--------------------------------
//
Image source CNJ02560, CNAG_04832:
# STOCKHOLM 1.0
#=GF RW van Nues, August 2023
#=GF https://coalispr.codeberg.page/paper
Target-found/1-13 -----------------------------------------------GAATGGGTTTGGC-----------------------------------------------------------
SNORD17/1-18 -----------------------------------------AGTC-tCTTACCTAAATCG-----------------------------------------------------------
#=GS CNJ02560/1-119 DE signal transducer AE017350.1:c743869-743751 Cryptococcus neoformans var. neoformans JEC21 chromosome 10 sequence
CNJ02560/1-119 TTCTGATCGAGAGGATGTCCCTGTCATCGCTGAGAACAAGGAAGAAGGAATGGGTTTGGCGTCCCCCGCCGAGGTGCAGCCTACGGGACTGTTGCCCTCTGCGATACCGGATCGCAGGC
#=GS CNAG_04832/1-119 DE RalA-binding protein 1 CP003829.1:288629-288747 Cryptococcus neoformans var. grubii H99 chromosome 10, complete sequence
CNAG_04832/1-119 TTCTGATCGAGAGGATGTACCCGTCATTGCTGAGAGTAAGGAAGAAGGACCGGGATTGGGTTCCCCCAAGGAGCTGCAGCCTACAGGACTGTTGCCCTCTGCCATACCGGATCGCAAGC
#=GS WM276/1-113 DE CP000294.1:c716397-716285 Cryptococcus gattii WM276 chromosome I, complete sequence
WM276/1-113 TTCTGATCGAGAAGATGTTCCTGTCATTGCTGAGAA---GGAAGAAGGAAAAGGATTGGCGTCCCCCGTAGAGGTACAGCCTACGGGACTGTTGCCCTCTGCCATATTGGATCGCA---
#=GS R265/1-113 DE CP025767.1:c699666-699554 Cryptococcus gattii VGII R265 chromosome 9, complete sequence
R265/1-113 TTCTGATCGAGAAGATGTTCCTGTCATTGCTGAGAA---GGAAAAAGGAAAAGGATTGGCGTCCCCCACAGAGGTACAGCCTACGGGACTGTTGCCCTCTGCCATATTGGATCGCA---
//
Image source CNN00750, CNAG_06345 5’SS:
# STOCKHOLM 1.0
#=GF RW van Nues, August 2023
#=GF https://coalispr.codeberg.page/paper
Target-found/1-13 ---------------------------------------------GGGTGGGTTTAGC------------------------------------------------------------
SNORD17/1-18 ---------------------------------------AGTC-tCTTACCTAAATCG------------------------------------------------------------
#=GS CNN00750-5SS/1-116 DE MDM10 AE017356.1:c238307-238192 Cryptococcus neoformans var. neoformans JEC21 chromosome 14 sequence
CNN00750-5SS/1-116 ATGATGAGAGGGATGGAGTACTAAAGGCCAGATTATCGGGTAACTGGGTGGGTTTAGCAATTATCAAG-TCAAGTGGAGGTGCTGACGG-TCTCTAGCAATTCGCACTCTTGTACGAG
#=GS CNAG_06345/1-117 DE mitochondrial distribution and morphology protein 10 CP003832.1:c252950-252834 Cryptococcus neoformans var. grubii H99 chromosome 13, complete sequence
CNAG_06345/1-117 ATGACGAGAGGGATGGAGTATTAAAGGCTAGGTTATCGGGTAACTGGGTGGGTTCACCAATTATTAAGCTCAAGTGGAGGTGCTGACGG-TCTATAGCAATTTGCACTCTTGTACGAG
#=GS WM276/1-116 DE CP000299.1:c204164-204049 Cryptococcus gattii WM276 chromosome N, complete sequence
WM276/1-116 ATGATGAGAGGGATGGAGTACTAAAGGCCAGGTTATCGGATAACTGGGTGGGTTCATTAATTACC-AGCTGAAATGGCGGTGCTGACGG-TCTCTAGCAATTTGCATTCTTGTACGAG
#=GS R265/1-117 DE CP025771.1:450575-450691 Cryptococcus gattii VGII R265 chromosome 13, complete sequence
R265/1-117 ATGATGAGAGAGATGGAGTACTAAAGGCCAGGTTATCGGATAACTGGGTGGGTTCATTAATTACC-AGCTGAAATGGCGGTGCTGACGGGTCTCTAGCAATTTGCATTCTTGTACGAG
#=GS CryWin/1-84 DE CP034263.1:1412706-1412789 Cryptococcus wingfieldii strain CBS7118 chromosome 3, complete sequence
CryWin/1-84 ATGATGAGCGAGATGGAGTCCTCAAGGCGAGATTTTCAGGCAACTGGGTGAGTTCTACACGTGTATGCTGTTCTACCTGCTGAC----------------------------------
Annot/1-13 -----------------------------------------------GTGrGT-----------------------------CTGA--------YAG---------------------
//