coalispr.resources.share.convert_plusmin_bedgraph_to_plusplus

Functions

bgconvert_file(infile, delim, header)	Bedgraph converter that splits ENSEMBL-bedgraphs with +/- values, see
main(args)

Module Contents

coalispr.resources.share.convert_plusmin_bedgraph_to_plusplus.bgconvert_file(infile, delim, header)

Bedgraph converter that splits ENSEMBL-bedgraphs with +/- values, see https://www.ensembl.org/info/website/upload/bed.html#bedGraph into stranded bedgraph files as is the output by STAR or PyCRAC

track type=bedGraph name=”BedGraph Format” description=”BedGraph format” priority=20 chr1 59302000 59302300 -1.0 chr1 59302300 59302600 -0.75 chr1 59302600 59302900 -0.50 chr1 59302900 59303200 -0.25 chr1 59303200 59303500 0.0 chr1 59303500 59303800 0.25 chr1 59303800 59304100 0.50 chr1 59304100 59304400 0.75

coalispr.resources.share.convert_plusmin_bedgraph_to_plusplus.main(args)