snR64-SNORD74¶
snR64-SNORD74_intronic-boxCDsnoRNA-105nt
Within an intron of CND04750 (CNAG_01359) for DNA-directed RNA polymerase II subunit RPB7
C. neoformans
Predicted target in 25S rRNA: tgtCcctatct
The role of the conserved section upstream of the D box is not clear; it does not support the base-pairing of the accessory guide in yeast. The only complimentary rRNA section (AGTTGTTGCAG) forms the junction between 3’ h3 and 5’-h19 in 18S rRNA.
>AE017344.1:c1303848-1303752 Cryptococcus neoformans var. neoformans JEC21 chromosome 4 sequence ATCTATGATGAACATTATGCATAGGGACAACAGATCTTTCGGGAATGTTGATTTATGCGGGACGATCTTG TAGTAATTGATCGATTAGTTCCTGATC
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# STOCKHOLM 1.0
#=GF RW van Nues, June 2023
#=GF https://coalispr.codeberg.page/paper
Annot/1-45 -------RTGATGA---------UCUAUCCCUGU-CTGA----------------RTGATGA----------------------RRYRTYRTTRR---------------CTGA--------
#=GS snR64-SNORD74/1-105 DE intronic-boxCDsnoRNA-105nt-in-CND04750 ncrna 4:1303746:1303850:-1
snR64-SNORD74/1-105 TCCATCTATGATGAACATTA--TGCATAGGGACAACAGATCTT---TC---GGGAATGTTGATTTATGC--GGGA----CGATCTTGTAGTAATTGATCG-ATTAG-TTCCTGATCTTTTT-
#=GS H99/1-105 DE NPNB01000010.1:506804-506908 Cryptococcus neoformans var. grubii strain H99 Chr_5, whole genome shotgun sequence
H99/1-105 TCCATCTATGATGAACATTA--TGCATAGGGACAACAGATCTT---TC---GGGAATGTTGATTTATGC--GGGA----CGATCTTGTAGTAATTGATCG-ATTAG-TTCCTGATCCTTTT-
#=GS R265/1-97 DE CP025760.1:c1704105-1704009 Cryptococcus gattii VGII R265 chromosome 2, complete sequence
R265/1-97 ---ATCTATGATGAACAATA--TGCATAGGGACAACAGATCTT---TC---GGGAATGTTGATTTATGC--GGGAA---CGATCTTGTAGTAATTGATCG-ATTAG-TTCCTGAT-------
#=GS WM276/1-97 DE CP000289.1:c1755281-1755185 Cryptococcus gattii WM276 chromosome D, complete sequence
WM276/1-97 ---ATCTATGATGAACATA---TGCATAGGGACAACAGATCTT---TC---GGGAATGTTGATTTATGC--GGGAA---CGATCTTGTAGTAATTGATCG-ATTAG-TTCCTGATC------
#=GS KwoPin/1-106 DE ASCL01000030.1:964594-964699 Kwoniella pini CBS 10737 cont1.30, whole genome shotgun sequence
KwoPin/1-106 ----TCTATGATGAATAATATATGCATAGGGACAGCAGACCCCCTAATATGGGGAATGTTGAT-TATGCCTGGG-----TGATCTTGTAGTAATTGATCG-ATTA--TCTCTGAACTTT---
#=GS CryWin/1-102 DE AWGH01000011.1:c435581-435480 Cryptococcus wingfieldii CBS 7118 supercont1.11, whole genome shotgun sequence
CryWin/1-102 TCCATCTATGATGAA-TTTA--AGCATAGGGACAACAGATCCT---GC---GGGAATGTTGATTTATGC--GGGAA----GATCTTGTAGTAATTGATCG-ATTTT-TCTCTGAGCCTC---
#=GS NaeEnc/1-99 DE MCFC01000063.1:c22642-22540 Naematelia encephala strain 68-887.2 BCR39scaffold_63, whole genome shotgun sequence
NaeEnc/1-99 ----TTCGTGATGAGAGTA---AGCATAGGGACAACAGACCT---TTT---GGGAATGTTGATTTATGC--GGGA----TGATCTTGTAGTAATTGATCG-ATTA---TCCTGAAACCACCC
#=GS PapLau/1-97 DE JDSR01000573.1:56208-56304 Papiliotrema laurentii RY1 contig_594, whole genome shotgun sequence
PapLau/1-97 ----TCTGTGATGACAAAAA--AGCATAGGGACAACAGACCT----TC---GGGAATGTTGAG-TATGCC-GGGA----CGATCTTGTAGTAATTGATCG-ATTG-TTTCCTGATCCA----
#=GS TreMes/1-101 DE AFVY01000234.1:160150-160250 Tremella mesenterica DSM 1558 strain Fries TREMEscaffold_7_Cont234, whole genome shotgun sequence
TreMes/1-101 -----TAATGATGAACACGA--AGCATAGGGACAACAGATCTT---TT--AAGAAATGTTGATTTATGC--GGGAAAA-CGATCTTGTAGTAATTGATCG-AATA--TTTCTGAATCTT---
#=GS CutCut/1-97 DE LTAL01000436.1:1934-2030 Cutaneotrichosporon cutaneum strain ACCC 20271 contig436, whole genome shotgun sequence
CutCut/1-97 ---TTTCGTGATGAGCATT---TGCATAGGGACAACAGACT----ATCG---AGTATGTTGATTTATGCT-GGGA-----GATCTTGTAGTAATTGATCA--TTA--TCTCTGAACCCAA--
#=GS ApiAKi/1-96 DE PQXP01000122.1:c34870-34775 Apiotrichum akiyoshidainum strain HP2023 Contig954, whole genome shotgun sequence
ApiAKi/1-96 ---TTTCATGATGAGCTTT---TGCATAGGGACAACAGACTT----GC---GAGTATGTTGATTTATGCT-GGGA-----GATCTTGTAGTAATTGATCA-TTAA--TCTCTGAACCC----
#=GS ApiSia/1-96 DE JALJEG010000081.1:c29188-29093 Apiotrichum siamense strain L8in5 NODE_81_length_38975_cov_10.593647, whole genome shotgun sequence
ApiSia/1-96 ---TTTCATGATGAGCCTTA--TGCATAGGGACAACATACTC----TC---GAGAGTGTTGAA-TATGCT-GGGA-----GATCTTGTAGTAATTGATCA-TTTT--TCTCTGAAAAG----
#=GS PasPl2/1-96 DE JAMFRE010000009.1:c14096-14001 Pascua sp. PL2904B ctg_9, whole genome shotgun sequence
PasPl2/1-96 ----ACTATGATGAGCGTTT--TGCATAGGGACAACAGACCT----TC---GGGAGTGTTGATTTATGCC-GGGA-----GATCTTGTAGTAATTGATCA-CACA--TCTCTGATTCA----
#=GS CutCur/1-97 DE NIUX01000023.1:c327816-327720 Cutaneotrichosporon curvatum strain ATCC 10567 Contig023, whole genome shotgun sequence
CutCur/1-97 ---TTTCGTGATGAGCAAAA--TGCATAGGGACAACAGACCT----TC---GGGCGTGTTGAG-TATGCC-GGGA-----GATCTTGTAGTAATTGATCA-CACAT-TTTCTGATCCT----
#=GS KwoSha/2-100 DE NQVO01000010.1:11556-11655 Kwoniella shandongensis strain CBS 12478 scaffold00010, whole genome shotgun sequence
KwoSha/2-100 -----TTATGATGAATTTT---AGCATAGGGACAACAGACCTTTT-AAT-AGGGCATGTTGATTTATGC--GGG-----TGATCTTGTAGTAATTGATCG-ATTA--TCACTGAACTCC---
#=GS CryFla/1-101 DE CAUG01000632.1:c257013-256913 Cryptococcus flavescens NRRL Y-50378 WGS project CAUG00000000 data, contig NODE_1893_length_347047_cov_46_114624, whole genome shotgun sequence
CryFla/1-101 ---ATCTGTGATGACAAGCA--AGCATAGGGACAACATACTCT---CG----AGAGTGTTGAT-TATGCC-GGGA----CGATCTTGTAGTAATTGATCG-ATTGTTTATCTGATTCTCC--
#=GS DioCro/1-95 DE BCKK01000002.1:890957-891051 Dioszegia crocea DNA, scaffold: scaffold_1, strain: JCM 2961, whole genome shotgun sequence
DioCro/1-95 ----TCTATGATGAGTTATT--AGCATAGGGACAGCAGACCT----TT---GGGAATGTTGATTTATG---GAAAAA---GATCTTGTAGTAATTGATCA---TAA-CTTCTGATACC----
Annot-SacCer/1-39 -------RTGATGA---------UCUAUCCCUGU-CTGA-----------------TGATGA-------------------------AUCAUCU----------------CTGA--------
SacCer-snR64/1-100 ----TGTATGATGAGGAAC---CAGATAGGGACAACAGATT----CTC-----AAGTGACGAGGAACATCTTTTAAAGCCCAGTTTTTAGTAGAGCTTAGGGCGCCTTTACTGACT------
HomSap-SNORD74/1-72 -CTGCCTCTGATGAAGCCTGTGTTGGTAGGGACATCTGAGAGTAA-----------TGATGAAT-------------GCCAACCGCT-----------------------CTGATGGTGG--
#=GC SS_cons/1-16 ----------------------------------------(((------)))----------------------------((((-----------))))----------------------
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