coalispr.resources.share.convert_plusmin_bedgraph_to_plusplus¶

Functions¶

`bgconvert_file`(infile, delim, header)	Function that supposedly splits ENSEMBL-bedgraphs with +/- values
`main`(args)

Module Contents¶

coalispr.resources.share.convert_plusmin_bedgraph_to_plusplus.bgconvert_file(infile, delim, header)¶

Function that supposedly splits ENSEMBL-bedgraphs with +/- values (https://www.ensembl.org/info/website/upload/bed.html#bedGraph):

track type=bedGraph name="BedGraph Format" description="BedGraph format" priority=20
chr1 59302000 59302300 -1.0
chr1 59302300 59302600 -0.75
chr1 59302600 59302900 -0.50
chr1 59302900 59303200 -0.25
chr1 59303200 59303500 0.0
chr1 59303500 59303800 0.25
chr1 59303800 59304100 0.50
chr1 59304100 59304400 0.75

to stranded bedgraph files as output by STAR or PyCRAC that are the input for the program.

coalispr.resources.share.convert_plusmin_bedgraph_to_plusplus.main(args)¶