Loci with complementarity to snRcnf04440

Target	Found @			Possible mRNA target [1]			Genes
	Motif	JEC21	H99	Orientation	Overlap	Conserved	JEC21	H99	Gene-product
GyyYyAGyAGTG
GTTTCAGCAGTG		1:543025-543036:-1		as-guide	exon		CNA02030
		3:126013-126024:1		as-guide	exon		CNC00440
GTCTCAGTAGTG	‘SSLS’	1:645209-645220:-1		target	CDS exon	no	CNA02460	CNAG_00257	kinesin family member 21A
GCTTTAGCAGTG		1:1239269-1239280:1		as-guide	exon		CNA04670
GTCCCAGCAGTG		3:574211-574222:1		as-guide	exon		CNC02050
GTTCCAGCAGTG	‘GSSS’	3:1514360-1514371:-1		target	CDS exon	no	CNC05030	CNAG_02890	DRBM domain-containing protein
		3:1689342-1689353:-1		as-guide	exon		CNC05680
GCCCTAGCAGTG		3:1541584-1541595:-1		as-guide	exon		CNC05130
GCCTCAGTAGTG		4:492524-492535:-1		as-guide	exon		CND01820
GCCTCAGCAGTG		4:1405481-1405492:-1		as-guide, intergenic					not annotated transcript, poss. non-coding
		6:68749-68760:1		as-guide	exon		CNF00220
GTCCCAGTAGTG		5:650902-650913:-1		as-guide	exon		CNE02430
GTTCTAGTAGTG		6:587581-587592:1		intergenic
		9:111606-111617:-1		intergenic
GCCCCAGCAGTG		4:1028984-1028995:-1		as-guide	exon		CND03720
	‘APAV’	7:1018673-1018684:1		target	CDS exon	yes	CNG03635	CNAG_07718	Actin cytoskeleton-regulatory complex protein PAN1
GCTTTAGTAGTG		3:241614-241625:-1		as-guide	intron		CNC00845
	‘ALVV`	7:1337258-1337269:-1		target	CDS-exon	no	CNG04675	CNAG_03097	Uncharacterized protein
		8:607955-607966:-1		target	5’SS	yes	CNH01830	CNAG_05532	Arylformamidase
GCTCCAGTAGTG	‘SSSS’	8:200721-200732:-1		target	CDS-exon	yes	CNH03220	CNAG_05312	Macrofage activating glycoprotein
	‘APVV’	11:732037-73248:1		target	CDS-exon	no	CNK02520	CNAG_01909	signal transducer
GTTTCAGTAGTG		1:524729-524740:-1		as-guide	exon		CNA01950
	‘GFSS’	2:1400388-1400399:1		target	intron	no	CNB04900	CNAG_04007	Septin ring protein
		8:489238-489249:1		target	intron	no	CNH02290	CNAG_05584	Methylthioribulose-1-phosphate dehydratase MDE1
		11:308510-308521:-1		as-guide	exon		CNK01000
		11:710896-710907:1		as-guide	exon		CNK02450
GCTCTAGCAGTG		8:612831-612842:1		as-guide			CNH01820
GCTTCAGTAGTG	‘SFSS’	9:382118-382129:1		target	exon	no			not annotated, centromeric, poss. non-coding spliced transcript
GTTTTAGTAGTG		3:1833476-1833487:1		as-guide	exon		CNC06260
		10:608555-608566:-1		target	intron	no	CNK02450		not annotated, poss. non-coding spliced transcript
GTTCCAGTAGTG	‘APAV’	11:378737-378748:1		as-guide	exon		CNK01260
GCTCCAGCAGTG		11:494814-494825:1		target	exon	no	CNK01680	CNAG_02680	VPS15 protein kinase
GCCTTAGCAGTG		1:500049-500060:1		as-guide	exon		CNA01850
		4:410830-410841:1		target	5’SS	no	CND01470	CNAG_01017	E3 ubiquitin-protein ligase SHPRH
		14:566106-566117:-1		as-guide	exon		CNN01950

[1]

Orientation ‘target’ implies described RNA could base-pair to snRcnag12093 guide; ‘as-guide’ means that search sequence is antisense to described RNA, thus like the complementary snRcnag12093 guide. In this case no further analysis was done. ‘Conserved’ describes occurrence of target at same location in homologous genes in species beyond Cryptococcus that could express snRcnag12093 homologous snoRNAs (Tremellomycetes).